Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045530.t1 | XP_003607540.2 | 98.1 | 640 | 3 | 3 | 1 | 632 | 1 | 639 | 0.00E+00 | 1182.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045530.t1 | O25225 | 45.7 | 587 | 295 | 7 | 57 | 632 | 4 | 577 | 8.0e-141 | 502.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045530.t1 | G7JUZ7 | 98.1 | 640 | 3 | 3 | 1 | 632 | 1 | 639 | 0.0e+00 | 1182.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene061606 | MS.gene045530 | PPI |
MS.gene040952 | MS.gene045530 | PPI |
MS.gene89744 | MS.gene045530 | PPI |
MS.gene018869 | MS.gene045530 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045530.t1 | MTR_4g079360 | 98.125 | 640 | 3 | 3 | 1 | 632 | 1 | 639 | 0.0 | 1271 |
MS.gene045530.t1 | MTR_1g052535 | 41.667 | 588 | 318 | 8 | 57 | 632 | 82 | 656 | 3.63e-143 | 431 |
MS.gene045530.t1 | MTR_1g052535 | 43.627 | 408 | 214 | 5 | 57 | 459 | 82 | 478 | 2.65e-104 | 325 |
MS.gene045530.t1 | MTR_3g097250 | 28.820 | 517 | 286 | 20 | 57 | 534 | 83 | 556 | 2.60e-35 | 142 |
MS.gene045530.t1 | MTR_7g009740 | 31.128 | 257 | 135 | 4 | 54 | 292 | 64 | 296 | 5.74e-28 | 119 |
MS.gene045530.t1 | MTR_4g119340 | 41.045 | 134 | 73 | 1 | 53 | 180 | 10 | 143 | 6.41e-24 | 107 |
MS.gene045530.t1 | MTR_7g044770 | 35.870 | 184 | 107 | 3 | 8 | 180 | 11 | 194 | 9.46e-24 | 106 |
MS.gene045530.t1 | MTR_7g094460 | 29.180 | 305 | 181 | 10 | 4 | 295 | 17 | 299 | 3.24e-21 | 97.4 |
MS.gene045530.t1 | MTR_2g069050 | 40.816 | 147 | 65 | 4 | 55 | 180 | 17 | 162 | 1.34e-20 | 97.1 |
MS.gene045530.t1 | MTR_1g048000 | 40.816 | 147 | 65 | 4 | 55 | 180 | 17 | 162 | 1.34e-20 | 97.1 |
MS.gene045530.t1 | MTR_2g069310 | 40.816 | 147 | 65 | 4 | 55 | 180 | 17 | 162 | 1.38e-20 | 97.1 |
MS.gene045530.t1 | MTR_2g021300 | 29.323 | 266 | 169 | 8 | 36 | 292 | 28 | 283 | 4.59e-20 | 93.6 |
MS.gene045530.t1 | MTR_2g069320 | 38.776 | 147 | 68 | 3 | 55 | 180 | 17 | 162 | 5.98e-20 | 95.1 |
MS.gene045530.t1 | MTR_4g101750 | 40.310 | 129 | 71 | 2 | 58 | 180 | 93 | 221 | 7.50e-19 | 91.3 |
MS.gene045530.t1 | MTR_4g101750 | 40.310 | 129 | 71 | 2 | 58 | 180 | 93 | 221 | 8.61e-19 | 91.3 |
MS.gene045530.t1 | MTR_2g020660 | 35.185 | 162 | 92 | 3 | 33 | 181 | 27 | 188 | 2.15e-18 | 89.7 |
MS.gene045530.t1 | MTR_3g076660 | 28.906 | 256 | 162 | 7 | 59 | 300 | 94 | 343 | 1.68e-17 | 86.3 |
MS.gene045530.t1 | MTR_4g116430 | 35.714 | 140 | 78 | 2 | 53 | 180 | 135 | 274 | 3.32e-17 | 86.3 |
MS.gene045530.t1 | MTR_8g087950 | 26.165 | 279 | 165 | 8 | 48 | 292 | 266 | 537 | 6.55e-13 | 72.4 |
MS.gene045530.t1 | MTR_8g087950 | 26.165 | 279 | 165 | 8 | 48 | 292 | 339 | 610 | 8.07e-13 | 72.0 |
MS.gene045530.t1 | MTR_1g085410 | 26.515 | 264 | 152 | 8 | 59 | 289 | 9 | 263 | 3.57e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045530.t1 | AT2G31060 | 80.685 | 642 | 113 | 3 | 1 | 632 | 1 | 641 | 0.0 | 1040 |
MS.gene045530.t1 | AT2G31060 | 80.186 | 646 | 113 | 4 | 1 | 632 | 1 | 645 | 0.0 | 1033 |
MS.gene045530.t1 | AT2G31060 | 82.036 | 501 | 83 | 1 | 139 | 632 | 1 | 501 | 0.0 | 855 |
MS.gene045530.t1 | AT5G13650 | 42.560 | 625 | 325 | 11 | 27 | 632 | 47 | 656 | 1.92e-149 | 448 |
MS.gene045530.t1 | AT5G13650 | 42.652 | 626 | 324 | 12 | 27 | 632 | 47 | 657 | 2.77e-148 | 445 |
MS.gene045530.t1 | AT5G08650 | 29.074 | 540 | 297 | 22 | 36 | 534 | 65 | 559 | 3.57e-39 | 153 |
MS.gene045530.t1 | AT5G08650 | 29.367 | 521 | 282 | 22 | 55 | 534 | 84 | 559 | 9.57e-39 | 152 |
MS.gene045530.t1 | AT5G39900 | 31.148 | 305 | 166 | 9 | 8 | 292 | 9 | 289 | 9.81e-30 | 125 |
MS.gene045530.t1 | AT2G45030 | 36.702 | 188 | 108 | 3 | 4 | 180 | 10 | 197 | 2.90e-26 | 114 |
MS.gene045530.t1 | AT3G22980 | 43.511 | 131 | 68 | 1 | 56 | 180 | 8 | 138 | 2.86e-25 | 112 |
MS.gene045530.t1 | AT3G22980 | 43.511 | 131 | 68 | 1 | 56 | 180 | 8 | 138 | 2.86e-25 | 112 |
MS.gene045530.t1 | AT3G22980 | 43.511 | 131 | 68 | 1 | 56 | 180 | 8 | 138 | 2.86e-25 | 112 |
MS.gene045530.t1 | AT1G45332 | 37.097 | 186 | 105 | 4 | 6 | 180 | 13 | 197 | 3.53e-25 | 111 |
MS.gene045530.t1 | AT1G56070 | 40.816 | 147 | 65 | 4 | 55 | 180 | 17 | 162 | 2.04e-20 | 96.7 |
MS.gene045530.t1 | AT1G56070 | 40.816 | 147 | 65 | 4 | 55 | 180 | 17 | 162 | 2.04e-20 | 96.7 |
MS.gene045530.t1 | AT1G56070 | 40.816 | 147 | 65 | 4 | 55 | 180 | 17 | 162 | 2.04e-20 | 96.7 |
MS.gene045530.t1 | AT3G12915 | 40.136 | 147 | 66 | 4 | 55 | 180 | 17 | 162 | 5.10e-20 | 95.1 |
MS.gene045530.t1 | AT4G20360 | 30.620 | 258 | 155 | 9 | 59 | 300 | 81 | 330 | 6.77e-20 | 93.6 |
MS.gene045530.t1 | AT4G20360 | 30.620 | 258 | 155 | 9 | 59 | 300 | 81 | 330 | 6.77e-20 | 93.6 |
MS.gene045530.t1 | AT1G62750 | 41.085 | 129 | 70 | 2 | 58 | 180 | 97 | 225 | 6.86e-19 | 91.7 |
MS.gene045530.t1 | AT4G02930 | 27.368 | 285 | 183 | 7 | 59 | 335 | 69 | 337 | 2.87e-17 | 85.5 |
MS.gene045530.t1 | AT1G06220 | 34.286 | 140 | 80 | 2 | 53 | 180 | 134 | 273 | 4.16e-17 | 86.3 |
MS.gene045530.t1 | AT1G06220 | 34.286 | 140 | 80 | 2 | 53 | 180 | 134 | 273 | 4.16e-17 | 86.3 |
MS.gene045530.t1 | AT1G06220 | 34.286 | 140 | 80 | 2 | 53 | 180 | 134 | 273 | 4.16e-17 | 86.3 |
MS.gene045530.t1 | AT5G25230 | 32.857 | 140 | 82 | 2 | 53 | 180 | 120 | 259 | 7.86e-16 | 82.0 |
MS.gene045530.t1 | AT5G25230 | 32.857 | 140 | 82 | 2 | 53 | 180 | 120 | 259 | 7.86e-16 | 82.0 |
MS.gene045530.t1 | AT5G10630 | 25.540 | 278 | 164 | 9 | 59 | 301 | 317 | 586 | 7.75e-13 | 72.0 |
MS.gene045530.t1 | AT5G10630 | 25.540 | 278 | 164 | 9 | 59 | 301 | 312 | 581 | 9.01e-13 | 72.0 |
MS.gene045530.t1 | AT5G10630 | 25.540 | 278 | 164 | 9 | 59 | 301 | 241 | 510 | 9.49e-13 | 71.6 |
MS.gene045530.t1 | AT5G10630 | 25.540 | 278 | 164 | 9 | 59 | 301 | 242 | 511 | 9.50e-13 | 71.6 |
MS.gene045530.t1 | AT5G10630 | 25.540 | 278 | 164 | 9 | 59 | 301 | 242 | 511 | 9.50e-13 | 71.6 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
31015 | gene | 12325 | 25358 | 12325 | ID=MS.gene045530 |
31015 | mRNA | 12325 | 25358 | 12325 | ID=MS.gene045530.t1;Parent=MS.gene045530 |
31015 | exon | 12325 | 12645 | 12325 | ID=MS.gene045530.t1.exon1;Parent=MS.gene045530.t1 |
31015 | CDS | 12325 | 12645 | 12325 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
31015 | exon | 12730 | 12804 | 12730 | ID=MS.gene045530.t1.exon2;Parent=MS.gene045530.t1 |
31015 | CDS | 12730 | 12804 | 12730 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
31015 | exon | 14704 | 14854 | 14704 | ID=MS.gene045530.t1.exon3;Parent=MS.gene045530.t1 |
31015 | CDS | 14704 | 14854 | 14704 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
31015 | exon | 16991 | 17059 | 16991 | ID=MS.gene045530.t1.exon4;Parent=MS.gene045530.t1 |
31015 | CDS | 16991 | 17059 | 16991 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
31015 | exon | 17152 | 17324 | 17152 | ID=MS.gene045530.t1.exon5;Parent=MS.gene045530.t1 |
31015 | CDS | 17152 | 17324 | 17152 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
31015 | exon | 17705 | 17842 | 17705 | ID=MS.gene045530.t1.exon6;Parent=MS.gene045530.t1 |
31015 | CDS | 17705 | 17842 | 17705 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
31015 | exon | 18238 | 18363 | 18238 | ID=MS.gene045530.t1.exon7;Parent=MS.gene045530.t1 |
31015 | CDS | 18238 | 18363 | 18238 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
31015 | exon | 19012 | 19110 | 19012 | ID=MS.gene045530.t1.exon8;Parent=MS.gene045530.t1 |
31015 | CDS | 19012 | 19110 | 19012 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
31015 | exon | 19320 | 19440 | 19320 | ID=MS.gene045530.t1.exon9;Parent=MS.gene045530.t1 |
31015 | CDS | 19320 | 19440 | 19320 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
31015 | exon | 19531 | 19594 | 19531 | ID=MS.gene045530.t1.exon10;Parent=MS.gene045530.t1 |
31015 | CDS | 19531 | 19594 | 19531 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
31015 | exon | 20416 | 20470 | 20416 | ID=MS.gene045530.t1.exon11;Parent=MS.gene045530.t1 |
31015 | CDS | 20416 | 20470 | 20416 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
31015 | exon | 20548 | 20672 | 20548 | ID=MS.gene045530.t1.exon12;Parent=MS.gene045530.t1 |
31015 | CDS | 20548 | 20672 | 20548 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
31015 | exon | 22748 | 22821 | 22748 | ID=MS.gene045530.t1.exon13;Parent=MS.gene045530.t1 |
31015 | CDS | 22748 | 22821 | 22748 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
31015 | exon | 23164 | 23213 | 23164 | ID=MS.gene045530.t1.exon14;Parent=MS.gene045530.t1 |
31015 | CDS | 23164 | 23213 | 23164 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
31015 | exon | 23365 | 23451 | 23365 | ID=MS.gene045530.t1.exon15;Parent=MS.gene045530.t1 |
31015 | CDS | 23365 | 23451 | 23365 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
31015 | exon | 23942 | 23992 | 23942 | ID=MS.gene045530.t1.exon16;Parent=MS.gene045530.t1 |
31015 | CDS | 23942 | 23992 | 23942 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
31015 | exon | 24070 | 24153 | 24070 | ID=MS.gene045530.t1.exon17;Parent=MS.gene045530.t1 |
31015 | CDS | 24070 | 24153 | 24070 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
31015 | exon | 25325 | 25358 | 25325 | ID=MS.gene045530.t1.exon18;Parent=MS.gene045530.t1 |
31015 | CDS | 25325 | 25358 | 25325 | ID=cds.MS.gene045530.t1;Parent=MS.gene045530.t1 |
Gene Sequence |
Protein sequence |