AlfalfaGEDB | MS.gene04648

M. sativa cultivar XinJiangDaYe / MS.gene04648

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004713 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04648.t1	XP_024625466.1	99.3	290	2	0	39	328	38	327	2.20E-162	581.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04648.t1	P93749	82.8	291	47	3	39	328	36	324	1.8e-136	486.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04648.t1	A0A396H3Y2	99.3	290	2	0	39	328	38	327	1.6e-162	581.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene006134	MS.gene04648	PPI
MS.gene009168	MS.gene04648	PPI
MS.gene027160	MS.gene04648	PPI
MS.gene027576	MS.gene04648	PPI
MS.gene046158	MS.gene04648	PPI
MS.gene052044	MS.gene04648	PPI
MS.gene065334	MS.gene04648	PPI
MS.gene30127	MS.gene04648	PPI
MS.gene31081	MS.gene04648	PPI
MS.gene43900	MS.gene04648	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04648.t1	MTR_7g093610	96.341	328	7	1	1	328	1	323	0.0	653
MS.gene04648.t1	MTR_1g054340	79.141	326	65	2	1	323	1	326	0.0	509
MS.gene04648.t1	MTR_1g116520	66.563	323	100	3	2	324	5	319	5.50e-160	451
MS.gene04648.t1	MTR_1g116520	66.563	323	100	3	2	324	46	360	5.11e-159	450
MS.gene04648.t1	MTR_1g086230	62.654	324	110	3	1	323	116	429	1.16e-144	417
MS.gene04648.t1	MTR_4g123870	68.030	269	83	1	57	325	50	315	3.45e-136	391
MS.gene04648.t1	MTR_4g123870	68.030	269	83	1	57	325	81	346	8.65e-136	391
MS.gene04648.t1	MTR_3g019120	55.477	283	98	4	41	322	160	415	8.21e-108	322
MS.gene04648.t1	MTR_3g019120	55.477	283	98	4	41	322	200	455	2.71e-107	322
MS.gene04648.t1	MTR_7g109670	46.667	285	142	5	41	322	346	623	6.35e-75	244

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04648.t1	AT2G41970	79.385	325	59	5	1	323	1	319	0.0	527
MS.gene04648.t1	AT3G59350	63.914	327	110	3	2	328	47	365	6.51e-155	439
MS.gene04648.t1	AT2G30740	62.195	328	108	5	2	325	5	320	2.78e-152	432
MS.gene04648.t1	AT2G30740	62.195	328	108	5	2	325	5	320	2.78e-152	432
MS.gene04648.t1	AT2G30740	62.195	328	108	5	2	325	5	320	2.78e-152	432
MS.gene04648.t1	AT2G30740	62.195	328	108	5	2	325	5	320	2.78e-152	432
MS.gene04648.t1	AT2G30740	62.195	328	108	5	2	325	5	320	2.78e-152	432
MS.gene04648.t1	AT2G30740	62.195	328	108	5	2	325	5	320	2.78e-152	432
MS.gene04648.t1	AT2G30740	62.195	328	108	5	2	325	5	320	2.78e-152	432
MS.gene04648.t1	AT2G30740	62.195	328	108	5	2	325	5	320	2.78e-152	432

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Find 84 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTTTATAGTTT+TGG	0.205463	7.3:-17141650	MS.gene04648:CDS
AAACCTTAGCAATTGCCTTT+GGG	0.341988	7.3:+17141363	None:intergenic
AACAGGAAACTTTGGTTCAA+AGG	0.456129	7.3:-17142847	MS.gene04648:CDS
AACCTTAGCAATTGCCTTTG+GGG	0.525433	7.3:+17141364	None:intergenic
AACTCAGCCAACGATATGGA+GGG	0.647410	7.3:+17142879	None:intergenic
AAGTCGTTGGAGTCAGAATC+AGG	0.418607	7.3:+17142729	None:intergenic
AATACGCTGCACCATCAAGA+GGG	0.602640	7.3:-17143264	MS.gene04648:CDS
AATAGATTAACAGGAAACTT+TGG	0.423697	7.3:-17142855	MS.gene04648:CDS
AATGCATATGGTGGCGGCGG+CGG	0.413682	7.3:-17143238	MS.gene04648:CDS
ACAAGACTTTGTTGCCCTTT+AGG	0.278654	7.3:+17141575	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAATATAGGCAATGATAG+AGG	-	chr7.3:17141720-17141739	MS.gene04648:intron	30.0%
ATGTGAATCTCACATAAAGT+TGG	+	chr7.3:17142297-17142316	None:intergenic	30.0%
ATTGAATAACAAGACATTGC+TGG	+	chr7.3:17142601-17142620	None:intergenic	30.0%
CTGAAGTTTAATGAGCTAAT+TGG	-	chr7.3:17143167-17143186	MS.gene04648:intron	30.0%
GCTGAGTTAAATAGATTAAC+AGG	-	chr7.3:17141819-17141838	MS.gene04648:intron	30.0%
GGTTTATCAATATGCAAGTT+TGG	-	chr7.3:17142150-17142169	MS.gene04648:CDS	30.0%
GTATTGAAGTTGCAATCAAA+AGG	-	chr7.3:17141913-17141932	MS.gene04648:intron	30.0%
TCATTGCCTATATTCATACA+AGG	+	chr7.3:17141717-17141736	None:intergenic	30.0%
TCTTTGCATGATGTATTACA+TGG	-	chr7.3:17142175-17142194	MS.gene04648:CDS	30.0%
AGGTTCCTTGATTAAAACCA+AGG	-	chr7.3:17142419-17142438	MS.gene04648:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	17141367	17143338	17141367	ID=MS.gene04648
chr7.3	mRNA	17141367	17143338	17141367	ID=MS.gene04648.t1;Parent=MS.gene04648
chr7.3	exon	17143233	17143338	17143233	ID=MS.gene04648.t1.exon1;Parent=MS.gene04648.t1
chr7.3	CDS	17143233	17143338	17143233	ID=cds.MS.gene04648.t1;Parent=MS.gene04648.t1
chr7.3	exon	17142719	17142975	17142719	ID=MS.gene04648.t1.exon2;Parent=MS.gene04648.t1
chr7.3	CDS	17142719	17142975	17142719	ID=cds.MS.gene04648.t1;Parent=MS.gene04648.t1
chr7.3	exon	17142509	17142635	17142509	ID=MS.gene04648.t1.exon3;Parent=MS.gene04648.t1
chr7.3	CDS	17142509	17142635	17142509	ID=cds.MS.gene04648.t1;Parent=MS.gene04648.t1
chr7.3	exon	17141975	17142248	17141975	ID=MS.gene04648.t1.exon4;Parent=MS.gene04648.t1
chr7.3	CDS	17141975	17142248	17141975	ID=cds.MS.gene04648.t1;Parent=MS.gene04648.t1
chr7.3	exon	17141568	17141700	17141568	ID=MS.gene04648.t1.exon5;Parent=MS.gene04648.t1
chr7.3	CDS	17141568	17141700	17141568	ID=cds.MS.gene04648.t1;Parent=MS.gene04648.t1
chr7.3	exon	17141367	17141453	17141367	ID=MS.gene04648.t1.exon6;Parent=MS.gene04648.t1
chr7.3	CDS	17141367	17141453	17141367	ID=cds.MS.gene04648.t1;Parent=MS.gene04648.t1

Gene Sequence

>MS.gene04648

ATGTTGTGTTGCGGAGGTGCAGAAGAAGATACCAGCGGTCCACCTTCAAACCAATACGCTGCACCATCAAGAGGGGGTAATGCATATGGTGGCGGCGGCGGTGGAGGTAATTAATAATCTCTTCATTTTTATCTATTCATCTTTACTTCTTTTTCTTTGTATCTAGAAGGCTTCAACCTTAGTGTTTTTGCATTTATTGCCAAAATAAGTTCTGTTTGCTTTTGGACAGTCACAGAACAATTTTAAGCCAAAGTATAAGAATTTCATTTTGCATGTGATAGCTATAGTGATTGAACGTGATCCTATATAATGTTATGAAATGATTTGAATGTGATAATTTTGAGTAGCCTTGTATGAATATAGGCAATGATAGAGGAGAGCCAAGGAGCAACATTACCAAGAGTGGTGGTCCACAGAAAGTATTACCAATTGAGATACCCTCCATATCGTTGGCTGAGTTAAATAGATTAACAGGAAACTTTGGTTCAAAGGCCTTCATTGGTGAAGGTTCGTATGGAAGGGTTTACTATGCAAAAATGAATGATGGTATTGAAGTTGCAATCAAAAGGCTGGATACAAGTTCTTCGCCTGATTCTGACTCCAACGACTTCGCTGCTCAGGTAAGAAAAAATTATTTAAAGCAGTGTTTTGGCTCTTGGTGTTGTCACTCATATTGCATTGTGTTACTATATGAATTTCGCAGTTATCAGTTGTTTCAAGACTCAAGCATGACAATTTTGTAGAGTTGACTGGATATTGTCTAGAAGCAGACAACAGAATTTTGGTTTATCAATATGCAAGTTTGGGTTCTTTGCATGATGTATTACATGGTAGGCCTATAACCATATAATTTTAATCGAGAAACACAACTTTTAACGCTCTTTCCAACACACTCCCTTTTAATAATAAAAAATCATATAGGTTTTACCAACTTTATGTGAGATTCACATGATTTGAGTAAGACACGTTTAAATTTCAATTAATAGAAGGGAGTGCTGGAAATAGTGTTACAGAATATGTTGCTAGCACTTGTTTTGTTAAGTATATAGTTCAGGTTCCTTGATTAAAACCAAGGCTTTTGCTTTTGCAGGAAGGAAGGGTGTACAAGGTGCCGAACCTGGTCCAGTTTTAAGCTGGAACCAGAGAGCGAAAATTGCATTTGGTGCGGCAAAAGGCCTAGAGTTTCTTCATGAAAAGGTTCAGCCTTCTATAGTTCACCGCGATGTTCGATCCAGCAATGTCTTGTTATTCAATGACTATGAGGCCAAGATTGCTGATTTCAGCTTGACAAATCAGTCTTCAGATACGGCAGCTCGGCTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCAGAGTATACCTTTTACTTTTACATTTACTTTTACATTTCTTTTATTTTGAGATCAAGTTATAGTGAATAATGAATTATCCTTAAAAAGGGTTGAGTTAATATATAACTTGCACTATAATTTTTCATTATACTTAACTGTCACATAACTAATCATAGCCATAATCTTATATGAAAAATGAAGAATATGGTATGCGGACATTAATAAACACTATCCTTTCTTATATTAGTTAGGTCAATATATTTTTGTTGTTTTGATAGTGATTGATTTCATCTTCAGGTATGCAATGACAGGGCAGATAACACAAAAAAGTGATGTTTATAGTTTTGGAGTTGTGCTTTTAGAACTCTTGACTGGAAGAAAGCCAGTAGACCACACAATGCCTAAAGGGCAACAAAGTCTTGTGACTTGGGTATGTTTATCCCTAATTTGTTCATTCTTCTGAAGTTTAATGAGCTAATTGGTTTGTTTTCTGTTGTATAATCTACTATTTTTCCAATGTGTTTTTTTCAATAACCTATTTCAGGCAACTCCAAGGTTGAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAGCTAAACAATGACTACCCCCCAAAGGCAATTGCTAAG

Protein sequence

>MS.gene04648.t1

MLCCGGAEEDTSGPPSNQYAAPSRGGNAYGGGGGGGNDRGEPRSNITKSGGPQKVLPIEIPSISLAELNRLTGNFGSKAFIGEGSYGRVYYAKMNDGIEVAIKRLDTSSSPDSDSNDFAAQLSVVSRLKHDNFVELTGYCLEADNRILVYQYASLGSLHDVLHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAK