Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04562.t1 | XP_013460180.1 | 98.5 | 472 | 7 | 0 | 44 | 515 | 45 | 516 | 1.20E-274 | 955.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04562.t1 | O82390 | 81.3 | 470 | 81 | 3 | 48 | 515 | 48 | 512 | 1.4e-223 | 776.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04562.t1 | G7ZYH1 | 98.5 | 472 | 7 | 0 | 44 | 515 | 45 | 516 | 8.4e-275 | 955.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04562 | MS.gene40160 | PPI |
| MS.gene04562 | MS.gene93642 | PPI |
| MS.gene04562 | MS.gene67345 | PPI |
| MS.gene04562 | MS.gene028573 | PPI |
| MS.gene04562 | MS.gene054996 | PPI |
| MS.gene04562 | MS.gene45934 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04562.t1 | MTR_3g463080 | 97.868 | 516 | 10 | 1 | 1 | 515 | 1 | 516 | 0.0 | 1019 |
| MS.gene04562.t1 | MTR_8g030600 | 75.214 | 468 | 108 | 3 | 56 | 515 | 121 | 588 | 0.0 | 734 |
| MS.gene04562.t1 | MTR_7g077830 | 79.446 | 433 | 87 | 1 | 85 | 515 | 102 | 534 | 0.0 | 733 |
| MS.gene04562.t1 | MTR_8g030600 | 73.057 | 386 | 96 | 3 | 56 | 433 | 121 | 506 | 0.0 | 589 |
| MS.gene04562.t1 | MTR_7g066780 | 37.805 | 492 | 301 | 4 | 26 | 514 | 17 | 506 | 1.11e-112 | 343 |
| MS.gene04562.t1 | MTR_4g116030 | 37.761 | 527 | 301 | 12 | 7 | 511 | 3 | 524 | 9.05e-111 | 339 |
| MS.gene04562.t1 | MTR_2g027710 | 82.759 | 174 | 30 | 0 | 305 | 478 | 61 | 234 | 4.53e-104 | 312 |
| MS.gene04562.t1 | MTR_5g069630 | 41.045 | 402 | 230 | 2 | 119 | 513 | 111 | 512 | 2.30e-96 | 301 |
| MS.gene04562.t1 | MTR_4g030900 | 37.642 | 441 | 247 | 7 | 102 | 515 | 4 | 443 | 7.17e-83 | 264 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04562.t1 | AT2G29650 | 76.983 | 517 | 112 | 3 | 1 | 515 | 1 | 512 | 0.0 | 783 |
| MS.gene04562.t1 | AT4G00370 | 76.923 | 455 | 101 | 2 | 65 | 515 | 87 | 541 | 0.0 | 732 |
| MS.gene04562.t1 | AT2G29650 | 87.056 | 394 | 51 | 0 | 122 | 515 | 7 | 400 | 0.0 | 708 |
| MS.gene04562.t1 | AT2G29650 | 87.436 | 390 | 49 | 0 | 126 | 515 | 1 | 390 | 0.0 | 702 |
| MS.gene04562.t1 | AT2G29650 | 72.457 | 403 | 104 | 3 | 1 | 401 | 1 | 398 | 0.0 | 563 |
| MS.gene04562.t1 | AT2G38060 | 39.364 | 503 | 283 | 8 | 32 | 513 | 10 | 511 | 2.19e-112 | 343 |
| MS.gene04562.t1 | AT5G20380 | 42.417 | 422 | 233 | 7 | 97 | 511 | 90 | 508 | 6.14e-106 | 326 |
| MS.gene04562.t1 | AT3G46980 | 39.787 | 470 | 270 | 5 | 57 | 513 | 58 | 527 | 8.36e-106 | 327 |
| MS.gene04562.t1 | AT3G46980 | 39.787 | 470 | 270 | 5 | 57 | 513 | 58 | 527 | 8.86e-106 | 327 |
| MS.gene04562.t1 | AT5G20380 | 42.417 | 422 | 233 | 7 | 97 | 511 | 142 | 560 | 2.00e-105 | 327 |
| MS.gene04562.t1 | AT3G46980 | 39.787 | 470 | 270 | 5 | 57 | 513 | 106 | 575 | 3.72e-105 | 326 |
| MS.gene04562.t1 | AT2G38060 | 40.488 | 410 | 233 | 4 | 61 | 460 | 49 | 457 | 4.47e-95 | 300 |
| MS.gene04562.t1 | AT3G46980 | 40.634 | 347 | 198 | 3 | 175 | 513 | 1 | 347 | 5.05e-83 | 262 |
| MS.gene04562.t1 | AT3G46980 | 40.634 | 347 | 198 | 3 | 175 | 513 | 1 | 347 | 5.05e-83 | 262 |
| MS.gene04562.t1 | AT3G46980 | 40.634 | 347 | 198 | 3 | 175 | 513 | 1 | 347 | 5.28e-83 | 261 |
| MS.gene04562.t1 | AT3G46980 | 40.634 | 347 | 198 | 3 | 175 | 513 | 1 | 347 | 5.28e-83 | 261 |
| MS.gene04562.t1 | AT5G44370 | 36.552 | 435 | 245 | 7 | 103 | 515 | 7 | 432 | 1.68e-80 | 258 |
| MS.gene04562.t1 | AT3G46980 | 38.298 | 282 | 166 | 3 | 240 | 513 | 2 | 283 | 5.47e-60 | 199 |
Find 142 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCAATTTCTGCAAATTT+TGG | 0.155639 | 3.1:-47123570 | MS.gene04562:CDS |
| TAGTACAGTCTTCTTTCTTT+TGG | 0.193133 | 3.1:-47125237 | MS.gene04562:CDS |
| TGAATAATATTCTGTCAAAA+TGG | 0.210887 | 3.1:-47124786 | MS.gene04562:CDS |
| GGCAAAAGTGGGACACTATC+AGG | 0.253332 | 3.1:+47124317 | None:intergenic |
| ATGCAAACAGTTGGGTTTCT+TGG | 0.260195 | 3.1:-47123391 | MS.gene04562:CDS |
| GGTTTCAGTTGGGCTATATT+TGG | 0.289577 | 3.1:-47122166 | MS.gene04562:CDS |
| CCTTTCCTGATTCACCAGTA+TGG | 0.295712 | 3.1:-47124679 | MS.gene04562:CDS |
| AAGTTCAATCTTACAGAATC+TGG | 0.297006 | 3.1:-47123621 | MS.gene04562:CDS |
| TGCAGATTGCTGGTGGAATA+TGG | 0.310507 | 3.1:-47125105 | MS.gene04562:intron |
| TTGGTTCTCTAGGAACAATT+TGG | 0.318484 | 3.1:-47124633 | MS.gene04562:CDS |
| GTTTGGCAGCTACGGGAGTT+AGG | 0.354746 | 3.1:+47125017 | None:intergenic |
| ATAACAATAACCCATCTCTT+AGG | 0.357009 | 3.1:+47126505 | None:intergenic |
| AATCCACTTACAGAATATCT+AGG | 0.360361 | 3.1:+47122687 | None:intergenic |
| ATTAGTTGCCCGTGCATTCA+TGG | 0.371690 | 3.1:-47124978 | MS.gene04562:CDS |
| TAGAAAAGGCAATCCAAGTT+TGG | 0.374667 | 3.1:+47125000 | None:intergenic |
| ATCTAGGGGCTATATCTTGA+TGG | 0.391646 | 3.1:+47122703 | None:intergenic |
| GCCATCCATACTGGTGAATC+AGG | 0.393766 | 3.1:+47124674 | None:intergenic |
| TATTTCCTTCACAGGTTCCT+TGG | 0.393829 | 3.1:+47124378 | None:intergenic |
| AGATACTTGTTGCAGATTGC+TGG | 0.402333 | 3.1:-47125115 | MS.gene04562:intron |
| CAATGTCAGCAGAGTACAAC+TGG | 0.414950 | 3.1:-47125279 | MS.gene04562:CDS |
| GCCCGTGCATTCATGGGAAT+TGG | 0.421683 | 3.1:-47124971 | MS.gene04562:CDS |
| ACCTGTGAAGGAAATACCTT+GGG | 0.422628 | 3.1:-47124371 | MS.gene04562:CDS |
| TAAGAAAGTAGTAAGTGGTT+TGG | 0.423850 | 3.1:-47126584 | MS.gene04562:CDS |
| AGCTAGCACTCCAGCAGTAT+TGG | 0.431527 | 3.1:+47122526 | None:intergenic |
| CCCCAAGGTATTTCCTTCAC+AGG | 0.432539 | 3.1:+47124370 | None:intergenic |
| ACACTGATGGCCATCCATAC+TGG | 0.434066 | 3.1:+47124665 | None:intergenic |
| GAACTTTCATTCTTCTTACA+TGG | 0.440920 | 3.1:-47124285 | MS.gene04562:CDS |
| GGTGATGATGTTGAGGTAGA+AGG | 0.444357 | 3.1:-47126559 | MS.gene04562:CDS |
| GTCCTTGGAACAGCAGCAAC+AGG | 0.445368 | 3.1:-47122500 | MS.gene04562:CDS |
| GAATAATATTCTGTCAAAAT+GGG | 0.446232 | 3.1:-47124785 | MS.gene04562:CDS |
| TGCAGATAATGCAAACAGTT+GGG | 0.451193 | 3.1:-47123399 | MS.gene04562:intron |
| CAATCCAAGTTTGGCAGCTA+CGG | 0.451750 | 3.1:+47125009 | None:intergenic |
| ACTCCCGTAGCTGCCAAACT+TGG | 0.453418 | 3.1:-47125013 | MS.gene04562:CDS |
| CTTACTTGATTATAGTATGT+TGG | 0.454637 | 3.1:+47124259 | None:intergenic |
| GGAGTGCTAGCTGGTGTCCT+TGG | 0.456716 | 3.1:-47122515 | MS.gene04562:CDS |
| TTGCAGATAATGCAAACAGT+TGG | 0.460476 | 3.1:-47123400 | MS.gene04562:intron |
| TGGAATATGGGCGGACACAG+TGG | 0.462133 | 3.1:-47125092 | MS.gene04562:CDS |
| ACTGATGCATTCTCTCAGTC+TGG | 0.465048 | 3.1:-47122738 | MS.gene04562:CDS |
| TTTGTCGAAACCACCAGTTT+GGG | 0.469448 | 3.1:-47124341 | MS.gene04562:CDS |
| TCAGTTGGGCTATATTTGGT+TGG | 0.470220 | 3.1:-47122162 | MS.gene04562:CDS |
| ACACCTTCCCTCTTCCTCTC+CGG | 0.472346 | 3.1:+47126674 | None:intergenic |
| ATCCACTTACAGAATATCTA+GGG | 0.477960 | 3.1:+47122688 | None:intergenic |
| CTCGGTCTATCCAATACTGC+TGG | 0.479482 | 3.1:-47122536 | MS.gene04562:CDS |
| CTGTGTCACCGGAGAGGAAG+AGG | 0.479989 | 3.1:-47126682 | MS.gene04562:CDS |
| TTCCCCAGTTGTGGCAAAAG+TGG | 0.480489 | 3.1:+47124305 | None:intergenic |
| TAGCATTTGGCGTCATTTGG+TGG | 0.480914 | 3.1:-47125054 | MS.gene04562:CDS |
| TTACTAGGGTGTTGCTATGC+CGG | 0.487176 | 3.1:-47124812 | MS.gene04562:intron |
| CCTTGGATCGGTCACTGGAT+TGG | 0.489429 | 3.1:-47124710 | MS.gene04562:CDS |
| TCATACTTACTTGATGCCTC+TGG | 0.490752 | 3.1:+47126622 | None:intergenic |
| CCCGAGGTGTATCTGTTACA+AGG | 0.491771 | 3.1:-47123521 | MS.gene04562:CDS |
| CATTGCACCTGCTGTGTCAC+CGG | 0.492613 | 3.1:-47126693 | MS.gene04562:CDS |
| TTCCTCTCCGGTGACACAGC+AGG | 0.496137 | 3.1:+47126686 | None:intergenic |
| AGTTGAGTTAAGAAGAAAGC+AGG | 0.501347 | 3.1:+47123367 | None:intergenic |
| GTTGTGTATGACTTGCAGTC+AGG | 0.504023 | 3.1:-47123314 | MS.gene04562:intron |
| GACACTATCAGGGCCCAAAC+TGG | 0.504125 | 3.1:+47124328 | None:intergenic |
| GAGAAGTAGATCATTAGCTC+TGG | 0.509100 | 3.1:-47124749 | MS.gene04562:CDS |
| GTGAATCAGGAAAGGTGAAA+AGG | 0.509896 | 3.1:+47124687 | None:intergenic |
| AATCCAAGTTTGGCAGCTAC+GGG | 0.510619 | 3.1:+47125010 | None:intergenic |
| GAAGAAGAAGAAGGTGATGG+TGG | 0.511806 | 3.1:+47126778 | None:intergenic |
| CACAGCAGGTGCAATGGAAA+CGG | 0.512666 | 3.1:+47126700 | None:intergenic |
| GGAATATGGGCGGACACAGT+GGG | 0.515501 | 3.1:-47125091 | MS.gene04562:CDS |
| ATGTACCTTGGATCGGTCAC+TGG | 0.517053 | 3.1:-47124715 | MS.gene04562:CDS |
| TTAGTTGCCCGTGCATTCAT+GGG | 0.520099 | 3.1:-47124977 | MS.gene04562:CDS |
| GTTCATAAGAAAGTAGTAAG+TGG | 0.520316 | 3.1:-47126589 | MS.gene04562:CDS |
| AAGGAACAAGCTCTTCTCCT+TGG | 0.521751 | 3.1:-47126540 | MS.gene04562:CDS |
| GACAGAATATTATTCATGGC+CGG | 0.522317 | 3.1:+47124793 | None:intergenic |
| GCACGGGCAACTAATAGAAA+AGG | 0.522495 | 3.1:+47124986 | None:intergenic |
| TCCTGATTCACCAGTATGGA+TGG | 0.522690 | 3.1:-47124675 | MS.gene04562:CDS |
| GCAGATTGCTGGTGGAATAT+GGG | 0.526541 | 3.1:-47125104 | MS.gene04562:intron |
| CACCAATTCCCATGAATGCA+CGG | 0.527914 | 3.1:+47124969 | None:intergenic |
| GGAGAGGAAGAGGGAAGGTG+TGG | 0.529959 | 3.1:-47126672 | MS.gene04562:CDS |
| AAGAAGTTGATTGCTACAAA+CGG | 0.531136 | 3.1:-47124406 | MS.gene04562:CDS |
| TGAATGGTTGATGAGAGTTC+TGG | 0.533134 | 3.1:+47126729 | None:intergenic |
| GTATACAGTGGCATGTACCT+TGG | 0.538242 | 3.1:-47124727 | MS.gene04562:CDS |
| GAGAGGAAGAGGGAAGGTGT+GGG | 0.541836 | 3.1:-47126671 | MS.gene04562:CDS |
| AATACTGCTGGAGTGCTAGC+TGG | 0.544126 | 3.1:-47122524 | MS.gene04562:CDS |
| AACCTGTGAAGGAAATACCT+TGG | 0.548334 | 3.1:-47124372 | MS.gene04562:CDS |
| AGAGGCATCAAGTAAGTATG+AGG | 0.551649 | 3.1:-47126620 | MS.gene04562:CDS |
| GAACAAGCTCTTCTCCTTGG+TGG | 0.552276 | 3.1:-47126537 | MS.gene04562:CDS |
| AACAAGCTCTTCTCCTTGGT+GGG | 0.552346 | 3.1:-47126536 | MS.gene04562:CDS |
| GAATGAAAGTTCCCCAGTTG+TGG | 0.554343 | 3.1:+47124296 | None:intergenic |
| CAGTTGTACTCTGCTGACAT+TGG | 0.556876 | 3.1:+47125280 | None:intergenic |
| CCACATTGATTCTCCTGTGG+TGG | 0.558004 | 3.1:-47123341 | MS.gene04562:CDS |
| CGGTGACACAGCAGGTGCAA+TGG | 0.559969 | 3.1:+47126694 | None:intergenic |
| GGGAGTTAGGATTGTGGCAA+CGG | 0.560055 | 3.1:+47125030 | None:intergenic |
| ATCTGTTACAAGGGTTCGCA+AGG | 0.562047 | 3.1:-47123511 | MS.gene04562:intron |
| AAAGTAGTAAGTGGTTTGGA+TGG | 0.562988 | 3.1:-47126580 | MS.gene04562:CDS |
| TTGGGGATACCTCCTCACTC+AGG | 0.564095 | 3.1:-47125218 | MS.gene04562:intron |
| ATGTTAAGTCTGAGAAGCAT+GGG | 0.564348 | 3.1:-47126645 | MS.gene04562:CDS |
| TCTTCTCAGGGGATATTGCT+CGG | 0.566814 | 3.1:-47122554 | MS.gene04562:intron |
| AGGTGCAATGGAAACGGAGA+AGG | 0.568561 | 3.1:+47126706 | None:intergenic |
| CCGAGGTGTATCTGTTACAA+GGG | 0.569335 | 3.1:-47123520 | MS.gene04562:CDS |
| GATCTACTTCTCTCTGCCAC+AGG | 0.573723 | 3.1:+47124760 | None:intergenic |
| TGTACTAAACCTACAGTGGT+GGG | 0.573906 | 3.1:+47125253 | None:intergenic |
| ACCAATTCCCATGAATGCAC+GGG | 0.574833 | 3.1:+47124970 | None:intergenic |
| GTCTGAGAAGCATGGGCCAG+AGG | 0.575496 | 3.1:-47126638 | MS.gene04562:CDS |
| TTCGACAAAATTAATCCCCA+AGG | 0.576040 | 3.1:+47124355 | None:intergenic |
| TCCCCAGTTGTGGCAAAAGT+GGG | 0.577515 | 3.1:+47124306 | None:intergenic |
| TTTGGATGGTGATGATGTTG+AGG | 0.582526 | 3.1:-47126566 | MS.gene04562:CDS |
| CGCATTTCAGGATCATCAAG+TGG | 0.585309 | 3.1:+47124439 | None:intergenic |
| CTGTACTAAACCTACAGTGG+TGG | 0.586896 | 3.1:+47125252 | None:intergenic |
| GATGTTAAGTCTGAGAAGCA+TGG | 0.588801 | 3.1:-47126646 | MS.gene04562:CDS |
| GCAAAAGTGGGACACTATCA+GGG | 0.591083 | 3.1:+47124318 | None:intergenic |
| AATTGTTCCTAGAGAACCAA+AGG | 0.595025 | 3.1:+47124636 | None:intergenic |
| TGTGTCACCGGAGAGGAAGA+GGG | 0.604856 | 3.1:-47126681 | MS.gene04562:CDS |
| TACTTGTTGCAGATTGCTGG+TGG | 0.606708 | 3.1:-47125112 | MS.gene04562:intron |
| CCAATCCAGTGACCGATCCA+AGG | 0.609770 | 3.1:+47124710 | None:intergenic |
| AACCTGTTGCTGCTGTTCCA+AGG | 0.609936 | 3.1:+47122498 | None:intergenic |
| GCTATATTTGGTTGGAACCG+TGG | 0.610518 | 3.1:-47122154 | MS.gene04562:CDS |
| ATGGAAACGGAGAAGGTGAA+TGG | 0.615461 | 3.1:+47126713 | None:intergenic |
| CAGTGGCATGTACCTTGGAT+CGG | 0.616265 | 3.1:-47124722 | MS.gene04562:CDS |
| CCCTTGTAACAGATACACCT+CGG | 0.616464 | 3.1:+47123520 | None:intergenic |
| AACTGGAACCCCACCACTGT+AGG | 0.618941 | 3.1:-47125262 | MS.gene04562:CDS |
| GTTGAGTTAAGAAGAAAGCA+GGG | 0.621263 | 3.1:+47123368 | None:intergenic |
| CCTTGTAACAGATACACCTC+GGG | 0.624936 | 3.1:+47123521 | None:intergenic |
| TCTGTCAAAATGGGTTCCTG+TGG | 0.627501 | 3.1:-47124776 | MS.gene04562:CDS |
| CCAAAGGAGTAAAACACTGA+TGG | 0.628506 | 3.1:+47124652 | None:intergenic |
| ACAGGTTACATTCTGCAGCA+TGG | 0.629656 | 3.1:-47122482 | MS.gene04562:intron |
| CCATACTGGTGAATCAGGAA+AGG | 0.630298 | 3.1:+47124679 | None:intergenic |
| GAAATTGCCATAGTAAGCCA+TGG | 0.638270 | 3.1:+47123582 | None:intergenic |
| ATTTGGTTGGAACCGTGGTG+TGG | 0.639464 | 3.1:-47122149 | MS.gene04562:CDS |
| CACTTGATGATCCTGAAATG+CGG | 0.647130 | 3.1:-47124438 | MS.gene04562:CDS |
| TGCATTCATGGGAATTGGTG+AGG | 0.647999 | 3.1:-47124966 | MS.gene04562:intron |
| ATACACAACACAGCCACCAC+AGG | 0.650207 | 3.1:+47123328 | None:intergenic |
| GTACTAAACCTACAGTGGTG+GGG | 0.651673 | 3.1:+47125254 | None:intergenic |
| ATATGGGCGGACACAGTGGG+AGG | 0.653614 | 3.1:-47125088 | MS.gene04562:CDS |
| ACTATCAGGGCCCAAACTGG+TGG | 0.653748 | 3.1:+47124331 | None:intergenic |
| CACCTGCTGTGTCACCGGAG+AGG | 0.665468 | 3.1:-47126688 | MS.gene04562:CDS |
| GAGCCACATTGATTCTCCTG+TGG | 0.666663 | 3.1:-47123344 | MS.gene04562:CDS |
| AGACTGTACTAAACCTACAG+TGG | 0.666932 | 3.1:+47125249 | None:intergenic |
| AGCTACGGGAGTTAGGATTG+TGG | 0.669995 | 3.1:+47125024 | None:intergenic |
| TCACCGGAGAGGAAGAGGGA+AGG | 0.672873 | 3.1:-47126677 | MS.gene04562:CDS |
| TCCACTTACAGAATATCTAG+GGG | 0.679967 | 3.1:+47122689 | None:intergenic |
| TGAAACCACATACCTGAGTG+AGG | 0.683840 | 3.1:+47125206 | None:intergenic |
| AGAGTTCTGGTACGTGACAG+TGG | 0.687788 | 3.1:+47126742 | None:intergenic |
| GCAGACACTCTTGTAACCCG+AGG | 0.688978 | 3.1:-47123537 | MS.gene04562:CDS |
| TCATTAGCTCTGGTATACAG+TGG | 0.696345 | 3.1:-47124739 | MS.gene04562:CDS |
| CGAGAAAAGGTTCCACACCA+CGG | 0.697691 | 3.1:+47122137 | None:intergenic |
| AACCACATACCTGAGTGAGG+AGG | 0.707329 | 3.1:+47125209 | None:intergenic |
| GATTGCTGGTGGAATATGGG+CGG | 0.729689 | 3.1:-47125101 | MS.gene04562:CDS |
| CCACCACAGGAGAATCAATG+TGG | 0.729771 | 3.1:+47123341 | None:intergenic |
| CCTGTGAAGGAAATACCTTG+GGG | 0.772599 | 3.1:-47124370 | MS.gene04562:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAAATTACAAAAAAGT+TGG | - | chr3.1:47122518-47122537 | MS.gene04562:CDS | 10.0% |
| !!! | AATTTTATTATATCTCTTTA+TGG | - | chr3.1:47126552-47126571 | MS.gene04562:CDS | 10.0% |
| !! | GAATAAATCAAGTATAAATA+TGG | + | chr3.1:47125205-47125224 | None:intergenic | 15.0% |
| !! | TTATTCTTACTAAATGTTAA+TGG | - | chr3.1:47126485-47126504 | MS.gene04562:CDS | 15.0% |
| !!! | TATTTTCAAATTTATATCAC+AGG | - | chr3.1:47125275-47125294 | MS.gene04562:CDS | 15.0% |
| !! | AAAACAGTTTATAGCTTATA+CGG | - | chr3.1:47123041-47123060 | MS.gene04562:intron | 20.0% |
| !! | AAACTTAAAATATTACGTGA+AGG | - | chr3.1:47126522-47126541 | MS.gene04562:CDS | 20.0% |
| !! | AAAGAAATAGTTTCAATTTG+TGG | + | chr3.1:47124835-47124854 | None:intergenic | 20.0% |
| !! | AAGAAAAACTAAAAAAGAGA+AGG | + | chr3.1:47125460-47125479 | None:intergenic | 20.0% |
| !! | AAGTGAAATGTAATTGATTA+AGG | - | chr3.1:47122916-47122935 | MS.gene04562:intron | 20.0% |
| !! | AATAAGTTGTTTATCCAAAT+AGG | - | chr3.1:47123122-47123141 | MS.gene04562:intron | 20.0% |
| !! | AGTGAAATGTAATTGATTAA+GGG | - | chr3.1:47122917-47122936 | MS.gene04562:intron | 20.0% |
| !! | ATAAGTTGTTTATCCAAATA+GGG | - | chr3.1:47123123-47123142 | MS.gene04562:intron | 20.0% |
| !! | ATGATAATTTCTCAATTCAA+TGG | + | chr3.1:47125064-47125083 | None:intergenic | 20.0% |
| !! | ATTACAAAAAAGTTGGATAT+TGG | - | chr3.1:47122525-47122544 | MS.gene04562:CDS | 20.0% |
| !! | GAATAATATTCTGTCAAAAT+GGG | - | chr3.1:47124139-47124158 | MS.gene04562:intron | 20.0% |
| !! | GTTAAAAACTAATCTAAACT+AGG | + | chr3.1:47123156-47123175 | None:intergenic | 20.0% |
| !! | GTTTATTAATAGAAATACCT+TGG | + | chr3.1:47124890-47124909 | None:intergenic | 20.0% |
| !! | TGAATAATATTCTGTCAAAA+TGG | - | chr3.1:47124138-47124157 | MS.gene04562:intron | 20.0% |
| !! | TTTCATTCTTATTAACTAAG+AGG | - | chr3.1:47123205-47123224 | MS.gene04562:intron | 20.0% |
| !!! | CAAGTAAGTTTTTCTTTTTT+TGG | - | chr3.1:47124680-47124699 | MS.gene04562:CDS | 20.0% |
| !!! | TTAGATTAGTTTTTAACCTA+TGG | - | chr3.1:47123159-47123178 | MS.gene04562:intron | 20.0% |
| !!! | TTTTGACAGAATATTATTCA+TGG | + | chr3.1:47124138-47124157 | None:intergenic | 20.0% |
| ! | AAATAAGTAAAGAGAATGGA+TGG | + | chr3.1:47126712-47126731 | None:intergenic | 25.0% |
| ! | AACTTAATGAGTTAGTTAGT+TGG | + | chr3.1:47122794-47122813 | None:intergenic | 25.0% |
| ! | AAGAAGATAATCAACCTAAA+AGG | + | chr3.1:47125010-47125029 | None:intergenic | 25.0% |
| ! | ACTTTCTCCAGAAATATTTA+AGG | + | chr3.1:47125728-47125747 | None:intergenic | 25.0% |
| ! | AGAAGATAATCAACCTAAAA+GGG | + | chr3.1:47125009-47125028 | None:intergenic | 25.0% |
| ! | AGGAAAAATTTAAACAAGTG+AGG | + | chr3.1:47126157-47126176 | None:intergenic | 25.0% |
| ! | AGGTAAAAATTAAATGTGCA+TGG | + | chr3.1:47122846-47122865 | None:intergenic | 25.0% |
| ! | ATCAAATCATTACTAGTATC+AGG | + | chr3.1:47124025-47124044 | None:intergenic | 25.0% |
| ! | ATTCACAATCCTTCATATTA+CGG | - | chr3.1:47123320-47123339 | MS.gene04562:CDS | 25.0% |
| ! | ATTTATGGCTATGTAATCAT+AGG | - | chr3.1:47123467-47123486 | MS.gene04562:intron | 25.0% |
| ! | ATTTCCTATATATCTTCTCA+GGG | - | chr3.1:47126358-47126377 | MS.gene04562:intron | 25.0% |
| ! | CAATAGATTATGTTACTATC+AGG | + | chr3.1:47125088-47125107 | None:intergenic | 25.0% |
| ! | CATATAAGATGTTGAAAAAG+TGG | + | chr3.1:47122494-47122513 | None:intergenic | 25.0% |
| ! | CTGAAAATAAGTAAAGAGAA+TGG | + | chr3.1:47126716-47126735 | None:intergenic | 25.0% |
| ! | CTTACTTGATTATAGTATGT+TGG | + | chr3.1:47124668-47124687 | None:intergenic | 25.0% |
| ! | GTAGATACACTTACTAATTT+AGG | - | chr3.1:47122609-47122628 | MS.gene04562:intron | 25.0% |
| ! | GTTATTACTCGTATTGTAAT+TGG | - | chr3.1:47122887-47122906 | MS.gene04562:intron | 25.0% |
| ! | TCAAATCATTACTAGTATCA+GGG | + | chr3.1:47124024-47124043 | None:intergenic | 25.0% |
| ! | TGTTAATGGTCAATTTATCT+CGG | - | chr3.1:47126499-47126518 | MS.gene04562:CDS | 25.0% |
| ! | TTTATGGCTATGTAATCATA+GGG | - | chr3.1:47123468-47123487 | MS.gene04562:intron | 25.0% |
| !! | AATGATTTGATTCGTATAGT+TGG | - | chr3.1:47124034-47124053 | MS.gene04562:intron | 25.0% |
| !! | ATGATAAGCAAATGTACTTT+TGG | - | chr3.1:47124803-47124822 | MS.gene04562:CDS | 25.0% |
| !! | CATAAAAAACCTTGATGTTT+TGG | - | chr3.1:47123362-47123381 | MS.gene04562:CDS | 25.0% |
| !! | CTTGTTACTTAGAAGATTTA+TGG | - | chr3.1:47123452-47123471 | MS.gene04562:intron | 25.0% |
| !! | GTTTAAATTTTTCCTGATCA+GGG | - | chr3.1:47126162-47126181 | MS.gene04562:intron | 25.0% |
| !! | TAAGATTTCATCGAAGTATT+AGG | + | chr3.1:47126667-47126686 | None:intergenic | 25.0% |
| !! | TGCTTTTCTTCTATGTAATA+TGG | - | chr3.1:47122454-47122473 | MS.gene04562:intron | 25.0% |
| !! | TGTTTAAATTTTTCCTGATC+AGG | - | chr3.1:47126161-47126180 | MS.gene04562:intron | 25.0% |
| !!! | AGAAACTGTTTTTGAAATAC+TGG | - | chr3.1:47123400-47123419 | MS.gene04562:intron | 25.0% |
| !!! | ATGCACATTTAATTTTTACC+TGG | - | chr3.1:47122845-47122864 | MS.gene04562:intron | 25.0% |
| !!! | CAATCTGAAAAGTATCAATT+TGG | - | chr3.1:47126605-47126624 | MS.gene04562:CDS | 25.0% |
| !!! | CATTCTCTTTACTTATTTTC+AGG | - | chr3.1:47126714-47126733 | MS.gene04562:CDS | 25.0% |
| !!! | GAACAATTTGGTTTTGTATA+TGG | - | chr3.1:47124303-47124322 | MS.gene04562:CDS | 25.0% |
| AAGCATTTCTATCGAGAAAA+AGG | + | chr3.1:47124404-47124423 | None:intergenic | 30.0% | |
| AAGTTCAATCTTACAGAATC+TGG | - | chr3.1:47125303-47125322 | MS.gene04562:CDS | 30.0% | |
| AATCCACTTACAGAATATCT+AGG | + | chr3.1:47126240-47126259 | None:intergenic | 30.0% | |
| ACTAATCTAAACTAGGCTTA+AGG | + | chr3.1:47123149-47123168 | None:intergenic | 30.0% | |
| ACTTATTTGAGCTTATCTAC+CGG | - | chr3.1:47122953-47122972 | MS.gene04562:intron | 30.0% | |
| AGAGAAGGAAAAAAAGTTGA+AGG | + | chr3.1:47125445-47125464 | None:intergenic | 30.0% | |
| AGCATTTCTATCGAGAAAAA+GGG | + | chr3.1:47124403-47124422 | None:intergenic | 30.0% | |
| AGGGTGTACATATTTCATAA+AGG | + | chr3.1:47124384-47124403 | None:intergenic | 30.0% | |
| ATAACAATAACCCATCTCTT+AGG | + | chr3.1:47122422-47122441 | None:intergenic | 30.0% | |
| ATCCACTTACAGAATATCTA+GGG | + | chr3.1:47126239-47126258 | None:intergenic | 30.0% | |
| CATTTCCTATATATCTTCTC+AGG | - | chr3.1:47126357-47126376 | MS.gene04562:intron | 30.0% | |
| CTCTAATTAGAAACTTCCAT+AGG | + | chr3.1:47123178-47123197 | None:intergenic | 30.0% | |
| GAACTTTCATTCTTCTTACA+TGG | - | chr3.1:47124639-47124658 | MS.gene04562:CDS | 30.0% | |
| GAGAAGGAAAAAAAGTTGAA+GGG | + | chr3.1:47125444-47125463 | None:intergenic | 30.0% | |
| GGCTTGAAGTTCAAAATTAA+GGG | + | chr3.1:47123770-47123789 | None:intergenic | 30.0% | |
| GTCTCATCCTTAAATATTTC+TGG | - | chr3.1:47125718-47125737 | MS.gene04562:intron | 30.0% | |
| GTTCATAAGAAAGTAGTAAG+TGG | - | chr3.1:47122335-47122354 | MS.gene04562:intron | 30.0% | |
| TAAGAAAGTAGTAAGTGGTT+TGG | - | chr3.1:47122340-47122359 | MS.gene04562:intron | 30.0% | |
| TGGATTGTTTACTAAGTATG+CGG | - | chr3.1:47124700-47124719 | MS.gene04562:CDS | 30.0% | |
| TGGCTTGAAGTTCAAAATTA+AGG | + | chr3.1:47123771-47123790 | None:intergenic | 30.0% | |
| TTGCGAATAGCAGAAAATAA+TGG | - | chr3.1:47125785-47125804 | MS.gene04562:intron | 30.0% | |
| TTTCCTATATATCTTCTCAG+GGG | - | chr3.1:47126359-47126378 | MS.gene04562:intron | 30.0% | |
| ! | AAGAAGTTGATTGCTACAAA+CGG | - | chr3.1:47124518-47124537 | MS.gene04562:intron | 30.0% |
| ! | AGTACAGTCTTCTTTCTTTT+GGG | - | chr3.1:47123688-47123707 | MS.gene04562:intron | 30.0% |
| ! | ATGGCAATTTCTGCAAATTT+TGG | - | chr3.1:47125354-47125373 | MS.gene04562:intron | 30.0% |
| ! | ATTGCTCTTTTCACATTTAC+AGG | - | chr3.1:47123598-47123617 | MS.gene04562:CDS | 30.0% |
| ! | CAGTTATTTCCAAAACATCA+AGG | + | chr3.1:47123374-47123393 | None:intergenic | 30.0% |
| ! | GTTTTCAGCTTATAGGATAA+CGG | - | chr3.1:47123015-47123034 | MS.gene04562:intron | 30.0% |
| ! | GTTTTGTATATGGCTTAGTA+AGG | - | chr3.1:47124313-47124332 | MS.gene04562:CDS | 30.0% |
| ! | TAAGCAAATGTACTTTTGGT+TGG | - | chr3.1:47124807-47124826 | MS.gene04562:CDS | 30.0% |
| ! | TAATTTTGAACTTCAAGCCA+TGG | - | chr3.1:47123771-47123790 | MS.gene04562:intron | 30.0% |
| ! | TAGTACAGTCTTCTTTCTTT+TGG | - | chr3.1:47123687-47123706 | MS.gene04562:intron | 30.0% |
| ! | TTAGTCTATGATCTTTTCAC+CGG | + | chr3.1:47126814-47126833 | None:intergenic | 30.0% |
| !! | ATAAGCTGTTTTCAGCTTAT+AGG | - | chr3.1:47123008-47123027 | MS.gene04562:intron | 30.0% |
| !! | ATGTTTTCAAGGTTTCAGTT+GGG | - | chr3.1:47126748-47126767 | MS.gene04562:CDS | 30.0% |
| !! | ATTTAATTTTTACCTGGTCC+AGG | - | chr3.1:47122851-47122870 | MS.gene04562:intron | 30.0% |
| !! | TAAAGGAAGCATTTATGTGA+AGG | + | chr3.1:47124367-47124386 | None:intergenic | 30.0% |
| !! | TTACTTATTTTCAGGCTCAT+GGG | - | chr3.1:47126722-47126741 | MS.gene04562:CDS | 30.0% |
| !! | TTTACTTATTTTCAGGCTCA+TGG | - | chr3.1:47126721-47126740 | MS.gene04562:CDS | 30.0% |
| !!! | CCAGTTTTCTGTGTTTTTTT+GGG | - | chr3.1:47124442-47124461 | MS.gene04562:CDS | 30.0% |
| !!! | CTTTTAGTTTTTACAGTCCA+AGG | - | chr3.1:47124870-47124889 | MS.gene04562:intron | 30.0% |
| !!! | GTTTGCTTCTTGTTTTGTAT+TGG | - | chr3.1:47125632-47125651 | MS.gene04562:intron | 30.0% |
| !!! | TGATGTTTTGGAAATAACTG+TGG | - | chr3.1:47123374-47123393 | MS.gene04562:CDS | 30.0% |
| AAAAGTTCAGCTAGTGAACA+AGG | - | chr3.1:47123279-47123298 | MS.gene04562:intron | 35.0% | |
| AACTTCTTCTGGATCTTACT+AGG | - | chr3.1:47124097-47124116 | MS.gene04562:intron | 35.0% | |
| AAGTTAGTTGCTAATGTACC+AGG | + | chr3.1:47122740-47122759 | None:intergenic | 35.0% | |
| AATTGTTCCTAGAGAACCAA+AGG | + | chr3.1:47124291-47124310 | None:intergenic | 35.0% | |
| ACCACTGCAATACTAATCTA+AGG | + | chr3.1:47123549-47123568 | None:intergenic | 35.0% | |
| ACCTTAGATTAGTATTGCAG+TGG | - | chr3.1:47123545-47123564 | MS.gene04562:CDS | 35.0% | |
| ACTTCTTCTGGATCTTACTA+GGG | - | chr3.1:47124098-47124117 | MS.gene04562:intron | 35.0% | |
| AGTACCATGACTGTTTATTC+CGG | + | chr3.1:47122975-47122994 | None:intergenic | 35.0% | |
| AGTTGAGTTAAGAAGAAAGC+AGG | + | chr3.1:47125560-47125579 | None:intergenic | 35.0% | |
| ATAACATAAACAGCTTCTCC+TGG | + | chr3.1:47122872-47122891 | None:intergenic | 35.0% | |
| ATTCTACAAGACTCTGACTT+TGG | + | chr3.1:47125973-47125992 | None:intergenic | 35.0% | |
| CAATCTGCAACAAGTATCTA+CGG | + | chr3.1:47123808-47123827 | None:intergenic | 35.0% | |
| CACGAATAGAATCAGAAGAA+TGG | + | chr3.1:47125035-47125054 | None:intergenic | 35.0% | |
| CCCAAAAAAACACAGAAAAC+TGG | + | chr3.1:47124445-47124464 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+AGG | + | chr3.1:47122158-47122177 | None:intergenic | 35.0% | |
| GACAGAATATTATTCATGGC+CGG | + | chr3.1:47124134-47124153 | None:intergenic | 35.0% | |
| GAGACTATGTTGTCAAATAG+TGG | + | chr3.1:47125951-47125970 | None:intergenic | 35.0% | |
| GCAACTTTACCGTAATATGA+AGG | + | chr3.1:47123332-47123351 | None:intergenic | 35.0% | |
| GTTGAGTTAAGAAGAAAGCA+GGG | + | chr3.1:47125559-47125578 | None:intergenic | 35.0% | |
| TAGAAAAGGCAATCCAAGTT+TGG | + | chr3.1:47123927-47123946 | None:intergenic | 35.0% | |
| TATCCCCTGAGAAGATATAT+AGG | + | chr3.1:47126365-47126384 | None:intergenic | 35.0% | |
| TCCAATACTCCAATGAATTG+CGG | - | chr3.1:47123491-47123510 | MS.gene04562:intron | 35.0% | |
| TCCACTTACAGAATATCTAG+GGG | + | chr3.1:47126238-47126257 | None:intergenic | 35.0% | |
| TGCAGATAATGCAAACAGTT+GGG | - | chr3.1:47125525-47125544 | MS.gene04562:intron | 35.0% | |
| TGTTTACTAAGTATGCGGTT+TGG | - | chr3.1:47124705-47124724 | MS.gene04562:CDS | 35.0% | |
| TTCGACAAAATTAATCCCCA+AGG | + | chr3.1:47124572-47124591 | None:intergenic | 35.0% | |
| TTGCAGATAATGCAAACAGT+TGG | - | chr3.1:47125524-47125543 | MS.gene04562:intron | 35.0% | |
| ! | AAAACCTTAGTCTCCCTTTT+AGG | - | chr3.1:47124993-47125012 | MS.gene04562:CDS | 35.0% |
| ! | AAAAGGGAGACTAAGGTTTT+CGG | + | chr3.1:47124993-47125012 | None:intergenic | 35.0% |
| ! | AAAGTAGTAAGTGGTTTGGA+TGG | - | chr3.1:47122344-47122363 | MS.gene04562:intron | 35.0% |
| ! | ATGTTAAGTCTGAGAAGCAT+GGG | - | chr3.1:47122279-47122298 | MS.gene04562:intron | 35.0% |
| ! | GACTATTTTGCGTTTTACCA+TGG | - | chr3.1:47125325-47125344 | MS.gene04562:intron | 35.0% |
| ! | GCAATCAACTTCTTTTCTTC+TGG | + | chr3.1:47124512-47124531 | None:intergenic | 35.0% |
| ! | GCAATTTCTGCAAATTTTGG+TGG | - | chr3.1:47125357-47125376 | MS.gene04562:intron | 35.0% |
| ! | GGAAGTTTTTCCTAAGAGAT+GGG | - | chr3.1:47122409-47122428 | MS.gene04562:intron | 35.0% |
| ! | GTAAGTGGATTTATTGTTCC+TGG | - | chr3.1:47126249-47126268 | MS.gene04562:intron | 35.0% |
| ! | GTACAGTCTTCTTTCTTTTG+GGG | - | chr3.1:47123689-47123708 | MS.gene04562:intron | 35.0% |
| ! | TTGGTTCTCTAGGAACAATT+TGG | - | chr3.1:47124291-47124310 | MS.gene04562:CDS | 35.0% |
| ! | TTTTAGCATTTGGCGTCATT+TGG | - | chr3.1:47123867-47123886 | MS.gene04562:intron | 35.0% |
| ! | TTTTCGGCAAAAGAACAAAG+AGG | + | chr3.1:47124977-47124996 | None:intergenic | 35.0% |
| !! | GATGTTTTCAAGGTTTCAGT+TGG | - | chr3.1:47126747-47126766 | MS.gene04562:CDS | 35.0% |
| !! | GCCAGTTTTCTGTGTTTTTT+TGG | - | chr3.1:47124441-47124460 | MS.gene04562:CDS | 35.0% |
| !! | GGAAAGCAAGTTTTAGCATT+TGG | - | chr3.1:47123857-47123876 | MS.gene04562:intron | 35.0% |
| !! | TTGGTGATGATACGATATGA+TGG | - | chr3.1:47124053-47124072 | MS.gene04562:intron | 35.0% |
| !! | TTTCTGCAAATTTTGGTGGT+TGG | - | chr3.1:47125361-47125380 | MS.gene04562:intron | 35.0% |
| !!! | CACATATCAGTTTTAGAGTC+CGG | + | chr3.1:47122678-47122697 | None:intergenic | 35.0% |
| !!! | TTTTACTCCTTTGGTTCTCT+AGG | - | chr3.1:47124281-47124300 | MS.gene04562:CDS | 35.0% |
| AACCTGTGAAGGAAATACCT+TGG | - | chr3.1:47124552-47124571 | MS.gene04562:intron | 40.0% | |
| ACCGCAATTCATTGGAGTAT+TGG | + | chr3.1:47123495-47123514 | None:intergenic | 40.0% | |
| ACCTGTGAAGGAAATACCTT+GGG | - | chr3.1:47124553-47124572 | MS.gene04562:intron | 40.0% | |
| ACTAGTATCAGGGACAGTAT+CGG | + | chr3.1:47124014-47124033 | None:intergenic | 40.0% | |
| AGACTGTACTAAACCTACAG+TGG | + | chr3.1:47123678-47123697 | None:intergenic | 40.0% | |
| AGGATGAGACACACAAGAAA+TGG | + | chr3.1:47125708-47125727 | None:intergenic | 40.0% | |
| ATCTAGGGGCTATATCTTGA+TGG | + | chr3.1:47126224-47126243 | None:intergenic | 40.0% | |
| ATGCAAACAGTTGGGTTTCT+TGG | - | chr3.1:47125533-47125552 | MS.gene04562:intron | 40.0% | |
| CCAAAGGAGTAAAACACTGA+TGG | + | chr3.1:47124275-47124294 | None:intergenic | 40.0% | |
| GAAATTGCCATAGTAAGCCA+TGG | + | chr3.1:47125345-47125364 | None:intergenic | 40.0% | |
| GAAGAAGAAGAAGAAGGTGA+TGG | + | chr3.1:47122152-47122171 | None:intergenic | 40.0% | |
| GAGAAGTAGATCATTAGCTC+TGG | - | chr3.1:47124175-47124194 | MS.gene04562:intron | 40.0% | |
| GATGTTAAGTCTGAGAAGCA+TGG | - | chr3.1:47122278-47122297 | MS.gene04562:intron | 40.0% | |
| GGTTTCAGTTGGGCTATATT+TGG | - | chr3.1:47126758-47126777 | MS.gene04562:CDS | 40.0% | |
| GTGAATCAGGAAAGGTGAAA+AGG | + | chr3.1:47124240-47124259 | None:intergenic | 40.0% | |
| TAGCTAACACTTCTGATGGA+AGG | + | chr3.1:47122717-47122736 | None:intergenic | 40.0% | |
| TATTTCCTTCACAGGTTCCT+TGG | + | chr3.1:47124549-47124568 | None:intergenic | 40.0% | |
| TCAACCTAAAAGGGAGACTA+AGG | + | chr3.1:47125000-47125019 | None:intergenic | 40.0% | |
| TCAGTTGGGCTATATTTGGT+TGG | - | chr3.1:47126762-47126781 | MS.gene04562:CDS | 40.0% | |
| TCATACTTACTTGATGCCTC+TGG | + | chr3.1:47122305-47122324 | None:intergenic | 40.0% | |
| TCTACCGGAATAAACAGTCA+TGG | - | chr3.1:47122968-47122987 | MS.gene04562:intron | 40.0% | |
| TCTTTCTCACCGCAATTCAT+TGG | + | chr3.1:47123503-47123522 | None:intergenic | 40.0% | |
| TGAAGTTACTGTACGCAACA+GGG | - | chr3.1:47125813-47125832 | MS.gene04562:intron | 40.0% | |
| TGAGGAACGAGAAAGTTCAA+TGG | + | chr3.1:47126139-47126158 | None:intergenic | 40.0% | |
| TGTACTAAACCTACAGTGGT+GGG | + | chr3.1:47123674-47123693 | None:intergenic | 40.0% | |
| TTAGGAAAAACTTCCCACCA+AGG | + | chr3.1:47122404-47122423 | None:intergenic | 40.0% | |
| TTCGTGAAGCTAACTTCTTC+TGG | - | chr3.1:47124086-47124105 | MS.gene04562:intron | 40.0% | |
| TTGAAGTTACTGTACGCAAC+AGG | - | chr3.1:47125812-47125831 | MS.gene04562:intron | 40.0% | |
| TTTGTCGAAACCACCAGTTT+GGG | - | chr3.1:47124583-47124602 | MS.gene04562:intron | 40.0% | |
| ! | AGATACTTGTTGCAGATTGC+TGG | - | chr3.1:47123809-47123828 | MS.gene04562:intron | 40.0% |
| ! | CACTTGATGATCCTGAAATG+CGG | - | chr3.1:47124486-47124505 | MS.gene04562:intron | 40.0% |
| ! | CCATCAGTGTTTTACTCCTT+TGG | - | chr3.1:47124272-47124291 | MS.gene04562:CDS | 40.0% |
| ! | CGTTTTACCATGGCTTACTA+TGG | - | chr3.1:47125335-47125354 | MS.gene04562:intron | 40.0% |
| ! | CTCATGGGATGATGTTTTCA+AGG | - | chr3.1:47126737-47126756 | MS.gene04562:CDS | 40.0% |
| ! | GGGAAGTTTTTCCTAAGAGA+TGG | - | chr3.1:47122408-47122427 | MS.gene04562:intron | 40.0% |
| ! | GTTGCAGAATATGAAGCATC+TGG | + | chr3.1:47126020-47126039 | None:intergenic | 40.0% |
| ! | TCAGTGCTACTGAAAATTCC+AGG | + | chr3.1:47126270-47126289 | None:intergenic | 40.0% |
| ! | TGCTACAAACGGTTTTTCCA+AGG | - | chr3.1:47124529-47124548 | MS.gene04562:intron | 40.0% |
| ! | TTTGGATGGTGATGATGTTG+AGG | - | chr3.1:47122358-47122377 | MS.gene04562:intron | 40.0% |
| ! | TTTTGTCGAAACCACCAGTT+TGG | - | chr3.1:47124582-47124601 | MS.gene04562:intron | 40.0% |
| ! | TTTTTCCAAGGAACCTGTGA+AGG | - | chr3.1:47124541-47124560 | MS.gene04562:intron | 40.0% |
| !! | AGAGAATGGATGGTGTCATA+TGG | + | chr3.1:47126702-47126721 | None:intergenic | 40.0% |
| !! | AGAGGCATCAAGTAAGTATG+AGG | - | chr3.1:47122304-47122323 | MS.gene04562:intron | 40.0% |
| !! | TCATTAGCTCTGGTATACAG+TGG | - | chr3.1:47124185-47124204 | MS.gene04562:intron | 40.0% |
| !! | TGAATGGTTGATGAGAGTTC+TGG | + | chr3.1:47122198-47122217 | None:intergenic | 40.0% |
| !!! | TGTGTTTTTTTGGGACCTGT+AGG | - | chr3.1:47124451-47124470 | MS.gene04562:CDS | 40.0% |
| AACAAGCTCTTCTCCTTGGT+GGG | - | chr3.1:47122388-47122407 | MS.gene04562:intron | 45.0% | |
| AAGGAACAAGCTCTTCTCCT+TGG | - | chr3.1:47122384-47122403 | MS.gene04562:intron | 45.0% | |
| AATCCAAGTTTGGCAGCTAC+GGG | + | chr3.1:47123917-47123936 | None:intergenic | 45.0% | |
| AATGCATCAGTTCCCTGATC+AGG | + | chr3.1:47126177-47126196 | None:intergenic | 45.0% | |
| ACAGGTTACATTCTGCAGCA+TGG | - | chr3.1:47126442-47126461 | MS.gene04562:intron | 45.0% | |
| ACCAATTCCCATGAATGCAC+GGG | + | chr3.1:47123957-47123976 | None:intergenic | 45.0% | |
| ACTAGGCTTAAGGCCCTATT+TGG | + | chr3.1:47123139-47123158 | None:intergenic | 45.0% | |
| ACTGATGCATTCTCTCAGTC+TGG | - | chr3.1:47126186-47126205 | MS.gene04562:intron | 45.0% | |
| ATCTGTTACAAGGGTTCGCA+AGG | - | chr3.1:47125413-47125432 | MS.gene04562:intron | 45.0% | |
| ATGGAAACGGAGAAGGTGAA+TGG | + | chr3.1:47122214-47122233 | None:intergenic | 45.0% | |
| ATTAGTTGCCCGTGCATTCA+TGG | - | chr3.1:47123946-47123965 | MS.gene04562:intron | 45.0% | |
| CAATCCAAGTTTGGCAGCTA+CGG | + | chr3.1:47123918-47123937 | None:intergenic | 45.0% | |
| CAATGTCAGCAGAGTACAAC+TGG | - | chr3.1:47123645-47123664 | MS.gene04562:intron | 45.0% | |
| CACCAATTCCCATGAATGCA+CGG | + | chr3.1:47123958-47123977 | None:intergenic | 45.0% | |
| CAGGTAGCTAACACTTCTGA+TGG | + | chr3.1:47122721-47122740 | None:intergenic | 45.0% | |
| CAGTTGTACTCTGCTGACAT+TGG | + | chr3.1:47123647-47123666 | None:intergenic | 45.0% | |
| CCATACTGGTGAATCAGGAA+AGG | + | chr3.1:47124248-47124267 | None:intergenic | 45.0% | |
| CCCTTGTAACAGATACACCT+CGG | + | chr3.1:47125407-47125426 | None:intergenic | 45.0% | |
| CCGAGGTGTATCTGTTACAA+GGG | - | chr3.1:47125404-47125423 | MS.gene04562:intron | 45.0% | |
| CCTGTGAAGGAAATACCTTG+GGG | - | chr3.1:47124554-47124573 | MS.gene04562:intron | 45.0% | |
| CCTTGTAACAGATACACCTC+GGG | + | chr3.1:47125406-47125425 | None:intergenic | 45.0% | |
| CCTTTCCTGATTCACCAGTA+TGG | - | chr3.1:47124245-47124264 | MS.gene04562:intron | 45.0% | |
| CGCATTTCAGGATCATCAAG+TGG | + | chr3.1:47124488-47124507 | None:intergenic | 45.0% | |
| CTAGTATCAGGGACAGTATC+GGG | + | chr3.1:47124013-47124032 | None:intergenic | 45.0% | |
| CTGTACTAAACCTACAGTGG+TGG | + | chr3.1:47123675-47123694 | None:intergenic | 45.0% | |
| GAATGAAAGTTCCCCAGTTG+TGG | + | chr3.1:47124631-47124650 | None:intergenic | 45.0% | |
| GCAAAAGTGGGACACTATCA+GGG | + | chr3.1:47124609-47124628 | None:intergenic | 45.0% | |
| GCACGGGCAACTAATAGAAA+AGG | + | chr3.1:47123941-47123960 | None:intergenic | 45.0% | |
| GCAGATTGCTGGTGGAATAT+GGG | - | chr3.1:47123820-47123839 | MS.gene04562:intron | 45.0% | |
| GCCCCTAGATATTCTGTAAG+TGG | - | chr3.1:47126234-47126253 | MS.gene04562:intron | 45.0% | |
| GCTATATTTGGTTGGAACCG+TGG | - | chr3.1:47126770-47126789 | MS.gene04562:CDS | 45.0% | |
| GTACTAAACCTACAGTGGTG+GGG | + | chr3.1:47123673-47123692 | None:intergenic | 45.0% | |
| GTATACAGTGGCATGTACCT+TGG | - | chr3.1:47124197-47124216 | MS.gene04562:intron | 45.0% | |
| TAGCATTTGGCGTCATTTGG+TGG | - | chr3.1:47123870-47123889 | MS.gene04562:intron | 45.0% | |
| TCCTGATTCACCAGTATGGA+TGG | - | chr3.1:47124249-47124268 | MS.gene04562:intron | 45.0% | |
| TCTTCTCAGGGGATATTGCT+CGG | - | chr3.1:47126370-47126389 | MS.gene04562:intron | 45.0% | |
| TGAAACCACATACCTGAGTG+AGG | + | chr3.1:47123721-47123740 | None:intergenic | 45.0% | |
| TGCAGATTGCTGGTGGAATA+TGG | - | chr3.1:47123819-47123838 | MS.gene04562:intron | 45.0% | |
| TGCATTCATGGGAATTGGTG+AGG | - | chr3.1:47123958-47123977 | MS.gene04562:intron | 45.0% | |
| TTAGTTGCCCGTGCATTCAT+GGG | - | chr3.1:47123947-47123966 | MS.gene04562:intron | 45.0% | |
| ! | GAAGAAGAAGAAGGTGATGG+TGG | + | chr3.1:47122149-47122168 | None:intergenic | 45.0% |
| ! | GGTGATGATGTTGAGGTAGA+AGG | - | chr3.1:47122365-47122384 | MS.gene04562:intron | 45.0% |
| ! | GTTGTGTATGACTTGCAGTC+AGG | - | chr3.1:47125610-47125629 | MS.gene04562:intron | 45.0% |
| ! | TACTTGTTGCAGATTGCTGG+TGG | - | chr3.1:47123812-47123831 | MS.gene04562:intron | 45.0% |
| ! | TCTGTCAAAATGGGTTCCTG+TGG | - | chr3.1:47124148-47124167 | MS.gene04562:intron | 45.0% |
| ! | TCTTTTCACCGGTCGAGAAA+AGG | + | chr3.1:47126803-47126822 | None:intergenic | 45.0% |
| ! | TGAAAGATGCACTGCTGCTT+TGG | + | chr3.1:47126644-47126663 | None:intergenic | 45.0% |
| ! | TTTTCTTCTGGCCGCATTTC+AGG | + | chr3.1:47124500-47124519 | None:intergenic | 45.0% |
| !! | ACTAAGTATGCGGTTTGGTG+TGG | - | chr3.1:47124710-47124729 | MS.gene04562:CDS | 45.0% |
| !! | CATCAGAAGTGTTAGCTACC+TGG | - | chr3.1:47122719-47122738 | MS.gene04562:CDS | 45.0% |
| !! | GGTTTGGTGTGGATGAAGTT+AGG | - | chr3.1:47124721-47124740 | MS.gene04562:CDS | 45.0% |
| !! | TTACTAGGGTGTTGCTATGC+CGG | - | chr3.1:47124112-47124131 | MS.gene04562:intron | 45.0% |
| !!! | AATTTTTTTTTTTTTTTTGA+CGG | + | chr3.1:47124945-47124964 | None:intergenic | 5.0% |
| AACCACATACCTGAGTGAGG+AGG | + | chr3.1:47123718-47123737 | None:intergenic | 50.0% | |
| AACCTGTTGCTGCTGTTCCA+AGG | + | chr3.1:47126429-47126448 | None:intergenic | 50.0% | |
| ACACTGATGGCCATCCATAC+TGG | + | chr3.1:47124262-47124281 | None:intergenic | 50.0% | |
| AGCTACGGGAGTTAGGATTG+TGG | + | chr3.1:47123903-47123922 | None:intergenic | 50.0% | |
| AGCTAGCACTCCAGCAGTAT+TGG | + | chr3.1:47126401-47126420 | None:intergenic | 50.0% | |
| AGGTGCAATGGAAACGGAGA+AGG | + | chr3.1:47122221-47122240 | None:intergenic | 50.0% | |
| ATACACAACACAGCCACCAC+AGG | + | chr3.1:47125599-47125618 | None:intergenic | 50.0% | |
| ATGTACCTTGGATCGGTCAC+TGG | - | chr3.1:47124209-47124228 | MS.gene04562:intron | 50.0% | |
| ATTTGGTTGGAACCGTGGTG+TGG | - | chr3.1:47126775-47126794 | MS.gene04562:CDS | 50.0% | |
| CACAGCAGGTGCAATGGAAA+CGG | + | chr3.1:47122227-47122246 | None:intergenic | 50.0% | |
| CAGTGGCATGTACCTTGGAT+CGG | - | chr3.1:47124202-47124221 | MS.gene04562:intron | 50.0% | |
| CCACCACAGGAGAATCAATG+TGG | + | chr3.1:47125586-47125605 | None:intergenic | 50.0% | |
| CCCGAGGTGTATCTGTTACA+AGG | - | chr3.1:47125403-47125422 | MS.gene04562:intron | 50.0% | |
| CGAGAAAAGGTTCCACACCA+CGG | + | chr3.1:47126790-47126809 | None:intergenic | 50.0% | |
| CTCGGTCTATCCAATACTGC+TGG | - | chr3.1:47126388-47126407 | MS.gene04562:intron | 50.0% | |
| GAACAAGCTCTTCTCCTTGG+TGG | - | chr3.1:47122387-47122406 | MS.gene04562:intron | 50.0% | |
| GATCTACTTCTCTCTGCCAC+AGG | + | chr3.1:47124167-47124186 | None:intergenic | 50.0% | |
| GATTGCTGGTGGAATATGGG+CGG | - | chr3.1:47123823-47123842 | MS.gene04562:intron | 50.0% | |
| GCCATCCATACTGGTGAATC+AGG | + | chr3.1:47124253-47124272 | None:intergenic | 50.0% | |
| GCGGTGAGAAAGAGAACAGA+TGG | - | chr3.1:47123510-47123529 | MS.gene04562:intron | 50.0% | |
| GGCAAAAGTGGGACACTATC+AGG | + | chr3.1:47124610-47124629 | None:intergenic | 50.0% | |
| GGGAGTTAGGATTGTGGCAA+CGG | + | chr3.1:47123897-47123916 | None:intergenic | 50.0% | |
| TAAACAGCTTCTCCTGGACC+AGG | + | chr3.1:47122866-47122885 | None:intergenic | 50.0% | |
| TACATGTCTCAGCGTCATGC+CGG | - | chr3.1:47122656-47122675 | MS.gene04562:intron | 50.0% | |
| TACCTCCTCACTCAGGTATG+TGG | - | chr3.1:47123713-47123732 | MS.gene04562:intron | 50.0% | |
| TCCCCAGTTGTGGCAAAAGT+GGG | + | chr3.1:47124621-47124640 | None:intergenic | 50.0% | |
| TTCCCCAGTTGTGGCAAAAG+TGG | + | chr3.1:47124622-47124641 | None:intergenic | 50.0% | |
| ! | AATACTGCTGGAGTGCTAGC+TGG | - | chr3.1:47126400-47126419 | MS.gene04562:intron | 50.0% |
| ! | AGAGTTCTGGTACGTGACAG+TGG | + | chr3.1:47122185-47122204 | None:intergenic | 50.0% |
| ! | CCCCAAGGTATTTCCTTCAC+AGG | + | chr3.1:47124557-47124576 | None:intergenic | 50.0% |
| ! | CTTCTGATGGAAGGTGTGTC+TGG | + | chr3.1:47122708-47122727 | None:intergenic | 50.0% |
| ! | GTGTGGAACCTTTTCTCGAC+CGG | - | chr3.1:47126792-47126811 | MS.gene04562:CDS | 50.0% |
| !! | CCACATTGATTCTCCTGTGG+TGG | - | chr3.1:47125583-47125602 | MS.gene04562:intron | 50.0% |
| !! | GAGCCACATTGATTCTCCTG+TGG | - | chr3.1:47125580-47125599 | MS.gene04562:intron | 50.0% |
| !! | GTCCCACTTTTGCCACAACT+GGG | - | chr3.1:47124616-47124635 | MS.gene04562:CDS | 50.0% |
| !! | TCCCACTTTTGCCACAACTG+GGG | - | chr3.1:47124617-47124636 | MS.gene04562:CDS | 50.0% |
| !! | TGTCCCACTTTTGCCACAAC+TGG | - | chr3.1:47124615-47124634 | MS.gene04562:CDS | 50.0% |
| AACTGGAACCCCACCACTGT+AGG | - | chr3.1:47123662-47123681 | MS.gene04562:intron | 55.0% | |
| ACACCTTCCCTCTTCCTCTC+CGG | + | chr3.1:47122253-47122272 | None:intergenic | 55.0% | |
| ACTATCAGGGCCCAAACTGG+TGG | + | chr3.1:47124596-47124615 | None:intergenic | 55.0% | |
| ACTCCCGTAGCTGCCAAACT+TGG | - | chr3.1:47123911-47123930 | MS.gene04562:intron | 55.0% | |
| CATTGCACCTGCTGTGTCAC+CGG | - | chr3.1:47122231-47122250 | MS.gene04562:intron | 55.0% | |
| CCAATCCAGTGACCGATCCA+AGG | + | chr3.1:47124217-47124236 | None:intergenic | 55.0% | |
| CCTTGGATCGGTCACTGGAT+TGG | - | chr3.1:47124214-47124233 | MS.gene04562:intron | 55.0% | |
| CTACGGATGCATCAGAGCCA+TGG | + | chr3.1:47123791-47123810 | None:intergenic | 55.0% | |
| GACACTATCAGGGCCCAAAC+TGG | + | chr3.1:47124599-47124618 | None:intergenic | 55.0% | |
| GCAGACACTCTTGTAACCCG+AGG | - | chr3.1:47125387-47125406 | MS.gene04562:intron | 55.0% | |
| GCCCGTGCATTCATGGGAAT+TGG | - | chr3.1:47123953-47123972 | MS.gene04562:intron | 55.0% | |
| GGAATATGGGCGGACACAGT+GGG | - | chr3.1:47123833-47123852 | MS.gene04562:intron | 55.0% | |
| GTCCTTGGAACAGCAGCAAC+AGG | - | chr3.1:47126424-47126443 | MS.gene04562:intron | 55.0% | |
| GTGGCGAACTATGTGCCTAC+AGG | + | chr3.1:47124469-47124488 | None:intergenic | 55.0% | |
| GTTTGGCAGCTACGGGAGTT+AGG | + | chr3.1:47123910-47123929 | None:intergenic | 55.0% | |
| TGGAATATGGGCGGACACAG+TGG | - | chr3.1:47123832-47123851 | MS.gene04562:intron | 55.0% | |
| TGTGTCACCGGAGAGGAAGA+GGG | - | chr3.1:47122243-47122262 | MS.gene04562:intron | 55.0% | |
| TTGGGGATACCTCCTCACTC+AGG | - | chr3.1:47123706-47123725 | MS.gene04562:intron | 55.0% | |
| ! | GAGAGGAAGAGGGAAGGTGT+GGG | - | chr3.1:47122253-47122272 | MS.gene04562:intron | 55.0% |
| ATATGGGCGGACACAGTGGG+AGG | - | chr3.1:47123836-47123855 | MS.gene04562:intron | 60.0% | |
| CGGTGACACAGCAGGTGCAA+TGG | + | chr3.1:47122233-47122252 | None:intergenic | 60.0% | |
| CTGTGTCACCGGAGAGGAAG+AGG | - | chr3.1:47122242-47122261 | MS.gene04562:intron | 60.0% | |
| GGAGAGGAAGAGGGAAGGTG+TGG | - | chr3.1:47122252-47122271 | MS.gene04562:intron | 60.0% | |
| TCACCGGAGAGGAAGAGGGA+AGG | - | chr3.1:47122247-47122266 | MS.gene04562:intron | 60.0% | |
| TTCCTCTCCGGTGACACAGC+AGG | + | chr3.1:47122241-47122260 | None:intergenic | 60.0% | |
| ! | GGAGTGCTAGCTGGTGTCCT+TGG | - | chr3.1:47126409-47126428 | MS.gene04562:intron | 60.0% |
| ! | GTCTGAGAAGCATGGGCCAG+AGG | - | chr3.1:47122286-47122305 | MS.gene04562:intron | 60.0% |
| CACCTGCTGTGTCACCGGAG+AGG | - | chr3.1:47122236-47122255 | MS.gene04562:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 47122113 | 47126833 | 47122113 | ID=MS.gene04562 |
| chr3.1 | mRNA | 47122113 | 47126833 | 47122113 | ID=MS.gene04562.t1;Parent=MS.gene04562 |
| chr3.1 | exon | 47126465 | 47126833 | 47126465 | ID=MS.gene04562.t1.exon1;Parent=MS.gene04562.t1 |
| chr3.1 | CDS | 47126465 | 47126833 | 47126465 | ID=cds.MS.gene04562.t1;Parent=MS.gene04562.t1 |
| chr3.1 | exon | 47125219 | 47125326 | 47125219 | ID=MS.gene04562.t1.exon2;Parent=MS.gene04562.t1 |
| chr3.1 | CDS | 47125219 | 47125326 | 47125219 | ID=cds.MS.gene04562.t1;Parent=MS.gene04562.t1 |
| chr3.1 | exon | 47124967 | 47125122 | 47124967 | ID=MS.gene04562.t1.exon3;Parent=MS.gene04562.t1 |
| chr3.1 | CDS | 47124967 | 47125122 | 47124967 | ID=cds.MS.gene04562.t1;Parent=MS.gene04562.t1 |
| chr3.1 | exon | 47124612 | 47124827 | 47124612 | ID=MS.gene04562.t1.exon4;Parent=MS.gene04562.t1 |
| chr3.1 | CDS | 47124612 | 47124827 | 47124612 | ID=cds.MS.gene04562.t1;Parent=MS.gene04562.t1 |
| chr3.1 | exon | 47124264 | 47124473 | 47124264 | ID=MS.gene04562.t1.exon5;Parent=MS.gene04562.t1 |
| chr3.1 | CDS | 47124264 | 47124473 | 47124264 | ID=cds.MS.gene04562.t1;Parent=MS.gene04562.t1 |
| chr3.1 | exon | 47123512 | 47123649 | 47123512 | ID=MS.gene04562.t1.exon6;Parent=MS.gene04562.t1 |
| chr3.1 | CDS | 47123512 | 47123649 | 47123512 | ID=cds.MS.gene04562.t1;Parent=MS.gene04562.t1 |
| chr3.1 | exon | 47123315 | 47123416 | 47123315 | ID=MS.gene04562.t1.exon7;Parent=MS.gene04562.t1 |
| chr3.1 | CDS | 47123315 | 47123416 | 47123315 | ID=cds.MS.gene04562.t1;Parent=MS.gene04562.t1 |
| chr3.1 | exon | 47122698 | 47122763 | 47122698 | ID=MS.gene04562.t1.exon8;Parent=MS.gene04562.t1 |
| chr3.1 | CDS | 47122698 | 47122763 | 47122698 | ID=cds.MS.gene04562.t1;Parent=MS.gene04562.t1 |
| chr3.1 | exon | 47122483 | 47122567 | 47122483 | ID=MS.gene04562.t1.exon9;Parent=MS.gene04562.t1 |
| chr3.1 | CDS | 47122483 | 47122567 | 47122483 | ID=cds.MS.gene04562.t1;Parent=MS.gene04562.t1 |
| chr3.1 | exon | 47122113 | 47122210 | 47122113 | ID=MS.gene04562.t1.exon10;Parent=MS.gene04562.t1 |
| chr3.1 | CDS | 47122113 | 47122210 | 47122113 | ID=cds.MS.gene04562.t1;Parent=MS.gene04562.t1 |
| Gene Sequence |
| Protein sequence |
