Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044633.t1 | RHN65795.1 | 82.3 | 389 | 65 | 2 | 1 | 386 | 54 | 441 | 3.80E-169 | 604.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044633.t1 | Q9S7T8 | 52.2 | 391 | 179 | 6 | 1 | 384 | 1 | 390 | 6.4e-109 | 395.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044633.t1 | G7IW05 | 82.3 | 389 | 65 | 2 | 1 | 386 | 1 | 388 | 2.7e-169 | 604.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene044633 | PPI |
| MS.gene044633 | MS.gene045585 | PPI |
| MS.gene065945 | MS.gene044633 | PPI |
| MS.gene031697 | MS.gene044633 | PPI |
| MS.gene044633 | MS.gene065944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044633.t1 | MTR_3g018740 | 82.262 | 389 | 65 | 2 | 1 | 386 | 1 | 388 | 0.0 | 620 |
| MS.gene044633.t1 | MTR_3g101010 | 73.969 | 388 | 96 | 3 | 1 | 384 | 1 | 387 | 0.0 | 556 |
| MS.gene044633.t1 | MTR_2g045980 | 71.429 | 392 | 102 | 4 | 1 | 386 | 1 | 388 | 0.0 | 530 |
| MS.gene044633.t1 | MTR_2g046030 | 70.153 | 392 | 107 | 4 | 1 | 386 | 1 | 388 | 0.0 | 526 |
| MS.gene044633.t1 | MTR_4g045707 | 69.452 | 383 | 114 | 2 | 4 | 384 | 5 | 386 | 0.0 | 519 |
| MS.gene044633.t1 | MTR_8g027395 | 67.959 | 387 | 113 | 4 | 3 | 384 | 15 | 395 | 0.0 | 515 |
| MS.gene044633.t1 | MTR_3g101030 | 67.089 | 395 | 109 | 5 | 10 | 384 | 34 | 427 | 0.0 | 514 |
| MS.gene044633.t1 | MTR_3g048000 | 66.234 | 385 | 102 | 7 | 6 | 384 | 28 | 390 | 2.34e-176 | 496 |
| MS.gene044633.t1 | MTR_8g461160 | 67.939 | 393 | 111 | 8 | 5 | 386 | 6 | 394 | 9.54e-176 | 495 |
| MS.gene044633.t1 | MTR_8g027420 | 66.146 | 384 | 114 | 4 | 3 | 384 | 4 | 373 | 3.54e-174 | 490 |
| MS.gene044633.t1 | MTR_3g101180 | 65.509 | 403 | 115 | 10 | 1 | 384 | 1 | 398 | 3.12e-173 | 489 |
| MS.gene044633.t1 | MTR_4g088525 | 67.493 | 363 | 113 | 3 | 24 | 384 | 8 | 367 | 9.64e-173 | 486 |
| MS.gene044633.t1 | MTR_7g451890 | 63.427 | 391 | 134 | 4 | 3 | 385 | 12 | 401 | 8.17e-171 | 483 |
| MS.gene044633.t1 | MTR_7g047780 | 64.194 | 391 | 131 | 5 | 3 | 385 | 12 | 401 | 1.31e-169 | 479 |
| MS.gene044633.t1 | MTR_7g050810 | 62.916 | 391 | 136 | 4 | 3 | 385 | 14 | 403 | 7.74e-169 | 478 |
| MS.gene044633.t1 | MTR_3g101130 | 64.508 | 386 | 129 | 4 | 4 | 384 | 5 | 387 | 3.43e-168 | 476 |
| MS.gene044633.t1 | MTR_7g050750 | 62.404 | 391 | 138 | 4 | 3 | 385 | 6 | 395 | 1.81e-167 | 474 |
| MS.gene044633.t1 | MTR_4g088535 | 65.699 | 379 | 109 | 4 | 5 | 381 | 7 | 366 | 1.40e-164 | 466 |
| MS.gene044633.t1 | MTR_3g101050 | 64.136 | 382 | 115 | 6 | 8 | 384 | 32 | 396 | 1.18e-161 | 459 |
| MS.gene044633.t1 | MTR_3g018747 | 85.496 | 262 | 19 | 3 | 129 | 386 | 9 | 255 | 2.24e-155 | 438 |
| MS.gene044633.t1 | MTR_3g015620 | 61.240 | 387 | 121 | 4 | 5 | 385 | 16 | 379 | 2.11e-152 | 435 |
| MS.gene044633.t1 | MTR_3g102920 | 56.675 | 397 | 116 | 9 | 5 | 384 | 51 | 408 | 4.99e-136 | 395 |
| MS.gene044633.t1 | MTR_3g101190 | 54.922 | 386 | 96 | 5 | 1 | 384 | 1 | 310 | 1.33e-130 | 377 |
| MS.gene044633.t1 | MTR_3g101200 | 54.922 | 386 | 146 | 5 | 3 | 384 | 29 | 390 | 3.58e-127 | 372 |
| MS.gene044633.t1 | MTR_3g100995 | 67.984 | 253 | 79 | 2 | 134 | 385 | 12 | 263 | 1.75e-121 | 352 |
| MS.gene044633.t1 | MTR_7g050830 | 58.095 | 315 | 98 | 4 | 5 | 297 | 16 | 318 | 4.56e-115 | 338 |
| MS.gene044633.t1 | MTR_3g100010 | 57.827 | 313 | 83 | 4 | 28 | 307 | 40 | 336 | 1.65e-114 | 337 |
| MS.gene044633.t1 | MTR_3g015760 | 63.985 | 261 | 89 | 4 | 128 | 385 | 22 | 280 | 1.55e-105 | 312 |
| MS.gene044633.t1 | MTR_3g111160 | 71.689 | 219 | 57 | 3 | 170 | 384 | 1 | 218 | 2.58e-103 | 304 |
| MS.gene044633.t1 | MTR_2g046410 | 68.116 | 207 | 59 | 3 | 186 | 386 | 144 | 349 | 2.69e-88 | 271 |
| MS.gene044633.t1 | MTR_3g100520 | 62.557 | 219 | 66 | 5 | 170 | 384 | 1 | 207 | 2.63e-83 | 253 |
| MS.gene044633.t1 | MTR_3g114310 | 41.772 | 395 | 206 | 12 | 6 | 383 | 20 | 407 | 3.62e-83 | 260 |
| MS.gene044633.t1 | MTR_3g099970 | 63.861 | 202 | 55 | 3 | 123 | 323 | 14 | 198 | 2.81e-82 | 250 |
| MS.gene044633.t1 | MTR_3g101110 | 57.261 | 241 | 66 | 5 | 129 | 360 | 68 | 280 | 1.11e-80 | 249 |
| MS.gene044633.t1 | MTR_3g111150 | 62.712 | 177 | 42 | 1 | 7 | 183 | 1 | 153 | 3.17e-68 | 213 |
| MS.gene044633.t1 | MTR_3g101020 | 56.044 | 182 | 55 | 2 | 205 | 385 | 2 | 159 | 1.33e-60 | 193 |
| MS.gene044633.t1 | MTR_3g101150 | 63.694 | 157 | 49 | 3 | 236 | 384 | 1 | 157 | 1.56e-58 | 187 |
| MS.gene044633.t1 | MTR_3g102870 | 60.256 | 156 | 59 | 2 | 192 | 345 | 1 | 155 | 2.24e-57 | 185 |
| MS.gene044633.t1 | MTR_3g100990 | 69.697 | 132 | 40 | 0 | 1 | 132 | 1 | 132 | 4.05e-54 | 186 |
| MS.gene044633.t1 | MTR_4g093550 | 67.442 | 86 | 28 | 0 | 3 | 88 | 4 | 89 | 2.32e-32 | 117 |
| MS.gene044633.t1 | MTR_6g046890 | 68.493 | 73 | 23 | 0 | 13 | 85 | 7 | 79 | 1.69e-25 | 100 |
| MS.gene044633.t1 | MTR_3g101140 | 59.701 | 67 | 24 | 1 | 321 | 384 | 48 | 114 | 1.56e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044633.t1 | AT1G47710 | 52.174 | 391 | 179 | 6 | 1 | 384 | 1 | 390 | 2.49e-140 | 405 |
| MS.gene044633.t1 | AT1G47710 | 52.174 | 391 | 179 | 6 | 1 | 384 | 28 | 417 | 1.78e-139 | 404 |
| MS.gene044633.t1 | AT3G45220 | 48.363 | 397 | 184 | 8 | 1 | 383 | 1 | 390 | 6.30e-124 | 363 |
| MS.gene044633.t1 | AT2G25240 | 48.974 | 390 | 184 | 8 | 1 | 383 | 1 | 382 | 1.43e-120 | 354 |
| MS.gene044633.t1 | AT2G26390 | 49.000 | 400 | 173 | 10 | 1 | 383 | 1 | 386 | 1.10e-119 | 352 |
| MS.gene044633.t1 | AT1G64030 | 43.223 | 391 | 194 | 8 | 1 | 383 | 1 | 371 | 1.40e-101 | 306 |
| MS.gene044633.t1 | AT2G14540 | 44.615 | 390 | 188 | 7 | 1 | 383 | 29 | 397 | 5.09e-98 | 298 |
| MS.gene044633.t1 | AT1G62170 | 42.199 | 391 | 197 | 6 | 1 | 383 | 62 | 431 | 7.93e-98 | 298 |
| MS.gene044633.t1 | AT2G35580 | 42.132 | 394 | 180 | 11 | 1 | 383 | 15 | 371 | 5.88e-94 | 286 |
| MS.gene044633.t1 | AT1G62170 | 38.915 | 424 | 197 | 7 | 1 | 383 | 62 | 464 | 7.91e-91 | 281 |
| MS.gene044633.t1 | AT1G64010 | 47.907 | 215 | 91 | 4 | 170 | 383 | 1 | 195 | 3.83e-62 | 198 |
| MS.gene044633.t1 | AT1G64010 | 46.500 | 200 | 86 | 4 | 185 | 383 | 2 | 181 | 2.00e-54 | 178 |
| MS.gene044633.t1 | AT1G62160 | 42.132 | 197 | 89 | 4 | 192 | 383 | 42 | 218 | 1.25e-34 | 127 |
| MS.gene044633.t1 | AT1G63280 | 55.462 | 119 | 48 | 3 | 126 | 242 | 5 | 120 | 5.53e-34 | 122 |
| MS.gene044633.t1 | AT1G51330 | 49.587 | 121 | 50 | 2 | 103 | 223 | 15 | 124 | 2.06e-26 | 105 |
| MS.gene044633.t1 | AT1G64020 | 30.579 | 121 | 81 | 3 | 1 | 119 | 1 | 120 | 3.65e-13 | 66.2 |
Find 76 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTCTACTTTAA+AGG | 0.141946 | 3.1:+11283090 | MS.gene044633:CDS |
| CGACTAAAGAAGTGAATTTA+TGG | 0.178990 | 3.1:+11282989 | MS.gene044633:CDS |
| TTATCTTTGCCTTTCTTATA+CGG | 0.278481 | 3.1:-11283261 | None:intergenic |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3.1:-11283032 | None:intergenic |
| TCTCCTTCGTCAGTGGTGTA+TGG | 0.338625 | 3.1:+11281746 | MS.gene044633:CDS |
| AATAAACTGCATCTCCTTGC+TGG | 0.359084 | 3.1:-11283205 | None:intergenic |
| ACTGGAACCATTCTCTTTGT+TGG | 0.359618 | 3.1:+11283702 | MS.gene044633:CDS |
| TATTTCTGATTAGAGAAGAT+TGG | 0.360147 | 3.1:+11283679 | MS.gene044633:CDS |
| AAAAGATGGCTTGTCGGCTT+TGG | 0.374648 | 3.1:+11283320 | MS.gene044633:CDS |
| AATTCACCTACTTCTTCTTC+AGG | 0.377679 | 3.1:-11283393 | None:intergenic |
| CTTGTCGGCTTTGGTTAATA+AGG | 0.379850 | 3.1:+11283329 | MS.gene044633:CDS |
| ATCTAATTACGAGGCCACTA+TGG | 0.387391 | 3.1:+11281816 | MS.gene044633:CDS |
| TTCTTTCAAGAACAGATGTT+TGG | 0.393806 | 3.1:-11281527 | None:intergenic |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.398588 | 3.1:-11281780 | None:intergenic |
| TTCCTTCCAAATGCAAAAGA+TGG | 0.403729 | 3.1:+11283306 | MS.gene044633:CDS |
| TGCATAGGGAAACATTTGTT+TGG | 0.410867 | 3.1:-11281501 | None:intergenic |
| AGATGACACGATTTCTTTGA+AGG | 0.432418 | 3.1:-11281797 | None:intergenic |
| CTCCTTGCTGGTCGTCATGA+AGG | 0.435175 | 3.1:-11283193 | None:intergenic |
| GTTAAGCTATCAACTGATCT+TGG | 0.441723 | 3.1:-11283054 | None:intergenic |
| CTCTCCGATGCTGCTCCCAC+AGG | 0.449677 | 3.1:+11281712 | MS.gene044633:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 3.1:-11281779 | None:intergenic |
| CTCCTTCGTCAGTGGTGTAT+GGG | 0.456822 | 3.1:+11281747 | MS.gene044633:CDS |
| CTTCGTCTTCCGTATAAGAA+AGG | 0.461270 | 3.1:+11283252 | MS.gene044633:CDS |
| GACTAAAGAAGTGAATTTAT+GGG | 0.462620 | 3.1:+11282990 | MS.gene044633:CDS |
| AGGAAAATGTACATAGAGAA+TGG | 0.462827 | 3.1:-11283288 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.463233 | 3.1:+11283567 | MS.gene044633:CDS |
| AACAGCTTCTCGACTTCCTC+CGG | 0.467511 | 3.1:+11281635 | MS.gene044633:CDS |
| TCCACCTGTGGGAGCAGCAT+CGG | 0.481475 | 3.1:-11281716 | None:intergenic |
| TTTGGTTGGTGATCGATTCA+CGG | 0.490521 | 3.1:-11281483 | None:intergenic |
| TGCATTAGCAAAGATGAGTC+TGG | 0.499282 | 3.1:-11283076 | None:intergenic |
| AAATGCAAAAGATGGCTTGT+CGG | 0.500590 | 3.1:+11283314 | MS.gene044633:CDS |
| CTGATTAGAGAAGATTGGAC+TGG | 0.501644 | 3.1:+11283684 | MS.gene044633:CDS |
| GAAATATTTCAGAAACAGAA+AGG | 0.510094 | 3.1:-11283536 | None:intergenic |
| GTACTAAGCATCATCGCTGC+TGG | 0.510384 | 3.1:+11281592 | MS.gene044633:CDS |
| ATCATCGCTGCTGGCTCTGA+GGG | 0.511801 | 3.1:+11281601 | MS.gene044633:CDS |
| CACTCTACTTTAAAGGAGCA+TGG | 0.514338 | 3.1:+11283097 | MS.gene044633:CDS |
| TAGGGAAACATTTGTTTGGT+TGG | 0.515152 | 3.1:-11281497 | None:intergenic |
| TCCGATGCTGCTCCCACAGG+TGG | 0.515601 | 3.1:+11281715 | MS.gene044633:CDS |
| TGACCGAGCTGCCATTCAAA+AGG | 0.515686 | 3.1:-11283164 | None:intergenic |
| CATCATCGCTGCTGGCTCTG+AGG | 0.516897 | 3.1:+11281600 | MS.gene044633:CDS |
| CAGATGTTTGGCAATGCATA+GGG | 0.522319 | 3.1:-11281515 | None:intergenic |
| GACACGATTTCTTTGAAGGA+AGG | 0.523677 | 3.1:-11281793 | None:intergenic |
| GTCAAACCTCCAGGAGTGAA+AGG | 0.524050 | 3.1:-11283489 | None:intergenic |
| CACTTGTCCAACAAAGAGAA+TGG | 0.528533 | 3.1:-11283709 | None:intergenic |
| TCTCTAATCAGAAATAAGAA+AGG | 0.528708 | 3.1:-11283672 | None:intergenic |
| TTTGAATGGCAGCTCGGTCA+AGG | 0.529731 | 3.1:+11283167 | MS.gene044633:CDS |
| GTCGGCTTTGGTTAATAAGG+TGG | 0.531612 | 3.1:+11283332 | MS.gene044633:CDS |
| AGTCTTCCTGAAGAAGAAGT+AGG | 0.534032 | 3.1:+11283387 | MS.gene044633:CDS |
| TCTCATATGCTGAAAGAGCT+AGG | 0.539995 | 3.1:+11283456 | MS.gene044633:CDS |
| ACAGATGTTTGGCAATGCAT+AGG | 0.540369 | 3.1:-11281516 | None:intergenic |
| GAAATCAACATAAGCCATAG+TGG | 0.543010 | 3.1:-11281830 | None:intergenic |
| TGCTAAGATCACTGATCAAG+AGG | 0.544299 | 3.1:-11283738 | None:intergenic |
| TCCTTGCTGGTCGTCATGAA+GGG | 0.547728 | 3.1:-11283192 | None:intergenic |
| GATGATCAGTGGATTTAGAC+CGG | 0.555777 | 3.1:-11281654 | None:intergenic |
| AAGCTATCAACTGATCTTGG+AGG | 0.569083 | 3.1:-11283051 | None:intergenic |
| CCTCGACTCTCCTTCGTCAG+TGG | 0.575802 | 3.1:+11281739 | MS.gene044633:CDS |
| TAATCAGAAATAAGAAAGGA+TGG | 0.579869 | 3.1:-11283668 | None:intergenic |
| TTATGTTGATTTCATAACCA+AGG | 0.579962 | 3.1:+11281840 | MS.gene044633:CDS |
| GTCGAGAAGCTGTTGTTGTG+TGG | 0.586119 | 3.1:-11281626 | None:intergenic |
| AATCTGAGTTACTACACCAC+AGG | 0.600834 | 3.1:+11283361 | MS.gene044633:CDS |
| TCGAGAAGCTGTTGTTGTGT+GGG | 0.605173 | 3.1:-11281625 | None:intergenic |
| CACGACAGAAACAAGCTGAA+AGG | 0.609451 | 3.1:-11281689 | None:intergenic |
| TAGTGCTGCAATATGTTCCG+AGG | 0.625856 | 3.1:+11283608 | MS.gene044633:CDS |
| GAGAGTCGAGGTCCACCTGT+GGG | 0.635303 | 3.1:-11281727 | None:intergenic |
| AGTTTGAAATCGAATACCCT+CGG | 0.636520 | 3.1:-11283625 | None:intergenic |
| TCCCTTCATGACGACCAGCA+AGG | 0.643413 | 3.1:+11283191 | MS.gene044633:CDS |
| GGAGAGTCGAGGTCCACCTG+TGG | 0.645915 | 3.1:-11281728 | None:intergenic |
| AGTGCTGCAATATGTTCCGA+GGG | 0.658631 | 3.1:+11283609 | MS.gene044633:CDS |
| AACCCATACACCACTGACGA+AGG | 0.659348 | 3.1:-11281749 | None:intergenic |
| AAGATAGTTGAGATGATCAG+TGG | 0.660413 | 3.1:-11281665 | None:intergenic |
| AGTACAATTTGAAGAGACAG+TGG | 0.677153 | 3.1:-11281574 | None:intergenic |
| AATCGTGTCATCTAATTACG+AGG | 0.678044 | 3.1:+11281807 | MS.gene044633:CDS |
| CTTCAGGAAGACTAAACCTG+TGG | 0.690571 | 3.1:-11283377 | None:intergenic |
| TATGCTGAAAGAGCTAGGAG+TGG | 0.693506 | 3.1:+11283461 | MS.gene044633:CDS |
| CCACTGACGAAGGAGAGTCG+AGG | 0.741972 | 3.1:-11281739 | None:intergenic |
| GATCAGTGGATTTAGACCGG+AGG | 0.742435 | 3.1:-11281651 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAATTTAAAAATCAATTA+TGG | - | chr3.1:11282946-11282965 | None:intergenic | 10.0% |
| !! | TTAAAAGTCAAAAAAAATTT+CGG | + | chr3.1:11282480-11282499 | MS.gene044633:intron | 10.0% |
| !! | AAAACAAAAAAAAATAAGTC+AGG | + | chr3.1:11282550-11282569 | MS.gene044633:intron | 15.0% |
| !! | AAACAAAAAAAAATAAGTCA+GGG | + | chr3.1:11282551-11282570 | MS.gene044633:intron | 15.0% |
| !! | TTGTACTATCAAAATATAAA+GGG | - | chr3.1:11282754-11282773 | None:intergenic | 15.0% |
| !!! | AAACTGAATTTTTTTTTTGA+AGG | + | chr3.1:11282522-11282541 | MS.gene044633:intron | 15.0% |
| !!! | TAAATTTGATATTGTTTTGA+AGG | + | chr3.1:11282957-11282976 | MS.gene044633:intron | 15.0% |
| !!! | TATTTTCCATTTACAATTAA+TGG | + | chr3.1:11281918-11281937 | MS.gene044633:intron | 15.0% |
| !! | AACAAAAAAAAATAAGTCAG+GGG | + | chr3.1:11282552-11282571 | MS.gene044633:intron | 20.0% |
| !! | ATACCTCAAAATATACAATA+TGG | - | chr3.1:11282196-11282215 | None:intergenic | 20.0% |
| !! | GGTATGAATTACTTTATATT+TGG | + | chr3.1:11282211-11282230 | MS.gene044633:intron | 20.0% |
| !! | GTTGTACTATCAAAATATAA+AGG | - | chr3.1:11282755-11282774 | None:intergenic | 20.0% |
| !!! | AATAACATTTGCTCTAAATT+AGG | - | chr3.1:11281983-11282002 | None:intergenic | 20.0% |
| !!! | TCAAATGAAATTTTGAATCT+TGG | - | chr3.1:11283426-11283445 | None:intergenic | 20.0% |
| ! | ACGTCATCAATTTAACAAAA+TGG | - | chr3.1:11282598-11282617 | None:intergenic | 25.0% |
| ! | ATAAAATAAACTGTTTGCGA+AGG | - | chr3.1:11281949-11281968 | None:intergenic | 25.0% |
| ! | GAAATATTTCAGAAACAGAA+AGG | - | chr3.1:11283539-11283558 | None:intergenic | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | + | chr3.1:11282990-11283009 | MS.gene044633:CDS | 25.0% |
| ! | GTAAATGGAAAATAAAAGCA+GGG | - | chr3.1:11281912-11281931 | None:intergenic | 25.0% |
| ! | GTAGATCCATTAATTGTAAA+TGG | - | chr3.1:11281927-11281946 | None:intergenic | 25.0% |
| ! | TAATCAGAAATAAGAAAGGA+TGG | - | chr3.1:11283671-11283690 | None:intergenic | 25.0% |
| ! | TAGAACAAATAGATTCATTC+TGG | - | chr3.1:11282920-11282939 | None:intergenic | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | - | chr3.1:11283675-11283694 | None:intergenic | 25.0% |
| ! | TGTAAATGGAAAATAAAAGC+AGG | - | chr3.1:11281913-11281932 | None:intergenic | 25.0% |
| ! | TTAACTGATTAAACTTTGCA+GGG | - | chr3.1:11282315-11282334 | None:intergenic | 25.0% |
| ! | TTATCTTTGCCTTTCTTATA+CGG | - | chr3.1:11283264-11283283 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.1:11283567-11283586 | MS.gene044633:CDS | 25.0% |
| ! | TTCTTTGATCAATATAGCTT+TGG | - | chr3.1:11282797-11282816 | None:intergenic | 25.0% |
| ! | TTGAAAAAAAAATTAGCCCA+GGG | - | chr3.1:11282415-11282434 | None:intergenic | 25.0% |
| ! | TTTAACTGATTAAACTTTGC+AGG | - | chr3.1:11282316-11282335 | None:intergenic | 25.0% |
| ! | TTTAAGTGATTAAACTTTGC+AGG | + | chr3.1:11282649-11282668 | MS.gene044633:intron | 25.0% |
| ! | TTTGAAAAAAAAATTAGCCC+AGG | - | chr3.1:11282416-11282435 | None:intergenic | 25.0% |
| !! | AAAGTAGGTTCTTCTTTTAA+AGG | + | chr3.1:11282074-11282093 | MS.gene044633:intron | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | + | chr3.1:11283153-11283172 | MS.gene044633:CDS | 25.0% |
| !! | TATTTCTGATTAGAGAAGAT+TGG | + | chr3.1:11283679-11283698 | MS.gene044633:CDS | 25.0% |
| !! | TGTCCATATTGTATATTTTG+AGG | + | chr3.1:11282190-11282209 | MS.gene044633:intron | 25.0% |
| !!! | ATTTTGTTAAATTGATGACG+TGG | + | chr3.1:11282597-11282616 | MS.gene044633:intron | 25.0% |
| !!! | GTTATTTTACTTTTGAAGCA+TGG | + | chr3.1:11281997-11282016 | MS.gene044633:intron | 25.0% |
| !!! | TTATGTTGATTTCATAACCA+AGG | + | chr3.1:11281840-11281859 | MS.gene044633:CDS | 25.0% |
| AGGAAAATGTACATAGAGAA+TGG | - | chr3.1:11283291-11283310 | None:intergenic | 30.0% | |
| CAAAATTACCATAATGGCAT+GGG | + | chr3.1:11282374-11282393 | MS.gene044633:intron | 30.0% | |
| CAGTGCTATAAAATTTGAAG+AGG | - | chr3.1:11282857-11282876 | None:intergenic | 30.0% | |
| CGACTAAAGAAGTGAATTTA+TGG | + | chr3.1:11282989-11283008 | MS.gene044633:CDS | 30.0% | |
| CGTCATCAAAATTACCATAA+TGG | + | chr3.1:11282368-11282387 | MS.gene044633:intron | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.1:11283035-11283054 | None:intergenic | 30.0% | |
| GTATATTTCAGCACAAAGTA+GGG | + | chr3.1:11282151-11282170 | MS.gene044633:intron | 30.0% | |
| TAACTGATTAAACTTTGCAG+GGG | - | chr3.1:11282314-11282333 | None:intergenic | 30.0% | |
| TCAAAATTACCATAATGGCA+TGG | + | chr3.1:11282373-11282392 | MS.gene044633:intron | 30.0% | |
| TCTGGAAGAAATTATGCTAA+AGG | - | chr3.1:11282902-11282921 | None:intergenic | 30.0% | |
| TGAAAAAAAAATTAGCCCAG+GGG | - | chr3.1:11282414-11282433 | None:intergenic | 30.0% | |
| TGTATATTTCAGCACAAAGT+AGG | + | chr3.1:11282150-11282169 | MS.gene044633:intron | 30.0% | |
| TTCTTTCAAGAACAGATGTT+TGG | - | chr3.1:11281530-11281549 | None:intergenic | 30.0% | |
| !! | CAAAAGTTTTGTCACATACA+TGG | - | chr3.1:11282823-11282842 | None:intergenic | 30.0% |
| !!! | TTATGGTAATTTTGATGACG+TGG | - | chr3.1:11282368-11282387 | None:intergenic | 30.0% |
| AAGATAGTTGAGATGATCAG+TGG | - | chr3.1:11281668-11281687 | None:intergenic | 35.0% | |
| AATCGTGTCATCTAATTACG+AGG | + | chr3.1:11281807-11281826 | MS.gene044633:CDS | 35.0% | |
| AATTCACCTACTTCTTCTTC+AGG | - | chr3.1:11283396-11283415 | None:intergenic | 35.0% | |
| AGATGACACGATTTCTTTGA+AGG | - | chr3.1:11281800-11281819 | None:intergenic | 35.0% | |
| AGTACAATTTGAAGAGACAG+TGG | - | chr3.1:11281577-11281596 | None:intergenic | 35.0% | |
| CTGATTCTAGTGTAGAAAGT+AGG | + | chr3.1:11282059-11282078 | MS.gene044633:intron | 35.0% | |
| CTTTGCAGGTGCAAAAAAAA+AGG | + | chr3.1:11282663-11282682 | MS.gene044633:intron | 35.0% | |
| GAAATCAACATAAGCCATAG+TGG | - | chr3.1:11281833-11281852 | None:intergenic | 35.0% | |
| GCTAATGCACTCTACTTTAA+AGG | + | chr3.1:11283090-11283109 | MS.gene044633:CDS | 35.0% | |
| GTTAAGCTATCAACTGATCT+TGG | - | chr3.1:11283057-11283076 | None:intergenic | 35.0% | |
| TAGGGAAACATTTGTTTGGT+TGG | - | chr3.1:11281500-11281519 | None:intergenic | 35.0% | |
| TGCATAGGGAAACATTTGTT+TGG | - | chr3.1:11281504-11281523 | None:intergenic | 35.0% | |
| TGCTCTTGGGATTTATTTGA+CGG | + | chr3.1:11282032-11282051 | MS.gene044633:intron | 35.0% | |
| TTCCTTCCAAATGCAAAAGA+TGG | + | chr3.1:11283306-11283325 | MS.gene044633:CDS | 35.0% | |
| ! | AAAAAAGGATTAGCGATTGC+AGG | + | chr3.1:11282678-11282697 | MS.gene044633:intron | 35.0% |
| ! | AAAAAAGGATTAGCGATTGC+AGG | - | chr3.1:11282697-11282678 | None:intergenic | 35.0% |
| ! | AAAAAGGATTAGCGATTGCA+GGG | + | chr3.1:11282679-11282698 | MS.gene044633:intron | 35.0% |
| ! | AAAAAGGATTAGCGATTGCA+GGG | - | chr3.1:11282698-11282679 | None:intergenic | 35.0% |
| ! | AAATGCAAAAGATGGCTTGT+CGG | + | chr3.1:11283314-11283333 | MS.gene044633:CDS | 35.0% |
| ! | AGTTTGAAATCGAATACCCT+CGG | - | chr3.1:11283628-11283647 | None:intergenic | 35.0% |
| ! | GATAACTTTTGTGTGCTCTT+GGG | + | chr3.1:11282019-11282038 | MS.gene044633:intron | 35.0% |
| AAGCTATCAACTGATCTTGG+AGG | - | chr3.1:11283054-11283073 | None:intergenic | 40.0% | |
| AATAAACTGCATCTCCTTGC+TGG | - | chr3.1:11283208-11283227 | None:intergenic | 40.0% | |
| AATCTGAGTTACTACACCAC+AGG | + | chr3.1:11283361-11283380 | MS.gene044633:CDS | 40.0% | |
| ACAGATGTTTGGCAATGCAT+AGG | - | chr3.1:11281519-11281538 | None:intergenic | 40.0% | |
| ACTGGAACCATTCTCTTTGT+TGG | + | chr3.1:11283702-11283721 | MS.gene044633:CDS | 40.0% | |
| AGGATGAAGTGTGTGATTCA+TGG | + | chr3.1:11282094-11282113 | MS.gene044633:intron | 40.0% | |
| AGTCTTCCTGAAGAAGAAGT+AGG | + | chr3.1:11283387-11283406 | MS.gene044633:CDS | 40.0% | |
| ATCTAATTACGAGGCCACTA+TGG | + | chr3.1:11281816-11281835 | MS.gene044633:CDS | 40.0% | |
| CACTTGTCCAACAAAGAGAA+TGG | - | chr3.1:11283712-11283731 | None:intergenic | 40.0% | |
| CAGATGTTTGGCAATGCATA+GGG | - | chr3.1:11281518-11281537 | None:intergenic | 40.0% | |
| CTGATTAGAGAAGATTGGAC+TGG | + | chr3.1:11283684-11283703 | MS.gene044633:CDS | 40.0% | |
| CTTCGTCTTCCGTATAAGAA+AGG | + | chr3.1:11283252-11283271 | MS.gene044633:CDS | 40.0% | |
| CTTTGCAGGGGCAAAAAAAA+AGG | - | chr3.1:11282302-11282321 | None:intergenic | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.1:11281782-11281801 | None:intergenic | 40.0% | |
| GAATTGACCAAAATACCCCT+GGG | + | chr3.1:11282396-11282415 | MS.gene044633:intron | 40.0% | |
| TCCTGGAGGTTTGACAAAAA+TGG | + | chr3.1:11283497-11283516 | MS.gene044633:CDS | 40.0% | |
| TCTCATATGCTGAAAGAGCT+AGG | + | chr3.1:11283456-11283475 | MS.gene044633:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.1:11281783-11281802 | None:intergenic | 40.0% | |
| TGCATTAGCAAAGATGAGTC+TGG | - | chr3.1:11283079-11283098 | None:intergenic | 40.0% | |
| TGGAAAATAAAAGCAGGGCA+TGG | - | chr3.1:11281907-11281926 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | + | chr3.1:11283500-11283519 | MS.gene044633:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr3.1:11283009-11283028 | MS.gene044633:CDS | 40.0% | |
| TTAAGCAACCCCTATTTGCA+GGG | - | chr3.1:11282255-11282274 | None:intergenic | 40.0% | |
| TTTAAGCAACCCCTATTTGC+AGG | - | chr3.1:11282256-11282275 | None:intergenic | 40.0% | |
| ! | AGCCATCTTTTGCATTTGGA+AGG | - | chr3.1:11283311-11283330 | None:intergenic | 40.0% |
| ! | CACTCTACTTTAAAGGAGCA+TGG | + | chr3.1:11283097-11283116 | MS.gene044633:CDS | 40.0% |
| ! | GACAAGCCATCTTTTGCATT+TGG | - | chr3.1:11283315-11283334 | None:intergenic | 40.0% |
| ! | GACACGATTTCTTTGAAGGA+AGG | - | chr3.1:11281796-11281815 | None:intergenic | 40.0% |
| ! | GATGATCAGTGGATTTAGAC+CGG | - | chr3.1:11281657-11281676 | None:intergenic | 40.0% |
| ! | GGATAACTTTTGTGTGCTCT+TGG | + | chr3.1:11282018-11282037 | MS.gene044633:intron | 40.0% |
| ! | GTTTTTCGTCCCTGCAAATA+GGG | + | chr3.1:11282243-11282262 | MS.gene044633:intron | 40.0% |
| ! | TGTTTTTCGTCCCTGCAAAT+AGG | + | chr3.1:11282242-11282261 | MS.gene044633:intron | 40.0% |
| ! | TTTTTCGTCCCTGCAAATAG+GGG | + | chr3.1:11282244-11282263 | MS.gene044633:intron | 40.0% |
| !! | ACCATTTTTGTCAAACCTCC+AGG | - | chr3.1:11283501-11283520 | None:intergenic | 40.0% |
| !! | CTTGTCGGCTTTGGTTAATA+AGG | + | chr3.1:11283329-11283348 | MS.gene044633:CDS | 40.0% |
| !! | TTTGGTTGGTGATCGATTCA+CGG | - | chr3.1:11281486-11281505 | None:intergenic | 40.0% |
| !!! | AAATTAGCCCAGGGGTATTT+TGG | - | chr3.1:11282406-11282425 | None:intergenic | 40.0% |
| AGTGCTGCAATATGTTCCGA+GGG | + | chr3.1:11283609-11283628 | MS.gene044633:CDS | 45.0% | |
| ATGACGTGGCAGTCATTAAC+TGG | + | chr3.1:11282611-11282630 | MS.gene044633:intron | 45.0% | |
| ATGACGTGGCAGTCATTAAC+TGG | - | chr3.1:11282630-11282611 | None:intergenic | 45.0% | |
| CACGACAGAAACAAGCTGAA+AGG | - | chr3.1:11281692-11281711 | None:intergenic | 45.0% | |
| CTTCAGGAAGACTAAACCTG+TGG | - | chr3.1:11283380-11283399 | None:intergenic | 45.0% | |
| GCAGTCATTAACTGGGTCAA+GGG | + | chr3.1:11282619-11282638 | MS.gene044633:intron | 45.0% | |
| GCAGTCATTAACTGGGTCAA+GGG | - | chr3.1:11282638-11282619 | None:intergenic | 45.0% | |
| GGAATTGACCAAAATACCCC+TGG | + | chr3.1:11282395-11282414 | MS.gene044633:intron | 45.0% | |
| GGTCAATTCCCATGCCATTA+TGG | - | chr3.1:11282385-11282404 | None:intergenic | 45.0% | |
| GTTATCCGTCCCTGCAAATA+GGG | - | chr3.1:11282722-11282741 | None:intergenic | 45.0% | |
| TAGTGCTGCAATATGTTCCG+AGG | + | chr3.1:11283608-11283627 | MS.gene044633:CDS | 45.0% | |
| TATGCTGAAAGAGCTAGGAG+TGG | + | chr3.1:11283461-11283480 | MS.gene044633:CDS | 45.0% | |
| TCGAGAAGCTGTTGTTGTGT+GGG | - | chr3.1:11281628-11281647 | None:intergenic | 45.0% | |
| TGACGTGGCAGTCATTAACT+GGG | + | chr3.1:11282612-11282631 | MS.gene044633:intron | 45.0% | |
| TGACGTGGCAGTCATTAACT+GGG | - | chr3.1:11282631-11282612 | None:intergenic | 45.0% | |
| TGTTATCCGTCCCTGCAAAT+AGG | - | chr3.1:11282723-11282742 | None:intergenic | 45.0% | |
| TTAAGCGACCCCTATTTGCA+GGG | + | chr3.1:11282710-11282729 | MS.gene044633:intron | 45.0% | |
| TTATCCGTCCCTGCAAATAG+GGG | - | chr3.1:11282721-11282740 | None:intergenic | 45.0% | |
| TTTAAGCGACCCCTATTTGC+AGG | + | chr3.1:11282709-11282728 | MS.gene044633:intron | 45.0% | |
| ! | AGGGCATGGATTGAAAGAGT+GGG | - | chr3.1:11281893-11281912 | None:intergenic | 45.0% |
| ! | GTCGGCTTTGGTTAATAAGG+TGG | + | chr3.1:11283332-11283351 | MS.gene044633:CDS | 45.0% |
| ! | GTTTTACCTTTCACTCCTGG+AGG | + | chr3.1:11283483-11283502 | MS.gene044633:CDS | 45.0% |
| ! | TCACCTTTTGAATGGCAGCT+CGG | + | chr3.1:11283161-11283180 | MS.gene044633:CDS | 45.0% |
| !! | AAAAGATGGCTTGTCGGCTT+TGG | + | chr3.1:11283320-11283339 | MS.gene044633:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCACTCC+TGG | + | chr3.1:11283480-11283499 | MS.gene044633:CDS | 45.0% |
| AACAGCTTCTCGACTTCCTC+CGG | + | chr3.1:11281635-11281654 | MS.gene044633:CDS | 50.0% | |
| AACCCATACACCACTGACGA+AGG | - | chr3.1:11281752-11281771 | None:intergenic | 50.0% | |
| CTCCTTCGTCAGTGGTGTAT+GGG | + | chr3.1:11281747-11281766 | MS.gene044633:CDS | 50.0% | |
| GGCAGTCATTAACTGGGTCA+AGG | + | chr3.1:11282618-11282637 | MS.gene044633:intron | 50.0% | |
| GGCAGTCATTAACTGGGTCA+AGG | - | chr3.1:11282637-11282618 | None:intergenic | 50.0% | |
| GGGGGTAGACAAACATACCT+TGG | - | chr3.1:11281860-11281879 | None:intergenic | 50.0% | |
| GTACTAAGCATCATCGCTGC+TGG | + | chr3.1:11281592-11281611 | MS.gene044633:CDS | 50.0% | |
| GTCAAACCTCCAGGAGTGAA+AGG | - | chr3.1:11283492-11283511 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGTTGTTGTG+TGG | - | chr3.1:11281629-11281648 | None:intergenic | 50.0% | |
| TCCTTGCTGGTCGTCATGAA+GGG | - | chr3.1:11283195-11283214 | None:intergenic | 50.0% | |
| TCTCCTTCGTCAGTGGTGTA+TGG | + | chr3.1:11281746-11281765 | MS.gene044633:CDS | 50.0% | |
| TGACCGAGCTGCCATTCAAA+AGG | - | chr3.1:11283167-11283186 | None:intergenic | 50.0% | |
| TTTGAATGGCAGCTCGGTCA+AGG | + | chr3.1:11283167-11283186 | MS.gene044633:CDS | 50.0% | |
| ! | ATGGATTGAAAGAGTGGGGG+GGG | - | chr3.1:11281888-11281907 | None:intergenic | 50.0% |
| ! | CAGGGCATGGATTGAAAGAG+TGG | - | chr3.1:11281894-11281913 | None:intergenic | 50.0% |
| ! | CATGGATTGAAAGAGTGGGG+GGG | - | chr3.1:11281889-11281908 | None:intergenic | 50.0% |
| ! | GATCAGTGGATTTAGACCGG+AGG | - | chr3.1:11281654-11281673 | None:intergenic | 50.0% |
| ! | GCATGGATTGAAAGAGTGGG+GGG | - | chr3.1:11281890-11281909 | None:intergenic | 50.0% |
| ! | GGCATGGATTGAAAGAGTGG+GGG | - | chr3.1:11281891-11281910 | None:intergenic | 50.0% |
| ! | GGGCATGGATTGAAAGAGTG+GGG | - | chr3.1:11281892-11281911 | None:intergenic | 50.0% |
| CTCCTTGCTGGTCGTCATGA+AGG | - | chr3.1:11283196-11283215 | None:intergenic | 55.0% | |
| TCCCTTCATGACGACCAGCA+AGG | + | chr3.1:11283191-11283210 | MS.gene044633:CDS | 55.0% | |
| TGGATTGAAAGAGTGGGGGG+GGG | - | chr3.1:11281887-11281906 | None:intergenic | 55.0% | |
| !! | ATCATCGCTGCTGGCTCTGA+GGG | + | chr3.1:11281601-11281620 | MS.gene044633:CDS | 55.0% |
| ATTGAAAGAGTGGGGGGGGG+GGG | - | chr3.1:11281884-11281903 | None:intergenic | 60.0% | |
| CCACTGACGAAGGAGAGTCG+AGG | - | chr3.1:11281742-11281761 | None:intergenic | 60.0% | |
| CCTCGACTCTCCTTCGTCAG+TGG | + | chr3.1:11281739-11281758 | MS.gene044633:CDS | 60.0% | |
| GAGAGTCGAGGTCCACCTGT+GGG | - | chr3.1:11281730-11281749 | None:intergenic | 60.0% | |
| GATTGAAAGAGTGGGGGGGG+GGG | - | chr3.1:11281885-11281904 | None:intergenic | 60.0% | |
| GCGACCCCTATTTGCAGGGA+CGG | + | chr3.1:11282714-11282733 | MS.gene044633:intron | 60.0% | |
| GGATTGAAAGAGTGGGGGGG+GGG | - | chr3.1:11281886-11281905 | None:intergenic | 60.0% | |
| TCCACCTGTGGGAGCAGCAT+CGG | - | chr3.1:11281719-11281738 | None:intergenic | 60.0% | |
| !! | CATCATCGCTGCTGGCTCTG+AGG | + | chr3.1:11281600-11281619 | MS.gene044633:CDS | 60.0% |
| CTCTCCGATGCTGCTCCCAC+AGG | + | chr3.1:11281712-11281731 | MS.gene044633:CDS | 65.0% | |
| GGAGAGTCGAGGTCCACCTG+TGG | - | chr3.1:11281731-11281750 | None:intergenic | 65.0% | |
| TCCGATGCTGCTCCCACAGG+TGG | + | chr3.1:11281715-11281734 | MS.gene044633:CDS | 65.0% | |
| TTGAAAGAGTGGGGGGGGGG+GGG | - | chr3.1:11281883-11281902 | None:intergenic | 65.0% | |
| TGAAAGAGTGGGGGGGGGGG+GGG | - | chr3.1:11281882-11281901 | None:intergenic | 70.0% | |
| AAAGAGTGGGGGGGGGGGGG+GGG | - | chr3.1:11281880-11281899 | None:intergenic | 75.0% | |
| GAAAGAGTGGGGGGGGGGGG+GGG | - | chr3.1:11281881-11281900 | None:intergenic | 75.0% | |
| ! | AAGAGTGGGGGGGGGGGGGG+GGG | - | chr3.1:11281879-11281898 | None:intergenic | 80.0% |
| ! | AGAGTGGGGGGGGGGGGGGG+GGG | - | chr3.1:11281878-11281897 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 11281475 | 11283752 | 11281475 | ID=MS.gene044633 |
| chr3.1 | mRNA | 11281475 | 11283752 | 11281475 | ID=MS.gene044633.t1;Parent=MS.gene044633 |
| chr3.1 | exon | 11281475 | 11281861 | 11281475 | ID=MS.gene044633.t1.exon1;Parent=MS.gene044633.t1 |
| chr3.1 | CDS | 11281475 | 11281861 | 11281475 | ID=cds.MS.gene044633.t1;Parent=MS.gene044633.t1 |
| chr3.1 | exon | 11282979 | 11283752 | 11282979 | ID=MS.gene044633.t1.exon2;Parent=MS.gene044633.t1 |
| chr3.1 | CDS | 11282979 | 11283752 | 11282979 | ID=cds.MS.gene044633.t1;Parent=MS.gene044633.t1 |
| Gene Sequence |
| Protein sequence |
