Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046957.t1 | XP_013453291.1 | 93.3 | 432 | 22 | 5 | 1 | 427 | 1 | 430 | 1.60E-224 | 788.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046957.t1 | Q9LT72 | 52.8 | 436 | 175 | 7 | 16 | 427 | 41 | 469 | 7.8e-116 | 418.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046957.t1 | G7ZV99 | 93.3 | 432 | 22 | 5 | 1 | 427 | 1 | 430 | 1.1e-224 | 788.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene046957 | MS.gene34495 | PPI |
| MS.gene046957 | MS.gene006293 | PPI |
| MS.gene046957 | MS.gene41434 | PPI |
| MS.gene046957 | MS.gene49091 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046957.t1 | MTR_5g004910 | 92.824 | 432 | 24 | 5 | 1 | 427 | 1 | 430 | 0.0 | 786 |
| MS.gene046957.t1 | MTR_5g004910 | 84.954 | 432 | 18 | 5 | 1 | 427 | 1 | 390 | 0.0 | 721 |
| MS.gene046957.t1 | MTR_7g029385 | 36.667 | 450 | 257 | 9 | 3 | 427 | 85 | 531 | 1.98e-86 | 273 |
| MS.gene046957.t1 | MTR_1g095580 | 31.278 | 227 | 138 | 10 | 137 | 352 | 97 | 316 | 1.39e-13 | 72.0 |
| MS.gene046957.t1 | MTR_1g095580 | 33.495 | 206 | 117 | 11 | 137 | 329 | 97 | 295 | 2.88e-13 | 70.9 |
| MS.gene046957.t1 | MTR_1g095580 | 33.495 | 206 | 117 | 11 | 137 | 329 | 97 | 295 | 3.48e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046957.t1 | AT3G19440 | 53.089 | 437 | 172 | 9 | 16 | 427 | 41 | 469 | 1.59e-140 | 410 |
| MS.gene046957.t1 | AT3G19440 | 51.325 | 302 | 121 | 6 | 16 | 292 | 41 | 341 | 2.16e-92 | 282 |
| MS.gene046957.t1 | AT1G78910 | 41.667 | 348 | 193 | 4 | 89 | 427 | 20 | 366 | 1.15e-91 | 281 |
| MS.gene046957.t1 | AT1G78910 | 40.054 | 372 | 213 | 4 | 65 | 427 | 105 | 475 | 2.22e-90 | 282 |
| MS.gene046957.t1 | AT1G76050 | 28.761 | 226 | 109 | 8 | 137 | 327 | 150 | 358 | 4.83e-13 | 70.9 |
Find 107 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCCTGCACTGGCATTCC+AGG | 0.237756 | 5.4:+264126 | None:intergenic |
| TTGCAGTGCTTGAGATATAT+TGG | 0.249374 | 5.4:+262158 | None:intergenic |
| TGCTCCCCTTATTCAAATTA+AGG | 0.275216 | 5.4:+262232 | None:intergenic |
| GTGTTAGGTACACCGATAAT+TGG | 0.277960 | 5.4:-262363 | MS.gene046957:CDS |
| AATTTGTTGTTTAACAGAAT+TGG | 0.308662 | 5.4:+264257 | None:intergenic |
| CTTCGACCCCTGCCCTGAAA+TGG | 0.310329 | 5.4:-264434 | MS.gene046957:CDS |
| AAGGAAGAGGCACTCCCTTT+TGG | 0.322488 | 5.4:-262255 | MS.gene046957:CDS |
| GAAGTGAGAGATTCATGTTT+GGG | 0.323404 | 5.4:+264219 | None:intergenic |
| AACGAAAGAGTTTATGGATA+AGG | 0.324360 | 5.4:+264379 | None:intergenic |
| CGGTATTGGGCATTGGTTCT+TGG | 0.326843 | 5.4:-263801 | MS.gene046957:CDS |
| ACGAAAGAGTTTATGGATAA+GGG | 0.341077 | 5.4:+264380 | None:intergenic |
| ATTTGTTGTTTAACAGAATT+GGG | 0.355318 | 5.4:+264258 | None:intergenic |
| TTTGGCCTTAATTTGAATAA+GGG | 0.361194 | 5.4:-262237 | MS.gene046957:CDS |
| TGTTAGGTACACCGATAATT+GGG | 0.365218 | 5.4:-262362 | MS.gene046957:CDS |
| ATGCCCAATACCGTCTTTGT+AGG | 0.365936 | 5.4:+263811 | None:intergenic |
| TGCAGTGCTTGAGATATATT+GGG | 0.367867 | 5.4:+262159 | None:intergenic |
| AATCCTACAAAGACGGTATT+GGG | 0.380224 | 5.4:-263814 | MS.gene046957:CDS |
| TAAACTCTTTCGTTTAAAAC+AGG | 0.386798 | 5.4:-264370 | MS.gene046957:CDS |
| TGGGAGCGGAAGATGGAAAA+TGG | 0.387078 | 5.4:-264509 | MS.gene046957:CDS |
| AGAAGTGAGAGATTCATGTT+TGG | 0.393607 | 5.4:+264218 | None:intergenic |
| AACATGATAACAAGTTCAAA+AGG | 0.395586 | 5.4:-264326 | MS.gene046957:CDS |
| ATAATTGGGGACTACAAGTA+TGG | 0.402405 | 5.4:-262348 | MS.gene046957:CDS |
| CTTGGATGTCCTAGACGTTC+AGG | 0.404141 | 5.4:-263783 | MS.gene046957:CDS |
| ACAGTTTGATTTGTCTAATC+CGG | 0.412494 | 5.4:-262301 | MS.gene046957:CDS |
| AACATCGTATAACCCATTTC+AGG | 0.413289 | 5.4:+264421 | None:intergenic |
| GAATCCTACAAAGACGGTAT+TGG | 0.413483 | 5.4:-263815 | MS.gene046957:CDS |
| GTCATCTTCGGCGGTGGGAG+CGG | 0.414515 | 5.4:-264523 | MS.gene046957:CDS |
| TGTTATCATGTTGTTGTTGT+GGG | 0.414635 | 5.4:+264337 | None:intergenic |
| TACTTGTAGTCCCCAATTAT+CGG | 0.434618 | 5.4:+262351 | None:intergenic |
| AGACTAGACAGAGATTGTTC+TGG | 0.437828 | 5.4:-264021 | MS.gene046957:CDS |
| CGGAGTCATTAATGCTCCAC+TGG | 0.441021 | 5.4:-263760 | MS.gene046957:CDS |
| ACCTCCTGGAATGCCAGTGC+AGG | 0.441859 | 5.4:-264130 | MS.gene046957:CDS |
| TTCGACCCCTGCCCTGAAAT+GGG | 0.457533 | 5.4:-264433 | MS.gene046957:CDS |
| TTGTTATCATGTTGTTGTTG+TGG | 0.457895 | 5.4:+264336 | None:intergenic |
| TCAGTTGTCATCTTCGGCGG+TGG | 0.461851 | 5.4:-264529 | MS.gene046957:CDS |
| CATTAATGCTCCACTGGGTA+AGG | 0.462981 | 5.4:-263754 | MS.gene046957:intron |
| TCGGAGCCGCCGTGAGATCA+TGG | 0.463090 | 5.4:-264563 | MS.gene046957:CDS |
| ATATTAATGCCACCCTGCAC+TGG | 0.469485 | 5.4:+264117 | None:intergenic |
| TTGGAGCTTTCCCCTTTAAC+CGG | 0.469543 | 5.4:-262540 | MS.gene046957:CDS |
| CCTGAGTTCAAAGTATCCTT+AGG | 0.470817 | 5.4:+264297 | None:intergenic |
| TTATTCAAATTAAGGCCAAA+AGG | 0.471079 | 5.4:+262240 | None:intergenic |
| CGTATAACCCATTTCAGGGC+AGG | 0.484818 | 5.4:+264426 | None:intergenic |
| TGTTCTTCAGTTGAGTCCTC+CGG | 0.485992 | 5.4:+262282 | None:intergenic |
| TCGGCGGTGGGAGCGGAAGA+TGG | 0.491571 | 5.4:-264516 | MS.gene046957:CDS |
| AGTAGTTGAATCACTTGAGC+TGG | 0.493399 | 5.4:-262097 | MS.gene046957:CDS |
| ATCTCACGGCGGCTCCGACT+CGG | 0.498702 | 5.4:+264568 | None:intergenic |
| TCGTCGTCAGTTGTCATCTT+CGG | 0.501141 | 5.4:-264535 | MS.gene046957:CDS |
| CTTGTTCTAAACAAACCTCC+TGG | 0.510763 | 5.4:-264144 | MS.gene046957:CDS |
| TATTCAAATTAAGGCCAAAA+GGG | 0.513142 | 5.4:+262241 | None:intergenic |
| ACAAAGACGGTATTGGGCAT+TGG | 0.515751 | 5.4:-263808 | MS.gene046957:CDS |
| GTTCAAAAGGGTTACACCTA+AGG | 0.516651 | 5.4:-264313 | MS.gene046957:CDS |
| TTACTCTCAACCTCCTCGAT+TGG | 0.520303 | 5.4:-264049 | MS.gene046957:CDS |
| CTCAACTGAAGAACATCTCA+AGG | 0.534627 | 5.4:-262274 | MS.gene046957:CDS |
| TTGTTCTGGAATTCTTGTCA+TGG | 0.537926 | 5.4:-264007 | MS.gene046957:CDS |
| TGTTCTGGAATTCTTGTCAT+GGG | 0.542629 | 5.4:-264006 | MS.gene046957:CDS |
| AACATCAAGGGCTTCAAATG+AGG | 0.542967 | 5.4:-263935 | MS.gene046957:intron |
| TTGGCCTTAATTTGAATAAG+GGG | 0.543687 | 5.4:-262236 | MS.gene046957:CDS |
| TGAATCACTTGAGCTGGAAG+CGG | 0.546029 | 5.4:-262091 | MS.gene046957:CDS |
| CCCTGCACTGGCATTCCAGG+AGG | 0.555262 | 5.4:+264129 | None:intergenic |
| CAGTTGTCATCTTCGGCGGT+GGG | 0.555838 | 5.4:-264528 | MS.gene046957:CDS |
| ACATCGTATAACCCATTTCA+GGG | 0.562278 | 5.4:+264422 | None:intergenic |
| CCTAAGGATACTTTGAACTC+AGG | 0.564942 | 5.4:-264297 | MS.gene046957:CDS |
| GTCCACTGTGCTGAAGTGTT+AGG | 0.564993 | 5.4:-262378 | MS.gene046957:CDS |
| TGATGCAGGTTATACATGGT+TGG | 0.566674 | 5.4:-262559 | MS.gene046957:intron |
| TGAAGAACATCTCAAGGAAG+AGG | 0.572591 | 5.4:-262268 | MS.gene046957:CDS |
| ACATGATAACAAGTTCAAAA+GGG | 0.572750 | 5.4:-264325 | MS.gene046957:CDS |
| GACGGCAAGCTCATAAGAAG+TGG | 0.573583 | 5.4:-262326 | MS.gene046957:CDS |
| GTATAACCCATTTCAGGGCA+GGG | 0.573844 | 5.4:+264427 | None:intergenic |
| TCGAAGTCGAAGAGGTCACT+TGG | 0.576852 | 5.4:+264451 | None:intergenic |
| ATGACTCCGCCTGAACGTCT+AGG | 0.583378 | 5.4:+263774 | None:intergenic |
| AGGGTGGCATTAATATCAAA+CGG | 0.584548 | 5.4:-264110 | MS.gene046957:CDS |
| TATAACCCATTTCAGGGCAG+GGG | 0.588867 | 5.4:+264428 | None:intergenic |
| GTGATTTCATCATCGTCTCA+AGG | 0.589230 | 5.4:-263258 | MS.gene046957:intron |
| GTGAGAGATTCATGTTTGGG+GGG | 0.599286 | 5.4:+264222 | None:intergenic |
| TTGTTTAGAACAAGAATGTG+AGG | 0.599711 | 5.4:+264153 | None:intergenic |
| AGTGAGAGATTCATGTTTGG+GGG | 0.602687 | 5.4:+264221 | None:intergenic |
| ACACTTCAGCACAGTGGACA+CGG | 0.608556 | 5.4:+262382 | None:intergenic |
| ACGGCAAGCTCATAAGAAGT+GGG | 0.609384 | 5.4:-262325 | MS.gene046957:CDS |
| AAGTGAGAGATTCATGTTTG+GGG | 0.615302 | 5.4:+264220 | None:intergenic |
| CCTCCTGGAATGCCAGTGCA+GGG | 0.615398 | 5.4:-264129 | MS.gene046957:CDS |
| GTTTGATTTGTCTAATCCGG+AGG | 0.618245 | 5.4:-262298 | MS.gene046957:CDS |
| AAAAGAGAATCCTACAAAGA+CGG | 0.625860 | 5.4:-263821 | MS.gene046957:CDS |
| TTTCAGGTCGTGGTTGACAA+CGG | 0.626018 | 5.4:-263354 | MS.gene046957:intron |
| TTTAAATAAATAGAATGACA+CGG | 0.627054 | 5.4:-263844 | MS.gene046957:intron |
| TTTACAGTAGTAGTACTCAC+AGG | 0.632848 | 5.4:+264474 | None:intergenic |
| TTGGGGACTACAAGTATGGA+CGG | 0.637760 | 5.4:-262344 | MS.gene046957:CDS |
| GGCAGGGGTCGAAGTCGAAG+AGG | 0.644349 | 5.4:+264443 | None:intergenic |
| GTTAGGTACACCGATAATTG+GGG | 0.648978 | 5.4:-262361 | MS.gene046957:CDS |
| TCTAGTCTATGCACCAATCG+AGG | 0.653983 | 5.4:+264036 | None:intergenic |
| ACAAGTATGTATGTCCGAGT+CGG | 0.658753 | 5.4:-264582 | None:intergenic |
| GGAGTCATTAATGCTCCACT+GGG | 0.666010 | 5.4:-263759 | MS.gene046957:CDS |
| GTAATGATGCAGGTTATACA+TGG | 0.670336 | 5.4:-262563 | MS.gene046957:intron |
| GGATGTCCTAGACGTTCAGG+CGG | 0.673625 | 5.4:-263780 | MS.gene046957:CDS |
| TTTAACCGGTAGAAAACACC+AGG | 0.674752 | 5.4:-262526 | MS.gene046957:intron |
| TCGTCAGTTGTCATCTTCGG+CGG | 0.676738 | 5.4:-264532 | MS.gene046957:CDS |
| GAAGATGGAATGCAAAAGTG+CGG | 0.677074 | 5.4:+263966 | None:intergenic |
| ACGACGACTCCATGATCTCA+CGG | 0.680735 | 5.4:+264554 | None:intergenic |
| CGGCAAGCTCATAAGAAGTG+GGG | 0.688690 | 5.4:-262324 | MS.gene046957:CDS |
| GAGACGATGATGAAATCACT+CGG | 0.700343 | 5.4:+263262 | None:intergenic |
| CCTGGAATGCCAGTGCAGGG+TGG | 0.701700 | 5.4:-264126 | MS.gene046957:CDS |
| CAAGTGATTCAACTACTGAG+AGG | 0.710001 | 5.4:+262103 | None:intergenic |
| TACCTAACACTTCAGCACAG+TGG | 0.710893 | 5.4:+262376 | None:intergenic |
| AGTCTATGCACCAATCGAGG+AGG | 0.720434 | 5.4:+264039 | None:intergenic |
| ATGGATACAACCTTACCCAG+TGG | 0.725015 | 5.4:+263744 | None:intergenic |
| ACAGTAGTAGTACTCACAGG+TGG | 0.735705 | 5.4:+264477 | None:intergenic |
| TTGCAATGAAGATGTAATCG+AGG | 0.736658 | 5.4:+262195 | None:intergenic |
| ACGACTCCATGATCTCACGG+CGG | 0.860711 | 5.4:+264557 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAATAAATAGAATGACA+CGG | - | chr5.4:262776-262795 | MS.gene046957:intron | 15.0% |
| !!! | TTTAAACTTATCTTTAGTTT+TGG | - | chr5.4:263545-263564 | MS.gene046957:intron | 15.0% |
| !! | AACAATCAGAATAGAAATTA+TGG | + | chr5.4:264200-264219 | None:intergenic | 20.0% |
| !! | ACAATCAGAATAGAAATTAT+GGG | + | chr5.4:264199-264218 | None:intergenic | 20.0% |
| !! | TAATAAAGATTAAGCCTTTA+CGG | + | chr5.4:263154-263173 | None:intergenic | 20.0% |
| !! | TAGGATTTAACAAGATAATT+AGG | + | chr5.4:262997-263016 | None:intergenic | 20.0% |
| !!! | AATTTGTTGTTTAACAGAAT+TGG | + | chr5.4:262366-262385 | None:intergenic | 20.0% |
| !!! | ATTTGTTGTTTAACAGAATT+GGG | + | chr5.4:262365-262384 | None:intergenic | 20.0% |
| !!! | CTTCAATTTAATTTCATGTT+TGG | - | chr5.4:263821-263840 | MS.gene046957:CDS | 20.0% |
| !!! | TCACAAATTTTCCATATTTT+AGG | + | chr5.4:263941-263960 | None:intergenic | 20.0% |
| ! | AAAACTAAACATAACAAAGG+GGG | + | chr5.4:263980-263999 | None:intergenic | 25.0% |
| ! | AAATGTTTGAGCCTAAAATA+TGG | - | chr5.4:263927-263946 | MS.gene046957:intron | 25.0% |
| ! | AACATGATAACAAGTTCAAA+AGG | - | chr5.4:262294-262313 | MS.gene046957:CDS | 25.0% |
| ! | AACATTGTGATTTAACTGAA+AGG | + | chr5.4:262920-262939 | None:intergenic | 25.0% |
| ! | ACAACATTATTGACAATATG+AGG | + | chr5.4:263227-263246 | None:intergenic | 25.0% |
| ! | ACATGATAACAAGTTCAAAA+GGG | - | chr5.4:262295-262314 | MS.gene046957:CDS | 25.0% |
| ! | AGCAATAAAGATAATTTGAG+AGG | + | chr5.4:263571-263590 | None:intergenic | 25.0% |
| ! | AGGAAAACTAAACATAACAA+AGG | + | chr5.4:263983-264002 | None:intergenic | 25.0% |
| ! | CAATCAGAATAGAAATTATG+GGG | + | chr5.4:264198-264217 | None:intergenic | 25.0% |
| ! | GAAAACTAAACATAACAAAG+GGG | + | chr5.4:263981-264000 | None:intergenic | 25.0% |
| ! | GGAAAACTAAACATAACAAA+GGG | + | chr5.4:263982-264001 | None:intergenic | 25.0% |
| ! | TAAGTCACCTTAAAATTTAG+AGG | - | chr5.4:263418-263437 | MS.gene046957:intron | 25.0% |
| ! | TATTCAAATTAAGGCCAAAA+GGG | + | chr5.4:264382-264401 | None:intergenic | 25.0% |
| ! | TTATTCAAATTAAGGCCAAA+AGG | + | chr5.4:264383-264402 | None:intergenic | 25.0% |
| !! | ACATCAACCTCTAAATTTTA+AGG | + | chr5.4:263428-263447 | None:intergenic | 25.0% |
| !! | TAAACTCTTTCGTTTAAAAC+AGG | - | chr5.4:262250-262269 | MS.gene046957:CDS | 25.0% |
| !! | TAAATCACAATGTTTTGCAA+TGG | - | chr5.4:262926-262945 | MS.gene046957:intron | 25.0% |
| !! | TTTTGTAAACTCAACTAGTT+TGG | + | chr5.4:263703-263722 | None:intergenic | 25.0% |
| !!! | AATGGTTCTTTATTTTCTCT+TGG | - | chr5.4:262944-262963 | MS.gene046957:intron | 25.0% |
| !!! | GGAAAATAGAATTTTAGTCT+GGG | - | chr5.4:263842-263861 | MS.gene046957:intron | 25.0% |
| !!! | GTTTTAAACGAAAGAGTTTA+TGG | + | chr5.4:262250-262269 | None:intergenic | 25.0% |
| !!! | TGGAAAATAGAATTTTAGTC+TGG | - | chr5.4:263841-263860 | MS.gene046957:intron | 25.0% |
| !!! | TTTGGCCTTAATTTGAATAA+GGG | - | chr5.4:264383-264402 | MS.gene046957:CDS | 25.0% |
| !!! | TTTTGGCCTTAATTTGAATA+AGG | - | chr5.4:264382-264401 | MS.gene046957:CDS | 25.0% |
| AAAAGAGAATCCTACAAAGA+CGG | - | chr5.4:262799-262818 | MS.gene046957:intron | 30.0% | |
| AAACTAAACATAACAAAGGG+GGG | + | chr5.4:263979-263998 | None:intergenic | 30.0% | |
| AACGAAAGAGTTTATGGATA+AGG | + | chr5.4:262244-262263 | None:intergenic | 30.0% | |
| AAGGAAACATAGGGTAAAAT+AGG | + | chr5.4:263016-263035 | None:intergenic | 30.0% | |
| ACGAAAGAGTTTATGGATAA+GGG | + | chr5.4:262243-262262 | None:intergenic | 30.0% | |
| CTGAAACCAAATCAAATGAA+GGG | + | chr5.4:263252-263271 | None:intergenic | 30.0% | |
| GAAACTAATGTAAAGCAGAA+AGG | + | chr5.4:263035-263054 | None:intergenic | 30.0% | |
| TAAAGCAGAAAGGAAACATA+GGG | + | chr5.4:263025-263044 | None:intergenic | 30.0% | |
| TGTTGTGATAGAAATCATGT+AGG | + | chr5.4:263896-263915 | None:intergenic | 30.0% | |
| TTCACATCATCACATGTTAT+TGG | - | chr5.4:263752-263771 | MS.gene046957:intron | 30.0% | |
| TTGTAACCCTTCATTTGATT+TGG | - | chr5.4:263243-263262 | MS.gene046957:intron | 30.0% | |
| TTGTATCCATATTCTCAACT+TGG | - | chr5.4:262889-262908 | MS.gene046957:intron | 30.0% | |
| ! | AGTTTATGGATAAGGGTTTT+AGG | + | chr5.4:262236-262255 | None:intergenic | 30.0% |
| ! | TGAACTTGTGTTTTATAGCA+CGG | - | chr5.4:263473-263492 | MS.gene046957:intron | 30.0% |
| ! | TGTTATCATGTTGTTGTTGT+GGG | + | chr5.4:262286-262305 | None:intergenic | 30.0% |
| ! | TTGTTATCATGTTGTTGTTG+TGG | + | chr5.4:262287-262306 | None:intergenic | 30.0% |
| ! | TTGTTTAGAACAAGAATGTG+AGG | + | chr5.4:262470-262489 | None:intergenic | 30.0% |
| !! | ACAGTTTGATTTGTCTAATC+CGG | - | chr5.4:264319-264338 | MS.gene046957:CDS | 30.0% |
| !! | TTGGCCTTAATTTGAATAAG+GGG | - | chr5.4:264384-264403 | MS.gene046957:CDS | 30.0% |
| !!! | AGCATGCATTTTTTGCATTT+CGG | + | chr5.4:263679-263698 | None:intergenic | 30.0% |
| AACACCAGGTAATAGAAACA+AGG | - | chr5.4:264108-264127 | MS.gene046957:CDS | 35.0% | |
| AACATCGTATAACCCATTTC+AGG | + | chr5.4:262202-262221 | None:intergenic | 35.0% | |
| AAGTGAGAGATTCATGTTTG+GGG | + | chr5.4:262403-262422 | None:intergenic | 35.0% | |
| AATCCTACAAAGACGGTATT+GGG | - | chr5.4:262806-262825 | MS.gene046957:intron | 35.0% | |
| AATTAAGATCTCCCTCCTTA+TGG | - | chr5.4:263648-263667 | MS.gene046957:intron | 35.0% | |
| ACACCAGGTAATAGAAACAA+GGG | - | chr5.4:264109-264128 | MS.gene046957:CDS | 35.0% | |
| ACATCGTATAACCCATTTCA+GGG | + | chr5.4:262201-262220 | None:intergenic | 35.0% | |
| AGAAGTGAGAGATTCATGTT+TGG | + | chr5.4:262405-262424 | None:intergenic | 35.0% | |
| AGGCTCAAACATTTGCAATT+AGG | + | chr5.4:263921-263940 | None:intergenic | 35.0% | |
| AGGGTGGCATTAATATCAAA+CGG | - | chr5.4:262510-262529 | MS.gene046957:intron | 35.0% | |
| ATAATTGGGGACTACAAGTA+TGG | - | chr5.4:264272-264291 | MS.gene046957:CDS | 35.0% | |
| ATACATGAAAAAGAGTTGGG+AGG | - | chr5.4:264562-264581 | MS.gene046957:CDS | 35.0% | |
| ATTTCGGTAATTCCATAAGG+AGG | + | chr5.4:263663-263682 | None:intergenic | 35.0% | |
| CAATATGCAATAGTCCGTAA+AGG | - | chr5.4:263137-263156 | MS.gene046957:intron | 35.0% | |
| CCCATACATGAAAAAGAGTT+GGG | - | chr5.4:264559-264578 | MS.gene046957:CDS | 35.0% | |
| CCTGAAACCAAATCAAATGA+AGG | + | chr5.4:263253-263272 | None:intergenic | 35.0% | |
| CTTCCGTGAAAAAACATCAA+GGG | - | chr5.4:262673-262692 | MS.gene046957:intron | 35.0% | |
| GAAGTGAGAGATTCATGTTT+GGG | + | chr5.4:262404-262423 | None:intergenic | 35.0% | |
| GCACAAGTAATTAAACCGAT+AGG | - | chr5.4:263864-263883 | MS.gene046957:intron | 35.0% | |
| GTAAAGCAGAAAGGAAACAT+AGG | + | chr5.4:263026-263045 | None:intergenic | 35.0% | |
| GTAATGATGCAGGTTATACA+TGG | - | chr5.4:264057-264076 | MS.gene046957:CDS | 35.0% | |
| TACTTGTAGTCCCCAATTAT+CGG | + | chr5.4:264272-264291 | None:intergenic | 35.0% | |
| TATTGCATATTGCAGCTGTA+AGG | + | chr5.4:263129-263148 | None:intergenic | 35.0% | |
| TCTATTCTGATTGTTTGTGC+TGG | - | chr5.4:264205-264224 | MS.gene046957:CDS | 35.0% | |
| TCTCCTTTGATCTTCTTAGT+TGG | - | chr5.4:264013-264032 | MS.gene046957:CDS | 35.0% | |
| TCTTCCGTGAAAAAACATCA+AGG | - | chr5.4:262672-262691 | MS.gene046957:intron | 35.0% | |
| TGCAGTGCTTGAGATATATT+GGG | + | chr5.4:264464-264483 | None:intergenic | 35.0% | |
| TGCATTTCGGTAATTCCATA+AGG | + | chr5.4:263666-263685 | None:intergenic | 35.0% | |
| TGCTCCCCTTATTCAAATTA+AGG | + | chr5.4:264391-264410 | None:intergenic | 35.0% | |
| TGTTAGGTACACCGATAATT+GGG | - | chr5.4:264258-264277 | MS.gene046957:CDS | 35.0% | |
| TTGCAATGAAGATGTAATCG+AGG | + | chr5.4:264428-264447 | None:intergenic | 35.0% | |
| TTGCAGTGCTTGAGATATAT+TGG | + | chr5.4:264465-264484 | None:intergenic | 35.0% | |
| TTGCCAACTAAGAAGATCAA+AGG | + | chr5.4:264019-264038 | None:intergenic | 35.0% | |
| TTTACAGTAGTAGTACTCAC+AGG | + | chr5.4:262149-262168 | None:intergenic | 35.0% | |
| TTTCGGTAATTCCATAAGGA+GGG | + | chr5.4:263662-263681 | None:intergenic | 35.0% | |
| ! | ACATTAGTTTCCATAGTGTG+TGG | - | chr5.4:263044-263063 | MS.gene046957:intron | 35.0% |
| ! | GACAATATGAGGAGCTTTTA+TGG | + | chr5.4:263216-263235 | None:intergenic | 35.0% |
| ! | GATTAGCCAAGTTGAGAATA+TGG | + | chr5.4:262898-262917 | None:intergenic | 35.0% |
| ! | TATTACCTGGTGTTTTCTAC+CGG | + | chr5.4:264102-264121 | None:intergenic | 35.0% |
| !! | CAACTCTTTTTCATGTATGG+GGG | + | chr5.4:264560-264579 | None:intergenic | 35.0% |
| !! | CCAACTCTTTTTCATGTATG+GGG | + | chr5.4:264561-264580 | None:intergenic | 35.0% |
| !! | CCCAACTCTTTTTCATGTAT+GGG | + | chr5.4:264562-264581 | None:intergenic | 35.0% |
| !! | CCTTCATTTGATTTGGTTTC+AGG | - | chr5.4:263250-263269 | MS.gene046957:intron | 35.0% |
| !! | TCCCAACTCTTTTTCATGTA+TGG | + | chr5.4:264563-264582 | None:intergenic | 35.0% |
| !! | TGTTCTGGAATTCTTGTCAT+GGG | - | chr5.4:262614-262633 | MS.gene046957:intron | 35.0% |
| !! | TTGTTCTGGAATTCTTGTCA+TGG | - | chr5.4:262613-262632 | MS.gene046957:intron | 35.0% |
| !!! | AAGCCCTTGATGTTTTTTCA+CGG | + | chr5.4:262679-262698 | None:intergenic | 35.0% |
| !!! | ATAAGGGTTTTAGGTAGTTG+AGG | + | chr5.4:262227-262246 | None:intergenic | 35.0% |
| !!! | TAAGGGTTTTAGGTAGTTGA+GGG | + | chr5.4:262226-262245 | None:intergenic | 35.0% |
| !!! | TGATGTTTTTTCACGGAAGA+TGG | + | chr5.4:262672-262691 | None:intergenic | 35.0% |
| AACATCAAGGGCTTCAAATG+AGG | - | chr5.4:262685-262704 | MS.gene046957:intron | 40.0% | |
| AATGTCACAGACACTGCAAA+AGG | + | chr5.4:263526-263545 | None:intergenic | 40.0% | |
| AGACTAGACAGAGATTGTTC+TGG | - | chr5.4:262599-262618 | MS.gene046957:intron | 40.0% | |
| AGTAGTTGAATCACTTGAGC+TGG | - | chr5.4:264523-264542 | MS.gene046957:CDS | 40.0% | |
| AGTGAGAGATTCATGTTTGG+GGG | + | chr5.4:262402-262421 | None:intergenic | 40.0% | |
| ATGTCACAGACACTGCAAAA+GGG | + | chr5.4:263525-263544 | None:intergenic | 40.0% | |
| CAAGTGATTCAACTACTGAG+AGG | + | chr5.4:264520-264539 | None:intergenic | 40.0% | |
| CCCCATACATGAAAAAGAGT+TGG | - | chr5.4:264558-264577 | MS.gene046957:CDS | 40.0% | |
| CCTAAGGATACTTTGAACTC+AGG | - | chr5.4:262323-262342 | MS.gene046957:CDS | 40.0% | |
| CGAGCTGATAGCTACATAAA+AGG | - | chr5.4:263793-263812 | MS.gene046957:CDS | 40.0% | |
| CTCAACTGAAGAACATCTCA+AGG | - | chr5.4:264346-264365 | MS.gene046957:CDS | 40.0% | |
| CTGATAGCTACATAAAAGGC+AGG | - | chr5.4:263797-263816 | MS.gene046957:CDS | 40.0% | |
| GAAGATGGAATGCAAAAGTG+CGG | + | chr5.4:262657-262676 | None:intergenic | 40.0% | |
| GAATCATTACCAGCTGATCT+TGG | - | chr5.4:264134-264153 | MS.gene046957:CDS | 40.0% | |
| GAATCCTACAAAGACGGTAT+TGG | - | chr5.4:262805-262824 | MS.gene046957:intron | 40.0% | |
| GAGACGATGATGAAATCACT+CGG | + | chr5.4:263361-263380 | None:intergenic | 40.0% | |
| GTGATTTCATCATCGTCTCA+AGG | - | chr5.4:263362-263381 | MS.gene046957:intron | 40.0% | |
| GTGTTAGGTACACCGATAAT+TGG | - | chr5.4:264257-264276 | MS.gene046957:CDS | 40.0% | |
| GTTAGGTACACCGATAATTG+GGG | - | chr5.4:264259-264278 | MS.gene046957:CDS | 40.0% | |
| GTTCAAAAGGGTTACACCTA+AGG | - | chr5.4:262307-262326 | MS.gene046957:CDS | 40.0% | |
| TAAACATAACAAAGGGGGGA+GGG | + | chr5.4:263975-263994 | None:intergenic | 40.0% | |
| TCATGTAGGACATCACCTAT+CGG | + | chr5.4:263882-263901 | None:intergenic | 40.0% | |
| TCATTACCAGTGACATGAGT+CGG | + | chr5.4:264044-264063 | None:intergenic | 40.0% | |
| TGAAGAACATCTCAAGGAAG+AGG | - | chr5.4:264352-264371 | MS.gene046957:CDS | 40.0% | |
| TGATGCAGGTTATACATGGT+TGG | - | chr5.4:264061-264080 | MS.gene046957:CDS | 40.0% | |
| TGGCAATCATTGTGTATACG+AGG | + | chr5.4:263070-263089 | None:intergenic | 40.0% | |
| TTTAACCGGTAGAAAACACC+AGG | - | chr5.4:264094-264113 | MS.gene046957:CDS | 40.0% | |
| TTTATAGCACGGCATAACTC+TGG | - | chr5.4:263484-263503 | MS.gene046957:intron | 40.0% | |
| TTTCATCATCGTCTCAAGGT+TGG | - | chr5.4:263366-263385 | MS.gene046957:intron | 40.0% | |
| ! | CCTGAGTTCAAAGTATCCTT+AGG | + | chr5.4:262326-262345 | None:intergenic | 40.0% |
| ! | CTTGTTCTAAACAAACCTCC+TGG | - | chr5.4:262476-262495 | MS.gene046957:intron | 40.0% |
| ! | TCAAAGGAGACACGTTTTGA+AGG | + | chr5.4:264003-264022 | None:intergenic | 40.0% |
| !! | CTTCCCTTGTTTCTATTACC+TGG | + | chr5.4:264115-264134 | None:intergenic | 40.0% |
| !! | GGTGTTTTCTACCGGTTAAA+GGG | + | chr5.4:264094-264113 | None:intergenic | 40.0% |
| !! | GTGTTTTCTACCGGTTAAAG+GGG | + | chr5.4:264093-264112 | None:intergenic | 40.0% |
| !! | GTTTGATTTGTCTAATCCGG+AGG | - | chr5.4:264322-264341 | MS.gene046957:CDS | 40.0% |
| !! | TGGTGTTTTCTACCGGTTAA+AGG | + | chr5.4:264095-264114 | None:intergenic | 40.0% |
| !! | TTTGATTTGGTTTCAGGTCG+TGG | - | chr5.4:263256-263275 | MS.gene046957:intron | 40.0% |
| AAACATAACAAAGGGGGGAG+GGG | + | chr5.4:263974-263993 | None:intergenic | 45.0% | |
| ACAAGTTCACCCACACTTAC+AGG | + | chr5.4:263462-263481 | None:intergenic | 45.0% | |
| ACAGTAGTAGTACTCACAGG+TGG | + | chr5.4:262146-262165 | None:intergenic | 45.0% | |
| ACGGCAAGCTCATAAGAAGT+GGG | - | chr5.4:264295-264314 | MS.gene046957:CDS | 45.0% | |
| ATATTAATGCCACCCTGCAC+TGG | + | chr5.4:262506-262525 | None:intergenic | 45.0% | |
| ATGCCCAATACCGTCTTTGT+AGG | + | chr5.4:262812-262831 | None:intergenic | 45.0% | |
| ATGGATACAACCTTACCCAG+TGG | + | chr5.4:262879-262898 | None:intergenic | 45.0% | |
| ATGTGACAGCAGAGAGTTGT+TGG | + | chr5.4:263090-263109 | None:intergenic | 45.0% | |
| CAAGTTCACCCACACTTACA+GGG | + | chr5.4:263461-263480 | None:intergenic | 45.0% | |
| CATTAATGCTCCACTGGGTA+AGG | - | chr5.4:262866-262885 | MS.gene046957:intron | 45.0% | |
| CATTACCAGTGACATGAGTC+GGG | + | chr5.4:264043-264062 | None:intergenic | 45.0% | |
| CTAAACATAACAAAGGGGGG+AGG | + | chr5.4:263976-263995 | None:intergenic | 45.0% | |
| CTGCTGTCACATGAATGCTT+AGG | - | chr5.4:263098-263117 | MS.gene046957:intron | 45.0% | |
| GGAGTCATTAATGCTCCACT+GGG | - | chr5.4:262861-262880 | MS.gene046957:intron | 45.0% | |
| GTATAACCCATTTCAGGGCA+GGG | + | chr5.4:262196-262215 | None:intergenic | 45.0% | |
| GTCACATGAATGCTTAGGCT+AGG | - | chr5.4:263103-263122 | MS.gene046957:intron | 45.0% | |
| GTGAGAGATTCATGTTTGGG+GGG | + | chr5.4:262401-262420 | None:intergenic | 45.0% | |
| GTGATTGTCCCTGTAAGTGT+GGG | - | chr5.4:263450-263469 | MS.gene046957:intron | 45.0% | |
| GTTGTAGTACCAAGATCAGC+TGG | + | chr5.4:264146-264165 | None:intergenic | 45.0% | |
| TACCTAACACTTCAGCACAG+TGG | + | chr5.4:264247-264266 | None:intergenic | 45.0% | |
| TATAACCCATTTCAGGGCAG+GGG | + | chr5.4:262195-262214 | None:intergenic | 45.0% | |
| TCGTCGTCAGTTGTCATCTT+CGG | - | chr5.4:262085-262104 | MS.gene046957:CDS | 45.0% | |
| TCTAGTCTATGCACCAATCG+AGG | + | chr5.4:262587-262606 | None:intergenic | 45.0% | |
| TGAATCACTTGAGCTGGAAG+CGG | - | chr5.4:264529-264548 | MS.gene046957:CDS | 45.0% | |
| TGTGATTGTCCCTGTAAGTG+TGG | - | chr5.4:263449-263468 | MS.gene046957:intron | 45.0% | |
| TGTTCTTCAGTTGAGTCCTC+CGG | + | chr5.4:264341-264360 | None:intergenic | 45.0% | |
| TTACTCTCAACCTCCTCGAT+TGG | - | chr5.4:262571-262590 | MS.gene046957:intron | 45.0% | |
| TTGGAGCTTTCCCCTTTAAC+CGG | - | chr5.4:264080-264099 | MS.gene046957:CDS | 45.0% | |
| TTGGGGACTACAAGTATGGA+CGG | - | chr5.4:264276-264295 | MS.gene046957:CDS | 45.0% | |
| ! | ACAAAGACGGTATTGGGCAT+TGG | - | chr5.4:262812-262831 | MS.gene046957:intron | 45.0% |
| ! | CATGTCACTGGTAATGATGC+AGG | - | chr5.4:264047-264066 | MS.gene046957:CDS | 45.0% |
| ! | TTTCAGGTCGTGGTTGACAA+CGG | - | chr5.4:263266-263285 | MS.gene046957:CDS | 45.0% |
| AACATAACAAAGGGGGGAGG+GGG | + | chr5.4:263973-263992 | None:intergenic | 50.0% | |
| ACACTTCAGCACAGTGGACA+CGG | + | chr5.4:264241-264260 | None:intergenic | 50.0% | |
| ACGACGACTCCATGATCTCA+CGG | + | chr5.4:262069-262088 | None:intergenic | 50.0% | |
| AGTCTATGCACCAATCGAGG+AGG | + | chr5.4:262584-262603 | None:intergenic | 50.0% | |
| CGGAGTCATTAATGCTCCAC+TGG | - | chr5.4:262860-262879 | MS.gene046957:intron | 50.0% | |
| CGGCAAGCTCATAAGAAGTG+GGG | - | chr5.4:264296-264315 | MS.gene046957:CDS | 50.0% | |
| CGTATAACCCATTTCAGGGC+AGG | + | chr5.4:262197-262216 | None:intergenic | 50.0% | |
| CTTGGATGTCCTAGACGTTC+AGG | - | chr5.4:262837-262856 | MS.gene046957:intron | 50.0% | |
| GACGGCAAGCTCATAAGAAG+TGG | - | chr5.4:264294-264313 | MS.gene046957:CDS | 50.0% | |
| GTATACGAGGCCACACACTA+TGG | + | chr5.4:263057-263076 | None:intergenic | 50.0% | |
| TCGAAGTCGAAGAGGTCACT+TGG | + | chr5.4:262172-262191 | None:intergenic | 50.0% | |
| TCGTCAGTTGTCATCTTCGG+CGG | - | chr5.4:262088-262107 | MS.gene046957:CDS | 50.0% | |
| TGGGAGCGGAAGATGGAAAA+TGG | - | chr5.4:262111-262130 | MS.gene046957:CDS | 50.0% | |
| ! | GTCCACTGTGCTGAAGTGTT+AGG | - | chr5.4:264242-264261 | MS.gene046957:CDS | 50.0% |
| ! | TCATGTTTGGGGGGTGTAGT+AGG | + | chr5.4:262392-262411 | None:intergenic | 50.0% |
| !! | CGGTATTGGGCATTGGTTCT+TGG | - | chr5.4:262819-262838 | MS.gene046957:intron | 50.0% |
| !!! | AAGGAAGAGGCACTCCCTTT+TGG | - | chr5.4:264365-264384 | MS.gene046957:CDS | 50.0% |
| ACATAACAAAGGGGGGAGGG+GGG | + | chr5.4:263972-263991 | None:intergenic | 55.0% | |
| ACGACTCCATGATCTCACGG+CGG | + | chr5.4:262066-262085 | None:intergenic | 55.0% | |
| ATGACTCCGCCTGAACGTCT+AGG | + | chr5.4:262849-262868 | None:intergenic | 55.0% | |
| CAGTTGTCATCTTCGGCGGT+GGG | - | chr5.4:262092-262111 | MS.gene046957:CDS | 55.0% | |
| GCAATCCCGACTCATGTCAC+TGG | - | chr5.4:264035-264054 | MS.gene046957:CDS | 55.0% | |
| GGATGTCCTAGACGTTCAGG+CGG | - | chr5.4:262840-262859 | MS.gene046957:intron | 55.0% | |
| TCAGTTGTCATCTTCGGCGG+TGG | - | chr5.4:262091-262110 | MS.gene046957:CDS | 55.0% | |
| TTCGACCCCTGCCCTGAAAT+GGG | - | chr5.4:262187-262206 | MS.gene046957:CDS | 55.0% | |
| ACCTCCTGGAATGCCAGTGC+AGG | - | chr5.4:262490-262509 | MS.gene046957:intron | 60.0% | |
| CCTCCTGGAATGCCAGTGCA+GGG | - | chr5.4:262491-262510 | MS.gene046957:intron | 60.0% | |
| CTTCGACCCCTGCCCTGAAA+TGG | - | chr5.4:262186-262205 | MS.gene046957:CDS | 60.0% | |
| ATCTCACGGCGGCTCCGACT+CGG | + | chr5.4:262055-262074 | None:intergenic | 65.0% | |
| CCTGGAATGCCAGTGCAGGG+TGG | - | chr5.4:262494-262513 | MS.gene046957:intron | 65.0% | |
| GGCAGGGGTCGAAGTCGAAG+AGG | + | chr5.4:262180-262199 | None:intergenic | 65.0% | |
| GTCATCTTCGGCGGTGGGAG+CGG | - | chr5.4:262097-262116 | MS.gene046957:CDS | 65.0% | |
| TAACAAAGGGGGGAGGGGGG+AGG | + | chr5.4:263969-263988 | None:intergenic | 65.0% | |
| TCGGAGCCGCCGTGAGATCA+TGG | - | chr5.4:262057-262076 | MS.gene046957:CDS | 65.0% | |
| ! | CCACCCTGCACTGGCATTCC+AGG | + | chr5.4:262497-262516 | None:intergenic | 65.0% |
| ! | CCCTGCACTGGCATTCCAGG+AGG | + | chr5.4:262494-262513 | None:intergenic | 65.0% |
| TCGGCGGTGGGAGCGGAAGA+TGG | - | chr5.4:262104-262123 | MS.gene046957:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 262044 | 264598 | 262044 | ID=MS.gene046957 |
| chr5.4 | mRNA | 262044 | 264598 | 262044 | ID=MS.gene046957.t1;Parent=MS.gene046957 |
| chr5.4 | exon | 263936 | 264598 | 263936 | ID=MS.gene046957.t1.exon1;Parent=MS.gene046957.t1 |
| chr5.4 | CDS | 263936 | 264598 | 263936 | ID=cds.MS.gene046957.t1;Parent=MS.gene046957.t1 |
| chr5.4 | exon | 263755 | 263853 | 263755 | ID=MS.gene046957.t1.exon2;Parent=MS.gene046957.t1 |
| chr5.4 | CDS | 263755 | 263853 | 263755 | ID=cds.MS.gene046957.t1;Parent=MS.gene046957.t1 |
| chr5.4 | exon | 263259 | 263370 | 263259 | ID=MS.gene046957.t1.exon3;Parent=MS.gene046957.t1 |
| chr5.4 | CDS | 263259 | 263370 | 263259 | ID=cds.MS.gene046957.t1;Parent=MS.gene046957.t1 |
| chr5.4 | exon | 262527 | 262573 | 262527 | ID=MS.gene046957.t1.exon4;Parent=MS.gene046957.t1 |
| chr5.4 | CDS | 262527 | 262573 | 262527 | ID=cds.MS.gene046957.t1;Parent=MS.gene046957.t1 |
| chr5.4 | exon | 262044 | 262406 | 262044 | ID=MS.gene046957.t1.exon5;Parent=MS.gene046957.t1 |
| chr5.4 | CDS | 262044 | 262406 | 262044 | ID=cds.MS.gene046957.t1;Parent=MS.gene046957.t1 |
| Gene Sequence |
| Protein sequence |
