Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046939.t1 | AES93571.2 | 88.1 | 622 | 24 | 2 | 2 | 573 | 5 | 626 | 1.50E-302 | 1048.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046939.t1 | Q6JDV7 | 57.9 | 622 | 195 | 9 | 8 | 573 | 16 | 626 | 1.4e-181 | 637.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046939.t1 | G7K0W3 | 88.1 | 622 | 24 | 2 | 2 | 573 | 5 | 626 | 1.1e-302 | 1048.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene046939 | MS.gene26467 | PPI |
| MS.gene059371 | MS.gene046939 | PPI |
| MS.gene059370 | MS.gene046939 | PPI |
| MS.gene047859 | MS.gene046939 | PPI |
| MS.gene26468 | MS.gene046939 | PPI |
| MS.gene059369 | MS.gene046939 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046939.t1 | MTR_5g005030 | 88.103 | 622 | 24 | 2 | 2 | 573 | 5 | 626 | 0.0 | 1109 |
| MS.gene046939.t1 | MTR_5g004960 | 33.108 | 296 | 180 | 8 | 47 | 332 | 370 | 657 | 1.14e-34 | 140 |
| MS.gene046939.t1 | MTR_5g004960 | 33.108 | 296 | 180 | 8 | 47 | 332 | 370 | 657 | 1.26e-34 | 140 |
| MS.gene046939.t1 | MTR_5g004960 | 33.108 | 296 | 180 | 8 | 47 | 332 | 370 | 657 | 2.04e-34 | 139 |
| MS.gene046939.t1 | MTR_4g094755 | 27.374 | 358 | 180 | 10 | 46 | 329 | 12 | 363 | 3.94e-25 | 110 |
| MS.gene046939.t1 | MTR_4g094755 | 27.654 | 358 | 179 | 10 | 46 | 329 | 12 | 363 | 4.82e-25 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046939.t1 | AT1G49980 | 58.689 | 610 | 185 | 9 | 8 | 561 | 16 | 614 | 0.0 | 671 |
| MS.gene046939.t1 | AT1G49980 | 58.689 | 610 | 185 | 9 | 8 | 561 | 16 | 614 | 0.0 | 671 |
| MS.gene046939.t1 | AT1G49980 | 58.689 | 610 | 185 | 9 | 8 | 561 | 16 | 614 | 0.0 | 671 |
| MS.gene046939.t1 | AT1G49980 | 58.689 | 610 | 185 | 9 | 8 | 561 | 16 | 614 | 0.0 | 671 |
| MS.gene046939.t1 | AT1G49980 | 58.689 | 610 | 185 | 9 | 8 | 561 | 16 | 614 | 0.0 | 671 |
| MS.gene046939.t1 | AT1G49980 | 58.689 | 610 | 185 | 9 | 8 | 561 | 16 | 614 | 0.0 | 671 |
| MS.gene046939.t1 | AT1G49980 | 58.689 | 610 | 185 | 9 | 8 | 561 | 16 | 614 | 0.0 | 671 |
| MS.gene046939.t1 | AT1G49980 | 59.746 | 472 | 172 | 8 | 97 | 561 | 1 | 461 | 0.0 | 528 |
| MS.gene046939.t1 | AT1G49980 | 59.746 | 472 | 172 | 8 | 97 | 561 | 1 | 461 | 0.0 | 527 |
| MS.gene046939.t1 | AT5G44750 | 29.558 | 362 | 215 | 12 | 49 | 381 | 376 | 726 | 1.63e-31 | 130 |
| MS.gene046939.t1 | AT5G44750 | 29.508 | 366 | 214 | 13 | 49 | 381 | 376 | 730 | 7.69e-31 | 129 |
| MS.gene046939.t1 | AT5G44740 | 28.134 | 359 | 178 | 10 | 45 | 329 | 11 | 363 | 3.06e-26 | 114 |
| MS.gene046939.t1 | AT5G44740 | 29.016 | 193 | 120 | 4 | 152 | 329 | 89 | 279 | 4.74e-14 | 75.5 |
| MS.gene046939.t1 | AT5G44740 | 29.016 | 193 | 120 | 4 | 152 | 329 | 106 | 296 | 7.29e-14 | 75.1 |
Find 102 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATTTCCTGACAATAATT+AGG | 0.155981 | 5.4:+433145 | None:intergenic |
| TTTATACAGGCCAGGAAATT+TGG | 0.195002 | 5.4:-436515 | MS.gene046939:intron |
| TTTAAGTAACCCTATGTTAA+AGG | 0.210169 | 5.4:-436662 | MS.gene046939:CDS |
| TACTCTGTGGGTTTAGGTTT+GGG | 0.229231 | 5.4:-434706 | MS.gene046939:CDS |
| TTCTCCTGAAGTAATGAAAT+TGG | 0.259914 | 5.4:+433644 | None:intergenic |
| CTCGCGACCTTTCAAGGATT+TGG | 0.266763 | 5.4:-436726 | MS.gene046939:CDS |
| CAGTGGATGTACAGAGGTTC+TGG | 0.277512 | 5.4:-433242 | MS.gene046939:CDS |
| TCATTTCCTGACAATAATTA+GGG | 0.281010 | 5.4:+433146 | None:intergenic |
| GGAGTTCGTTCTGCCATGCC+TGG | 0.295650 | 5.4:-436494 | MS.gene046939:CDS |
| TTTGAAGCAACTCAGCAAAA+TGG | 0.296723 | 5.4:+433032 | None:intergenic |
| ATTACCAAAGCTCCACTCTT+TGG | 0.298690 | 5.4:-433476 | MS.gene046939:CDS |
| TTACTCTGTGGGTTTAGGTT+TGG | 0.301255 | 5.4:-434707 | MS.gene046939:CDS |
| CCTGTTTCAGTACGATTAAT+AGG | 0.312775 | 5.4:-433899 | MS.gene046939:intron |
| GACGGAACAAACCTCATAAT+TGG | 0.313970 | 5.4:+436597 | None:intergenic |
| ATTACCAATTTCATTACTTC+AGG | 0.328953 | 5.4:-433648 | MS.gene046939:CDS |
| TTGATATAACTGAAGTTTGC+AGG | 0.331335 | 5.4:-436238 | MS.gene046939:CDS |
| CCTATTAATCGTACTGAAAC+AGG | 0.360995 | 5.4:+433899 | None:intergenic |
| ATTCTCCCCAAGCAAGATTT+CGG | 0.366592 | 5.4:-434675 | MS.gene046939:CDS |
| GTCAGGAAATGATAATGTTT+TGG | 0.369048 | 5.4:-433135 | MS.gene046939:CDS |
| AAGCTTCTCGCGACCTTTCA+AGG | 0.369769 | 5.4:-436732 | MS.gene046939:CDS |
| CACTAAACTGTGATACTCTA+AGG | 0.372191 | 5.4:+433712 | None:intergenic |
| GAATTTCATCGCTGGTAGTC+TGG | 0.379435 | 5.4:-436273 | MS.gene046939:CDS |
| GGTAAAATATACTGTCCATT+TGG | 0.386191 | 5.4:+435343 | None:intergenic |
| GTATACTTGTTGAAATCAAC+TGG | 0.388510 | 5.4:+436431 | None:intergenic |
| TTAAGTAACCCTATGTTAAA+GGG | 0.398161 | 5.4:-436661 | MS.gene046939:CDS |
| ATTGGCCTGCCCTTTAACAT+AGG | 0.399508 | 5.4:+436652 | None:intergenic |
| TACAGTGATTTGACCAGAAA+AGG | 0.401634 | 5.4:-436404 | MS.gene046939:intron |
| AGAACGAACTCCAAATTTCC+TGG | 0.407264 | 5.4:+436505 | None:intergenic |
| GATATCCACTGCCAATTATG+AGG | 0.408271 | 5.4:-436608 | MS.gene046939:intron |
| GATTTGGTTACATGTAGATA+TGG | 0.415193 | 5.4:-436710 | MS.gene046939:CDS |
| GAAACTGATCTTTCCCTTGA+CGG | 0.420296 | 5.4:-433561 | MS.gene046939:CDS |
| TTACTTCAGGAGAAGCCAAT+AGG | 0.428131 | 5.4:-433635 | MS.gene046939:CDS |
| AGACTACCAGCGATGAAATT+CGG | 0.430802 | 5.4:+436275 | None:intergenic |
| ATGTGAGCAGATGCTGGATA+AGG | 0.432320 | 5.4:-435065 | MS.gene046939:CDS |
| ATAACAGCCAAGCGGTCATT+TGG | 0.439647 | 5.4:+435322 | None:intergenic |
| AATCTTTCCTCAACAAAACT+TGG | 0.440500 | 5.4:+433070 | None:intergenic |
| GAGTTCGTTCTGCCATGCCT+GGG | 0.453647 | 5.4:-436493 | MS.gene046939:CDS |
| CTGGGATCAACTTCTTTCCA+AGG | 0.459075 | 5.4:-433223 | MS.gene046939:CDS |
| AACAAATGATTACCATCAAA+AGG | 0.462445 | 5.4:+433507 | None:intergenic |
| ACCGAATCGCTTACTTGCTA+AGG | 0.488096 | 5.4:-436041 | MS.gene046939:intron |
| ATGCAACAGCGCTTCATCCT+CGG | 0.489046 | 5.4:+434618 | None:intergenic |
| TGATAAAAGAATTCTTGAAC+TGG | 0.493707 | 5.4:-436755 | MS.gene046939:CDS |
| CTTTCCTCAACAAAACTTGG+AGG | 0.498930 | 5.4:+433073 | None:intergenic |
| TGTGAGCAGATGCTGGATAA+GGG | 0.498978 | 5.4:-435064 | MS.gene046939:CDS |
| TTCTTTCCAAGGGCAGTTTG+AGG | 0.499533 | 5.4:-433212 | MS.gene046939:CDS |
| TTGGCCTGCCCTTTAACATA+GGG | 0.499608 | 5.4:+436653 | None:intergenic |
| GAATAACGGGTCTAATCTCC+TGG | 0.502177 | 5.4:-433179 | MS.gene046939:CDS |
| CTCAAACAGACCTTTCTGAT+AGG | 0.502889 | 5.4:+435280 | None:intergenic |
| AAGCACATGTGAGCAGATGC+TGG | 0.504634 | 5.4:-435071 | MS.gene046939:CDS |
| CACTAGCGCGAAAGCAGGAA+TGG | 0.504927 | 5.4:-437055 | MS.gene046939:CDS |
| AACAGACCTTTCTGATAGGA+AGG | 0.506790 | 5.4:+435284 | None:intergenic |
| ATCTGTGTGCCTACCGTCAA+GGG | 0.510405 | 5.4:+433548 | None:intergenic |
| ATAGTCTTCTGTGTAAGATC+AGG | 0.514061 | 5.4:+433669 | None:intergenic |
| TGATAGCCCTAATTATTGTC+AGG | 0.515465 | 5.4:-433152 | MS.gene046939:CDS |
| TGCAAACTTCAGTTATATCA+AGG | 0.516821 | 5.4:+436240 | None:intergenic |
| ACCTTAGCAAGTAAGCGATT+CGG | 0.530222 | 5.4:+436040 | None:intergenic |
| ACTGGTCTCACATGTAGTGC+TGG | 0.531695 | 5.4:-436070 | MS.gene046939:CDS |
| CCATGCCTGGGTTTATTGCA+CGG | 0.534158 | 5.4:-436481 | MS.gene046939:CDS |
| ACTGGAACAAAGATTAACTC+TGG | 0.536947 | 5.4:+436449 | None:intergenic |
| CATGTAACCAAATCCTTGAA+AGG | 0.537054 | 5.4:+436719 | None:intergenic |
| AATTAGGGCTATCATCCTCC+AGG | 0.540562 | 5.4:+433161 | None:intergenic |
| AGTGGATGTACAGAGGTTCT+GGG | 0.544383 | 5.4:-433241 | MS.gene046939:CDS |
| TTTGAATCGGAACAGATGCT+TGG | 0.545838 | 5.4:+432990 | None:intergenic |
| GACATGGTGCCAACAGCCAT+TGG | 0.549036 | 5.4:+436634 | None:intergenic |
| AAGCATCTGTTCCGATTCAA+AGG | 0.554546 | 5.4:-432988 | MS.gene046939:CDS |
| TATGTTAAAGGGCAGGCCAA+TGG | 0.557242 | 5.4:-436650 | MS.gene046939:CDS |
| GAAAACTGATGGTGCAGAGA+AGG | 0.558906 | 5.4:-433454 | MS.gene046939:intron |
| GTAACCCTATGTTAAAGGGC+AGG | 0.561428 | 5.4:-436657 | MS.gene046939:CDS |
| GGGTTTAGGTTTGGGAAAGA+CGG | 0.563053 | 5.4:-434698 | MS.gene046939:CDS |
| TGATATAACTGAAGTTTGCA+GGG | 0.565126 | 5.4:-436237 | MS.gene046939:CDS |
| GTTTACACTAGCGCGAAAGC+AGG | 0.568256 | 5.4:-437060 | MS.gene046939:CDS |
| CTTAGAGTATCACAGTTTAG+TGG | 0.571256 | 5.4:-433711 | MS.gene046939:CDS |
| ACAAACCTCATAATTGGCAG+TGG | 0.574002 | 5.4:+436603 | None:intergenic |
| TCCACTCTTTGGAAAACTGA+TGG | 0.575363 | 5.4:-433465 | MS.gene046939:CDS |
| ATCCTCCCTTCCTATCAGAA+AGG | 0.575436 | 5.4:-435290 | MS.gene046939:intron |
| CTGATCTTTCCCTTGACGGT+AGG | 0.579399 | 5.4:-433557 | MS.gene046939:CDS |
| TGGGATCAACTTCTTTCCAA+GGG | 0.581757 | 5.4:-433222 | MS.gene046939:CDS |
| AGCGCGAAAGCAGGAATGGA+AGG | 0.585360 | 5.4:-437051 | MS.gene046939:CDS |
| TCAGACATAAACAAGCCAAA+TGG | 0.586732 | 5.4:-435358 | MS.gene046939:CDS |
| TCTCACATGTAGTGCTGGAG+TGG | 0.588105 | 5.4:-436065 | MS.gene046939:CDS |
| GATCTGTGTGCCTACCGTCA+AGG | 0.594862 | 5.4:+433547 | None:intergenic |
| AAGGGCAGGCCAATGGCTGT+TGG | 0.602052 | 5.4:-436643 | MS.gene046939:CDS |
| TATGATCCGAATTTCATCGC+TGG | 0.611918 | 5.4:-436281 | MS.gene046939:CDS |
| GACTATAAATGTTCACTCTG+TGG | 0.619008 | 5.4:-433106 | MS.gene046939:CDS |
| GACCTTTCTGATAGGAAGGG+AGG | 0.620126 | 5.4:+435288 | None:intergenic |
| GTCGGCGTTTATGAAGAGAC+TGG | 0.621129 | 5.4:-436088 | MS.gene046939:CDS |
| CCGTGCAATAAACCCAGGCA+TGG | 0.621698 | 5.4:+436481 | None:intergenic |
| AGCTTCCGTGCAATAAACCC+AGG | 0.632231 | 5.4:+436476 | None:intergenic |
| ACAGACCTTTCTGATAGGAA+GGG | 0.643641 | 5.4:+435285 | None:intergenic |
| TGGGAAGCGATGATAATCGA+TGG | 0.648696 | 5.4:-437098 | MS.gene046939:CDS |
| GGCAGTGGATATCATAGACA+TGG | 0.648981 | 5.4:+436618 | None:intergenic |
| GGAAAAGTATCAGTAATGAG+AGG | 0.653557 | 5.4:-434654 | MS.gene046939:CDS |
| ATTGCTCAAGAAATCAGAGT+CGG | 0.667415 | 5.4:-436106 | MS.gene046939:CDS |
| CAGTTTAGTGGACAAAAGTG+TGG | 0.667576 | 5.4:-433699 | MS.gene046939:CDS |
| CTGTATCAGTGACAAAGTCG+TGG | 0.672041 | 5.4:+433583 | None:intergenic |
| CAACAGCGCTTCATCCTCGG+TGG | 0.690052 | 5.4:+434621 | None:intergenic |
| TAACCACAGTGGATGTACAG+AGG | 0.705399 | 5.4:-433248 | MS.gene046939:CDS |
| TAACGGGTCTAATCTCCTGG+AGG | 0.717537 | 5.4:-433176 | MS.gene046939:CDS |
| TGAAAGTCATAACAGCCAAG+CGG | 0.719674 | 5.4:+435314 | None:intergenic |
| TGATAGTGTTGACAGATTGG+GGG | 0.759194 | 5.4:-435139 | MS.gene046939:intron |
| GAACCTCTGTACATCCACTG+TGG | 0.781808 | 5.4:+433245 | None:intergenic |
| GATGCAAGTTCTAACCACAG+TGG | 0.797600 | 5.4:-433259 | MS.gene046939:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATAACTTCTTAATTT+AGG | - | chr5.4:433259-433278 | MS.gene046939:CDS | 10.0% |
| !! | ATTAATAACTTCTTAATTTA+GGG | - | chr5.4:433260-433279 | MS.gene046939:CDS | 10.0% |
| !! | AAAATTATATAAAAGGTAAC+TGG | + | chr5.4:434358-434377 | None:intergenic | 15.0% |
| !! | ATTATGATAAGGTAAATTAT+TGG | - | chr5.4:435919-435938 | MS.gene046939:intron | 15.0% |
| !! | GGCTAAAAAAATTATATAAA+AGG | + | chr5.4:434365-434384 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAAATACCTTTTC+TGG | + | chr5.4:433696-433715 | None:intergenic | 15.0% |
| !!! | ATAATTTTCTGATTATGATA+AGG | - | chr5.4:435908-435927 | MS.gene046939:intron | 15.0% |
| !!! | TTTTTAAATGAAATACATTG+AGG | - | chr5.4:434198-434217 | MS.gene046939:intron | 15.0% |
| !! | AAATGTCATATGTTAAAAGA+AGG | + | chr5.4:435334-435353 | None:intergenic | 20.0% |
| !! | AATGTATAAGTTATCCAAAT+TGG | + | chr5.4:434426-434445 | None:intergenic | 20.0% |
| !! | ATGTATAAGTTATCCAAATT+GGG | + | chr5.4:434425-434444 | None:intergenic | 20.0% |
| !! | ATTTACTAGATAACACTAAA+AGG | - | chr5.4:434448-434467 | MS.gene046939:intron | 20.0% |
| !! | CATGATAAAATGAAAAAAAC+TGG | + | chr5.4:434281-434300 | None:intergenic | 20.0% |
| !! | GCCAGTTATTATAAAATTAT+TGG | - | chr5.4:434847-434866 | MS.gene046939:intron | 20.0% |
| !! | TCATTTATCACATTATCAAA+AGG | - | chr5.4:433197-433216 | MS.gene046939:CDS | 20.0% |
| !! | TTTACTAGATAACACTAAAA+GGG | - | chr5.4:434449-434468 | MS.gene046939:intron | 20.0% |
| !!! | AGCTTTGTGTTAAAATATAT+AGG | - | chr5.4:434485-434504 | MS.gene046939:intron | 20.0% |
| !!! | ATTTTTAAAGGGAAAAAAAG+AGG | + | chr5.4:433947-433966 | None:intergenic | 20.0% |
| !!! | CAGTTATTTTTTATCTTTCA+GGG | - | chr5.4:435512-435531 | MS.gene046939:intron | 20.0% |
| !!! | CTACATATTCCATTTTTAAA+GGG | + | chr5.4:433958-433977 | None:intergenic | 20.0% |
| !!! | GCCAATAATTTTATAATAAC+TGG | + | chr5.4:434851-434870 | None:intergenic | 20.0% |
| !!! | TCAATCACTTTTAATTAGAA+AGG | + | chr5.4:434928-434947 | None:intergenic | 20.0% |
| !!! | TCAGTTATTTTTTATCTTTC+AGG | - | chr5.4:435511-435530 | MS.gene046939:intron | 20.0% |
| !!! | TCTACATATTCCATTTTTAA+AGG | + | chr5.4:433959-433978 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTCCCTTTAAAAA+TGG | - | chr5.4:433946-433965 | MS.gene046939:CDS | 20.0% |
| !!! | TTTTTTCAGCATCATTTAAA+TGG | - | chr5.4:435108-435127 | MS.gene046939:CDS | 20.0% |
| ! | AAATACACAATCTATAGGTT+CGG | - | chr5.4:436078-436097 | MS.gene046939:CDS | 25.0% |
| ! | AACAAATGATTACCATCAAA+AGG | + | chr5.4:436580-436599 | None:intergenic | 25.0% |
| ! | AAGAGGTTTAATACATTTGA+AGG | + | chr5.4:433930-433949 | None:intergenic | 25.0% |
| ! | AATAAAAAGAAAACACCAAG+TGG | + | chr5.4:434179-434198 | None:intergenic | 25.0% |
| ! | AATTAGTAATGCGTAAACAT+TGG | + | chr5.4:436758-436777 | None:intergenic | 25.0% |
| ! | AGGAAAAAAATGTGAATAAC+GGG | - | chr5.4:436892-436911 | MS.gene046939:intron | 25.0% |
| ! | ATCATTTCCTGACAATAATT+AGG | + | chr5.4:436942-436961 | None:intergenic | 25.0% |
| ! | ATCGCTACTTAGAAAAATAA+GGG | + | chr5.4:436674-436693 | None:intergenic | 25.0% |
| ! | ATTACCAATTTCATTACTTC+AGG | - | chr5.4:436436-436455 | MS.gene046939:CDS | 25.0% |
| ! | ATTGTTTATGAAATGAGCAA+AGG | - | chr5.4:433081-433100 | MS.gene046939:CDS | 25.0% |
| ! | CTAAGAAATACACAATCTAT+AGG | - | chr5.4:436073-436092 | MS.gene046939:CDS | 25.0% |
| ! | GAGGAAAAAAATGTGAATAA+CGG | - | chr5.4:436891-436910 | MS.gene046939:intron | 25.0% |
| ! | TAAATGAAATACATTGAGGA+AGG | - | chr5.4:434202-434221 | MS.gene046939:intron | 25.0% |
| ! | TATCGCTACTTAGAAAAATA+AGG | + | chr5.4:436675-436694 | None:intergenic | 25.0% |
| ! | TCAAGCTTATAATATATCGA+CGG | + | chr5.4:433508-433527 | None:intergenic | 25.0% |
| ! | TCATTTCCTGACAATAATTA+GGG | + | chr5.4:436941-436960 | None:intergenic | 25.0% |
| ! | TGATAAAAGAATTCTTGAAC+TGG | - | chr5.4:433329-433348 | MS.gene046939:intron | 25.0% |
| ! | TGGAAAACAGAAAATCATAA+AGG | + | chr5.4:434261-434280 | None:intergenic | 25.0% |
| ! | TTAAGTAACCCTATGTTAAA+GGG | - | chr5.4:433423-433442 | MS.gene046939:intron | 25.0% |
| ! | TTACTAGATAACACTAAAAG+GGG | - | chr5.4:434450-434469 | MS.gene046939:intron | 25.0% |
| ! | TTTAAGTAACCCTATGTTAA+AGG | - | chr5.4:433422-433441 | MS.gene046939:intron | 25.0% |
| !! | AATATTTTCAGAATGAGGAA+CGG | - | chr5.4:433109-433128 | MS.gene046939:CDS | 25.0% |
| !! | AGATATACAGGTAAAAGTTT+TGG | + | chr5.4:434386-434405 | None:intergenic | 25.0% |
| !! | ATCCAAATATTTTCAGAATG+AGG | - | chr5.4:433104-433123 | MS.gene046939:CDS | 25.0% |
| !! | GTAAGTTTAGCTTCATATAA+AGG | - | chr5.4:435246-435265 | MS.gene046939:intron | 25.0% |
| !! | GTTTTTCCTTTAATTACTGA+TGG | - | chr5.4:433743-433762 | MS.gene046939:intron | 25.0% |
| !! | TATGTTTATGTCTTTGAAAG+AGG | - | chr5.4:434900-434919 | MS.gene046939:intron | 25.0% |
| !! | TGATAATGTGATAAATGAGA+GGG | + | chr5.4:433195-433214 | None:intergenic | 25.0% |
| !! | TTCCTCATTCTGAAAATATT+TGG | + | chr5.4:433109-433128 | None:intergenic | 25.0% |
| !! | TTGACAAAGAAAAAGTACAA+AGG | - | chr5.4:433058-433077 | MS.gene046939:CDS | 25.0% |
| !! | TTTTATCTTTCAGGGAATTT+CGG | - | chr5.4:435520-435539 | MS.gene046939:intron | 25.0% |
| !!! | AAAAGAACTACTTTTCCTAT+TGG | + | chr5.4:436467-436486 | None:intergenic | 25.0% |
| !!! | TATTTTTTTCTTCTCCTCTT+AGG | - | chr5.4:436349-436368 | MS.gene046939:intron | 25.0% |
| !!! | TCGTTAACTTGTTTTATTGT+TGG | - | chr5.4:436217-436236 | MS.gene046939:CDS | 25.0% |
| !!! | TGTCACTGATTTTTATATTC+TGG | - | chr5.4:433721-433740 | MS.gene046939:intron | 25.0% |
| !!! | TTAACTTGTTTTATTGTTGG+CGG | - | chr5.4:436220-436239 | MS.gene046939:CDS | 25.0% |
| !!! | TTGATAATGTGATAAATGAG+AGG | + | chr5.4:433196-433215 | None:intergenic | 25.0% |
| AAGCTACCATCAGTAATTAA+AGG | + | chr5.4:433752-433771 | None:intergenic | 30.0% | |
| AATCTTTCCTCAACAAAACT+TGG | + | chr5.4:437017-437036 | None:intergenic | 30.0% | |
| AATTATTAAGATGGTCCTCA+AGG | - | chr5.4:436244-436263 | MS.gene046939:CDS | 30.0% | |
| GATTTGCATGGTTCATTTAT+TGG | + | chr5.4:435752-435771 | None:intergenic | 30.0% | |
| GGTAAAATATACTGTCCATT+TGG | + | chr5.4:434744-434763 | None:intergenic | 30.0% | |
| GTGTCAGATTAAAATTGCAA+TGG | - | chr5.4:433901-433920 | MS.gene046939:CDS | 30.0% | |
| TCAAAAGTGAAGAAGTAAGT+TGG | - | chr5.4:433879-433898 | MS.gene046939:intron | 30.0% | |
| TGATATAACTGAAGTTTGCA+GGG | - | chr5.4:433847-433866 | MS.gene046939:intron | 30.0% | |
| TGCAAACTTCAGTTATATCA+AGG | + | chr5.4:433847-433866 | None:intergenic | 30.0% | |
| TTCTCCTGAAGTAATGAAAT+TGG | + | chr5.4:436443-436462 | None:intergenic | 30.0% | |
| TTGATATAACTGAAGTTTGC+AGG | - | chr5.4:433846-433865 | MS.gene046939:intron | 30.0% | |
| ! | ATAAGGTAAATTATTGGCCT+GGG | - | chr5.4:435925-435944 | MS.gene046939:intron | 30.0% |
| ! | ATCTCCTTTTGTCTTTATAC+AGG | - | chr5.4:433556-433575 | MS.gene046939:CDS | 30.0% |
| ! | CAGCAATCAAATGATTGTTT+TGG | - | chr5.4:436716-436735 | MS.gene046939:CDS | 30.0% |
| ! | GAATTCTTTTATCAGCAATC+TGG | + | chr5.4:433323-433342 | None:intergenic | 30.0% |
| ! | GATTTGGTTACATGTAGATA+TGG | - | chr5.4:433374-433393 | MS.gene046939:intron | 30.0% |
| ! | GTATACTTGTTGAAATCAAC+TGG | + | chr5.4:433656-433675 | None:intergenic | 30.0% |
| ! | TGTTGTTGATTGAGATATAC+AGG | + | chr5.4:434398-434417 | None:intergenic | 30.0% |
| !! | ATTGATAGTGTTGACAGATT+GGG | - | chr5.4:434943-434962 | MS.gene046939:intron | 30.0% |
| !! | CGTATTTTGAAGGAAGTTTT+TGG | - | chr5.4:434987-435006 | MS.gene046939:intron | 30.0% |
| !! | GTCAGGAAATGATAATGTTT+TGG | - | chr5.4:436949-436968 | MS.gene046939:intron | 30.0% |
| !!! | GCAGATTTTTTTTACTCTGT+GGG | - | chr5.4:435366-435385 | MS.gene046939:CDS | 30.0% |
| !!! | GGAAATGATAATGTTTTGGT+TGG | - | chr5.4:436953-436972 | MS.gene046939:intron | 30.0% |
| !!! | TGCAGATTTTTTTTACTCTG+TGG | - | chr5.4:435365-435384 | MS.gene046939:CDS | 30.0% |
| !!! | TTTTTTTACTCTGTGGGTTT+AGG | - | chr5.4:435372-435391 | MS.gene046939:intron | 30.0% |
| AAAAGGTAACTGGCACAATT+AGG | + | chr5.4:434348-434367 | None:intergenic | 35.0% | |
| AAATTCTGTCTTCCACTTTC+TGG | - | chr5.4:435196-435215 | MS.gene046939:intron | 35.0% | |
| ACCACATACAATGCAAAACA+AGG | + | chr5.4:434527-434546 | None:intergenic | 35.0% | |
| ACCCATATGGGAAATATGTT+TGG | + | chr5.4:434085-434104 | None:intergenic | 35.0% | |
| ACTAGCAAATGTAACCCATA+TGG | + | chr5.4:434098-434117 | None:intergenic | 35.0% | |
| ACTGGAACAAAGATTAACTC+TGG | + | chr5.4:433638-433657 | None:intergenic | 35.0% | |
| AGAAAAATAAGGGTGGAGAA+TGG | + | chr5.4:436664-436683 | None:intergenic | 35.0% | |
| AGCGCTGTTGCATAAAAAAT+TGG | - | chr5.4:435476-435495 | MS.gene046939:intron | 35.0% | |
| ATAACACTAAAAGGGGTGAT+TGG | - | chr5.4:434457-434476 | MS.gene046939:intron | 35.0% | |
| ATAGTCTTCTGTGTAAGATC+AGG | + | chr5.4:436418-436437 | None:intergenic | 35.0% | |
| ATTGCAGTTCATCAGTTTGA+AGG | - | chr5.4:435574-435593 | MS.gene046939:intron | 35.0% | |
| ATTGCTCAAGAAATCAGAGT+CGG | - | chr5.4:433978-433997 | MS.gene046939:CDS | 35.0% | |
| CACTAAACTGTGATACTCTA+AGG | + | chr5.4:436375-436394 | None:intergenic | 35.0% | |
| CATGTAACCAAATCCTTGAA+AGG | + | chr5.4:433368-433387 | None:intergenic | 35.0% | |
| CCTATTAATCGTACTGAAAC+AGG | + | chr5.4:436188-436207 | None:intergenic | 35.0% | |
| CCTGTTTCAGTACGATTAAT+AGG | - | chr5.4:436185-436204 | MS.gene046939:intron | 35.0% | |
| CTAGCAAATGTAACCCATAT+GGG | + | chr5.4:434097-434116 | None:intergenic | 35.0% | |
| CTGCAAACATAAGATTTGCA+TGG | + | chr5.4:435764-435783 | None:intergenic | 35.0% | |
| CTTACAAACATGCCAAATAC+TGG | + | chr5.4:435231-435250 | None:intergenic | 35.0% | |
| GAGATGTTAAGAGAGAATTG+AGG | + | chr5.4:434326-434345 | None:intergenic | 35.0% | |
| GATAAGGTAAATTATTGGCC+TGG | - | chr5.4:435924-435943 | MS.gene046939:intron | 35.0% | |
| GCCAAACATATTTCCCATAT+GGG | - | chr5.4:434081-434100 | MS.gene046939:intron | 35.0% | |
| GCGCTGTTGCATAAAAAATT+GGG | - | chr5.4:435477-435496 | MS.gene046939:intron | 35.0% | |
| GCTACTTAGAAAAATAAGGG+TGG | + | chr5.4:436671-436690 | None:intergenic | 35.0% | |
| GTCTCAGATTTAGTCAGTTT+AGG | - | chr5.4:435623-435642 | MS.gene046939:intron | 35.0% | |
| TAACACTAAAAGGGGTGATT+GGG | - | chr5.4:434458-434477 | MS.gene046939:intron | 35.0% | |
| TACAGTGATTTGACCAGAAA+AGG | - | chr5.4:433680-433699 | MS.gene046939:CDS | 35.0% | |
| TAGCACTTGCAAGAGAAATA+TGG | + | chr5.4:436056-436075 | None:intergenic | 35.0% | |
| TAGTGATTGTTTGATCACCT+GGG | - | chr5.4:434649-434668 | MS.gene046939:CDS | 35.0% | |
| TCAACAACAGTTACCCAATT+TGG | - | chr5.4:434409-434428 | MS.gene046939:intron | 35.0% | |
| TCAGACATAAACAAGCCAAA+TGG | - | chr5.4:434726-434745 | MS.gene046939:intron | 35.0% | |
| TCATAGTATGAAATTTCCCC+AGG | + | chr5.4:434669-434688 | None:intergenic | 35.0% | |
| TGATAGCCCTAATTATTGTC+AGG | - | chr5.4:436932-436951 | MS.gene046939:intron | 35.0% | |
| TGCAAATCTTATGTTTGCAG+CGG | - | chr5.4:435764-435783 | MS.gene046939:intron | 35.0% | |
| TGCCAAACATATTTCCCATA+TGG | - | chr5.4:434080-434099 | MS.gene046939:intron | 35.0% | |
| TGGTTTCTACAACCAGTATT+TGG | - | chr5.4:435216-435235 | MS.gene046939:intron | 35.0% | |
| TTATGTCTGAGCAAACCTAT+AGG | + | chr5.4:434716-434735 | None:intergenic | 35.0% | |
| TTTATACAGGCCAGGAAATT+TGG | - | chr5.4:433569-433588 | MS.gene046939:CDS | 35.0% | |
| ! | ACTGAAAACTGCTTCTTTTG+AGG | - | chr5.4:435854-435873 | MS.gene046939:intron | 35.0% |
| ! | ACTTTTCCGAAATCTTGCTT+GGG | + | chr5.4:435418-435437 | None:intergenic | 35.0% |
| ! | ATCATAAAGGTTTTGCTTCC+TGG | + | chr5.4:434248-434267 | None:intergenic | 35.0% |
| ! | CTTAGAGTATCACAGTTTAG+TGG | - | chr5.4:436373-436392 | MS.gene046939:intron | 35.0% |
| ! | TAATGAAGCTTTATCCACAG+AGG | + | chr5.4:435953-435972 | None:intergenic | 35.0% |
| ! | TACTTTTCCGAAATCTTGCT+TGG | + | chr5.4:435419-435438 | None:intergenic | 35.0% |
| ! | TATTTTACCAAATGACCGCT+TGG | - | chr5.4:434755-434774 | MS.gene046939:intron | 35.0% |
| ! | TGTATGAACATTAGTCTAGC+TGG | + | chr5.4:435134-435153 | None:intergenic | 35.0% |
| ! | TTGACATTTTGCTCTCCTAT+AGG | - | chr5.4:434698-434717 | MS.gene046939:CDS | 35.0% |
| ! | TTTGAAGCAACTCAGCAAAA+TGG | + | chr5.4:437055-437074 | None:intergenic | 35.0% |
| ! | TTTTGCTGAGTTGCTTCAAA+AGG | - | chr5.4:437055-437074 | MS.gene046939:CDS | 35.0% |
| !! | ATGATTTGTTCAAGTCCCTT+GGG | - | chr5.4:435990-436009 | MS.gene046939:intron | 35.0% |
| !! | GATTGATAGTGTTGACAGAT+TGG | - | chr5.4:434942-434961 | MS.gene046939:intron | 35.0% |
| !! | GGAAAAGTATCAGTAATGAG+AGG | - | chr5.4:435430-435449 | MS.gene046939:intron | 35.0% |
| !! | GGTTACTGAACGTATTTTGA+AGG | - | chr5.4:434977-434996 | MS.gene046939:intron | 35.0% |
| !! | TATGATTTGTTCAAGTCCCT+TGG | - | chr5.4:435989-436008 | MS.gene046939:intron | 35.0% |
| !! | TTGATAGTGTTGACAGATTG+GGG | - | chr5.4:434944-434963 | MS.gene046939:intron | 35.0% |
| !!! | ATGATTGTTTTGGCTGATTG+AGG | - | chr5.4:436726-436745 | MS.gene046939:CDS | 35.0% |
| !!! | CATGTTCGTTAGTTTTTCAG+AGG | - | chr5.4:433780-433799 | MS.gene046939:intron | 35.0% |
| !!! | TCCTTGTTTTGCATTGTATG+TGG | - | chr5.4:434523-434542 | MS.gene046939:intron | 35.0% |
| AACAGACCTTTCTGATAGGA+AGG | + | chr5.4:434803-434822 | None:intergenic | 40.0% | |
| AAGCATCTGTTCCGATTCAA+AGG | - | chr5.4:437096-437115 | MS.gene046939:CDS | 40.0% | |
| ACAAACCTCATAATTGGCAG+TGG | + | chr5.4:433484-433503 | None:intergenic | 40.0% | |
| ACAGACCTTTCTGATAGGAA+GGG | + | chr5.4:434802-434821 | None:intergenic | 40.0% | |
| ACCTTAGCAAGTAAGCGATT+CGG | + | chr5.4:434047-434066 | None:intergenic | 40.0% | |
| AGAAAGTCACTGTTGCAACT+AGG | + | chr5.4:434880-434899 | None:intergenic | 40.0% | |
| AGAACGAACTCCAAATTTCC+TGG | + | chr5.4:433582-433601 | None:intergenic | 40.0% | |
| AGACTACCAGCGATGAAATT+CGG | + | chr5.4:433812-433831 | None:intergenic | 40.0% | |
| AGTGATTGTTTGATCACCTG+GGG | - | chr5.4:434650-434669 | MS.gene046939:CDS | 40.0% | |
| ATCCACAGACATGCAAAAAG+AGG | - | chr5.4:435803-435822 | MS.gene046939:intron | 40.0% | |
| ATTACCAAAGCTCCACTCTT+TGG | - | chr5.4:436608-436627 | MS.gene046939:intron | 40.0% | |
| ATTCTCCCCAAGCAAGATTT+CGG | - | chr5.4:435409-435428 | MS.gene046939:intron | 40.0% | |
| CAACCTGATAAATACAGCAG+AGG | + | chr5.4:436788-436807 | None:intergenic | 40.0% | |
| CAGCAAGAACCCTCTTATAT+TGG | + | chr5.4:436270-436289 | None:intergenic | 40.0% | |
| CATGTGTTCCTTGTCTAAGT+TGG | - | chr5.4:436315-436334 | MS.gene046939:intron | 40.0% | |
| CTCAAACAGACCTTTCTGAT+AGG | + | chr5.4:434807-434826 | None:intergenic | 40.0% | |
| CTCTGCTGTATTTATCAGGT+TGG | - | chr5.4:436786-436805 | MS.gene046939:intron | 40.0% | |
| CTGGCCTGTATAAAGACAAA+AGG | + | chr5.4:433563-433582 | None:intergenic | 40.0% | |
| CTTTCCTCAACAAAACTTGG+AGG | + | chr5.4:437014-437033 | None:intergenic | 40.0% | |
| GAAACTGATCTTTCCCTTGA+CGG | - | chr5.4:436523-436542 | MS.gene046939:intron | 40.0% | |
| GACGGAACAAACCTCATAAT+TGG | + | chr5.4:433490-433509 | None:intergenic | 40.0% | |
| GATATCCACTGCCAATTATG+AGG | - | chr5.4:433476-433495 | MS.gene046939:CDS | 40.0% | |
| GTAGTGATTGTTTGATCACC+TGG | - | chr5.4:434648-434667 | MS.gene046939:CDS | 40.0% | |
| GTTATGCACCAACTTAGACA+AGG | + | chr5.4:436326-436345 | None:intergenic | 40.0% | |
| GTTGGCGGCAATTATTAAGA+TGG | - | chr5.4:436235-436254 | MS.gene046939:CDS | 40.0% | |
| TATGATCCGAATTTCATCGC+TGG | - | chr5.4:433803-433822 | MS.gene046939:intron | 40.0% | |
| TCCACAGACATGCAAAAAGA+GGG | - | chr5.4:435804-435823 | MS.gene046939:intron | 40.0% | |
| TCCTCAAGGCCAATATAAGA+GGG | - | chr5.4:436258-436277 | MS.gene046939:CDS | 40.0% | |
| TGAAAGTCATAACAGCCAAG+CGG | + | chr5.4:434773-434792 | None:intergenic | 40.0% | |
| TGGGATCAACTTCTTTCCAA+GGG | - | chr5.4:436862-436881 | MS.gene046939:intron | 40.0% | |
| TGGTTGTAGAAACCAGAAAG+TGG | + | chr5.4:435211-435230 | None:intergenic | 40.0% | |
| TGTCCTCTGCTGTATTTATC+AGG | - | chr5.4:436782-436801 | MS.gene046939:intron | 40.0% | |
| TTACTTCAGGAGAAGCCAAT+AGG | - | chr5.4:436449-436468 | MS.gene046939:CDS | 40.0% | |
| TTTGAATCGGAACAGATGCT+TGG | + | chr5.4:437097-437116 | None:intergenic | 40.0% | |
| ! | ACCATCAGTTTTCCAAAGAG+TGG | + | chr5.4:436623-436642 | None:intergenic | 40.0% |
| ! | CAGTTTAGTGGACAAAAGTG+TGG | - | chr5.4:436385-436404 | MS.gene046939:intron | 40.0% |
| ! | CTTTTCCGAAATCTTGCTTG+GGG | + | chr5.4:435417-435436 | None:intergenic | 40.0% |
| ! | CTTTTGTCTTTATACAGGCC+AGG | - | chr5.4:433561-433580 | MS.gene046939:CDS | 40.0% |
| ! | GATAGCAGAGATCCTTTTGA+TGG | - | chr5.4:436565-436584 | MS.gene046939:intron | 40.0% |
| ! | TACTCTGTGGGTTTAGGTTT+GGG | - | chr5.4:435378-435397 | MS.gene046939:intron | 40.0% |
| ! | TCCACTCTTTGGAAAACTGA+TGG | - | chr5.4:436619-436638 | MS.gene046939:CDS | 40.0% |
| ! | TTACTCTGTGGGTTTAGGTT+TGG | - | chr5.4:435377-435396 | MS.gene046939:intron | 40.0% |
| ! | TTTTCCAAAGAGTGGAGCTT+TGG | + | chr5.4:436615-436634 | None:intergenic | 40.0% |
| !! | TGATAGTGTTGACAGATTGG+GGG | - | chr5.4:434945-434964 | MS.gene046939:intron | 40.0% |
| !! | TGATTTGTTCAAGTCCCTTG+GGG | - | chr5.4:435991-436010 | MS.gene046939:intron | 40.0% |
| !! | TGCAGTTTGTTACACATGCA+TGG | - | chr5.4:435647-435666 | MS.gene046939:intron | 40.0% |
| !!! | ACTTCCTCCAAGTTTTGTTG+AGG | - | chr5.4:437007-437026 | MS.gene046939:intron | 40.0% |
| !!! | CTTTTTTCTCAGTCAACAGC+AGG | - | chr5.4:435059-435078 | MS.gene046939:CDS | 40.0% |
| !!! | TTTTTTCCTCAAACTGCCCT+TGG | + | chr5.4:436881-436900 | None:intergenic | 40.0% |
| AAGTAACGCACGTGGATGTA+AGG | + | chr5.4:434147-434166 | None:intergenic | 45.0% | |
| AATTAGGGCTATCATCCTCC+AGG | + | chr5.4:436926-436945 | None:intergenic | 45.0% | |
| ACATGACACATATCCCCCAA+GGG | + | chr5.4:436008-436027 | None:intergenic | 45.0% | |
| ACTGCACTTGCACATTAACC+AGG | - | chr5.4:434227-434246 | MS.gene046939:intron | 45.0% | |
| AGTGGATGTACAGAGGTTCT+GGG | - | chr5.4:436843-436862 | MS.gene046939:intron | 45.0% | |
| ATAACAGCCAAGCGGTCATT+TGG | + | chr5.4:434765-434784 | None:intergenic | 45.0% | |
| ATCCTCCCTTCCTATCAGAA+AGG | - | chr5.4:434794-434813 | MS.gene046939:intron | 45.0% | |
| ATGCAAAAAGAGGGTCTGCA+TGG | - | chr5.4:435813-435832 | MS.gene046939:intron | 45.0% | |
| ATGTGAGCAGATGCTGGATA+AGG | - | chr5.4:435019-435038 | MS.gene046939:intron | 45.0% | |
| CTGGGATCAACTTCTTTCCA+AGG | - | chr5.4:436861-436880 | MS.gene046939:intron | 45.0% | |
| CTGTATCAGTGACAAAGTCG+TGG | + | chr5.4:436504-436523 | None:intergenic | 45.0% | |
| GAATTTCATCGCTGGTAGTC+TGG | - | chr5.4:433811-433830 | MS.gene046939:intron | 45.0% | |
| GGCAGTGGATATCATAGACA+TGG | + | chr5.4:433469-433488 | None:intergenic | 45.0% | |
| GTAACCCTATGTTAAAGGGC+AGG | - | chr5.4:433427-433446 | MS.gene046939:intron | 45.0% | |
| GTCCTCAAGGCCAATATAAG+AGG | - | chr5.4:436257-436276 | MS.gene046939:CDS | 45.0% | |
| TAACCACAGTGGATGTACAG+AGG | - | chr5.4:436836-436855 | MS.gene046939:intron | 45.0% | |
| TATGTTAAAGGGCAGGCCAA+TGG | - | chr5.4:433434-433453 | MS.gene046939:intron | 45.0% | |
| TGCAAAAAGAGGGTCTGCAT+GGG | - | chr5.4:435814-435833 | MS.gene046939:intron | 45.0% | |
| TGGGAAGCGATGATAATCGA+TGG | - | chr5.4:432986-433005 | MS.gene046939:CDS | 45.0% | |
| TGTGAGCAGATGCTGGATAA+GGG | - | chr5.4:435020-435039 | MS.gene046939:intron | 45.0% | |
| TTCTTTCCAAGGGCAGTTTG+AGG | - | chr5.4:436872-436891 | MS.gene046939:intron | 45.0% | |
| TTGGCCTGCCCTTTAACATA+GGG | + | chr5.4:433434-433453 | None:intergenic | 45.0% | |
| ! | ACCCTCTTTTTGCATGTCTG+TGG | + | chr5.4:435808-435827 | None:intergenic | 45.0% |
| ! | ACCGAATCGCTTACTTGCTA+AGG | - | chr5.4:434043-434062 | MS.gene046939:intron | 45.0% |
| ! | ATTGGCCTGCCCTTTAACAT+AGG | + | chr5.4:433435-433454 | None:intergenic | 45.0% |
| ! | GAAAACTGATGGTGCAGAGA+AGG | - | chr5.4:436630-436649 | MS.gene046939:CDS | 45.0% |
| ! | GATGCAAGTTCTAACCACAG+TGG | - | chr5.4:436825-436844 | MS.gene046939:intron | 45.0% |
| ! | GATTTGTTCAAGTCCCTTGG+GGG | - | chr5.4:435992-436011 | MS.gene046939:intron | 45.0% |
| ! | GGGTTTAGGTTTGGGAAAGA+CGG | - | chr5.4:435386-435405 | MS.gene046939:intron | 45.0% |
| !! | ACCCTCTTATATTGGCCTTG+AGG | + | chr5.4:436262-436281 | None:intergenic | 45.0% |
| !! | GAATAACGGGTCTAATCTCC+TGG | - | chr5.4:436905-436924 | MS.gene046939:intron | 45.0% |
| !! | GTGATACTCTAAGGCCTAAG+AGG | + | chr5.4:436366-436385 | None:intergenic | 45.0% |
| AAAACACCAAGTGGCAAGCG+TGG | + | chr5.4:434170-434189 | None:intergenic | 50.0% | |
| AAGCACATGTGAGCAGATGC+TGG | - | chr5.4:435013-435032 | MS.gene046939:intron | 50.0% | |
| AAGCTTCTCGCGACCTTTCA+AGG | - | chr5.4:433352-433371 | MS.gene046939:intron | 50.0% | |
| AGCTTCCGTGCAATAAACCC+AGG | + | chr5.4:433611-433630 | None:intergenic | 50.0% | |
| ATCTGTGTGCCTACCGTCAA+GGG | + | chr5.4:436539-436558 | None:intergenic | 50.0% | |
| ATGCAACAGCGCTTCATCCT+CGG | + | chr5.4:435469-435488 | None:intergenic | 50.0% | |
| CACATGACACATATCCCCCA+AGG | + | chr5.4:436009-436028 | None:intergenic | 50.0% | |
| CAGTGGATGTACAGAGGTTC+TGG | - | chr5.4:436842-436861 | MS.gene046939:intron | 50.0% | |
| CCATGCCTGGGTTTATTGCA+CGG | - | chr5.4:433603-433622 | MS.gene046939:CDS | 50.0% | |
| CTCGCGACCTTTCAAGGATT+TGG | - | chr5.4:433358-433377 | MS.gene046939:intron | 50.0% | |
| CTGATCTTTCCCTTGACGGT+AGG | - | chr5.4:436527-436546 | MS.gene046939:intron | 50.0% | |
| CTTGGGGGATATGTGTCATG+TGG | - | chr5.4:436007-436026 | MS.gene046939:intron | 50.0% | |
| GAACCTCTGTACATCCACTG+TGG | + | chr5.4:436842-436861 | None:intergenic | 50.0% | |
| GACCTTTCTGATAGGAAGGG+AGG | + | chr5.4:434799-434818 | None:intergenic | 50.0% | |
| GTCGGCGTTTATGAAGAGAC+TGG | - | chr5.4:433996-434015 | MS.gene046939:intron | 50.0% | |
| GTTTACACTAGCGCGAAAGC+AGG | - | chr5.4:433024-433043 | MS.gene046939:CDS | 50.0% | |
| TTACTTCCACGCTTGCCACT+TGG | - | chr5.4:434161-434180 | MS.gene046939:intron | 50.0% | |
| ! | ACTGGTCTCACATGTAGTGC+TGG | - | chr5.4:434014-434033 | MS.gene046939:intron | 50.0% |
| ! | TAACGGGTCTAATCTCCTGG+AGG | - | chr5.4:436908-436927 | MS.gene046939:intron | 50.0% |
| ! | TCTCACATGTAGTGCTGGAG+TGG | - | chr5.4:434019-434038 | MS.gene046939:intron | 50.0% |
| ! | TGTTGACAGATTGGGGGCAT+CGG | - | chr5.4:434951-434970 | MS.gene046939:intron | 50.0% |
| !! | CTTTATCCACAGAGGTACCC+AGG | + | chr5.4:435945-435964 | None:intergenic | 50.0% |
| AAGCGTGGAAGTAACGCACG+TGG | + | chr5.4:434155-434174 | None:intergenic | 55.0% | |
| AGCGCGAAAGCAGGAATGGA+AGG | - | chr5.4:433033-433052 | MS.gene046939:CDS | 55.0% | |
| CACTAGCGCGAAAGCAGGAA+TGG | - | chr5.4:433029-433048 | MS.gene046939:CDS | 55.0% | |
| CCGTGCAATAAACCCAGGCA+TGG | + | chr5.4:433606-433625 | None:intergenic | 55.0% | |
| GAGTTCGTTCTGCCATGCCT+GGG | - | chr5.4:433591-433610 | MS.gene046939:CDS | 55.0% | |
| GATCTGTGTGCCTACCGTCA+AGG | + | chr5.4:436540-436559 | None:intergenic | 55.0% | |
| ! | GACATGGTGCCAACAGCCAT+TGG | + | chr5.4:433453-433472 | None:intergenic | 55.0% |
| ! | TATTGGCCTGGGTACCTCTG+TGG | - | chr5.4:435936-435955 | MS.gene046939:intron | 55.0% |
| !! | ACAGATTGGGGGCATCGGTA+AGG | - | chr5.4:434956-434975 | MS.gene046939:intron | 55.0% |
| AAGGGCAGGCCAATGGCTGT+TGG | - | chr5.4:433441-433460 | MS.gene046939:intron | 60.0% | |
| CAACAGCGCTTCATCCTCGG+TGG | + | chr5.4:435466-435485 | None:intergenic | 60.0% | |
| GGAGTTCGTTCTGCCATGCC+TGG | - | chr5.4:433590-433609 | MS.gene046939:CDS | 60.0% | |
| ! | GAGGACGTTTTCTGCCACCG+AGG | - | chr5.4:435449-435468 | MS.gene046939:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 432985 | 437121 | 432985 | ID=MS.gene046939 |
| chr5.4 | mRNA | 432985 | 437121 | 432985 | ID=MS.gene046939.t1;Parent=MS.gene046939 |
| chr5.4 | exon | 437035 | 437121 | 437035 | ID=MS.gene046939.t1.exon1;Parent=MS.gene046939.t1 |
| chr5.4 | CDS | 437035 | 437121 | 437035 | ID=cds.MS.gene046939.t1;Parent=MS.gene046939.t1 |
| chr5.4 | exon | 436609 | 436782 | 436609 | ID=MS.gene046939.t1.exon2;Parent=MS.gene046939.t1 |
| chr5.4 | CDS | 436609 | 436782 | 436609 | ID=cds.MS.gene046939.t1;Parent=MS.gene046939.t1 |
| chr5.4 | exon | 436405 | 436528 | 436405 | ID=MS.gene046939.t1.exon3;Parent=MS.gene046939.t1 |
| chr5.4 | CDS | 436405 | 436528 | 436405 | ID=cds.MS.gene046939.t1;Parent=MS.gene046939.t1 |
| chr5.4 | exon | 436214 | 436314 | 436214 | ID=MS.gene046939.t1.exon4;Parent=MS.gene046939.t1 |
| chr5.4 | CDS | 436214 | 436314 | 436214 | ID=cds.MS.gene046939.t1;Parent=MS.gene046939.t1 |
| chr5.4 | exon | 436042 | 436128 | 436042 | ID=MS.gene046939.t1.exon5;Parent=MS.gene046939.t1 |
| chr5.4 | CDS | 436042 | 436128 | 436042 | ID=cds.MS.gene046939.t1;Parent=MS.gene046939.t1 |
| chr5.4 | exon | 435291 | 435386 | 435291 | ID=MS.gene046939.t1.exon6;Parent=MS.gene046939.t1 |
| chr5.4 | CDS | 435291 | 435386 | 435291 | ID=cds.MS.gene046939.t1;Parent=MS.gene046939.t1 |
| chr5.4 | exon | 435026 | 435146 | 435026 | ID=MS.gene046939.t1.exon7;Parent=MS.gene046939.t1 |
| chr5.4 | CDS | 435026 | 435146 | 435026 | ID=cds.MS.gene046939.t1;Parent=MS.gene046939.t1 |
| chr5.4 | exon | 434608 | 434736 | 434608 | ID=MS.gene046939.t1.exon8;Parent=MS.gene046939.t1 |
| chr5.4 | CDS | 434608 | 434736 | 434608 | ID=cds.MS.gene046939.t1;Parent=MS.gene046939.t1 |
| chr5.4 | exon | 434231 | 434322 | 434231 | ID=MS.gene046939.t1.exon9;Parent=MS.gene046939.t1 |
| chr5.4 | CDS | 434231 | 434322 | 434231 | ID=cds.MS.gene046939.t1;Parent=MS.gene046939.t1 |
| chr5.4 | exon | 433900 | 434011 | 433900 | ID=MS.gene046939.t1.exon10;Parent=MS.gene046939.t1 |
| chr5.4 | CDS | 433900 | 434011 | 433900 | ID=cds.MS.gene046939.t1;Parent=MS.gene046939.t1 |
| chr5.4 | exon | 433455 | 433735 | 433455 | ID=MS.gene046939.t1.exon11;Parent=MS.gene046939.t1 |
| chr5.4 | CDS | 433455 | 433735 | 433455 | ID=cds.MS.gene046939.t1;Parent=MS.gene046939.t1 |
| chr5.4 | exon | 432985 | 433302 | 432985 | ID=MS.gene046939.t1.exon12;Parent=MS.gene046939.t1 |
| chr5.4 | CDS | 432985 | 433302 | 432985 | ID=cds.MS.gene046939.t1;Parent=MS.gene046939.t1 |
| Gene Sequence |
| Protein sequence |
