Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045102.t1 | XP_003601978.1 | 93.6 | 578 | 35 | 2 | 1 | 577 | 1 | 577 | 2.40E-300 | 1040.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045102.t1 | Q9MAH1 | 43.6 | 399 | 217 | 3 | 182 | 576 | 191 | 585 | 5.1e-86 | 320.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045102.t1 | G7J3U4 | 93.6 | 578 | 35 | 2 | 1 | 577 | 1 | 577 | 1.7e-300 | 1040.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045102 | MS.gene015906 | PPI |
| MS.gene86308 | MS.gene045102 | PPI |
| MS.gene54083 | MS.gene045102 | PPI |
| MS.gene021587 | MS.gene045102 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045102.t1 | MTR_3g087480 | 96.367 | 578 | 19 | 2 | 1 | 577 | 1 | 577 | 0.0 | 1146 |
| MS.gene045102.t1 | MTR_3g074230 | 58.333 | 360 | 143 | 2 | 220 | 576 | 189 | 544 | 1.98e-143 | 428 |
| MS.gene045102.t1 | MTR_3g074230 | 58.333 | 360 | 143 | 2 | 220 | 576 | 189 | 544 | 8.38e-143 | 428 |
| MS.gene045102.t1 | MTR_5g063200 | 52.970 | 404 | 176 | 3 | 173 | 576 | 175 | 564 | 9.06e-142 | 426 |
| MS.gene045102.t1 | MTR_2g078020 | 48.267 | 375 | 187 | 1 | 209 | 576 | 208 | 582 | 2.78e-123 | 377 |
| MS.gene045102.t1 | MTR_2g078020 | 48.267 | 375 | 187 | 1 | 209 | 576 | 208 | 582 | 1.38e-122 | 377 |
| MS.gene045102.t1 | MTR_6g013475 | 79.231 | 130 | 23 | 2 | 88 | 216 | 3 | 129 | 4.68e-62 | 201 |
| MS.gene045102.t1 | MTR_4g076240 | 25.753 | 365 | 210 | 12 | 223 | 531 | 527 | 886 | 2.04e-21 | 99.4 |
| MS.gene045102.t1 | MTR_2g090135 | 34.921 | 126 | 73 | 2 | 459 | 575 | 101 | 226 | 1.36e-15 | 77.8 |
| MS.gene045102.t1 | MTR_7g090940 | 25.459 | 381 | 225 | 12 | 224 | 551 | 658 | 1032 | 2.27e-15 | 80.5 |
| MS.gene045102.t1 | MTR_7g059150 | 34.959 | 123 | 70 | 2 | 443 | 555 | 79 | 201 | 2.46e-14 | 73.9 |
| MS.gene045102.t1 | MTR_1g030300 | 31.034 | 145 | 98 | 1 | 204 | 348 | 165 | 307 | 2.16e-13 | 73.2 |
| MS.gene045102.t1 | MTR_3g452710 | 33.945 | 109 | 70 | 1 | 223 | 329 | 12 | 120 | 1.11e-12 | 71.2 |
| MS.gene045102.t1 | MTR_3g452710 | 33.945 | 109 | 70 | 1 | 223 | 329 | 12 | 120 | 1.62e-12 | 70.5 |
| MS.gene045102.t1 | MTR_2g090135 | 37.255 | 102 | 56 | 2 | 459 | 552 | 101 | 202 | 1.71e-12 | 67.0 |
| MS.gene045102.t1 | MTR_1g041435 | 28.571 | 105 | 75 | 0 | 460 | 564 | 15 | 119 | 4.04e-12 | 68.2 |
| MS.gene045102.t1 | MTR_1g084100 | 33.929 | 112 | 73 | 1 | 463 | 574 | 98 | 208 | 1.08e-11 | 67.8 |
| MS.gene045102.t1 | MTR_5g012030 | 32.673 | 101 | 68 | 0 | 460 | 560 | 396 | 496 | 1.26e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045102.t1 | AT5G65160 | 54.925 | 599 | 222 | 10 | 7 | 576 | 11 | 590 | 0.0 | 631 |
| MS.gene045102.t1 | AT5G10090 | 60.211 | 475 | 179 | 3 | 105 | 576 | 124 | 591 | 0.0 | 583 |
| MS.gene045102.t1 | AT1G78120 | 54.247 | 365 | 166 | 1 | 214 | 577 | 151 | 515 | 1.35e-127 | 385 |
| MS.gene045102.t1 | AT2G42580 | 49.859 | 355 | 174 | 1 | 221 | 571 | 219 | 573 | 3.41e-112 | 350 |
| MS.gene045102.t1 | AT1G78120 | 53.846 | 325 | 149 | 1 | 214 | 537 | 151 | 475 | 1.61e-108 | 334 |
| MS.gene045102.t1 | AT1G53300 | 46.537 | 361 | 187 | 3 | 221 | 576 | 226 | 585 | 1.53e-105 | 333 |
| MS.gene045102.t1 | AT3G58620 | 45.856 | 362 | 192 | 2 | 214 | 571 | 203 | 564 | 1.40e-103 | 327 |
| MS.gene045102.t1 | AT3G14950 | 44.722 | 360 | 195 | 1 | 221 | 576 | 257 | 616 | 1.66e-103 | 328 |
| MS.gene045102.t1 | AT3G58620 | 45.856 | 362 | 192 | 2 | 214 | 571 | 203 | 564 | 1.80e-103 | 327 |
| MS.gene045102.t1 | AT2G41520 | 25.587 | 426 | 241 | 17 | 217 | 575 | 545 | 961 | 6.25e-22 | 101 |
| MS.gene045102.t1 | AT2G41520 | 25.587 | 426 | 241 | 17 | 217 | 575 | 445 | 861 | 7.78e-22 | 100 |
| MS.gene045102.t1 | AT5G12430 | 26.371 | 383 | 229 | 12 | 223 | 556 | 609 | 987 | 1.57e-21 | 100 |
| MS.gene045102.t1 | AT2G41520 | 25.436 | 401 | 242 | 15 | 217 | 575 | 545 | 930 | 2.40e-16 | 83.6 |
| MS.gene045102.t1 | AT4G12400 | 24.860 | 358 | 237 | 11 | 223 | 568 | 3 | 340 | 2.99e-14 | 75.9 |
| MS.gene045102.t1 | AT4G12400 | 24.860 | 358 | 237 | 11 | 223 | 568 | 3 | 340 | 3.09e-14 | 76.3 |
| MS.gene045102.t1 | AT4G12400 | 31.683 | 101 | 69 | 0 | 460 | 560 | 373 | 473 | 9.79e-11 | 65.1 |
| MS.gene045102.t1 | AT1G04190 | 30.769 | 130 | 89 | 1 | 446 | 575 | 5 | 133 | 4.53e-13 | 70.9 |
| MS.gene045102.t1 | AT3G04240 | 25.143 | 350 | 215 | 10 | 234 | 556 | 167 | 496 | 6.89e-13 | 72.4 |
| MS.gene045102.t1 | AT4G30480 | 32.540 | 126 | 76 | 2 | 459 | 575 | 108 | 233 | 1.84e-12 | 68.6 |
| MS.gene045102.t1 | AT4G08320 | 34.694 | 98 | 64 | 0 | 213 | 310 | 166 | 263 | 5.17e-12 | 68.6 |
| MS.gene045102.t1 | AT4G08320 | 34.694 | 98 | 64 | 0 | 213 | 310 | 166 | 263 | 6.54e-12 | 68.2 |
| MS.gene045102.t1 | AT4G30480 | 36.559 | 93 | 52 | 1 | 459 | 544 | 108 | 200 | 4.14e-11 | 63.2 |
| MS.gene045102.t1 | AT1G56440 | 33.898 | 118 | 77 | 1 | 457 | 574 | 85 | 201 | 4.97e-11 | 65.9 |
| MS.gene045102.t1 | AT1G56440 | 33.898 | 118 | 77 | 1 | 457 | 574 | 75 | 191 | 4.98e-11 | 65.5 |
Find 111 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATGTTGTATGGAAATTT+AGG | 0.096719 | 3.4:+81165534 | MS.gene045102:CDS |
| ACCAATTGGTCCAAAGAATT+TGG | 0.157579 | 3.4:-81166731 | None:intergenic |
| AAAGAAGCTGTTGGTATTTC+AGG | 0.164915 | 3.4:+81165435 | MS.gene045102:CDS |
| GACGATTGTACCAAATTCTT+TGG | 0.195700 | 3.4:+81166721 | MS.gene045102:CDS |
| TTGTTTGCCATCTTGTTGTT+AGG | 0.206579 | 3.4:-81166946 | None:intergenic |
| CTATTTAATTCCTCATCTTC+TGG | 0.221444 | 3.4:-81167395 | None:intergenic |
| CTGCTTGTTTATAATGATAA+AGG | 0.245665 | 3.4:-81166172 | None:intergenic |
| GGATTAATGACAACAGTATT+TGG | 0.247419 | 3.4:+81165141 | MS.gene045102:CDS |
| ATGGAAATTTAGGGAATATT+AGG | 0.268159 | 3.4:+81165544 | MS.gene045102:CDS |
| GAACCACCACGTCGTCGTTT+TGG | 0.274837 | 3.4:-81165225 | None:intergenic |
| GAAATACCAACAGCTTCTTT+TGG | 0.293308 | 3.4:-81165432 | None:intergenic |
| CAGATTTGATGATGCTTTAG+AGG | 0.308396 | 3.4:+81166897 | MS.gene045102:intron |
| TCCAGAGCAGTTGAAAATAA+TGG | 0.313493 | 3.4:+81165767 | MS.gene045102:CDS |
| TTATGTTGTATGGAAATTTA+GGG | 0.317802 | 3.4:+81165535 | MS.gene045102:CDS |
| GATTAGGAAATTTGCACTTT+AGG | 0.321043 | 3.4:+81165988 | MS.gene045102:CDS |
| CTTCAACTGCTTTCTCCAAT+TGG | 0.321511 | 3.4:-81167137 | None:intergenic |
| TTTGGATCATTAACGTTGTT+TGG | 0.329256 | 3.4:-81165207 | None:intergenic |
| CCAGAGCAGTTGAAAATAAT+GGG | 0.331941 | 3.4:+81165768 | MS.gene045102:CDS |
| AGCTCTTCTCAACCTTGCTT+TGG | 0.339234 | 3.4:-81167196 | None:intergenic |
| ACCAAATTCTTTGGACCAAT+TGG | 0.343365 | 3.4:+81166730 | MS.gene045102:CDS |
| AATAAGAGTACTACTTCCTT+TGG | 0.349666 | 3.4:-81165493 | None:intergenic |
| ATCATTAACGTTGTTTGGTA+TGG | 0.365292 | 3.4:-81165202 | None:intergenic |
| AACAAATTTGAATTACCAAT+TGG | 0.367828 | 3.4:-81166745 | None:intergenic |
| TCCGAGGCTTGCGTTGCATA+TGG | 0.372273 | 3.4:+81167042 | MS.gene045102:CDS |
| GATGAATTTGAAACCTTTGA+TGG | 0.375854 | 3.4:-81165372 | None:intergenic |
| TGTTTGCCATCTTGTTGTTA+GGG | 0.377926 | 3.4:-81166945 | None:intergenic |
| CAAAGTAAAATAGAGTTATA+TGG | 0.380890 | 3.4:-81167084 | None:intergenic |
| TGCACCGGATGATAGAGTTT+TGG | 0.382756 | 3.4:-81166309 | None:intergenic |
| ACTCTTATTCGCGCTTCGTC+TGG | 0.385363 | 3.4:+81165507 | MS.gene045102:CDS |
| GGAATTAAATAGAGCATTGT+TGG | 0.387923 | 3.4:+81167406 | MS.gene045102:CDS |
| TTCACTTTAGCAACCTCATC+AGG | 0.390431 | 3.4:-81166209 | None:intergenic |
| TGCTTGTTTATAATGATAAA+GGG | 0.398764 | 3.4:-81166171 | None:intergenic |
| AACCTTGCTTTGGTGTAAGA+TGG | 0.401622 | 3.4:-81167186 | None:intergenic |
| TCTGGCAATGTTATGTTGTA+TGG | 0.402824 | 3.4:+81165525 | MS.gene045102:CDS |
| CATAGAGCTCATCATCGATT+AGG | 0.403953 | 3.4:+81165972 | MS.gene045102:CDS |
| CACGTGGTGGTTCACTTTGT+AGG | 0.410155 | 3.4:+81165724 | MS.gene045102:CDS |
| TAGATCAAAACTCGGCCAAT+TGG | 0.421549 | 3.4:+81167122 | MS.gene045102:CDS |
| ATGGATTATAGATGGAAAGA+TGG | 0.427946 | 3.4:+81167330 | MS.gene045102:intron |
| TAGAGCATTGTTGGAGGCTC+GGG | 0.429040 | 3.4:+81167415 | MS.gene045102:CDS |
| TTCTACCTTCAACTTGTTGG+TGG | 0.437992 | 3.4:-81165697 | None:intergenic |
| TGCACTGAGGCTCGCAGGTT+AGG | 0.440976 | 3.4:+81166257 | MS.gene045102:CDS |
| TTCAAATTCATCAACTACTC+AGG | 0.449757 | 3.4:+81165383 | MS.gene045102:CDS |
| CTGCTTTAACTGCTCTTGGT+AGG | 0.450208 | 3.4:+81165895 | MS.gene045102:CDS |
| ATTTCGCCAGAGAGAAAATC+AGG | 0.454949 | 3.4:+81165114 | MS.gene045102:CDS |
| AGTGCTGCTTTAACTGCTCT+TGG | 0.456396 | 3.4:+81165891 | MS.gene045102:CDS |
| GTGACAGCTGCAAGAGGAAG+AGG | 0.456849 | 3.4:+81166991 | MS.gene045102:CDS |
| TTGAAGCTGTGTTTGAATGT+AGG | 0.462334 | 3.4:+81165922 | MS.gene045102:CDS |
| TGGATTATAGATGGAAAGAT+GGG | 0.467551 | 3.4:+81167331 | MS.gene045102:intron |
| TCATTAACGTTGTTTGGTAT+GGG | 0.474787 | 3.4:-81165201 | None:intergenic |
| ATCATCCACCAACAAGTTGA+AGG | 0.475755 | 3.4:+81165692 | MS.gene045102:CDS |
| AGGCTCGCAGGTTAGGAGAT+TGG | 0.476698 | 3.4:+81166264 | MS.gene045102:CDS |
| GAAAGATGGGAAGCTTCAAT+AGG | 0.478223 | 3.4:+81167344 | MS.gene045102:CDS |
| ATAGAGCATTGTTGGAGGCT+CGG | 0.486677 | 3.4:+81167414 | MS.gene045102:CDS |
| ACGTGGTGGTTCACTTTGTA+GGG | 0.489232 | 3.4:+81165725 | MS.gene045102:CDS |
| ACCTTGCTTTGGTGTAAGAT+GGG | 0.490732 | 3.4:-81167185 | None:intergenic |
| AATGCAAATTCAAATGCAAA+AGG | 0.491684 | 3.4:+81165627 | MS.gene045102:CDS |
| TAGGGCTATATCAACTAGAA+TGG | 0.493499 | 3.4:+81165743 | MS.gene045102:CDS |
| TGAAGCTGTGTTTGAATGTA+GGG | 0.506829 | 3.4:+81165923 | MS.gene045102:CDS |
| GTTGAAAATAATGGGGAATG+AGG | 0.512910 | 3.4:+81165776 | MS.gene045102:CDS |
| GGCAAACAAGGTGTTGAGAA+AGG | 0.512946 | 3.4:+81166960 | MS.gene045102:CDS |
| CGGTGCAGATTCTGCTCCAC+AGG | 0.516911 | 3.4:+81166325 | MS.gene045102:CDS |
| ACCTCCAAAACTCTATCATC+CGG | 0.524405 | 3.4:+81166305 | MS.gene045102:CDS |
| ATTTGATGAACAAGAAGACT+TGG | 0.528008 | 3.4:-81165316 | None:intergenic |
| CTTTATCATTATAAACAAGC+AGG | 0.531498 | 3.4:+81166173 | MS.gene045102:CDS |
| TCCATATGCAACGCAAGCCT+CGG | 0.535262 | 3.4:-81167043 | None:intergenic |
| TGCAATAGCTGCATCATACA+AGG | 0.535391 | 3.4:-81165832 | None:intergenic |
| TCAAATTCATCAACTACTCA+GGG | 0.541512 | 3.4:+81165384 | MS.gene045102:CDS |
| GTAAGTGCACTGAGGCTCGC+AGG | 0.542799 | 3.4:+81166252 | MS.gene045102:CDS |
| GCTCAAGTTGATATAGCTGC+TGG | 0.549363 | 3.4:+81166778 | MS.gene045102:CDS |
| AAGAGAGACACCAGAAGATG+AGG | 0.555582 | 3.4:+81167385 | MS.gene045102:CDS |
| AACGCCACGTGGACCATCAA+AGG | 0.559475 | 3.4:+81165359 | MS.gene045102:CDS |
| ATTAAATAGAGCATTGTTGG+AGG | 0.561915 | 3.4:+81167409 | MS.gene045102:CDS |
| ACTCAGGGGTATGTTAATCA+AGG | 0.567874 | 3.4:+81165399 | MS.gene045102:CDS |
| GCTTGCGTTGCATATGGAGA+AGG | 0.573416 | 3.4:+81167048 | MS.gene045102:CDS |
| CAGATTAGGAGAAACAGATA+AGG | 0.574073 | 3.4:+81166148 | MS.gene045102:intron |
| TGATGAGCTCTATGATAATG+AGG | 0.577068 | 3.4:-81165963 | None:intergenic |
| CTTGCGTTGCATATGGAGAA+GGG | 0.577562 | 3.4:+81167049 | MS.gene045102:CDS |
| CCAGAGAGAAAATCAGGCTG+TGG | 0.577805 | 3.4:+81165120 | MS.gene045102:CDS |
| TAATAGTTATTCAAATGCAA+TGG | 0.579556 | 3.4:+81165581 | MS.gene045102:CDS |
| ACGACGTGGTGGTTCAAAAG+AGG | 0.580831 | 3.4:+81165233 | MS.gene045102:CDS |
| AAGTTGATATAGCTGCTGGC+AGG | 0.584890 | 3.4:+81166782 | MS.gene045102:CDS |
| TAATGACAACAGTATTTGGA+AGG | 0.585909 | 3.4:+81165145 | MS.gene045102:CDS |
| TAACAACAAGATGGCAAACA+AGG | 0.586586 | 3.4:+81166948 | MS.gene045102:CDS |
| AAGAGCTGATTGTAATGCCA+AGG | 0.591062 | 3.4:+81167212 | MS.gene045102:CDS |
| CGAGCTGTGACAGCTGCAAG+AGG | 0.594817 | 3.4:+81166985 | MS.gene045102:CDS |
| ACTAGACCCTAACAACAAGA+TGG | 0.595527 | 3.4:+81166939 | MS.gene045102:CDS |
| GCAAATTCAAATGCAAAAGG+AGG | 0.597517 | 3.4:+81165630 | MS.gene045102:CDS |
| CAATCGTCAACATCAAAATG+AGG | 0.603192 | 3.4:-81166706 | None:intergenic |
| TGTCTGCATCTTGATGCCTA+CGG | 0.609966 | 3.4:-81166666 | None:intergenic |
| AGAGTTCCAAAAGAAGCTGT+TGG | 0.612914 | 3.4:+81165426 | MS.gene045102:CDS |
| CTGTGGAGCAGAATCTGCAC+CGG | 0.622358 | 3.4:-81166324 | None:intergenic |
| TTATAAACAAGCAGGATCAG+AGG | 0.623703 | 3.4:+81166181 | MS.gene045102:CDS |
| GCCCATCTTACACCAAAGCA+AGG | 0.628552 | 3.4:+81167184 | MS.gene045102:CDS |
| AATTTAGGGAATATTAGGCA+AGG | 0.632462 | 3.4:+81165549 | MS.gene045102:CDS |
| GATCCAAAACGACGACGTGG+TGG | 0.632918 | 3.4:+81165222 | MS.gene045102:CDS |
| AGGGGTATGTTAATCAAGGT+AGG | 0.636580 | 3.4:+81165403 | MS.gene045102:CDS |
| AAGCGCTGATAAAACTCCGT+AGG | 0.646518 | 3.4:+81166650 | MS.gene045102:CDS |
| CAGAAAACGACAACGCCACG+TGG | 0.652747 | 3.4:+81165348 | MS.gene045102:CDS |
| ATCAGAGGCTGATCCTGATG+AGG | 0.654133 | 3.4:+81166196 | MS.gene045102:CDS |
| TGACAACAGTATTTGGAAGG+CGG | 0.657393 | 3.4:+81165148 | MS.gene045102:CDS |
| CAGAGCAGTTGAAAATAATG+GGG | 0.660016 | 3.4:+81165769 | MS.gene045102:CDS |
| GCAGCTTGTAGATCAAAACT+CGG | 0.660130 | 3.4:+81167114 | MS.gene045102:CDS |
| GAAACCTTTGATGGTCCACG+TGG | 0.673817 | 3.4:-81165363 | None:intergenic |
| CAAGGCATCGAAATTCTCCG+AGG | 0.675699 | 3.4:+81167026 | MS.gene045102:CDS |
| CAACTTAAGAAACAACGAGG+TGG | 0.710109 | 3.4:+81167440 | MS.gene045102:CDS |
| CAAATTCATCAACTACTCAG+GGG | 0.711670 | 3.4:+81165385 | MS.gene045102:CDS |
| AGCAGTTGAAGATTGTACTG+CGG | 0.725831 | 3.4:+81167149 | MS.gene045102:CDS |
| AATGATCCAAAACGACGACG+TGG | 0.732125 | 3.4:+81165219 | MS.gene045102:CDS |
| TCATTTAAGTAAGTGCACTG+AGG | 0.735333 | 3.4:+81166244 | MS.gene045102:CDS |
| TATGGGAGCAGAACCCACAG+AGG | 0.785471 | 3.4:-81165184 | None:intergenic |
| GCGCAACTTAAGAAACAACG+AGG | 0.792961 | 3.4:+81167437 | MS.gene045102:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGAATATTTTAAATTGTT+GGG | + | chr3.4:81167263-81167282 | MS.gene045102:intron | 10.0% |
| !!! | TAATGAATATTTTAAATTGT+TGG | + | chr3.4:81167262-81167281 | MS.gene045102:intron | 10.0% |
| !! | AACAAATTTGAATTACCAAT+TGG | - | chr3.4:81166748-81166767 | None:intergenic | 20.0% |
| !! | AACACAATATTAAATGATTG+TGG | - | chr3.4:81166875-81166894 | None:intergenic | 20.0% |
| !! | AACTTGTATATTAATTACCT+TGG | - | chr3.4:81167232-81167251 | None:intergenic | 20.0% |
| !! | CAAAGTAAAATAGAGTTATA+TGG | - | chr3.4:81167087-81167106 | None:intergenic | 20.0% |
| !! | TAATAGTTATTCAAATGCAA+TGG | + | chr3.4:81165581-81165600 | MS.gene045102:CDS | 20.0% |
| !! | TGCTTGTTTATAATGATAAA+GGG | - | chr3.4:81166174-81166193 | None:intergenic | 20.0% |
| !! | TTATGTTGTATGGAAATTTA+GGG | + | chr3.4:81165535-81165554 | MS.gene045102:CDS | 20.0% |
| !! | TTGAAGATATGATGATATAT+AGG | - | chr3.4:81166372-81166391 | None:intergenic | 20.0% |
| !!! | AATTTGCATTTTCAAAATAC+TGG | - | chr3.4:81165617-81165636 | None:intergenic | 20.0% |
| !!! | TAGTTTATGATTTTGAATTG+TGG | + | chr3.4:81166401-81166420 | MS.gene045102:intron | 20.0% |
| ! | AATGATCATCAAAAATCCAA+AGG | + | chr3.4:81165477-81165496 | MS.gene045102:CDS | 25.0% |
| ! | AATGCAAATTCAAATGCAAA+AGG | + | chr3.4:81165627-81165646 | MS.gene045102:CDS | 25.0% |
| ! | AATGTTTATGCATTGTGAAA+TGG | + | chr3.4:81167311-81167330 | MS.gene045102:intron | 25.0% |
| ! | ATGGAAATTTAGGGAATATT+AGG | + | chr3.4:81165544-81165563 | MS.gene045102:CDS | 25.0% |
| ! | CTGCTTGTTTATAATGATAA+AGG | - | chr3.4:81166175-81166194 | None:intergenic | 25.0% |
| ! | CTTGATATTGTAGTAAATTG+TGG | + | chr3.4:81166455-81166474 | MS.gene045102:intron | 25.0% |
| ! | CTTTATCATTATAAACAAGC+AGG | + | chr3.4:81166173-81166192 | MS.gene045102:CDS | 25.0% |
| ! | GTTATGTTGTATGGAAATTT+AGG | + | chr3.4:81165534-81165553 | MS.gene045102:CDS | 25.0% |
| ! | TTATAAAAATGGAAGATTCG+CGG | + | chr3.4:81165800-81165819 | MS.gene045102:CDS | 25.0% |
| !! | ATTATTGCTGATTACAGATT+AGG | + | chr3.4:81166134-81166153 | MS.gene045102:intron | 25.0% |
| !!! | AGGGTAATAGTTTTAATTTG+CGG | - | chr3.4:81166528-81166547 | None:intergenic | 25.0% |
| !!! | ATTGTGAAATGGATTATAGA+TGG | + | chr3.4:81167322-81167341 | MS.gene045102:intron | 25.0% |
| AATTTAGGGAATATTAGGCA+AGG | + | chr3.4:81165549-81165568 | MS.gene045102:CDS | 30.0% | |
| ATCATTAACGTTGTTTGGTA+TGG | - | chr3.4:81165205-81165224 | None:intergenic | 30.0% | |
| ATTTGATGAACAAGAAGACT+TGG | - | chr3.4:81165319-81165338 | None:intergenic | 30.0% | |
| CTATTTAATTCCTCATCTTC+TGG | - | chr3.4:81167398-81167417 | None:intergenic | 30.0% | |
| GATTAGGAAATTTGCACTTT+AGG | + | chr3.4:81165988-81166007 | MS.gene045102:CDS | 30.0% | |
| GGATTAATGACAACAGTATT+TGG | + | chr3.4:81165141-81165160 | MS.gene045102:CDS | 30.0% | |
| GGGAATGAGGATTATAAAAA+TGG | + | chr3.4:81165789-81165808 | MS.gene045102:CDS | 30.0% | |
| TAATGACAACAGTATTTGGA+AGG | + | chr3.4:81165145-81165164 | MS.gene045102:CDS | 30.0% | |
| TCAAATTCATCAACTACTCA+GGG | + | chr3.4:81165384-81165403 | MS.gene045102:CDS | 30.0% | |
| TCATTAACGTTGTTTGGTAT+GGG | - | chr3.4:81165204-81165223 | None:intergenic | 30.0% | |
| TGGATTATAGATGGAAAGAT+GGG | + | chr3.4:81167331-81167350 | MS.gene045102:intron | 30.0% | |
| TTCAAATTCATCAACTACTC+AGG | + | chr3.4:81165383-81165402 | MS.gene045102:CDS | 30.0% | |
| TTTGGATCATTAACGTTGTT+TGG | - | chr3.4:81165210-81165229 | None:intergenic | 30.0% | |
| ! | ACTCTATTTTACTTTGCAAC+CGG | + | chr3.4:81167091-81167110 | MS.gene045102:CDS | 30.0% |
| ! | ATGGATTATAGATGGAAAGA+TGG | + | chr3.4:81167330-81167349 | MS.gene045102:intron | 30.0% |
| ! | GATGAATTTGAAACCTTTGA+TGG | - | chr3.4:81165375-81165394 | None:intergenic | 30.0% |
| ! | TTTTTCTACCTTCAACTTGT+TGG | - | chr3.4:81165703-81165722 | None:intergenic | 30.0% |
| !! | AATAAGAGTACTACTTCCTT+TGG | - | chr3.4:81165496-81165515 | None:intergenic | 30.0% |
| !! | ATTAAATAGAGCATTGTTGG+AGG | + | chr3.4:81167409-81167428 | MS.gene045102:CDS | 30.0% |
| !! | CTTCTATAAGAAGCTGTTTT+AGG | - | chr3.4:81165864-81165883 | None:intergenic | 30.0% |
| !! | GGAATTAAATAGAGCATTGT+TGG | + | chr3.4:81167406-81167425 | MS.gene045102:CDS | 30.0% |
| !! | GTGTTTGAAACATTTTGTGA+AGG | - | chr3.4:81165276-81165295 | None:intergenic | 30.0% |
| AAAGAAGCTGTTGGTATTTC+AGG | + | chr3.4:81165435-81165454 | MS.gene045102:CDS | 35.0% | |
| ACCAAATTCTTTGGACCAAT+TGG | + | chr3.4:81166730-81166749 | MS.gene045102:CDS | 35.0% | |
| ACCAATTGGTCCAAAGAATT+TGG | - | chr3.4:81166734-81166753 | None:intergenic | 35.0% | |
| ACGTGATAGAGAGATACATT+AGG | - | chr3.4:81166548-81166567 | None:intergenic | 35.0% | |
| AGCAAAATGTTACGTGTATC+TGG | - | chr3.4:81166069-81166088 | None:intergenic | 35.0% | |
| AGGAAATTTGCACTTTAGGT+AGG | + | chr3.4:81165992-81166011 | MS.gene045102:intron | 35.0% | |
| ATTGTGATTGCGATATATCG+TGG | + | chr3.4:81166483-81166502 | MS.gene045102:intron | 35.0% | |
| CAAATTCATCAACTACTCAG+GGG | + | chr3.4:81165385-81165404 | MS.gene045102:CDS | 35.0% | |
| CAATCGTCAACATCAAAATG+AGG | - | chr3.4:81166709-81166728 | None:intergenic | 35.0% | |
| CAGAGCAGTTGAAAATAATG+GGG | + | chr3.4:81165769-81165788 | MS.gene045102:CDS | 35.0% | |
| CAGATTAGGAGAAACAGATA+AGG | + | chr3.4:81166148-81166167 | MS.gene045102:intron | 35.0% | |
| CCAGAGCAGTTGAAAATAAT+GGG | + | chr3.4:81165768-81165787 | MS.gene045102:CDS | 35.0% | |
| CGTGATAGAGAGATACATTA+GGG | - | chr3.4:81166547-81166566 | None:intergenic | 35.0% | |
| GACGATTGTACCAAATTCTT+TGG | + | chr3.4:81166721-81166740 | MS.gene045102:CDS | 35.0% | |
| GCAAATTCAAATGCAAAAGG+AGG | + | chr3.4:81165630-81165649 | MS.gene045102:CDS | 35.0% | |
| GCTTATATTTAAGAGCAGAG+CGG | + | chr3.4:81166086-81166105 | MS.gene045102:intron | 35.0% | |
| GGTACTCATCAGTTATTAAC+TGG | + | chr3.4:81166346-81166365 | MS.gene045102:intron | 35.0% | |
| TAACAACAAGATGGCAAACA+AGG | + | chr3.4:81166948-81166967 | MS.gene045102:CDS | 35.0% | |
| TAATAACTGATGAGTACCTG+TGG | - | chr3.4:81166344-81166363 | None:intergenic | 35.0% | |
| TAGGGCTATATCAACTAGAA+TGG | + | chr3.4:81165743-81165762 | MS.gene045102:CDS | 35.0% | |
| TCATTTAAGTAAGTGCACTG+AGG | + | chr3.4:81166244-81166263 | MS.gene045102:CDS | 35.0% | |
| TCCAGAGCAGTTGAAAATAA+TGG | + | chr3.4:81165767-81165786 | MS.gene045102:CDS | 35.0% | |
| TCGAAAAAAACATCCTCTGT+GGG | + | chr3.4:81165171-81165190 | MS.gene045102:CDS | 35.0% | |
| TCTGGCAATGTTATGTTGTA+TGG | + | chr3.4:81165525-81165544 | MS.gene045102:CDS | 35.0% | |
| TGAAGCTGTGTTTGAATGTA+GGG | + | chr3.4:81165923-81165942 | MS.gene045102:CDS | 35.0% | |
| TTATAAACAAGCAGGATCAG+AGG | + | chr3.4:81166181-81166200 | MS.gene045102:CDS | 35.0% | |
| TTGAAGCTGTGTTTGAATGT+AGG | + | chr3.4:81165922-81165941 | MS.gene045102:CDS | 35.0% | |
| TTGAAGGTAGAAAAATCACG+TGG | + | chr3.4:81165708-81165727 | MS.gene045102:CDS | 35.0% | |
| ! | CTCTATTTTACTTTGCAACC+GGG | + | chr3.4:81167092-81167111 | MS.gene045102:CDS | 35.0% |
| ! | GAAATACCAACAGCTTCTTT+TGG | - | chr3.4:81165435-81165454 | None:intergenic | 35.0% |
| ! | GTTGAAAATAATGGGGAATG+AGG | + | chr3.4:81165776-81165795 | MS.gene045102:CDS | 35.0% |
| ! | TGATGAGCTCTATGATAATG+AGG | - | chr3.4:81165966-81165985 | None:intergenic | 35.0% |
| !! | CAGATTTGATGATGCTTTAG+AGG | + | chr3.4:81166897-81166916 | MS.gene045102:intron | 35.0% |
| !! | TGTTTGCCATCTTGTTGTTA+GGG | - | chr3.4:81166948-81166967 | None:intergenic | 35.0% |
| !! | TTGTTTGCCATCTTGTTGTT+AGG | - | chr3.4:81166949-81166968 | None:intergenic | 35.0% |
| AAGAGCTGATTGTAATGCCA+AGG | + | chr3.4:81167212-81167231 | MS.gene045102:CDS | 40.0% | |
| AAGGTAGAAAAATCACGTGG+TGG | + | chr3.4:81165711-81165730 | MS.gene045102:CDS | 40.0% | |
| ACCTCCAAAACTCTATCATC+CGG | + | chr3.4:81166305-81166324 | MS.gene045102:CDS | 40.0% | |
| ACTAGACCCTAACAACAAGA+TGG | + | chr3.4:81166939-81166958 | MS.gene045102:CDS | 40.0% | |
| AGAGTTCCAAAAGAAGCTGT+TGG | + | chr3.4:81165426-81165445 | MS.gene045102:CDS | 40.0% | |
| AGCAGTTGAAGATTGTACTG+CGG | + | chr3.4:81167149-81167168 | MS.gene045102:CDS | 40.0% | |
| ATTTCGCCAGAGAGAAAATC+AGG | + | chr3.4:81165114-81165133 | MS.gene045102:CDS | 40.0% | |
| CAACTTAAGAAACAACGAGG+TGG | + | chr3.4:81167440-81167459 | MS.gene045102:CDS | 40.0% | |
| CTTCAACTGCTTTCTCCAAT+TGG | - | chr3.4:81167140-81167159 | None:intergenic | 40.0% | |
| GAAAGATGGGAAGCTTCAAT+AGG | + | chr3.4:81167344-81167363 | MS.gene045102:CDS | 40.0% | |
| GCAGCTTGTAGATCAAAACT+CGG | + | chr3.4:81167114-81167133 | MS.gene045102:CDS | 40.0% | |
| GTCGAAAAAAACATCCTCTG+TGG | + | chr3.4:81165170-81165189 | MS.gene045102:CDS | 40.0% | |
| TAAAAATGGAAGATTCGCGG+AGG | + | chr3.4:81165803-81165822 | MS.gene045102:CDS | 40.0% | |
| TAGATCAAAACTCGGCCAAT+TGG | + | chr3.4:81167122-81167141 | MS.gene045102:CDS | 40.0% | |
| TGACAACAGTATTTGGAAGG+CGG | + | chr3.4:81165148-81165167 | MS.gene045102:CDS | 40.0% | |
| TGCAATAGCTGCATCATACA+AGG | - | chr3.4:81165835-81165854 | None:intergenic | 40.0% | |
| TTCACTTTAGCAACCTCATC+AGG | - | chr3.4:81166212-81166231 | None:intergenic | 40.0% | |
| ! | AACCTTGCTTTGGTGTAAGA+TGG | - | chr3.4:81167189-81167208 | None:intergenic | 40.0% |
| ! | AAGAGGAAACGAGCTTTTCA+AGG | + | chr3.4:81167008-81167027 | MS.gene045102:CDS | 40.0% |
| ! | ACCTTGCTTTGGTGTAAGAT+GGG | - | chr3.4:81167188-81167207 | None:intergenic | 40.0% |
| ! | ACTCAGGGGTATGTTAATCA+AGG | + | chr3.4:81165399-81165418 | MS.gene045102:CDS | 40.0% |
| ! | AGGGGTATGTTAATCAAGGT+AGG | + | chr3.4:81165403-81165422 | MS.gene045102:CDS | 40.0% |
| ! | ATCATCCACCAACAAGTTGA+AGG | + | chr3.4:81165692-81165711 | MS.gene045102:CDS | 40.0% |
| ! | CATAGAGCTCATCATCGATT+AGG | + | chr3.4:81165972-81165991 | MS.gene045102:CDS | 40.0% |
| ! | CCCATTATTTTCAACTGCTC+TGG | - | chr3.4:81165771-81165790 | None:intergenic | 40.0% |
| ! | TGTGCTGATATATGTGACAC+TGG | + | chr3.4:81166597-81166616 | MS.gene045102:intron | 40.0% |
| !! | TTCTACCTTCAACTTGTTGG+TGG | - | chr3.4:81165700-81165719 | None:intergenic | 40.0% |
| !!! | TGATAGAGTTTTGGAGGTCT+CGG | - | chr3.4:81166303-81166322 | None:intergenic | 40.0% |
| AAGAGAGACACCAGAAGATG+AGG | + | chr3.4:81167385-81167404 | MS.gene045102:CDS | 45.0% | |
| AATGATCCAAAACGACGACG+TGG | + | chr3.4:81165219-81165238 | MS.gene045102:CDS | 45.0% | |
| ACGTGGTGGTTCACTTTGTA+GGG | + | chr3.4:81165725-81165744 | MS.gene045102:CDS | 45.0% | |
| AGCTCTTCTCAACCTTGCTT+TGG | - | chr3.4:81167199-81167218 | None:intergenic | 45.0% | |
| CTGCTTTAACTGCTCTTGGT+AGG | + | chr3.4:81165895-81165914 | MS.gene045102:CDS | 45.0% | |
| CTTGCGTTGCATATGGAGAA+GGG | + | chr3.4:81167049-81167068 | MS.gene045102:CDS | 45.0% | |
| GCGCAACTTAAGAAACAACG+AGG | + | chr3.4:81167437-81167456 | MS.gene045102:CDS | 45.0% | |
| GTGGCCACAAAAACAATTGC+AGG | + | chr3.4:81166502-81166521 | MS.gene045102:intron | 45.0% | |
| TGTCTGCATCTTGATGCCTA+CGG | - | chr3.4:81166669-81166688 | None:intergenic | 45.0% | |
| ! | TGCACCGGATGATAGAGTTT+TGG | - | chr3.4:81166312-81166331 | None:intergenic | 45.0% |
| !! | AAGCGCTGATAAAACTCCGT+AGG | + | chr3.4:81166650-81166669 | MS.gene045102:CDS | 45.0% |
| !! | AAGTTGATATAGCTGCTGGC+AGG | + | chr3.4:81166782-81166801 | MS.gene045102:CDS | 45.0% |
| !! | ACCGGATGATAGAGTTTTGG+AGG | - | chr3.4:81166309-81166328 | None:intergenic | 45.0% |
| !! | ACGGAGTTTTATCAGCGCTT+CGG | - | chr3.4:81166650-81166669 | None:intergenic | 45.0% |
| !! | AGTGCTGCTTTAACTGCTCT+TGG | + | chr3.4:81165891-81165910 | MS.gene045102:CDS | 45.0% |
| !! | ATAGAGCATTGTTGGAGGCT+CGG | + | chr3.4:81167414-81167433 | MS.gene045102:CDS | 45.0% |
| !! | GCTCAAGTTGATATAGCTGC+TGG | + | chr3.4:81166778-81166797 | MS.gene045102:CDS | 45.0% |
| !! | GGCAAACAAGGTGTTGAGAA+AGG | + | chr3.4:81166960-81166979 | MS.gene045102:CDS | 45.0% |
| !! | GTTTTGATCTACAAGCTGCC+CGG | - | chr3.4:81167113-81167132 | None:intergenic | 45.0% |
| ACGACGTGGTGGTTCAAAAG+AGG | + | chr3.4:81165233-81165252 | MS.gene045102:CDS | 50.0% | |
| ACTCTTATTCGCGCTTCGTC+TGG | + | chr3.4:81165507-81165526 | MS.gene045102:CDS | 50.0% | |
| ATCAGAGGCTGATCCTGATG+AGG | + | chr3.4:81166196-81166215 | MS.gene045102:CDS | 50.0% | |
| CACGTGGTGGTTCACTTTGT+AGG | + | chr3.4:81165724-81165743 | MS.gene045102:CDS | 50.0% | |
| CCAGAGAGAAAATCAGGCTG+TGG | + | chr3.4:81165120-81165139 | MS.gene045102:CDS | 50.0% | |
| GCCCATCTTACACCAAAGCA+AGG | + | chr3.4:81167184-81167203 | MS.gene045102:CDS | 50.0% | |
| GCTTGCGTTGCATATGGAGA+AGG | + | chr3.4:81167048-81167067 | MS.gene045102:CDS | 50.0% | |
| TCCATATGCAACGCAAGCCT+CGG | - | chr3.4:81167046-81167065 | None:intergenic | 50.0% | |
| ! | CCACAGCCTGATTTTCTCTC+TGG | - | chr3.4:81165123-81165142 | None:intergenic | 50.0% |
| ! | GAAACCTTTGATGGTCCACG+TGG | - | chr3.4:81165366-81165385 | None:intergenic | 50.0% |
| !! | CAAGGCATCGAAATTCTCCG+AGG | + | chr3.4:81167026-81167045 | MS.gene045102:CDS | 50.0% |
| !! | TAGAGCATTGTTGGAGGCTC+GGG | + | chr3.4:81167415-81167434 | MS.gene045102:CDS | 50.0% |
| !!! | GCGGCCTGCAATTGTTTTTG+TGG | - | chr3.4:81166509-81166528 | None:intergenic | 50.0% |
| AACGCCACGTGGACCATCAA+AGG | + | chr3.4:81165359-81165378 | MS.gene045102:CDS | 55.0% | |
| AGGCTCGCAGGTTAGGAGAT+TGG | + | chr3.4:81166264-81166283 | MS.gene045102:CDS | 55.0% | |
| CAGAAAACGACAACGCCACG+TGG | + | chr3.4:81165348-81165367 | MS.gene045102:CDS | 55.0% | |
| CTGTGGAGCAGAATCTGCAC+CGG | - | chr3.4:81166327-81166346 | None:intergenic | 55.0% | |
| GATCCAAAACGACGACGTGG+TGG | + | chr3.4:81165222-81165241 | MS.gene045102:CDS | 55.0% | |
| GTGACAGCTGCAAGAGGAAG+AGG | + | chr3.4:81166991-81167010 | MS.gene045102:CDS | 55.0% | |
| TATGGGAGCAGAACCCACAG+AGG | - | chr3.4:81165187-81165206 | None:intergenic | 55.0% | |
| TCCGAGGCTTGCGTTGCATA+TGG | + | chr3.4:81167042-81167061 | MS.gene045102:CDS | 55.0% | |
| ! | GAACCACCACGTCGTCGTTT+TGG | - | chr3.4:81165228-81165247 | None:intergenic | 55.0% |
| !!! | CGTGGCGTTGTCGTTTTCTG+TGG | - | chr3.4:81165348-81165367 | None:intergenic | 55.0% |
| CGAGCTGTGACAGCTGCAAG+AGG | + | chr3.4:81166985-81167004 | MS.gene045102:CDS | 60.0% | |
| CGGTGCAGATTCTGCTCCAC+AGG | + | chr3.4:81166325-81166344 | MS.gene045102:CDS | 60.0% | |
| GTAAGTGCACTGAGGCTCGC+AGG | + | chr3.4:81166252-81166271 | MS.gene045102:CDS | 60.0% | |
| TGCACTGAGGCTCGCAGGTT+AGG | + | chr3.4:81166257-81166276 | MS.gene045102:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 81165105 | 81167466 | 81165105 | ID=MS.gene045102 |
| chr3.4 | mRNA | 81165105 | 81167466 | 81165105 | ID=MS.gene045102.t1;Parent=MS.gene045102 |
| chr3.4 | exon | 81165105 | 81166009 | 81165105 | ID=MS.gene045102.t1.exon1;Parent=MS.gene045102.t1 |
| chr3.4 | CDS | 81165105 | 81166009 | 81165105 | ID=cds.MS.gene045102.t1;Parent=MS.gene045102.t1 |
| chr3.4 | exon | 81166151 | 81166346 | 81166151 | ID=MS.gene045102.t1.exon2;Parent=MS.gene045102.t1 |
| chr3.4 | CDS | 81166151 | 81166346 | 81166151 | ID=cds.MS.gene045102.t1;Parent=MS.gene045102.t1 |
| chr3.4 | exon | 81166631 | 81166803 | 81166631 | ID=MS.gene045102.t1.exon3;Parent=MS.gene045102.t1 |
| chr3.4 | CDS | 81166631 | 81166803 | 81166631 | ID=cds.MS.gene045102.t1;Parent=MS.gene045102.t1 |
| chr3.4 | exon | 81166900 | 81167233 | 81166900 | ID=MS.gene045102.t1.exon4;Parent=MS.gene045102.t1 |
| chr3.4 | CDS | 81166900 | 81167233 | 81166900 | ID=cds.MS.gene045102.t1;Parent=MS.gene045102.t1 |
| chr3.4 | exon | 81167341 | 81167466 | 81167341 | ID=MS.gene045102.t1.exon5;Parent=MS.gene045102.t1 |
| chr3.4 | CDS | 81167341 | 81167466 | 81167341 | ID=cds.MS.gene045102.t1;Parent=MS.gene045102.t1 |
| Gene Sequence |
| Protein sequence |
