Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044632.t1 | RHN65795.1 | 81.4 | 397 | 73 | 1 | 1 | 397 | 46 | 441 | 4.20E-171 | 610.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044632.t1 | Q9S7T8 | 55.1 | 390 | 170 | 4 | 11 | 396 | 3 | 391 | 1.2e-115 | 417.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044632.t1 | A0A396IPH6 | 81.4 | 397 | 73 | 1 | 1 | 397 | 46 | 441 | 3.0e-171 | 610.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065945 | MS.gene044632 | PPI |
| MS.gene006610 | MS.gene044632 | PPI |
| MS.gene044632 | MS.gene045585 | PPI |
| MS.gene031697 | MS.gene044632 | PPI |
| MS.gene044632 | MS.gene065944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044632.t1 | MTR_3g018740 | 82.687 | 387 | 66 | 1 | 11 | 397 | 3 | 388 | 0.0 | 627 |
| MS.gene044632.t1 | MTR_3g101010 | 74.419 | 387 | 95 | 3 | 11 | 395 | 3 | 387 | 0.0 | 552 |
| MS.gene044632.t1 | MTR_4g045707 | 69.271 | 384 | 116 | 2 | 12 | 395 | 5 | 386 | 0.0 | 523 |
| MS.gene044632.t1 | MTR_8g027395 | 67.176 | 393 | 125 | 3 | 3 | 395 | 7 | 395 | 0.0 | 516 |
| MS.gene044632.t1 | MTR_2g045980 | 68.798 | 391 | 113 | 4 | 11 | 397 | 3 | 388 | 0.0 | 514 |
| MS.gene044632.t1 | MTR_2g046030 | 67.519 | 391 | 118 | 4 | 11 | 397 | 3 | 388 | 0.0 | 509 |
| MS.gene044632.t1 | MTR_8g027420 | 67.273 | 385 | 111 | 5 | 11 | 395 | 4 | 373 | 6.23e-175 | 493 |
| MS.gene044632.t1 | MTR_3g101030 | 65.075 | 398 | 115 | 6 | 18 | 395 | 34 | 427 | 1.08e-174 | 494 |
| MS.gene044632.t1 | MTR_3g048000 | 64.935 | 385 | 114 | 5 | 14 | 397 | 28 | 392 | 3.63e-174 | 491 |
| MS.gene044632.t1 | MTR_8g461160 | 66.240 | 391 | 120 | 6 | 13 | 395 | 6 | 392 | 5.86e-173 | 488 |
| MS.gene044632.t1 | MTR_3g101180 | 64.810 | 395 | 125 | 5 | 13 | 395 | 6 | 398 | 1.01e-170 | 483 |
| MS.gene044632.t1 | MTR_4g088525 | 66.667 | 363 | 117 | 3 | 33 | 395 | 9 | 367 | 3.49e-168 | 475 |
| MS.gene044632.t1 | MTR_7g451890 | 60.401 | 399 | 150 | 4 | 3 | 395 | 4 | 400 | 4.24e-168 | 476 |
| MS.gene044632.t1 | MTR_7g050810 | 61.250 | 400 | 144 | 5 | 5 | 395 | 5 | 402 | 8.38e-168 | 476 |
| MS.gene044632.t1 | MTR_7g047780 | 60.902 | 399 | 148 | 4 | 3 | 395 | 4 | 400 | 2.12e-166 | 472 |
| MS.gene044632.t1 | MTR_4g088535 | 65.000 | 380 | 113 | 5 | 13 | 392 | 7 | 366 | 7.54e-164 | 465 |
| MS.gene044632.t1 | MTR_7g050750 | 60.305 | 393 | 148 | 4 | 9 | 395 | 4 | 394 | 9.61e-163 | 462 |
| MS.gene044632.t1 | MTR_3g101130 | 61.697 | 389 | 138 | 6 | 12 | 395 | 5 | 387 | 5.29e-161 | 458 |
| MS.gene044632.t1 | MTR_3g101050 | 65.625 | 384 | 109 | 7 | 16 | 395 | 32 | 396 | 1.15e-156 | 447 |
| MS.gene044632.t1 | MTR_3g015620 | 61.224 | 392 | 120 | 5 | 10 | 395 | 13 | 378 | 7.29e-152 | 434 |
| MS.gene044632.t1 | MTR_3g102920 | 56.934 | 411 | 121 | 9 | 4 | 395 | 35 | 408 | 1.38e-141 | 409 |
| MS.gene044632.t1 | MTR_3g018747 | 79.389 | 262 | 38 | 3 | 137 | 397 | 9 | 255 | 1.76e-139 | 398 |
| MS.gene044632.t1 | MTR_3g101190 | 55.584 | 385 | 94 | 6 | 11 | 395 | 3 | 310 | 7.41e-131 | 378 |
| MS.gene044632.t1 | MTR_3g101200 | 52.273 | 396 | 156 | 6 | 5 | 395 | 23 | 390 | 7.05e-122 | 358 |
| MS.gene044632.t1 | MTR_3g100995 | 67.589 | 253 | 77 | 3 | 144 | 395 | 14 | 262 | 1.41e-116 | 340 |
| MS.gene044632.t1 | MTR_3g100010 | 58.147 | 313 | 82 | 3 | 36 | 315 | 40 | 336 | 1.81e-116 | 343 |
| MS.gene044632.t1 | MTR_7g050830 | 53.846 | 325 | 116 | 4 | 3 | 305 | 6 | 318 | 4.49e-112 | 331 |
| MS.gene044632.t1 | MTR_3g015760 | 61.733 | 277 | 98 | 5 | 122 | 395 | 8 | 279 | 1.93e-102 | 305 |
| MS.gene044632.t1 | MTR_3g111160 | 68.750 | 224 | 58 | 4 | 178 | 395 | 1 | 218 | 6.36e-97 | 288 |
| MS.gene044632.t1 | MTR_3g114310 | 42.569 | 397 | 203 | 10 | 14 | 394 | 20 | 407 | 6.62e-91 | 280 |
| MS.gene044632.t1 | MTR_3g100520 | 63.761 | 218 | 68 | 2 | 178 | 395 | 1 | 207 | 2.56e-90 | 271 |
| MS.gene044632.t1 | MTR_2g046410 | 66.346 | 208 | 64 | 3 | 194 | 397 | 144 | 349 | 3.09e-84 | 261 |
| MS.gene044632.t1 | MTR_3g101110 | 60.338 | 237 | 62 | 4 | 140 | 371 | 71 | 280 | 7.69e-84 | 257 |
| MS.gene044632.t1 | MTR_3g099970 | 61.576 | 203 | 59 | 3 | 132 | 334 | 15 | 198 | 4.82e-79 | 242 |
| MS.gene044632.t1 | MTR_3g111150 | 62.147 | 177 | 43 | 2 | 15 | 191 | 1 | 153 | 8.63e-68 | 212 |
| MS.gene044632.t1 | MTR_3g101150 | 65.409 | 159 | 47 | 4 | 243 | 395 | 1 | 157 | 4.27e-59 | 189 |
| MS.gene044632.t1 | MTR_3g102870 | 59.756 | 164 | 59 | 3 | 202 | 360 | 3 | 164 | 3.15e-58 | 188 |
| MS.gene044632.t1 | MTR_3g101020 | 55.914 | 186 | 53 | 3 | 211 | 395 | 1 | 158 | 1.63e-57 | 185 |
| MS.gene044632.t1 | MTR_3g100990 | 71.429 | 126 | 36 | 0 | 12 | 137 | 4 | 129 | 2.32e-53 | 185 |
| MS.gene044632.t1 | MTR_4g093550 | 67.045 | 88 | 29 | 0 | 9 | 96 | 2 | 89 | 2.70e-32 | 117 |
| MS.gene044632.t1 | MTR_6g046890 | 73.438 | 64 | 17 | 0 | 30 | 93 | 16 | 79 | 7.97e-25 | 99.0 |
| MS.gene044632.t1 | MTR_3g101140 | 56.757 | 74 | 28 | 2 | 325 | 395 | 42 | 114 | 1.14e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044632.t1 | AT1G47710 | 55.128 | 390 | 170 | 4 | 11 | 396 | 3 | 391 | 3.88e-150 | 430 |
| MS.gene044632.t1 | AT1G47710 | 55.128 | 390 | 170 | 4 | 11 | 396 | 30 | 418 | 1.74e-149 | 430 |
| MS.gene044632.t1 | AT2G25240 | 51.671 | 389 | 174 | 8 | 11 | 394 | 3 | 382 | 1.41e-128 | 375 |
| MS.gene044632.t1 | AT3G45220 | 49.747 | 396 | 179 | 7 | 11 | 394 | 3 | 390 | 3.54e-128 | 375 |
| MS.gene044632.t1 | AT2G26390 | 49.747 | 396 | 175 | 8 | 11 | 394 | 3 | 386 | 2.36e-124 | 365 |
| MS.gene044632.t1 | AT2G14540 | 43.500 | 400 | 191 | 9 | 4 | 394 | 24 | 397 | 4.52e-99 | 301 |
| MS.gene044632.t1 | AT1G62170 | 41.282 | 390 | 197 | 6 | 13 | 394 | 66 | 431 | 2.10e-96 | 295 |
| MS.gene044632.t1 | AT1G64030 | 41.371 | 394 | 196 | 7 | 11 | 394 | 3 | 371 | 1.06e-95 | 291 |
| MS.gene044632.t1 | AT2G35580 | 41.985 | 393 | 181 | 11 | 11 | 394 | 17 | 371 | 2.18e-91 | 280 |
| MS.gene044632.t1 | AT1G62170 | 38.061 | 423 | 197 | 7 | 13 | 394 | 66 | 464 | 3.60e-89 | 277 |
| MS.gene044632.t1 | AT1G64010 | 47.727 | 220 | 87 | 5 | 178 | 394 | 1 | 195 | 9.17e-59 | 190 |
| MS.gene044632.t1 | AT1G64010 | 46.341 | 205 | 82 | 5 | 193 | 394 | 2 | 181 | 9.16e-51 | 169 |
| MS.gene044632.t1 | AT1G62160 | 39.500 | 200 | 93 | 6 | 200 | 394 | 42 | 218 | 5.68e-35 | 129 |
| MS.gene044632.t1 | AT1G63280 | 52.542 | 118 | 52 | 2 | 134 | 249 | 5 | 120 | 1.21e-32 | 119 |
| MS.gene044632.t1 | AT1G51330 | 57.143 | 91 | 39 | 0 | 140 | 230 | 34 | 124 | 1.57e-26 | 105 |
| MS.gene044632.t1 | AT1G64020 | 34.821 | 112 | 70 | 3 | 18 | 127 | 10 | 120 | 2.83e-14 | 69.3 |
Find 73 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAATGCACTCTACTTTAA+AGG | 0.124495 | 3.1:+11276769 | MS.gene044632:CDS |
| TGATTAAAGAAGTGAATTTA+TGG | 0.223064 | 3.1:+11276668 | MS.gene044632:CDS |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3.1:-11276711 | None:intergenic |
| TTATCTTTGCCTTTCTTATA+CGG | 0.304297 | 3.1:-11276937 | None:intergenic |
| GGACAAAGTAGATTTATAAT+TGG | 0.309459 | 3.1:-11276011 | None:intergenic |
| TCTCCTTTGTCAATGGTGTA+TGG | 0.329536 | 3.1:+11275939 | MS.gene044632:CDS |
| TGAAGGAAGGTTGGAGAGAA+AGG | 0.338744 | 3.1:-11275973 | None:intergenic |
| AATTCACCTACTTCTACTTT+AGG | 0.342079 | 3.1:-11277072 | None:intergenic |
| GTTGATTCATCTACTGATCT+TGG | 0.347636 | 3.1:-11276733 | None:intergenic |
| GTTGAGATGATCTGTGGATT+TGG | 0.358590 | 3.1:-11275852 | None:intergenic |
| AAAAGATGGCTTGTCGGCTT+TGG | 0.374648 | 3.1:+11276996 | MS.gene044632:CDS |
| GATTAAAGAAGTGAATTTAT+GGG | 0.386003 | 3.1:+11276669 | MS.gene044632:CDS |
| AAAGAAGAACAACGATTCTT+CGG | 0.387616 | 3.1:+11275657 | MS.gene044632:CDS |
| ACTGAAATAATTCTCTTTGT+CGG | 0.397067 | 3.1:+11277390 | MS.gene044632:CDS |
| TTCCTTCCAAATGCAAAAGA+TGG | 0.403729 | 3.1:+11276982 | MS.gene044632:CDS |
| TGCCGAGGGAAACATTTGTT+TGG | 0.416643 | 3.1:-11275694 | None:intergenic |
| TTCTGTCGAGAACAGATGTT+TGG | 0.430392 | 3.1:-11275720 | None:intergenic |
| CTCTCGGATGCTGCTCCCAC+AGG | 0.433983 | 3.1:+11275905 | MS.gene044632:CDS |
| CTCCTTTGTCAATGGTGTAT+GGG | 0.438426 | 3.1:+11275940 | MS.gene044632:CDS |
| AAGAAGAACAACGATTCTTC+GGG | 0.443253 | 3.1:+11275658 | MS.gene044632:CDS |
| GAAGGAAGGTTGGAGAGAAA+GGG | 0.444795 | 3.1:-11275972 | None:intergenic |
| GCTTGTTTCTGTCGTGCTCT+CGG | 0.446945 | 3.1:+11275889 | MS.gene044632:CDS |
| CAATGATACTTAGCACAACT+TGG | 0.455852 | 3.1:-11275778 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.1:+11277255 | MS.gene044632:CDS |
| CTCTGTTGATTTCATGACCA+AGG | 0.457766 | 3.1:+11276033 | MS.gene044632:CDS |
| CCTCGACTCTCCTTTGTCAA+TGG | 0.460604 | 3.1:+11275932 | MS.gene044632:CDS |
| CTTCGTCTTCCGTATAAGAA+AGG | 0.461270 | 3.1:+11276928 | MS.gene044632:CDS |
| GAAGCTGCTGCAGCTAGTGC+TGG | 0.463886 | 3.1:+11277282 | MS.gene044632:CDS |
| CATCTCCTCGCTGGTCATGA+AGG | 0.481726 | 3.1:-11276872 | None:intergenic |
| CGTCTTCCTAAAGTAGAAGT+AGG | 0.495565 | 3.1:+11277066 | MS.gene044632:CDS |
| AAATGCAAAAGATGGCTTGT+CGG | 0.500590 | 3.1:+11276990 | MS.gene044632:CDS |
| CTTGTCGGCTTTGGTTAAGA+AGG | 0.503520 | 3.1:+11277005 | MS.gene044632:CDS |
| ATGGTGGACTCTTCTCTTGT+GGG | 0.507953 | 3.1:+11277195 | MS.gene044632:CDS |
| TCTCTAATTAGAAATAAGAA+AGG | 0.509129 | 3.1:-11277360 | None:intergenic |
| CACTCTACTTTAAAGGAGCA+TGG | 0.514338 | 3.1:+11276776 | MS.gene044632:CDS |
| GTGCTAAGTATCATTGCTGC+TGG | 0.522173 | 3.1:+11275785 | MS.gene044632:CDS |
| TCTGAATGGCAGCTCGGTCA+AGG | 0.529185 | 3.1:+11276846 | MS.gene044632:CDS |
| CTCTAATTAGAAATAAGAAA+GGG | 0.536391 | 3.1:-11277359 | None:intergenic |
| TCTGATATGCTGAAAGAGCT+AGG | 0.538261 | 3.1:+11277135 | MS.gene044632:CDS |
| TCGGATGCTGCTCCCACAGG+TGG | 0.539122 | 3.1:+11275908 | MS.gene044632:CDS |
| TATCATTGCTGCTGGTTGTG+AGG | 0.540874 | 3.1:+11275793 | MS.gene044632:CDS |
| ATCATTGCTGCTGGTTGTGA+GGG | 0.541244 | 3.1:+11275794 | MS.gene044632:CDS |
| AATGGTGGACTCTTCTCTTG+TGG | 0.543680 | 3.1:+11277194 | MS.gene044632:CDS |
| GTCAAACCTCCACGAGTGAA+AGG | 0.545644 | 3.1:-11277168 | None:intergenic |
| AATAAACTGCATCTCCTCGC+TGG | 0.546179 | 3.1:-11276881 | None:intergenic |
| ATCTCCTCGCTGGTCATGAA+GGG | 0.557796 | 3.1:-11276871 | None:intergenic |
| GAAATATATTAGAAACAGAA+AGG | 0.558448 | 3.1:-11277224 | None:intergenic |
| TCACCTTCTGAATGGCAGCT+CGG | 0.561657 | 3.1:+11276840 | MS.gene044632:CDS |
| TGCTAAGATCACTCATGAAG+AGG | 0.566263 | 3.1:-11277426 | None:intergenic |
| GATTCATCTACTGATCTTGG+AGG | 0.568404 | 3.1:-11276730 | None:intergenic |
| GAGGGAAACATTTGTTTGGT+TGG | 0.569951 | 3.1:-11275690 | None:intergenic |
| AACCAAACAAATGTTTCCCT+CGG | 0.575261 | 3.1:+11275692 | MS.gene044632:CDS |
| GTCGAGAAGCTGTTGTTGTG+TGG | 0.586119 | 3.1:-11275819 | None:intergenic |
| TGCATTAGTAAAGATGAGCC+TGG | 0.591361 | 3.1:-11276755 | None:intergenic |
| AACAAATGTTTCCCTCGGCA+TGG | 0.592617 | 3.1:+11275697 | MS.gene044632:CDS |
| TGACCGAGCTGCCATTCAGA+AGG | 0.594617 | 3.1:-11276843 | None:intergenic |
| ACAGATGTTTGGCCATGCCG+AGG | 0.599139 | 3.1:-11275709 | None:intergenic |
| CAGATGTTTGGCCATGCCGA+GGG | 0.601831 | 3.1:-11275708 | None:intergenic |
| TCGAGAAGCTGTTGTTGTGT+GGG | 0.605173 | 3.1:-11275818 | None:intergenic |
| AGCACAACTTGGATTGACAA+TGG | 0.620415 | 3.1:-11275767 | None:intergenic |
| GAGAGTCGAGGTCCACCTGT+GGG | 0.635303 | 3.1:-11275920 | None:intergenic |
| AAAATGTACATAGAGAATTG+AGG | 0.639607 | 3.1:-11276961 | None:intergenic |
| GGAGAGTCGAGGTCCACCTG+TGG | 0.645915 | 3.1:-11275921 | None:intergenic |
| AACCCATACACCATTGACAA+AGG | 0.645992 | 3.1:-11275942 | None:intergenic |
| GAGATAGTTGAGATGATCTG+TGG | 0.676063 | 3.1:-11275858 | None:intergenic |
| GATCTGTGGATTTGGACTCG+AGG | 0.679726 | 3.1:-11275844 | None:intergenic |
| CACGACAGAAACAAGCTGAG+AGG | 0.687540 | 3.1:-11275882 | None:intergenic |
| GATCAGTAGATGAATCAACC+AGG | 0.703083 | 3.1:+11276737 | MS.gene044632:CDS |
| GGCTCCCTTCATGACCAGCG+AGG | 0.705742 | 3.1:+11276867 | MS.gene044632:CDS |
| TATGCTGAAAGAGCTAGGAG+TGG | 0.709518 | 3.1:+11277140 | MS.gene044632:CDS |
| CTTTAGGAAGACGAAACGTG+TGG | 0.720518 | 3.1:-11277056 | None:intergenic |
| CTTGGTCATGAAATCAACAG+AGG | 0.726746 | 3.1:-11276032 | None:intergenic |
| CCATTGACAAAGGAGAGTCG+AGG | 0.747113 | 3.1:-11275932 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATGTTAATTAATTAA+AGG | + | chr3.1:11276139-11276158 | MS.gene044632:intron | 10.0% |
| !! | TTTCATGTTAATTAATTAAA+GGG | + | chr3.1:11276140-11276159 | MS.gene044632:intron | 10.0% |
| !!! | TTTGTTTTTATTTTATTTGA+AGG | - | chr3.1:11276108-11276127 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTTGAAG+TGG | - | chr3.1:11276456-11276475 | None:intergenic | 10.0% |
| !!! | ACTGATTTTTAAATTTGATA+CGG | + | chr3.1:11276627-11276646 | MS.gene044632:intron | 15.0% |
| !!! | TTTTTTTTTGAAGAAAAAGA+TGG | - | chr3.1:11276290-11276309 | None:intergenic | 15.0% |
| !! | CTCTAATTAGAAATAAGAAA+GGG | - | chr3.1:11277362-11277381 | None:intergenic | 20.0% |
| !! | GAAATATATTAGAAACAGAA+AGG | - | chr3.1:11277227-11277246 | None:intergenic | 20.0% |
| !! | GATTAAAGAAGTGAATTTAT+GGG | + | chr3.1:11276669-11276688 | MS.gene044632:CDS | 20.0% |
| !! | TCTCTAATTAGAAATAAGAA+AGG | - | chr3.1:11277363-11277382 | None:intergenic | 20.0% |
| !! | TGATTAAAGAAGTGAATTTA+TGG | + | chr3.1:11276668-11276687 | MS.gene044632:CDS | 20.0% |
| !!! | TAATAAAGTGTTTTTTCACA+TGG | - | chr3.1:11276429-11276448 | None:intergenic | 20.0% |
| !!! | TCAAATGAAATTTTGAATCT+TGG | - | chr3.1:11277105-11277124 | None:intergenic | 20.0% |
| !!! | TTTTATTTGAAGGAAAAAAC+AGG | - | chr3.1:11276098-11276117 | None:intergenic | 20.0% |
| ! | AAAATGTACATAGAGAATTG+AGG | - | chr3.1:11276964-11276983 | None:intergenic | 25.0% |
| ! | ACTGAAATAATTCTCTTTGT+CGG | + | chr3.1:11277390-11277409 | MS.gene044632:CDS | 25.0% |
| ! | ATACCTCAAAATATACAAGA+TGG | - | chr3.1:11276322-11276341 | None:intergenic | 25.0% |
| ! | ATAGTAAAAGTTCATGACTT+TGG | + | chr3.1:11276360-11276379 | MS.gene044632:intron | 25.0% |
| ! | GGACAAAGTAGATTTATAAT+TGG | - | chr3.1:11276014-11276033 | None:intergenic | 25.0% |
| ! | TATTACGTTGCTAAATTAGT+TGG | - | chr3.1:11276530-11276549 | None:intergenic | 25.0% |
| ! | TTATCTTTGCCTTTCTTATA+CGG | - | chr3.1:11276940-11276959 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.1:11277255-11277274 | MS.gene044632:CDS | 25.0% |
| ! | TTCTTTAATCAGTGTAGAAT+TGG | - | chr3.1:11276392-11276411 | None:intergenic | 25.0% |
| !! | TTTCCATCTTGTATATTTTG+AGG | + | chr3.1:11276316-11276335 | MS.gene044632:intron | 25.0% |
| AAAGAAGAACAACGATTCTT+CGG | + | chr3.1:11275657-11275676 | MS.gene044632:CDS | 30.0% | |
| AATTCACCTACTTCTACTTT+AGG | - | chr3.1:11277075-11277094 | None:intergenic | 30.0% | |
| ACAGATTGCTGTGAAAAAAA+GGG | - | chr3.1:11276075-11276094 | None:intergenic | 30.0% | |
| ACTAATGCACTCTACTTTAA+AGG | + | chr3.1:11276769-11276788 | MS.gene044632:CDS | 30.0% | |
| ATCCAACTAACCAGAAAATT+TGG | - | chr3.1:11276196-11276215 | None:intergenic | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.1:11276714-11276733 | None:intergenic | 30.0% | |
| GGATGCTAGAAAACAATAAA+GGG | - | chr3.1:11276509-11276528 | None:intergenic | 30.0% | |
| TCCAACTAACCAGAAAATTT+GGG | - | chr3.1:11276195-11276214 | None:intergenic | 30.0% | |
| TGGATGCTAGAAAACAATAA+AGG | - | chr3.1:11276510-11276529 | None:intergenic | 30.0% | |
| ! | CTGAAATAAAGTAGAAGCAT+TGG | - | chr3.1:11276231-11276250 | None:intergenic | 30.0% |
| ! | CTTTATTTCAGCACAAAGTT+TGG | + | chr3.1:11276240-11276259 | MS.gene044632:intron | 30.0% |
| ! | TATGATTTTCACCTTCTGAA+TGG | + | chr3.1:11276832-11276851 | MS.gene044632:CDS | 30.0% |
| AACCAAACAAATGTTTCCCT+CGG | + | chr3.1:11275692-11275711 | MS.gene044632:CDS | 35.0% | |
| AAGAAGAACAACGATTCTTC+GGG | + | chr3.1:11275658-11275677 | MS.gene044632:CDS | 35.0% | |
| CAATGATACTTAGCACAACT+TGG | - | chr3.1:11275781-11275800 | None:intergenic | 35.0% | |
| CCAACTAACCAGAAAATTTG+GGG | - | chr3.1:11276194-11276213 | None:intergenic | 35.0% | |
| GACAGATTGCTGTGAAAAAA+AGG | - | chr3.1:11276076-11276095 | None:intergenic | 35.0% | |
| TGCTAGAAAACAATAAAGGG+AGG | - | chr3.1:11276506-11276525 | None:intergenic | 35.0% | |
| TTCCTTCCAAATGCAAAAGA+TGG | + | chr3.1:11276982-11277001 | MS.gene044632:CDS | 35.0% | |
| ! | AAATGCAAAAGATGGCTTGT+CGG | + | chr3.1:11276990-11277009 | MS.gene044632:CDS | 35.0% |
| ! | CAGAAAATTTGGGGTATACT+AGG | - | chr3.1:11276185-11276204 | None:intergenic | 35.0% |
| ! | CTAGTATACCCCAAATTTTC+TGG | + | chr3.1:11276183-11276202 | MS.gene044632:intron | 35.0% |
| ! | GGAAGACAAGATTCTTTTGA+AGG | - | chr3.1:11275993-11276012 | None:intergenic | 35.0% |
| ! | GTTGATTCATCTACTGATCT+TGG | - | chr3.1:11276736-11276755 | None:intergenic | 35.0% |
| ! | TTTTTCACATGGCACATACA+TGG | - | chr3.1:11276418-11276437 | None:intergenic | 35.0% |
| !! | AGATTCTTTTGAAGGAAGGT+TGG | - | chr3.1:11275985-11276004 | None:intergenic | 35.0% |
| !! | GACAAGATTCTTTTGAAGGA+AGG | - | chr3.1:11275989-11276008 | None:intergenic | 35.0% |
| AACCCATACACCATTGACAA+AGG | - | chr3.1:11275945-11275964 | None:intergenic | 40.0% | |
| AGCACAACTTGGATTGACAA+TGG | - | chr3.1:11275770-11275789 | None:intergenic | 40.0% | |
| CGTCTTCCTAAAGTAGAAGT+AGG | + | chr3.1:11277066-11277085 | MS.gene044632:CDS | 40.0% | |
| CTCCTTTGTCAATGGTGTAT+GGG | + | chr3.1:11275940-11275959 | MS.gene044632:CDS | 40.0% | |
| CTTCGTCTTCCGTATAAGAA+AGG | + | chr3.1:11276928-11276947 | MS.gene044632:CDS | 40.0% | |
| CTTGGTCATGAAATCAACAG+AGG | - | chr3.1:11276035-11276054 | None:intergenic | 40.0% | |
| GAGATAGTTGAGATGATCTG+TGG | - | chr3.1:11275861-11275880 | None:intergenic | 40.0% | |
| GAGATATGTACCACAAACCT+TGG | - | chr3.1:11276053-11276072 | None:intergenic | 40.0% | |
| GAGGGAAACATTTGTTTGGT+TGG | - | chr3.1:11275693-11275712 | None:intergenic | 40.0% | |
| GATCAGTAGATGAATCAACC+AGG | + | chr3.1:11276737-11276756 | MS.gene044632:CDS | 40.0% | |
| GATTCATCTACTGATCTTGG+AGG | - | chr3.1:11276733-11276752 | None:intergenic | 40.0% | |
| GATTTCATGACCAAGGTTTG+TGG | + | chr3.1:11276040-11276059 | MS.gene044632:intron | 40.0% | |
| GTTGAGATGATCTGTGGATT+TGG | - | chr3.1:11275855-11275874 | None:intergenic | 40.0% | |
| TCGTGGAGGTTTGACAAAAA+TGG | + | chr3.1:11277176-11277195 | MS.gene044632:CDS | 40.0% | |
| TCTCCTTTGTCAATGGTGTA+TGG | + | chr3.1:11275939-11275958 | MS.gene044632:CDS | 40.0% | |
| TCTGATATGCTGAAAGAGCT+AGG | + | chr3.1:11277135-11277154 | MS.gene044632:CDS | 40.0% | |
| TGCATTAGTAAAGATGAGCC+TGG | - | chr3.1:11276758-11276777 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | + | chr3.1:11277179-11277198 | MS.gene044632:CDS | 40.0% | |
| TTCTGTCGAGAACAGATGTT+TGG | - | chr3.1:11275723-11275742 | None:intergenic | 40.0% | |
| ! | AGCCATCTTTTGCATTTGGA+AGG | - | chr3.1:11276987-11277006 | None:intergenic | 40.0% |
| ! | CACTCTACTTTAAAGGAGCA+TGG | + | chr3.1:11276776-11276795 | MS.gene044632:CDS | 40.0% |
| ! | GACAAGCCATCTTTTGCATT+TGG | - | chr3.1:11276991-11277010 | None:intergenic | 40.0% |
| !! | CTCTGTTGATTTCATGACCA+AGG | + | chr3.1:11276033-11276052 | MS.gene044632:CDS | 40.0% |
| !!! | CCCCAAATTTTCTGGTTAGT+TGG | + | chr3.1:11276191-11276210 | MS.gene044632:intron | 40.0% |
| AACAAATGTTTCCCTCGGCA+TGG | + | chr3.1:11275697-11275716 | MS.gene044632:CDS | 45.0% | |
| AATAAACTGCATCTCCTCGC+TGG | - | chr3.1:11276884-11276903 | None:intergenic | 45.0% | |
| GAAGGAAGGTTGGAGAGAAA+GGG | - | chr3.1:11275975-11275994 | None:intergenic | 45.0% | |
| GTGCTAAGTATCATTGCTGC+TGG | + | chr3.1:11275785-11275804 | MS.gene044632:CDS | 45.0% | |
| TATGCTGAAAGAGCTAGGAG+TGG | + | chr3.1:11277140-11277159 | MS.gene044632:CDS | 45.0% | |
| TCGAGAAGCTGTTGTTGTGT+GGG | - | chr3.1:11275821-11275840 | None:intergenic | 45.0% | |
| TGAAGGAAGGTTGGAGAGAA+AGG | - | chr3.1:11275976-11275995 | None:intergenic | 45.0% | |
| TGCCGAGGGAAACATTTGTT+TGG | - | chr3.1:11275697-11275716 | None:intergenic | 45.0% | |
| TGGGCTGAAAAAGAGACGAA+TGG | + | chr3.1:11276688-11276707 | MS.gene044632:CDS | 45.0% | |
| ! | ATCATTGCTGCTGGTTGTGA+GGG | + | chr3.1:11275794-11275813 | MS.gene044632:CDS | 45.0% |
| ! | CTTTAGGAAGACGAAACGTG+TGG | - | chr3.1:11277059-11277078 | None:intergenic | 45.0% |
| ! | GTTTTACCTTTCACTCGTGG+AGG | + | chr3.1:11277162-11277181 | MS.gene044632:CDS | 45.0% |
| ! | TATCATTGCTGCTGGTTGTG+AGG | + | chr3.1:11275793-11275812 | MS.gene044632:CDS | 45.0% |
| !! | AAAAGATGGCTTGTCGGCTT+TGG | + | chr3.1:11276996-11277015 | MS.gene044632:CDS | 45.0% |
| !! | AATGGTGGACTCTTCTCTTG+TGG | + | chr3.1:11277194-11277213 | MS.gene044632:CDS | 45.0% |
| !! | ATGGTGGACTCTTCTCTTGT+GGG | + | chr3.1:11277195-11277214 | MS.gene044632:CDS | 45.0% |
| !! | CTTGTCGGCTTTGGTTAAGA+AGG | + | chr3.1:11277005-11277024 | MS.gene044632:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCACTCG+TGG | + | chr3.1:11277159-11277178 | MS.gene044632:CDS | 45.0% |
| ATCTCCTCGCTGGTCATGAA+GGG | - | chr3.1:11276874-11276893 | None:intergenic | 50.0% | |
| CACGACAGAAACAAGCTGAG+AGG | - | chr3.1:11275885-11275904 | None:intergenic | 50.0% | |
| CCATTGACAAAGGAGAGTCG+AGG | - | chr3.1:11275935-11275954 | None:intergenic | 50.0% | |
| CCTCGACTCTCCTTTGTCAA+TGG | + | chr3.1:11275932-11275951 | MS.gene044632:CDS | 50.0% | |
| GATCTGTGGATTTGGACTCG+AGG | - | chr3.1:11275847-11275866 | None:intergenic | 50.0% | |
| GTCAAACCTCCACGAGTGAA+AGG | - | chr3.1:11277171-11277190 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGTTGTTGTG+TGG | - | chr3.1:11275822-11275841 | None:intergenic | 50.0% | |
| TCACCTTCTGAATGGCAGCT+CGG | + | chr3.1:11276840-11276859 | MS.gene044632:CDS | 50.0% | |
| !! | GCTTGTTTCTGTCGTGCTCT+CGG | + | chr3.1:11275889-11275908 | MS.gene044632:CDS | 50.0% |
| ACAGATGTTTGGCCATGCCG+AGG | - | chr3.1:11275712-11275731 | None:intergenic | 55.0% | |
| CAGATGTTTGGCCATGCCGA+GGG | - | chr3.1:11275711-11275730 | None:intergenic | 55.0% | |
| CATCTCCTCGCTGGTCATGA+AGG | - | chr3.1:11276875-11276894 | None:intergenic | 55.0% | |
| TCTGAATGGCAGCTCGGTCA+AGG | + | chr3.1:11276846-11276865 | MS.gene044632:CDS | 55.0% | |
| TGACCGAGCTGCCATTCAGA+AGG | - | chr3.1:11276846-11276865 | None:intergenic | 55.0% | |
| GAAGCTGCTGCAGCTAGTGC+TGG | + | chr3.1:11277282-11277301 | MS.gene044632:CDS | 60.0% | |
| GAGAGTCGAGGTCCACCTGT+GGG | - | chr3.1:11275923-11275942 | None:intergenic | 60.0% | |
| CTCTCGGATGCTGCTCCCAC+AGG | + | chr3.1:11275905-11275924 | MS.gene044632:CDS | 65.0% | |
| GGAGAGTCGAGGTCCACCTG+TGG | - | chr3.1:11275924-11275943 | None:intergenic | 65.0% | |
| GGCTCCCTTCATGACCAGCG+AGG | + | chr3.1:11276867-11276886 | MS.gene044632:CDS | 65.0% | |
| TCGGATGCTGCTCCCACAGG+TGG | + | chr3.1:11275908-11275927 | MS.gene044632:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 11275644 | 11277440 | 11275644 | ID=MS.gene044632 |
| chr3.1 | mRNA | 11275644 | 11277440 | 11275644 | ID=MS.gene044632.t1;Parent=MS.gene044632 |
| chr3.1 | exon | 11275644 | 11276054 | 11275644 | ID=MS.gene044632.t1.exon1;Parent=MS.gene044632.t1 |
| chr3.1 | CDS | 11275644 | 11276054 | 11275644 | ID=cds.MS.gene044632.t1;Parent=MS.gene044632.t1 |
| chr3.1 | exon | 11276658 | 11277440 | 11276658 | ID=MS.gene044632.t1.exon2;Parent=MS.gene044632.t1 |
| chr3.1 | CDS | 11276658 | 11277440 | 11276658 | ID=cds.MS.gene044632.t1;Parent=MS.gene044632.t1 |
| Gene Sequence |
| Protein sequence |
