Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04476.t1 | XP_013460180.1 | 98.5 | 472 | 7 | 0 | 44 | 515 | 45 | 516 | 1.20E-274 | 955.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04476.t1 | O82390 | 81.3 | 470 | 81 | 3 | 48 | 515 | 48 | 512 | 1.4e-223 | 776.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04476.t1 | G7ZYH1 | 98.5 | 472 | 7 | 0 | 44 | 515 | 45 | 516 | 8.4e-275 | 955.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04476 | MS.gene40160 | PPI |
| MS.gene04476 | MS.gene93642 | PPI |
| MS.gene04476 | MS.gene028573 | PPI |
| MS.gene04476 | MS.gene45934 | PPI |
| MS.gene67345 | MS.gene04476 | PPI |
| MS.gene04476 | MS.gene054996 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04476.t1 | MTR_3g463080 | 97.868 | 516 | 10 | 1 | 1 | 515 | 1 | 516 | 0.0 | 1019 |
| MS.gene04476.t1 | MTR_8g030600 | 75.214 | 468 | 108 | 3 | 56 | 515 | 121 | 588 | 0.0 | 734 |
| MS.gene04476.t1 | MTR_7g077830 | 79.446 | 433 | 87 | 1 | 85 | 515 | 102 | 534 | 0.0 | 733 |
| MS.gene04476.t1 | MTR_8g030600 | 73.057 | 386 | 96 | 3 | 56 | 433 | 121 | 506 | 0.0 | 589 |
| MS.gene04476.t1 | MTR_7g066780 | 37.805 | 492 | 301 | 4 | 26 | 514 | 17 | 506 | 1.11e-112 | 343 |
| MS.gene04476.t1 | MTR_4g116030 | 37.761 | 527 | 301 | 12 | 7 | 511 | 3 | 524 | 9.05e-111 | 339 |
| MS.gene04476.t1 | MTR_2g027710 | 82.759 | 174 | 30 | 0 | 305 | 478 | 61 | 234 | 4.53e-104 | 312 |
| MS.gene04476.t1 | MTR_5g069630 | 41.045 | 402 | 230 | 2 | 119 | 513 | 111 | 512 | 2.30e-96 | 301 |
| MS.gene04476.t1 | MTR_4g030900 | 37.642 | 441 | 247 | 7 | 102 | 515 | 4 | 443 | 7.17e-83 | 264 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04476.t1 | AT2G29650 | 76.983 | 517 | 112 | 3 | 1 | 515 | 1 | 512 | 0.0 | 783 |
| MS.gene04476.t1 | AT4G00370 | 76.923 | 455 | 101 | 2 | 65 | 515 | 87 | 541 | 0.0 | 732 |
| MS.gene04476.t1 | AT2G29650 | 87.056 | 394 | 51 | 0 | 122 | 515 | 7 | 400 | 0.0 | 708 |
| MS.gene04476.t1 | AT2G29650 | 87.436 | 390 | 49 | 0 | 126 | 515 | 1 | 390 | 0.0 | 702 |
| MS.gene04476.t1 | AT2G29650 | 72.457 | 403 | 104 | 3 | 1 | 401 | 1 | 398 | 0.0 | 563 |
| MS.gene04476.t1 | AT2G38060 | 39.364 | 503 | 283 | 8 | 32 | 513 | 10 | 511 | 2.19e-112 | 343 |
| MS.gene04476.t1 | AT5G20380 | 42.417 | 422 | 233 | 7 | 97 | 511 | 90 | 508 | 6.14e-106 | 326 |
| MS.gene04476.t1 | AT3G46980 | 39.787 | 470 | 270 | 5 | 57 | 513 | 58 | 527 | 8.36e-106 | 327 |
| MS.gene04476.t1 | AT3G46980 | 39.787 | 470 | 270 | 5 | 57 | 513 | 58 | 527 | 8.86e-106 | 327 |
| MS.gene04476.t1 | AT5G20380 | 42.417 | 422 | 233 | 7 | 97 | 511 | 142 | 560 | 2.00e-105 | 327 |
| MS.gene04476.t1 | AT3G46980 | 39.787 | 470 | 270 | 5 | 57 | 513 | 106 | 575 | 3.72e-105 | 326 |
| MS.gene04476.t1 | AT2G38060 | 40.488 | 410 | 233 | 4 | 61 | 460 | 49 | 457 | 4.47e-95 | 300 |
| MS.gene04476.t1 | AT3G46980 | 40.634 | 347 | 198 | 3 | 175 | 513 | 1 | 347 | 5.05e-83 | 262 |
| MS.gene04476.t1 | AT3G46980 | 40.634 | 347 | 198 | 3 | 175 | 513 | 1 | 347 | 5.05e-83 | 262 |
| MS.gene04476.t1 | AT3G46980 | 40.634 | 347 | 198 | 3 | 175 | 513 | 1 | 347 | 5.28e-83 | 261 |
| MS.gene04476.t1 | AT3G46980 | 40.634 | 347 | 198 | 3 | 175 | 513 | 1 | 347 | 5.28e-83 | 261 |
| MS.gene04476.t1 | AT5G44370 | 36.552 | 435 | 245 | 7 | 103 | 515 | 7 | 432 | 1.68e-80 | 258 |
| MS.gene04476.t1 | AT3G46980 | 38.298 | 282 | 166 | 3 | 240 | 513 | 2 | 283 | 5.47e-60 | 199 |
Find 141 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCAATTTCTGCAAATTT+TGG | 0.155639 | 3.4:-58400816 | MS.gene04476:CDS |
| TAGTACAGTCTTCTTTCTTT+TGG | 0.193133 | 3.4:-58402483 | MS.gene04476:CDS |
| TGAATAATATTCTGTCAAAA+TGG | 0.210887 | 3.4:-58402033 | MS.gene04476:CDS |
| GGCAAAAGTGGGACACTATC+AGG | 0.253332 | 3.4:+58401564 | None:intergenic |
| ATGCAAACAGTTGGGTTTCT+TGG | 0.260195 | 3.4:-58400637 | MS.gene04476:CDS |
| TGCAGATTGCTGGTGGAATA+TGG | 0.288175 | 3.4:-58402351 | MS.gene04476:intron |
| GGTTTCAGTTGGGCTATATT+TGG | 0.289577 | 3.4:-58399412 | MS.gene04476:CDS |
| CCTTTCCTGATTCACCAGTA+TGG | 0.295712 | 3.4:-58401926 | MS.gene04476:CDS |
| AAGTTCAATCTTACAGAATC+TGG | 0.297006 | 3.4:-58400867 | MS.gene04476:CDS |
| TTGGTTCTCTAGGAACAATT+TGG | 0.318484 | 3.4:-58401880 | MS.gene04476:CDS |
| GTTTGGCAGCTACGGGAGTT+AGG | 0.354746 | 3.4:+58402263 | None:intergenic |
| ATAACAATAACCCATCTCTT+AGG | 0.357009 | 3.4:+58403785 | None:intergenic |
| AATCCACTTACAGAATATCT+AGG | 0.360361 | 3.4:+58399933 | None:intergenic |
| ATTAGTTGCCCGTGCATTCA+TGG | 0.371690 | 3.4:-58402224 | MS.gene04476:CDS |
| TAGAAAAGGCAATCCAAGTT+TGG | 0.374667 | 3.4:+58402246 | None:intergenic |
| ATCTAGGGGCTATATCTTGA+TGG | 0.391646 | 3.4:+58399949 | None:intergenic |
| GCCATCCATACTGGTGAATC+AGG | 0.393766 | 3.4:+58401921 | None:intergenic |
| TATTTCCTTCACAGGTTCCT+TGG | 0.393829 | 3.4:+58401625 | None:intergenic |
| AGATACTTGTTGCAGATTGC+TGG | 0.402333 | 3.4:-58402361 | MS.gene04476:intron |
| CAATGTCAGCAGAGTACAAC+TGG | 0.414950 | 3.4:-58402525 | MS.gene04476:CDS |
| GCCCGTGCATTCATGGGAAT+TGG | 0.421683 | 3.4:-58402217 | MS.gene04476:CDS |
| ACCTGTGAAGGAAATACCTT+GGG | 0.422628 | 3.4:-58401618 | MS.gene04476:CDS |
| TAAGAAAGTAGTAAGTGGTT+TGG | 0.423850 | 3.4:-58403864 | MS.gene04476:CDS |
| AGCTAGCACTCCAGCAGTAT+TGG | 0.431527 | 3.4:+58399772 | None:intergenic |
| CCCCAAGGTATTTCCTTCAC+AGG | 0.432539 | 3.4:+58401617 | None:intergenic |
| ACACTGATGGCCATCCATAC+TGG | 0.434066 | 3.4:+58401912 | None:intergenic |
| GAACTTTCATTCTTCTTACA+TGG | 0.440920 | 3.4:-58401532 | MS.gene04476:CDS |
| GGTGATGATGTTGAGGTAGA+AGG | 0.444357 | 3.4:-58403839 | MS.gene04476:CDS |
| GTCCTTGGAACAGCAGCAAC+AGG | 0.445368 | 3.4:-58399746 | MS.gene04476:CDS |
| GAATAATATTCTGTCAAAAT+GGG | 0.446232 | 3.4:-58402032 | MS.gene04476:CDS |
| TGCAGATAATGCAAACAGTT+GGG | 0.451193 | 3.4:-58400645 | MS.gene04476:intron |
| CAATCCAAGTTTGGCAGCTA+CGG | 0.451750 | 3.4:+58402255 | None:intergenic |
| ACTCCCGTAGCTGCCAAACT+TGG | 0.453418 | 3.4:-58402259 | MS.gene04476:CDS |
| CTTACTTGATTATAGTATGT+TGG | 0.454637 | 3.4:+58401506 | None:intergenic |
| GGAGTGCTAGCTGGTGTCCT+TGG | 0.456716 | 3.4:-58399761 | MS.gene04476:CDS |
| TTGCAGATAATGCAAACAGT+TGG | 0.460476 | 3.4:-58400646 | MS.gene04476:intron |
| ACTGATGCATTCTCTCAGTC+TGG | 0.465048 | 3.4:-58399984 | MS.gene04476:CDS |
| TTTGTCGAAACCACCAGTTT+GGG | 0.469448 | 3.4:-58401588 | MS.gene04476:CDS |
| TCAGTTGGGCTATATTTGGT+TGG | 0.470220 | 3.4:-58399408 | MS.gene04476:CDS |
| ACACCTTCCCTCTTCCTCTC+CGG | 0.472346 | 3.4:+58403954 | None:intergenic |
| ATCCACTTACAGAATATCTA+GGG | 0.477960 | 3.4:+58399934 | None:intergenic |
| CTCGGTCTATCCAATACTGC+TGG | 0.479482 | 3.4:-58399782 | MS.gene04476:CDS |
| CTGTGTCACCGGAGAGGAAG+AGG | 0.479989 | 3.4:-58403962 | MS.gene04476:CDS |
| TTCCCCAGTTGTGGCAAAAG+TGG | 0.480489 | 3.4:+58401552 | None:intergenic |
| TAGCATTTGGCGTCATTTGG+TGG | 0.480914 | 3.4:-58402300 | MS.gene04476:CDS |
| GCAGATTGCTGGTGGAATAT+GGG | 0.485868 | 3.4:-58402350 | MS.gene04476:intron |
| TTACTAGGGTGTTGCTATGC+CGG | 0.487176 | 3.4:-58402059 | MS.gene04476:intron |
| CCTTGGATCGGTCACTGGAT+TGG | 0.489429 | 3.4:-58401957 | MS.gene04476:CDS |
| TCATACTTACTTGATGCCTC+TGG | 0.490752 | 3.4:+58403902 | None:intergenic |
| CCCGAGGTGTATCTGTTACA+AGG | 0.491771 | 3.4:-58400767 | MS.gene04476:CDS |
| CATTGCACCTGCTGTGTCAC+CGG | 0.492613 | 3.4:-58403973 | MS.gene04476:CDS |
| TTCCTCTCCGGTGACACAGC+AGG | 0.496137 | 3.4:+58403966 | None:intergenic |
| AGTTGAGTTAAGAAGAAAGC+AGG | 0.501347 | 3.4:+58400613 | None:intergenic |
| GTTGTGTATGACTTGCAGTC+AGG | 0.504023 | 3.4:-58400560 | MS.gene04476:intron |
| GACACTATCAGGGCCCAAAC+TGG | 0.504125 | 3.4:+58401575 | None:intergenic |
| GAGAAGTAGATCATTAGCTC+TGG | 0.509100 | 3.4:-58401996 | MS.gene04476:CDS |
| GTGAATCAGGAAAGGTGAAA+AGG | 0.509896 | 3.4:+58401934 | None:intergenic |
| AATCCAAGTTTGGCAGCTAC+GGG | 0.510619 | 3.4:+58402256 | None:intergenic |
| GAAGAAGAAGAAGGTGATGG+TGG | 0.511806 | 3.4:+58404058 | None:intergenic |
| CACAGCAGGTGCAATGGAAA+CGG | 0.512666 | 3.4:+58403980 | None:intergenic |
| ATGTACCTTGGATCGGTCAC+TGG | 0.517053 | 3.4:-58401962 | MS.gene04476:CDS |
| TTAGTTGCCCGTGCATTCAT+GGG | 0.520099 | 3.4:-58402223 | MS.gene04476:CDS |
| GTTCATAAGAAAGTAGTAAG+TGG | 0.520316 | 3.4:-58403869 | MS.gene04476:CDS |
| AAGGAACAAGCTCTTCTCCT+TGG | 0.521751 | 3.4:-58403820 | MS.gene04476:CDS |
| GACAGAATATTATTCATGGC+CGG | 0.522317 | 3.4:+58402040 | None:intergenic |
| GCACGGGCAACTAATAGAAA+AGG | 0.522495 | 3.4:+58402232 | None:intergenic |
| TCCTGATTCACCAGTATGGA+TGG | 0.522690 | 3.4:-58401922 | MS.gene04476:CDS |
| CACCAATTCCCATGAATGCA+CGG | 0.527914 | 3.4:+58402215 | None:intergenic |
| GGAGAGGAAGAGGGAAGGTG+TGG | 0.529959 | 3.4:-58403952 | MS.gene04476:CDS |
| AAGAAGTTGATTGCTACAAA+CGG | 0.531136 | 3.4:-58401653 | MS.gene04476:CDS |
| TGAATGGTTGATGAGAGTTC+TGG | 0.533134 | 3.4:+58404009 | None:intergenic |
| GTATACAGTGGCATGTACCT+TGG | 0.538242 | 3.4:-58401974 | MS.gene04476:CDS |
| GAGAGGAAGAGGGAAGGTGT+GGG | 0.541836 | 3.4:-58403951 | MS.gene04476:CDS |
| AATACTGCTGGAGTGCTAGC+TGG | 0.544126 | 3.4:-58399770 | MS.gene04476:CDS |
| AACCTGTGAAGGAAATACCT+TGG | 0.548334 | 3.4:-58401619 | MS.gene04476:CDS |
| AGAGGCATCAAGTAAGTATG+AGG | 0.551649 | 3.4:-58403900 | MS.gene04476:CDS |
| GAACAAGCTCTTCTCCTTGG+TGG | 0.552276 | 3.4:-58403817 | MS.gene04476:CDS |
| AACAAGCTCTTCTCCTTGGT+GGG | 0.552346 | 3.4:-58403816 | MS.gene04476:CDS |
| GAATGAAAGTTCCCCAGTTG+TGG | 0.554343 | 3.4:+58401543 | None:intergenic |
| CAGTTGTACTCTGCTGACAT+TGG | 0.556876 | 3.4:+58402526 | None:intergenic |
| CCACATTGATTCTCCTGTGG+TGG | 0.558004 | 3.4:-58400587 | MS.gene04476:CDS |
| CGGTGACACAGCAGGTGCAA+TGG | 0.559969 | 3.4:+58403974 | None:intergenic |
| GGGAGTTAGGATTGTGGCAA+CGG | 0.560055 | 3.4:+58402276 | None:intergenic |
| ATCTGTTACAAGGGTTCGCA+AGG | 0.562047 | 3.4:-58400757 | MS.gene04476:intron |
| AAAGTAGTAAGTGGTTTGGA+TGG | 0.562988 | 3.4:-58403860 | MS.gene04476:CDS |
| TTGGGGATACCTCCTCACTC+AGG | 0.564095 | 3.4:-58402464 | MS.gene04476:intron |
| ATGTTAAGTCTGAGAAGCAT+GGG | 0.564348 | 3.4:-58403925 | MS.gene04476:CDS |
| TCTTCTCAGGGGATATTGCT+CGG | 0.566814 | 3.4:-58399800 | MS.gene04476:intron |
| GGAATATGGGCTGACACAGT+GGG | 0.567890 | 3.4:-58402337 | MS.gene04476:CDS |
| AGGTGCAATGGAAACGGAGA+AGG | 0.568561 | 3.4:+58403986 | None:intergenic |
| CCGAGGTGTATCTGTTACAA+GGG | 0.569335 | 3.4:-58400766 | MS.gene04476:CDS |
| GATCTACTTCTCTCTGCCAC+AGG | 0.573723 | 3.4:+58402007 | None:intergenic |
| TGTACTAAACCTACAGTGGT+GGG | 0.573906 | 3.4:+58402499 | None:intergenic |
| ACCAATTCCCATGAATGCAC+GGG | 0.574833 | 3.4:+58402216 | None:intergenic |
| GTCTGAGAAGCATGGGCCAG+AGG | 0.575496 | 3.4:-58403918 | MS.gene04476:CDS |
| TTCGACAAAATTAATCCCCA+AGG | 0.576040 | 3.4:+58401602 | None:intergenic |
| TGGAATATGGGCTGACACAG+TGG | 0.577010 | 3.4:-58402338 | MS.gene04476:CDS |
| TCCCCAGTTGTGGCAAAAGT+GGG | 0.577515 | 3.4:+58401553 | None:intergenic |
| TTTGGATGGTGATGATGTTG+AGG | 0.582526 | 3.4:-58403846 | MS.gene04476:CDS |
| CGCATTTCAGGATCATCAAG+TGG | 0.585309 | 3.4:+58401686 | None:intergenic |
| CTGTACTAAACCTACAGTGG+TGG | 0.586896 | 3.4:+58402498 | None:intergenic |
| GATGTTAAGTCTGAGAAGCA+TGG | 0.588801 | 3.4:-58403926 | MS.gene04476:CDS |
| GCAAAAGTGGGACACTATCA+GGG | 0.591083 | 3.4:+58401565 | None:intergenic |
| AATTGTTCCTAGAGAACCAA+AGG | 0.595025 | 3.4:+58401883 | None:intergenic |
| TGTGTCACCGGAGAGGAAGA+GGG | 0.604856 | 3.4:-58403961 | MS.gene04476:CDS |
| TACTTGTTGCAGATTGCTGG+TGG | 0.606708 | 3.4:-58402358 | MS.gene04476:intron |
| CCAATCCAGTGACCGATCCA+AGG | 0.609770 | 3.4:+58401957 | None:intergenic |
| AACCTGTTGCTGCTGTTCCA+AGG | 0.609936 | 3.4:+58399744 | None:intergenic |
| GCTATATTTGGTTGGAACCG+TGG | 0.610518 | 3.4:-58399400 | MS.gene04476:CDS |
| ATGGAAACGGAGAAGGTGAA+TGG | 0.615461 | 3.4:+58403993 | None:intergenic |
| CAGTGGCATGTACCTTGGAT+CGG | 0.616265 | 3.4:-58401969 | MS.gene04476:CDS |
| CCCTTGTAACAGATACACCT+CGG | 0.616464 | 3.4:+58400766 | None:intergenic |
| AACTGGAACCCCACCACTGT+AGG | 0.618941 | 3.4:-58402508 | MS.gene04476:CDS |
| GTTGAGTTAAGAAGAAAGCA+GGG | 0.621263 | 3.4:+58400614 | None:intergenic |
| CCTTGTAACAGATACACCTC+GGG | 0.624936 | 3.4:+58400767 | None:intergenic |
| TCTGTCAAAATGGGTTCCTG+TGG | 0.627501 | 3.4:-58402023 | MS.gene04476:CDS |
| CCAAAGGAGTAAAACACTGA+TGG | 0.628506 | 3.4:+58401899 | None:intergenic |
| ACAGGTTACATTCTGCAGCA+TGG | 0.629656 | 3.4:-58399728 | MS.gene04476:intron |
| CCATACTGGTGAATCAGGAA+AGG | 0.630298 | 3.4:+58401926 | None:intergenic |
| GAAATTGCCATAGTAAGCCA+TGG | 0.638270 | 3.4:+58400828 | None:intergenic |
| ATTTGGTTGGAACCGTGGTG+TGG | 0.639464 | 3.4:-58399395 | MS.gene04476:CDS |
| CACTTGATGATCCTGAAATG+CGG | 0.647130 | 3.4:-58401685 | MS.gene04476:CDS |
| TGCATTCATGGGAATTGGTG+AGG | 0.647999 | 3.4:-58402212 | MS.gene04476:intron |
| ATACACAACACAGCCACCAC+AGG | 0.650207 | 3.4:+58400574 | None:intergenic |
| GTACTAAACCTACAGTGGTG+GGG | 0.651673 | 3.4:+58402500 | None:intergenic |
| ACTATCAGGGCCCAAACTGG+TGG | 0.653748 | 3.4:+58401578 | None:intergenic |
| CACCTGCTGTGTCACCGGAG+AGG | 0.665468 | 3.4:-58403968 | MS.gene04476:CDS |
| GAGCCACATTGATTCTCCTG+TGG | 0.666663 | 3.4:-58400590 | MS.gene04476:CDS |
| AGACTGTACTAAACCTACAG+TGG | 0.666932 | 3.4:+58402495 | None:intergenic |
| AGCTACGGGAGTTAGGATTG+TGG | 0.669995 | 3.4:+58402270 | None:intergenic |
| TCACCGGAGAGGAAGAGGGA+AGG | 0.672873 | 3.4:-58403957 | MS.gene04476:CDS |
| TCCACTTACAGAATATCTAG+GGG | 0.679967 | 3.4:+58399935 | None:intergenic |
| TGAAACCACATACCTGAGTG+AGG | 0.683840 | 3.4:+58402452 | None:intergenic |
| AGAGTTCTGGTACGTGACAG+TGG | 0.687788 | 3.4:+58404022 | None:intergenic |
| GCAGACACTCTTGTAACCCG+AGG | 0.688978 | 3.4:-58400783 | MS.gene04476:CDS |
| ATATGGGCTGACACAGTGGG+AGG | 0.689041 | 3.4:-58402334 | MS.gene04476:CDS |
| TCATTAGCTCTGGTATACAG+TGG | 0.696345 | 3.4:-58401986 | MS.gene04476:CDS |
| CGAGAAAAGGTTCCACACCA+CGG | 0.697691 | 3.4:+58399383 | None:intergenic |
| AACCACATACCTGAGTGAGG+AGG | 0.707329 | 3.4:+58402455 | None:intergenic |
| CCACCACAGGAGAATCAATG+TGG | 0.729771 | 3.4:+58400587 | None:intergenic |
| CCTGTGAAGGAAATACCTTG+GGG | 0.772599 | 3.4:-58401617 | MS.gene04476:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAAATTACAAAAAAGT+TGG | - | chr3.4:58399798-58399817 | MS.gene04476:intron | 10.0% |
| !!! | AATTTTATTATATCTCTTTA+TGG | - | chr3.4:58403832-58403851 | MS.gene04476:CDS | 10.0% |
| !! | GAATAAATCAAGTATAAATA+TGG | + | chr3.4:58402485-58402504 | None:intergenic | 15.0% |
| !! | TTATTCTTACTAAATGTTAA+TGG | - | chr3.4:58403765-58403784 | MS.gene04476:CDS | 15.0% |
| !!! | TATTTTCAAATTTATATCAC+AGG | - | chr3.4:58402555-58402574 | MS.gene04476:intron | 15.0% |
| !! | AAAACAGTTTATAGCTTATA+CGG | - | chr3.4:58400321-58400340 | MS.gene04476:intron | 20.0% |
| !! | AAACTTAAAATATTACGTGA+AGG | - | chr3.4:58403802-58403821 | MS.gene04476:CDS | 20.0% |
| !! | AAAGAAATAGTTTCAATTTG+TGG | + | chr3.4:58402114-58402133 | None:intergenic | 20.0% |
| !! | AAGAAAAACTAAAAAAGAGA+AGG | + | chr3.4:58402740-58402759 | None:intergenic | 20.0% |
| !! | AAGTGAAATGTAATTGATTA+AGG | - | chr3.4:58400196-58400215 | MS.gene04476:intron | 20.0% |
| !! | AATAAGTTGTTTATCCAAAT+AGG | - | chr3.4:58400402-58400421 | MS.gene04476:intron | 20.0% |
| !! | AGTGAAATGTAATTGATTAA+GGG | - | chr3.4:58400197-58400216 | MS.gene04476:intron | 20.0% |
| !! | ATAAGTTGTTTATCCAAATA+GGG | - | chr3.4:58400403-58400422 | MS.gene04476:intron | 20.0% |
| !! | ATGATAATTTCTCAATTCAA+TGG | + | chr3.4:58402344-58402363 | None:intergenic | 20.0% |
| !! | ATTACAAAAAAGTTGGATAT+TGG | - | chr3.4:58399805-58399824 | MS.gene04476:intron | 20.0% |
| !! | GAATAATATTCTGTCAAAAT+GGG | - | chr3.4:58401418-58401437 | MS.gene04476:intron | 20.0% |
| !! | GTTAAAAACTAATCTAAACT+AGG | + | chr3.4:58400436-58400455 | None:intergenic | 20.0% |
| !! | GTTATTACTCTTATTGTAAT+TGG | - | chr3.4:58400167-58400186 | MS.gene04476:intron | 20.0% |
| !! | GTTTATTAATAGAAATACCT+TGG | + | chr3.4:58402169-58402188 | None:intergenic | 20.0% |
| !! | TGAATAATATTCTGTCAAAA+TGG | - | chr3.4:58401417-58401436 | MS.gene04476:intron | 20.0% |
| !! | TTTCATTCTTATTAACTAAG+AGG | - | chr3.4:58400485-58400504 | MS.gene04476:intron | 20.0% |
| !!! | ATAAAAAAACCTTGATGTTT+TGG | - | chr3.4:58400643-58400662 | MS.gene04476:CDS | 20.0% |
| !!! | CAAGTAAGTTTTTCTTTTTT+TGG | - | chr3.4:58401959-58401978 | MS.gene04476:CDS | 20.0% |
| !!! | TTAGATTAGTTTTTAACCTA+TGG | - | chr3.4:58400439-58400458 | MS.gene04476:intron | 20.0% |
| !!! | TTTTGACAGAATATTATTCA+TGG | + | chr3.4:58401417-58401436 | None:intergenic | 20.0% |
| ! | AAATAAGTAAAGAGAATGGA+TGG | + | chr3.4:58403992-58404011 | None:intergenic | 25.0% |
| ! | AACTTAATGAGTTAGTTAGT+TGG | + | chr3.4:58400074-58400093 | None:intergenic | 25.0% |
| ! | AAGAAGATAATCAACCTAAA+AGG | + | chr3.4:58402290-58402309 | None:intergenic | 25.0% |
| ! | ACTTTCTCCAGAAATATTTA+AGG | + | chr3.4:58403008-58403027 | None:intergenic | 25.0% |
| ! | AGAAGATAATCAACCTAAAA+GGG | + | chr3.4:58402289-58402308 | None:intergenic | 25.0% |
| ! | AGGAAAAATTTAAACAAGTG+AGG | + | chr3.4:58403437-58403456 | None:intergenic | 25.0% |
| ! | AGGTAAAAATTAAATGTGCA+TGG | + | chr3.4:58400126-58400145 | None:intergenic | 25.0% |
| ! | ATCAAATCATTACTAGTATC+AGG | + | chr3.4:58401305-58401324 | None:intergenic | 25.0% |
| ! | ATTCACAATCCTTCATATTA+CGG | - | chr3.4:58400600-58400619 | MS.gene04476:CDS | 25.0% |
| ! | ATTTATGGCTATGTAATCAT+AGG | - | chr3.4:58400747-58400766 | MS.gene04476:intron | 25.0% |
| ! | ATTTCCTATATATCTTCTCA+GGG | - | chr3.4:58403638-58403657 | MS.gene04476:intron | 25.0% |
| ! | CAATAGATTATGTTACTATC+AGG | + | chr3.4:58402368-58402387 | None:intergenic | 25.0% |
| ! | CATATAAGATGTTGAAAAAG+TGG | + | chr3.4:58399740-58399759 | None:intergenic | 25.0% |
| ! | CTGAAAATAAGTAAAGAGAA+TGG | + | chr3.4:58403996-58404015 | None:intergenic | 25.0% |
| ! | CTTACTTGATTATAGTATGT+TGG | + | chr3.4:58401947-58401966 | None:intergenic | 25.0% |
| ! | GTAGATACACTTACTAATTT+AGG | - | chr3.4:58399889-58399908 | MS.gene04476:intron | 25.0% |
| ! | TCAAATCATTACTAGTATCA+GGG | + | chr3.4:58401304-58401323 | None:intergenic | 25.0% |
| ! | TGTTAATGGTCAATTTATCT+CGG | - | chr3.4:58403779-58403798 | MS.gene04476:CDS | 25.0% |
| ! | TTTATGGCTATGTAATCATA+GGG | - | chr3.4:58400748-58400767 | MS.gene04476:intron | 25.0% |
| !! | AATGATTTGATTCGTATAGT+TGG | - | chr3.4:58401314-58401333 | MS.gene04476:intron | 25.0% |
| !! | ATGATAAGCAAATGTACTTT+TGG | - | chr3.4:58402082-58402101 | MS.gene04476:intron | 25.0% |
| !! | CTTGTTACTTAGAAGATTTA+TGG | - | chr3.4:58400732-58400751 | MS.gene04476:intron | 25.0% |
| !! | GCTTAACATCATCTAAAATT+AGG | - | chr3.4:58403370-58403389 | MS.gene04476:intron | 25.0% |
| !! | GTTTAAATTTTTCCTGATCA+GGG | - | chr3.4:58403442-58403461 | MS.gene04476:intron | 25.0% |
| !! | TAAGATTTCATCGAAGTATT+AGG | + | chr3.4:58403947-58403966 | None:intergenic | 25.0% |
| !! | TGCTTTTCTTCTATGTAATA+TGG | - | chr3.4:58399700-58399719 | MS.gene04476:intron | 25.0% |
| !! | TGTTTAAATTTTTCCTGATC+AGG | - | chr3.4:58403441-58403460 | MS.gene04476:intron | 25.0% |
| !!! | AGAAACTGTTTTTGAAATAC+TGG | - | chr3.4:58400681-58400700 | MS.gene04476:intron | 25.0% |
| !!! | ATAAGCTGTTTTTAGCTTAT+AGG | - | chr3.4:58400288-58400307 | MS.gene04476:intron | 25.0% |
| !!! | ATGCACATTTAATTTTTACC+TGG | - | chr3.4:58400125-58400144 | MS.gene04476:intron | 25.0% |
| !!! | CAATCTGAAAAGTATCAATT+TGG | - | chr3.4:58403885-58403904 | MS.gene04476:CDS | 25.0% |
| !!! | CATTCTCTTTACTTATTTTC+AGG | - | chr3.4:58403994-58404013 | MS.gene04476:CDS | 25.0% |
| !!! | GAACAATTTGGTTTTGTATA+TGG | - | chr3.4:58401582-58401601 | MS.gene04476:CDS | 25.0% |
| !!! | GTTTTTAGCTTATAGGATAA+CGG | - | chr3.4:58400295-58400314 | MS.gene04476:intron | 25.0% |
| AAGCATTTCTATCGAGAAAA+AGG | + | chr3.4:58401683-58401702 | None:intergenic | 30.0% | |
| AAGTTCAATCTTACAGAATC+TGG | - | chr3.4:58402583-58402602 | MS.gene04476:intron | 30.0% | |
| AATCCACTTACAGAATATCT+AGG | + | chr3.4:58403520-58403539 | None:intergenic | 30.0% | |
| ACTAATCTAAACTAGGCTTA+AGG | + | chr3.4:58400429-58400448 | None:intergenic | 30.0% | |
| ACTTATTTGAGCTTATCTAC+CGG | - | chr3.4:58400233-58400252 | MS.gene04476:intron | 30.0% | |
| AGAGAAGGAAAAAAAGTTGA+AGG | + | chr3.4:58402725-58402744 | None:intergenic | 30.0% | |
| AGCATTTCTATCGAGAAAAA+GGG | + | chr3.4:58401682-58401701 | None:intergenic | 30.0% | |
| AGGGTGTACATATTTCATAA+AGG | + | chr3.4:58401663-58401682 | None:intergenic | 30.0% | |
| ATAACAATAACCCATCTCTT+AGG | + | chr3.4:58399668-58399687 | None:intergenic | 30.0% | |
| ATCCACTTACAGAATATCTA+GGG | + | chr3.4:58403519-58403538 | None:intergenic | 30.0% | |
| CATTTCCTATATATCTTCTC+AGG | - | chr3.4:58403637-58403656 | MS.gene04476:intron | 30.0% | |
| CTCTAATTAGAAACTTCCAT+AGG | + | chr3.4:58400458-58400477 | None:intergenic | 30.0% | |
| GAACTTTCATTCTTCTTACA+TGG | - | chr3.4:58401918-58401937 | MS.gene04476:CDS | 30.0% | |
| GAGAAGGAAAAAAAGTTGAA+GGG | + | chr3.4:58402724-58402743 | None:intergenic | 30.0% | |
| GTCTCATCCTTAAATATTTC+TGG | - | chr3.4:58402998-58403017 | MS.gene04476:intron | 30.0% | |
| GTTCATAAGAAAGTAGTAAG+TGG | - | chr3.4:58399581-58399600 | MS.gene04476:intron | 30.0% | |
| TAAGAAAGTAGTAAGTGGTT+TGG | - | chr3.4:58399586-58399605 | MS.gene04476:intron | 30.0% | |
| TGGATTGTTTACTAAGTATG+CGG | - | chr3.4:58401979-58401998 | MS.gene04476:CDS | 30.0% | |
| TTGCGAATAGCAGAAAATAA+TGG | - | chr3.4:58403065-58403084 | MS.gene04476:intron | 30.0% | |
| TTTCCTATATATCTTCTCAG+GGG | - | chr3.4:58403639-58403658 | MS.gene04476:intron | 30.0% | |
| ! | AAGAAGTTGATTGCTACAAA+CGG | - | chr3.4:58401797-58401816 | MS.gene04476:intron | 30.0% |
| ! | AGTACAGTCTTCTTTCTTTT+GGG | - | chr3.4:58400968-58400987 | MS.gene04476:intron | 30.0% |
| ! | ATGGCAATTTCTGCAAATTT+TGG | - | chr3.4:58402634-58402653 | MS.gene04476:intron | 30.0% |
| ! | GTTTTGTATATGGCTTAGTA+AGG | - | chr3.4:58401592-58401611 | MS.gene04476:CDS | 30.0% |
| ! | TAAGCAAATGTACTTTTGGT+TGG | - | chr3.4:58402086-58402105 | MS.gene04476:intron | 30.0% |
| ! | TAGTACAGTCTTCTTTCTTT+TGG | - | chr3.4:58400967-58400986 | MS.gene04476:intron | 30.0% |
| ! | TTAGTCTATGATCTTTTCAC+CGG | + | chr3.4:58404094-58404113 | None:intergenic | 30.0% |
| ! | TTTGCTCTTTTCACATTTAC+AGG | - | chr3.4:58400878-58400897 | MS.gene04476:intron | 30.0% |
| !! | ATGTTTTCAAGGTTTCAGTT+GGG | - | chr3.4:58404028-58404047 | MS.gene04476:CDS | 30.0% |
| !! | ATTTAATTTTTACCTGGTCC+AGG | - | chr3.4:58400131-58400150 | MS.gene04476:intron | 30.0% |
| !! | TAAAGGAAGCATTTATGTGA+AGG | + | chr3.4:58401646-58401665 | None:intergenic | 30.0% |
| !! | TTACTTATTTTCAGGCTCAT+GGG | - | chr3.4:58404002-58404021 | MS.gene04476:CDS | 30.0% |
| !! | TTTACTTATTTTCAGGCTCA+TGG | - | chr3.4:58404001-58404020 | MS.gene04476:CDS | 30.0% |
| !!! | CCAGTTTTCTGTGTTTTTTT+GGG | - | chr3.4:58401721-58401740 | MS.gene04476:intron | 30.0% |
| !!! | CTTTTAGTTTTTACAGTCCA+AGG | - | chr3.4:58402149-58402168 | MS.gene04476:intron | 30.0% |
| !!! | GTTTGCTTCTTGTTTTGTAT+TGG | - | chr3.4:58402912-58402931 | MS.gene04476:intron | 30.0% |
| AAAAGTTCAGCTAGTGAACA+AGG | - | chr3.4:58400559-58400578 | MS.gene04476:intron | 35.0% | |
| AACTTCTTCTGGATCTTACT+AGG | - | chr3.4:58401376-58401395 | MS.gene04476:intron | 35.0% | |
| AAGTTAGTTGCTAATGTACC+AGG | + | chr3.4:58400020-58400039 | None:intergenic | 35.0% | |
| AATTGTTCCTAGAGAACCAA+AGG | + | chr3.4:58401570-58401589 | None:intergenic | 35.0% | |
| ACCACTGCAATACTAATCTA+AGG | + | chr3.4:58400829-58400848 | None:intergenic | 35.0% | |
| ACCTTAGATTAGTATTGCAG+TGG | - | chr3.4:58400825-58400844 | MS.gene04476:CDS | 35.0% | |
| ACTTCTTCTGGATCTTACTA+GGG | - | chr3.4:58401377-58401396 | MS.gene04476:intron | 35.0% | |
| AGTACCATGAGTGTTTATTC+CGG | + | chr3.4:58400255-58400274 | None:intergenic | 35.0% | |
| AGTTGAGTTAAGAAGAAAGC+AGG | + | chr3.4:58402840-58402859 | None:intergenic | 35.0% | |
| ATAACATAAACAGCTTCTCC+TGG | + | chr3.4:58400152-58400171 | None:intergenic | 35.0% | |
| ATCGCAATTCATTGGAGTAT+TGG | + | chr3.4:58400775-58400794 | None:intergenic | 35.0% | |
| ATTCTACAAGACTCTGACTT+TGG | + | chr3.4:58403253-58403272 | None:intergenic | 35.0% | |
| CAAAAACAGTTTCTTGACCA+CGG | + | chr3.4:58400675-58400694 | None:intergenic | 35.0% | |
| CAATCTGCAACAAGTATCTA+CGG | + | chr3.4:58401088-58401107 | None:intergenic | 35.0% | |
| CACGAATAGAATCAGAAGAA+TGG | + | chr3.4:58402315-58402334 | None:intergenic | 35.0% | |
| CCCAAAAAAACACAGAAAAC+TGG | + | chr3.4:58401724-58401743 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+AGG | + | chr3.4:58399404-58399423 | None:intergenic | 35.0% | |
| GACAGAATATTATTCATGGC+CGG | + | chr3.4:58401413-58401432 | None:intergenic | 35.0% | |
| GAGACTATGTTGTCAAATAG+TGG | + | chr3.4:58403231-58403250 | None:intergenic | 35.0% | |
| GCAACTTTACCGTAATATGA+AGG | + | chr3.4:58400612-58400631 | None:intergenic | 35.0% | |
| GGCTTGAAGTTCAACATTAA+GGG | + | chr3.4:58401050-58401069 | None:intergenic | 35.0% | |
| GTTGAGTTAAGAAGAAAGCA+GGG | + | chr3.4:58402839-58402858 | None:intergenic | 35.0% | |
| TAATGTTGAACTTCAAGCCA+TGG | - | chr3.4:58401051-58401070 | MS.gene04476:intron | 35.0% | |
| TAGAAAAGGCAATCCAAGTT+TGG | + | chr3.4:58401207-58401226 | None:intergenic | 35.0% | |
| TATCCCCTGAGAAGATATAT+AGG | + | chr3.4:58403645-58403664 | None:intergenic | 35.0% | |
| TCCACTTACAGAATATCTAG+GGG | + | chr3.4:58403518-58403537 | None:intergenic | 35.0% | |
| TGCAGATAATGCAAACAGTT+GGG | - | chr3.4:58402805-58402824 | MS.gene04476:intron | 35.0% | |
| TGGCTTGAAGTTCAACATTA+AGG | + | chr3.4:58401051-58401070 | None:intergenic | 35.0% | |
| TGTTTACTAAGTATGCGGTT+TGG | - | chr3.4:58401984-58402003 | MS.gene04476:CDS | 35.0% | |
| TTCGACAAAATTAATCCCCA+AGG | + | chr3.4:58401851-58401870 | None:intergenic | 35.0% | |
| TTGCAGATAATGCAAACAGT+TGG | - | chr3.4:58402804-58402823 | MS.gene04476:intron | 35.0% | |
| ! | AAAACCTTAGTCTCCCTTTT+AGG | - | chr3.4:58402273-58402292 | MS.gene04476:CDS | 35.0% |
| ! | AAAAGGGAGACTAAGGTTTT+CGG | + | chr3.4:58402273-58402292 | None:intergenic | 35.0% |
| ! | AAAGTAGTAAGTGGTTTGGA+TGG | - | chr3.4:58399590-58399609 | MS.gene04476:intron | 35.0% |
| ! | ATGTTAAGTCTGAGAAGCAT+GGG | - | chr3.4:58399525-58399544 | MS.gene04476:intron | 35.0% |
| ! | CGGTTATTTCCAAAACATCA+AGG | + | chr3.4:58400655-58400674 | None:intergenic | 35.0% |
| ! | GACTATTTTGCGTTTTACCA+TGG | - | chr3.4:58402605-58402624 | MS.gene04476:intron | 35.0% |
| ! | GCAATCAACTTCTTTTCTTC+TGG | + | chr3.4:58401791-58401810 | None:intergenic | 35.0% |
| ! | GCAATTTCTGCAAATTTTGG+TGG | - | chr3.4:58402637-58402656 | MS.gene04476:intron | 35.0% |
| ! | GGAAGTTTTTCCTAAGAGAT+GGG | - | chr3.4:58399655-58399674 | MS.gene04476:intron | 35.0% |
| ! | GTAAGTGGATTTATTGTTCC+TGG | - | chr3.4:58403529-58403548 | MS.gene04476:intron | 35.0% |
| ! | GTACAGTCTTCTTTCTTTTG+GGG | - | chr3.4:58400969-58400988 | MS.gene04476:intron | 35.0% |
| ! | TTGGTTCTCTAGGAACAATT+TGG | - | chr3.4:58401570-58401589 | MS.gene04476:CDS | 35.0% |
| ! | TTTTAGCATTTGGCGTCATT+TGG | - | chr3.4:58401147-58401166 | MS.gene04476:intron | 35.0% |
| ! | TTTTCGGCAAAAGAACAAAG+AGG | + | chr3.4:58402257-58402276 | None:intergenic | 35.0% |
| !! | GATGTTTTCAAGGTTTCAGT+TGG | - | chr3.4:58404027-58404046 | MS.gene04476:CDS | 35.0% |
| !! | GCCAGTTTTCTGTGTTTTTT+TGG | - | chr3.4:58401720-58401739 | MS.gene04476:intron | 35.0% |
| !! | GGAAAGCAAGTTTTAGCATT+TGG | - | chr3.4:58401137-58401156 | MS.gene04476:intron | 35.0% |
| !! | TTGGTGATGATACGATATGA+TGG | - | chr3.4:58401333-58401352 | MS.gene04476:intron | 35.0% |
| !! | TTTCTGCAAATTTTGGTGGT+TGG | - | chr3.4:58402641-58402660 | MS.gene04476:intron | 35.0% |
| !!! | CACATATCAGTTTTAGAGTC+CGG | + | chr3.4:58399958-58399977 | None:intergenic | 35.0% |
| !!! | TGATGTTTTGGAAATAACCG+TGG | - | chr3.4:58400655-58400674 | MS.gene04476:intron | 35.0% |
| !!! | TTTTACTCCTTTGGTTCTCT+AGG | - | chr3.4:58401560-58401579 | MS.gene04476:CDS | 35.0% |
| AACCTGTGAAGGAAATACCT+TGG | - | chr3.4:58401831-58401850 | MS.gene04476:intron | 40.0% | |
| ACCTGTGAAGGAAATACCTT+GGG | - | chr3.4:58401832-58401851 | MS.gene04476:intron | 40.0% | |
| ACTAGTATCAGGGACAGTAT+CGG | + | chr3.4:58401294-58401313 | None:intergenic | 40.0% | |
| AGACTGTACTAAACCTACAG+TGG | + | chr3.4:58400958-58400977 | None:intergenic | 40.0% | |
| AGGATGAGACACACAAGAAA+TGG | + | chr3.4:58402988-58403007 | None:intergenic | 40.0% | |
| ATCTAGGGGCTATATCTTGA+TGG | + | chr3.4:58403504-58403523 | None:intergenic | 40.0% | |
| ATGCAAACAGTTGGGTTTCT+TGG | - | chr3.4:58402813-58402832 | MS.gene04476:intron | 40.0% | |
| CCAAAGGAGTAAAACACTGA+TGG | + | chr3.4:58401554-58401573 | None:intergenic | 40.0% | |
| GAAATTGCCATAGTAAGCCA+TGG | + | chr3.4:58402625-58402644 | None:intergenic | 40.0% | |
| GAAGAAGAAGAAGAAGGTGA+TGG | + | chr3.4:58399398-58399417 | None:intergenic | 40.0% | |
| GAGAAGTAGATCATTAGCTC+TGG | - | chr3.4:58401454-58401473 | MS.gene04476:intron | 40.0% | |
| GATGTTAAGTCTGAGAAGCA+TGG | - | chr3.4:58399524-58399543 | MS.gene04476:intron | 40.0% | |
| GGTTTCAGTTGGGCTATATT+TGG | - | chr3.4:58404038-58404057 | MS.gene04476:CDS | 40.0% | |
| GTGAATCAGGAAAGGTGAAA+AGG | + | chr3.4:58401519-58401538 | None:intergenic | 40.0% | |
| TAGCTAACACTTCTGATGGA+AGG | + | chr3.4:58399997-58400016 | None:intergenic | 40.0% | |
| TATTTCCTTCACAGGTTCCT+TGG | + | chr3.4:58401828-58401847 | None:intergenic | 40.0% | |
| TCAACCTAAAAGGGAGACTA+AGG | + | chr3.4:58402280-58402299 | None:intergenic | 40.0% | |
| TCAGTTGGGCTATATTTGGT+TGG | - | chr3.4:58404042-58404061 | MS.gene04476:CDS | 40.0% | |
| TCATACTTACTTGATGCCTC+TGG | + | chr3.4:58399551-58399570 | None:intergenic | 40.0% | |
| TCTACCGGAATAAACACTCA+TGG | - | chr3.4:58400248-58400267 | MS.gene04476:intron | 40.0% | |
| TCTCTCTCATCGCAATTCAT+TGG | + | chr3.4:58400783-58400802 | None:intergenic | 40.0% | |
| TGAAGTTACTGTACGCAACA+GGG | - | chr3.4:58403093-58403112 | MS.gene04476:intron | 40.0% | |
| TGAGGAACGAGAAAGTTCAA+TGG | + | chr3.4:58403419-58403438 | None:intergenic | 40.0% | |
| TGTACTAAACCTACAGTGGT+GGG | + | chr3.4:58400954-58400973 | None:intergenic | 40.0% | |
| TTAGGAAAAACTTCCCACCA+AGG | + | chr3.4:58399650-58399669 | None:intergenic | 40.0% | |
| TTCGTGAAGCTAACTTCTTC+TGG | - | chr3.4:58401365-58401384 | MS.gene04476:intron | 40.0% | |
| TTGAAGTTACTGTACGCAAC+AGG | - | chr3.4:58403092-58403111 | MS.gene04476:intron | 40.0% | |
| TTTGTCGAAACCACCAGTTT+GGG | - | chr3.4:58401862-58401881 | MS.gene04476:CDS | 40.0% | |
| ! | AGATACTTGTTGCAGATTGC+TGG | - | chr3.4:58401089-58401108 | MS.gene04476:intron | 40.0% |
| ! | CACTTGATGATCCTGAAATG+CGG | - | chr3.4:58401765-58401784 | MS.gene04476:intron | 40.0% |
| ! | CCATCAGTGTTTTACTCCTT+TGG | - | chr3.4:58401551-58401570 | MS.gene04476:CDS | 40.0% |
| ! | CGTTTTACCATGGCTTACTA+TGG | - | chr3.4:58402615-58402634 | MS.gene04476:intron | 40.0% |
| ! | CTCATGGGATGATGTTTTCA+AGG | - | chr3.4:58404017-58404036 | MS.gene04476:CDS | 40.0% |
| ! | GGGAAGTTTTTCCTAAGAGA+TGG | - | chr3.4:58399654-58399673 | MS.gene04476:intron | 40.0% |
| ! | GTTGCAGAATATGAAGCATC+TGG | + | chr3.4:58403300-58403319 | None:intergenic | 40.0% |
| ! | TCAGTGCTACTGAAAATTCC+AGG | + | chr3.4:58403550-58403569 | None:intergenic | 40.0% |
| ! | TGCTACAAACGGTTTTTCCA+AGG | - | chr3.4:58401808-58401827 | MS.gene04476:intron | 40.0% |
| ! | TTTGGATGGTGATGATGTTG+AGG | - | chr3.4:58399604-58399623 | MS.gene04476:intron | 40.0% |
| ! | TTTTGTCGAAACCACCAGTT+TGG | - | chr3.4:58401861-58401880 | MS.gene04476:CDS | 40.0% |
| ! | TTTTTCCAAGGAACCTGTGA+AGG | - | chr3.4:58401820-58401839 | MS.gene04476:intron | 40.0% |
| !! | AGAGAATGGATGGTGTCATA+TGG | + | chr3.4:58403982-58404001 | None:intergenic | 40.0% |
| !! | AGAGGCATCAAGTAAGTATG+AGG | - | chr3.4:58399550-58399569 | MS.gene04476:intron | 40.0% |
| !! | TCATTAGCTCTGGTATACAG+TGG | - | chr3.4:58401464-58401483 | MS.gene04476:intron | 40.0% |
| !! | TGAATGGTTGATGAGAGTTC+TGG | + | chr3.4:58399444-58399463 | None:intergenic | 40.0% |
| !!! | TGTGTTTTTTTGGGACCTGT+AGG | - | chr3.4:58401730-58401749 | MS.gene04476:intron | 40.0% |
| AACAAGCTCTTCTCCTTGGT+GGG | - | chr3.4:58399634-58399653 | MS.gene04476:intron | 45.0% | |
| AAGGAACAAGCTCTTCTCCT+TGG | - | chr3.4:58399630-58399649 | MS.gene04476:intron | 45.0% | |
| AATCCAAGTTTGGCAGCTAC+GGG | + | chr3.4:58401197-58401216 | None:intergenic | 45.0% | |
| AATGCATCAGTTCCCTGATC+AGG | + | chr3.4:58403457-58403476 | None:intergenic | 45.0% | |
| ACAGGTTACATTCTGCAGCA+TGG | - | chr3.4:58403722-58403741 | MS.gene04476:intron | 45.0% | |
| ACCAATTCCCATGAATGCAC+GGG | + | chr3.4:58401237-58401256 | None:intergenic | 45.0% | |
| ACTAGGCTTAAGGCCCTATT+TGG | + | chr3.4:58400419-58400438 | None:intergenic | 45.0% | |
| ACTGATGCATTCTCTCAGTC+TGG | - | chr3.4:58403466-58403485 | MS.gene04476:intron | 45.0% | |
| ATCTGTTACAAGGGTTCGCA+AGG | - | chr3.4:58402693-58402712 | MS.gene04476:intron | 45.0% | |
| ATGGAAACGGAGAAGGTGAA+TGG | + | chr3.4:58399460-58399479 | None:intergenic | 45.0% | |
| ATTAGTTGCCCGTGCATTCA+TGG | - | chr3.4:58401226-58401245 | MS.gene04476:intron | 45.0% | |
| CAATCCAAGTTTGGCAGCTA+CGG | + | chr3.4:58401198-58401217 | None:intergenic | 45.0% | |
| CAATGTCAGCAGAGTACAAC+TGG | - | chr3.4:58400925-58400944 | MS.gene04476:intron | 45.0% | |
| CACCAATTCCCATGAATGCA+CGG | + | chr3.4:58401238-58401257 | None:intergenic | 45.0% | |
| CAGGTAGCTAACACTTCTGA+TGG | + | chr3.4:58400001-58400020 | None:intergenic | 45.0% | |
| CAGTTGTACTCTGCTGACAT+TGG | + | chr3.4:58400927-58400946 | None:intergenic | 45.0% | |
| CCATACTGGTGAATCAGGAA+AGG | + | chr3.4:58401527-58401546 | None:intergenic | 45.0% | |
| CCCTTGTAACAGATACACCT+CGG | + | chr3.4:58402687-58402706 | None:intergenic | 45.0% | |
| CCGAGGTGTATCTGTTACAA+GGG | - | chr3.4:58402684-58402703 | MS.gene04476:intron | 45.0% | |
| CCTGTGAAGGAAATACCTTG+GGG | - | chr3.4:58401833-58401852 | MS.gene04476:intron | 45.0% | |
| CCTTGTAACAGATACACCTC+GGG | + | chr3.4:58402686-58402705 | None:intergenic | 45.0% | |
| CCTTTCCTGATTCACCAGTA+TGG | - | chr3.4:58401524-58401543 | MS.gene04476:CDS | 45.0% | |
| CGCATTTCAGGATCATCAAG+TGG | + | chr3.4:58401767-58401786 | None:intergenic | 45.0% | |
| CTAGTATCAGGGACAGTATC+GGG | + | chr3.4:58401293-58401312 | None:intergenic | 45.0% | |
| CTGTACTAAACCTACAGTGG+TGG | + | chr3.4:58400955-58400974 | None:intergenic | 45.0% | |
| GAATGAAAGTTCCCCAGTTG+TGG | + | chr3.4:58401910-58401929 | None:intergenic | 45.0% | |
| GCAAAAGTGGGACACTATCA+GGG | + | chr3.4:58401888-58401907 | None:intergenic | 45.0% | |
| GCACGGGCAACTAATAGAAA+AGG | + | chr3.4:58401221-58401240 | None:intergenic | 45.0% | |
| GCAGATTGCTGGTGGAATAT+GGG | - | chr3.4:58401100-58401119 | MS.gene04476:intron | 45.0% | |
| GCCCCTAGATATTCTGTAAG+TGG | - | chr3.4:58403514-58403533 | MS.gene04476:intron | 45.0% | |
| GCTATATTTGGTTGGAACCG+TGG | - | chr3.4:58404050-58404069 | MS.gene04476:CDS | 45.0% | |
| GTACTAAACCTACAGTGGTG+GGG | + | chr3.4:58400953-58400972 | None:intergenic | 45.0% | |
| GTATACAGTGGCATGTACCT+TGG | - | chr3.4:58401476-58401495 | MS.gene04476:intron | 45.0% | |
| TAGCATTTGGCGTCATTTGG+TGG | - | chr3.4:58401150-58401169 | MS.gene04476:intron | 45.0% | |
| TCCTGATTCACCAGTATGGA+TGG | - | chr3.4:58401528-58401547 | MS.gene04476:CDS | 45.0% | |
| TCTTCTCAGGGGATATTGCT+CGG | - | chr3.4:58403650-58403669 | MS.gene04476:intron | 45.0% | |
| TGAAACCACATACCTGAGTG+AGG | + | chr3.4:58401001-58401020 | None:intergenic | 45.0% | |
| TGCAGATTGCTGGTGGAATA+TGG | - | chr3.4:58401099-58401118 | MS.gene04476:intron | 45.0% | |
| TGCATTCATGGGAATTGGTG+AGG | - | chr3.4:58401238-58401257 | MS.gene04476:intron | 45.0% | |
| TTAGTTGCCCGTGCATTCAT+GGG | - | chr3.4:58401227-58401246 | MS.gene04476:intron | 45.0% | |
| ! | GAAGAAGAAGAAGGTGATGG+TGG | + | chr3.4:58399395-58399414 | None:intergenic | 45.0% |
| ! | GGTGATGATGTTGAGGTAGA+AGG | - | chr3.4:58399611-58399630 | MS.gene04476:intron | 45.0% |
| ! | GTTGTGTATGACTTGCAGTC+AGG | - | chr3.4:58402890-58402909 | MS.gene04476:intron | 45.0% |
| ! | TACTTGTTGCAGATTGCTGG+TGG | - | chr3.4:58401092-58401111 | MS.gene04476:intron | 45.0% |
| ! | TCTGTCAAAATGGGTTCCTG+TGG | - | chr3.4:58401427-58401446 | MS.gene04476:intron | 45.0% |
| ! | TCTTTTCACCGGTCGAGAAA+AGG | + | chr3.4:58404083-58404102 | None:intergenic | 45.0% |
| ! | TGAAAGATGCACTGCTGCTT+TGG | + | chr3.4:58403924-58403943 | None:intergenic | 45.0% |
| ! | TTTTCTTCTGGCCGCATTTC+AGG | + | chr3.4:58401779-58401798 | None:intergenic | 45.0% |
| !! | ACTAAGTATGCGGTTTGGTG+TGG | - | chr3.4:58401989-58402008 | MS.gene04476:CDS | 45.0% |
| !! | CATCAGAAGTGTTAGCTACC+TGG | - | chr3.4:58399999-58400018 | MS.gene04476:intron | 45.0% |
| !! | GGTTTGGTGTGGATGAAGTT+AGG | - | chr3.4:58402000-58402019 | MS.gene04476:CDS | 45.0% |
| !! | TTACTAGGGTGTTGCTATGC+CGG | - | chr3.4:58401391-58401410 | MS.gene04476:intron | 45.0% |
| !!! | AATCTATTTTTTTTTTTTTT+TGG | - | chr3.4:58399760-58399779 | MS.gene04476:CDS | 5.0% |
| !!! | ATTTTTTTTTTTTTTTTTGA+CGG | + | chr3.4:58402224-58402243 | None:intergenic | 5.0% |
| AACCACATACCTGAGTGAGG+AGG | + | chr3.4:58400998-58401017 | None:intergenic | 50.0% | |
| AACCTGTTGCTGCTGTTCCA+AGG | + | chr3.4:58403709-58403728 | None:intergenic | 50.0% | |
| ACACTGATGGCCATCCATAC+TGG | + | chr3.4:58401541-58401560 | None:intergenic | 50.0% | |
| AGCTACGGGAGTTAGGATTG+TGG | + | chr3.4:58401183-58401202 | None:intergenic | 50.0% | |
| AGCTAGCACTCCAGCAGTAT+TGG | + | chr3.4:58403681-58403700 | None:intergenic | 50.0% | |
| AGGTGCAATGGAAACGGAGA+AGG | + | chr3.4:58399467-58399486 | None:intergenic | 50.0% | |
| ATACACAACACAGCCACCAC+AGG | + | chr3.4:58402879-58402898 | None:intergenic | 50.0% | |
| ATGTACCTTGGATCGGTCAC+TGG | - | chr3.4:58401488-58401507 | MS.gene04476:intron | 50.0% | |
| ATTTGGTTGGAACCGTGGTG+TGG | - | chr3.4:58404055-58404074 | MS.gene04476:CDS | 50.0% | |
| CACAGCAGGTGCAATGGAAA+CGG | + | chr3.4:58399473-58399492 | None:intergenic | 50.0% | |
| CAGTGGCATGTACCTTGGAT+CGG | - | chr3.4:58401481-58401500 | MS.gene04476:intron | 50.0% | |
| CCACCACAGGAGAATCAATG+TGG | + | chr3.4:58402866-58402885 | None:intergenic | 50.0% | |
| CCCGAGGTGTATCTGTTACA+AGG | - | chr3.4:58402683-58402702 | MS.gene04476:intron | 50.0% | |
| CGAGAAAAGGTTCCACACCA+CGG | + | chr3.4:58404070-58404089 | None:intergenic | 50.0% | |
| CTCGGTCTATCCAATACTGC+TGG | - | chr3.4:58403668-58403687 | MS.gene04476:intron | 50.0% | |
| GAACAAGCTCTTCTCCTTGG+TGG | - | chr3.4:58399633-58399652 | MS.gene04476:intron | 50.0% | |
| GATCTACTTCTCTCTGCCAC+AGG | + | chr3.4:58401446-58401465 | None:intergenic | 50.0% | |
| GCCATCCATACTGGTGAATC+AGG | + | chr3.4:58401532-58401551 | None:intergenic | 50.0% | |
| GCGATGAGAGAGAGAACAGA+TGG | - | chr3.4:58400790-58400809 | MS.gene04476:CDS | 50.0% | |
| GGCAAAAGTGGGACACTATC+AGG | + | chr3.4:58401889-58401908 | None:intergenic | 50.0% | |
| GGGAGTTAGGATTGTGGCAA+CGG | + | chr3.4:58401177-58401196 | None:intergenic | 50.0% | |
| TAAACAGCTTCTCCTGGACC+AGG | + | chr3.4:58400146-58400165 | None:intergenic | 50.0% | |
| TACATGTCTCAGCGTCATGC+CGG | - | chr3.4:58399936-58399955 | MS.gene04476:intron | 50.0% | |
| TACCTCCTCACTCAGGTATG+TGG | - | chr3.4:58400993-58401012 | MS.gene04476:intron | 50.0% | |
| TCCCCAGTTGTGGCAAAAGT+GGG | + | chr3.4:58401900-58401919 | None:intergenic | 50.0% | |
| TTCCCCAGTTGTGGCAAAAG+TGG | + | chr3.4:58401901-58401920 | None:intergenic | 50.0% | |
| ! | AATACTGCTGGAGTGCTAGC+TGG | - | chr3.4:58403680-58403699 | MS.gene04476:intron | 50.0% |
| ! | AGAGTTCTGGTACGTGACAG+TGG | + | chr3.4:58399431-58399450 | None:intergenic | 50.0% |
| ! | CCCCAAGGTATTTCCTTCAC+AGG | + | chr3.4:58401836-58401855 | None:intergenic | 50.0% |
| ! | CTTCTGATGGAAGGTGTGTC+TGG | + | chr3.4:58399988-58400007 | None:intergenic | 50.0% |
| ! | GGAATATGGGCTGACACAGT+GGG | - | chr3.4:58401113-58401132 | MS.gene04476:intron | 50.0% |
| ! | GTGTGGAACCTTTTCTCGAC+CGG | - | chr3.4:58404072-58404091 | MS.gene04476:CDS | 50.0% |
| ! | TGGAATATGGGCTGACACAG+TGG | - | chr3.4:58401112-58401131 | MS.gene04476:intron | 50.0% |
| !! | CCACATTGATTCTCCTGTGG+TGG | - | chr3.4:58402863-58402882 | MS.gene04476:intron | 50.0% |
| !! | GAGCCACATTGATTCTCCTG+TGG | - | chr3.4:58402860-58402879 | MS.gene04476:intron | 50.0% |
| !! | GTCCCACTTTTGCCACAACT+GGG | - | chr3.4:58401895-58401914 | MS.gene04476:CDS | 50.0% |
| !! | TCCCACTTTTGCCACAACTG+GGG | - | chr3.4:58401896-58401915 | MS.gene04476:CDS | 50.0% |
| !! | TGTCCCACTTTTGCCACAAC+TGG | - | chr3.4:58401894-58401913 | MS.gene04476:CDS | 50.0% |
| AACTGGAACCCCACCACTGT+AGG | - | chr3.4:58400942-58400961 | MS.gene04476:intron | 55.0% | |
| ACACCTTCCCTCTTCCTCTC+CGG | + | chr3.4:58399499-58399518 | None:intergenic | 55.0% | |
| ACTATCAGGGCCCAAACTGG+TGG | + | chr3.4:58401875-58401894 | None:intergenic | 55.0% | |
| ACTCCCGTAGCTGCCAAACT+TGG | - | chr3.4:58401191-58401210 | MS.gene04476:intron | 55.0% | |
| CATTGCACCTGCTGTGTCAC+CGG | - | chr3.4:58399477-58399496 | MS.gene04476:intron | 55.0% | |
| CCAATCCAGTGACCGATCCA+AGG | + | chr3.4:58401496-58401515 | None:intergenic | 55.0% | |
| CCTTGGATCGGTCACTGGAT+TGG | - | chr3.4:58401493-58401512 | MS.gene04476:intron | 55.0% | |
| CTACGGATGCATCAGAGCCA+TGG | + | chr3.4:58401071-58401090 | None:intergenic | 55.0% | |
| GACACTATCAGGGCCCAAAC+TGG | + | chr3.4:58401878-58401897 | None:intergenic | 55.0% | |
| GCAGACACTCTTGTAACCCG+AGG | - | chr3.4:58402667-58402686 | MS.gene04476:intron | 55.0% | |
| GCCCGTGCATTCATGGGAAT+TGG | - | chr3.4:58401233-58401252 | MS.gene04476:intron | 55.0% | |
| GTCCTTGGAACAGCAGCAAC+AGG | - | chr3.4:58403704-58403723 | MS.gene04476:intron | 55.0% | |
| GTGGCGAACTATGTGCCTAC+AGG | + | chr3.4:58401748-58401767 | None:intergenic | 55.0% | |
| GTTTGGCAGCTACGGGAGTT+AGG | + | chr3.4:58401190-58401209 | None:intergenic | 55.0% | |
| TGTGTCACCGGAGAGGAAGA+GGG | - | chr3.4:58399489-58399508 | MS.gene04476:intron | 55.0% | |
| TTGGGGATACCTCCTCACTC+AGG | - | chr3.4:58400986-58401005 | MS.gene04476:intron | 55.0% | |
| ! | ATATGGGCTGACACAGTGGG+AGG | - | chr3.4:58401116-58401135 | MS.gene04476:intron | 55.0% |
| ! | GAGAGGAAGAGGGAAGGTGT+GGG | - | chr3.4:58399499-58399518 | MS.gene04476:intron | 55.0% |
| CGGTGACACAGCAGGTGCAA+TGG | + | chr3.4:58399479-58399498 | None:intergenic | 60.0% | |
| CTGTGTCACCGGAGAGGAAG+AGG | - | chr3.4:58399488-58399507 | MS.gene04476:intron | 60.0% | |
| GGAGAGGAAGAGGGAAGGTG+TGG | - | chr3.4:58399498-58399517 | MS.gene04476:intron | 60.0% | |
| TCACCGGAGAGGAAGAGGGA+AGG | - | chr3.4:58399493-58399512 | MS.gene04476:intron | 60.0% | |
| TTCCTCTCCGGTGACACAGC+AGG | + | chr3.4:58399487-58399506 | None:intergenic | 60.0% | |
| ! | GGAGTGCTAGCTGGTGTCCT+TGG | - | chr3.4:58403689-58403708 | MS.gene04476:intron | 60.0% |
| ! | GTCTGAGAAGCATGGGCCAG+AGG | - | chr3.4:58399532-58399551 | MS.gene04476:intron | 60.0% |
| CACCTGCTGTGTCACCGGAG+AGG | - | chr3.4:58399482-58399501 | MS.gene04476:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 58399359 | 58404113 | 58399359 | ID=MS.gene04476 |
| chr3.4 | mRNA | 58399359 | 58404113 | 58399359 | ID=MS.gene04476.t1;Parent=MS.gene04476 |
| chr3.4 | exon | 58403745 | 58404113 | 58403745 | ID=MS.gene04476.t1.exon1;Parent=MS.gene04476.t1 |
| chr3.4 | CDS | 58403745 | 58404113 | 58403745 | ID=cds.MS.gene04476.t1;Parent=MS.gene04476.t1 |
| chr3.4 | exon | 58402465 | 58402572 | 58402465 | ID=MS.gene04476.t1.exon2;Parent=MS.gene04476.t1 |
| chr3.4 | CDS | 58402465 | 58402572 | 58402465 | ID=cds.MS.gene04476.t1;Parent=MS.gene04476.t1 |
| chr3.4 | exon | 58402213 | 58402368 | 58402213 | ID=MS.gene04476.t1.exon3;Parent=MS.gene04476.t1 |
| chr3.4 | CDS | 58402213 | 58402368 | 58402213 | ID=cds.MS.gene04476.t1;Parent=MS.gene04476.t1 |
| chr3.4 | exon | 58401859 | 58402074 | 58401859 | ID=MS.gene04476.t1.exon4;Parent=MS.gene04476.t1 |
| chr3.4 | CDS | 58401859 | 58402074 | 58401859 | ID=cds.MS.gene04476.t1;Parent=MS.gene04476.t1 |
| chr3.4 | exon | 58401511 | 58401720 | 58401511 | ID=MS.gene04476.t1.exon5;Parent=MS.gene04476.t1 |
| chr3.4 | CDS | 58401511 | 58401720 | 58401511 | ID=cds.MS.gene04476.t1;Parent=MS.gene04476.t1 |
| chr3.4 | exon | 58400758 | 58400895 | 58400758 | ID=MS.gene04476.t1.exon6;Parent=MS.gene04476.t1 |
| chr3.4 | CDS | 58400758 | 58400895 | 58400758 | ID=cds.MS.gene04476.t1;Parent=MS.gene04476.t1 |
| chr3.4 | exon | 58400561 | 58400662 | 58400561 | ID=MS.gene04476.t1.exon7;Parent=MS.gene04476.t1 |
| chr3.4 | CDS | 58400561 | 58400662 | 58400561 | ID=cds.MS.gene04476.t1;Parent=MS.gene04476.t1 |
| chr3.4 | exon | 58399944 | 58400009 | 58399944 | ID=MS.gene04476.t1.exon8;Parent=MS.gene04476.t1 |
| chr3.4 | CDS | 58399944 | 58400009 | 58399944 | ID=cds.MS.gene04476.t1;Parent=MS.gene04476.t1 |
| chr3.4 | exon | 58399729 | 58399813 | 58399729 | ID=MS.gene04476.t1.exon9;Parent=MS.gene04476.t1 |
| chr3.4 | CDS | 58399729 | 58399813 | 58399729 | ID=cds.MS.gene04476.t1;Parent=MS.gene04476.t1 |
| chr3.4 | exon | 58399359 | 58399456 | 58399359 | ID=MS.gene04476.t1.exon10;Parent=MS.gene04476.t1 |
| chr3.4 | CDS | 58399359 | 58399456 | 58399359 | ID=cds.MS.gene04476.t1;Parent=MS.gene04476.t1 |
| Gene Sequence |
| Protein sequence |
