Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04699.t1 | XP_017418550.1 | 94.2 | 498 | 28 | 1 | 1 | 497 | 1 | 498 | 2.90E-262 | 914.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04699.t1 | Q9M8J9 | 75.0 | 372 | 93 | 0 | 35 | 406 | 30 | 401 | 8.7e-167 | 588.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04699.t1 | A0A371GAS9 | 89.1 | 497 | 46 | 2 | 1 | 497 | 1 | 489 | 2.1e-254 | 887.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene33918 | MS.gene04699 | PPI |
MS.gene60766 | MS.gene04699 | PPI |
MS.gene04699 | MS.gene88846 | PPI |
MS.gene006074 | MS.gene04699 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04699.t1 | MTR_7g094490 | 99.754 | 406 | 1 | 0 | 1 | 406 | 1 | 406 | 0.0 | 845 |
MS.gene04699.t1 | MTR_1g072650 | 90.541 | 370 | 35 | 0 | 37 | 406 | 41 | 410 | 0.0 | 715 |
MS.gene04699.t1 | MTR_5g087500 | 57.990 | 388 | 146 | 6 | 29 | 406 | 23 | 403 | 1.30e-156 | 451 |
MS.gene04699.t1 | MTR_5g087500 | 61.934 | 331 | 117 | 5 | 29 | 355 | 23 | 348 | 1.62e-145 | 421 |
MS.gene04699.t1 | MTR_7g086500 | 57.632 | 380 | 153 | 4 | 32 | 406 | 13 | 389 | 4.39e-145 | 422 |
MS.gene04699.t1 | MTR_5g087500 | 61.398 | 329 | 119 | 4 | 29 | 353 | 23 | 347 | 4.83e-145 | 420 |
MS.gene04699.t1 | MTR_7g086500 | 59.938 | 322 | 123 | 3 | 32 | 350 | 13 | 331 | 1.82e-130 | 382 |
MS.gene04699.t1 | MTR_4g009630 | 60.335 | 179 | 71 | 0 | 35 | 213 | 23 | 201 | 5.17e-74 | 238 |
MS.gene04699.t1 | MTR_4g009630 | 60.335 | 179 | 71 | 0 | 35 | 213 | 23 | 201 | 9.07e-73 | 236 |
MS.gene04699.t1 | MTR_7g094500 | 100.000 | 92 | 0 | 0 | 406 | 497 | 2 | 93 | 2.25e-60 | 193 |
MS.gene04699.t1 | MTR_7g104700 | 98.913 | 92 | 1 | 0 | 406 | 497 | 2 | 93 | 5.56e-60 | 192 |
MS.gene04699.t1 | MTR_3g069000 | 52.973 | 185 | 87 | 0 | 200 | 384 | 51 | 235 | 3.52e-59 | 197 |
MS.gene04699.t1 | MTR_1g104870 | 31.288 | 163 | 92 | 3 | 187 | 344 | 517 | 664 | 1.74e-16 | 82.8 |
MS.gene04699.t1 | MTR_5g005940 | 31.875 | 160 | 95 | 2 | 187 | 344 | 514 | 661 | 2.24e-16 | 82.4 |
MS.gene04699.t1 | MTR_7g094910 | 27.389 | 157 | 97 | 3 | 189 | 344 | 511 | 651 | 3.93e-14 | 75.5 |
MS.gene04699.t1 | MTR_7g094900 | 27.389 | 157 | 97 | 3 | 189 | 344 | 530 | 670 | 3.97e-14 | 75.5 |
MS.gene04699.t1 | MTR_3g088660 | 27.568 | 185 | 113 | 5 | 201 | 379 | 74 | 243 | 1.30e-12 | 68.2 |
MS.gene04699.t1 | MTR_3g061090 | 27.815 | 151 | 94 | 3 | 197 | 345 | 83 | 220 | 1.95e-11 | 64.7 |
MS.gene04699.t1 | MTR_1g029850 | 23.765 | 324 | 201 | 8 | 31 | 344 | 4 | 291 | 2.89e-11 | 65.1 |
MS.gene04699.t1 | MTR_3g061090 | 27.815 | 151 | 94 | 3 | 197 | 345 | 155 | 292 | 3.04e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04699.t1 | AT3G06190 | 72.250 | 400 | 111 | 0 | 7 | 406 | 2 | 401 | 0.0 | 619 |
MS.gene04699.t1 | AT5G19000 | 72.776 | 371 | 101 | 0 | 36 | 406 | 32 | 402 | 0.0 | 587 |
MS.gene04699.t1 | AT5G19000 | 72.776 | 371 | 101 | 0 | 36 | 406 | 32 | 402 | 0.0 | 587 |
MS.gene04699.t1 | AT5G19000 | 66.502 | 406 | 101 | 1 | 36 | 406 | 32 | 437 | 0.0 | 570 |
MS.gene04699.t1 | AT3G06190 | 72.832 | 346 | 94 | 0 | 7 | 352 | 2 | 347 | 0.0 | 541 |
MS.gene04699.t1 | AT2G39760 | 63.714 | 350 | 127 | 0 | 29 | 378 | 16 | 365 | 1.49e-170 | 487 |
MS.gene04699.t1 | AT2G39760 | 64.286 | 322 | 115 | 0 | 29 | 350 | 16 | 337 | 5.68e-157 | 450 |
MS.gene04699.t1 | AT2G39760 | 64.286 | 322 | 115 | 0 | 29 | 350 | 16 | 337 | 5.68e-157 | 450 |
MS.gene04699.t1 | AT2G39760 | 64.286 | 322 | 115 | 0 | 29 | 350 | 16 | 337 | 1.16e-156 | 449 |
MS.gene04699.t1 | AT3G03740 | 59.259 | 378 | 143 | 4 | 5 | 378 | 18 | 388 | 1.38e-156 | 453 |
MS.gene04699.t1 | AT3G43700 | 54.756 | 389 | 163 | 6 | 1 | 382 | 1 | 383 | 8.78e-147 | 427 |
MS.gene04699.t1 | AT5G21010 | 55.412 | 388 | 157 | 5 | 5 | 385 | 1 | 379 | 2.37e-144 | 420 |
MS.gene04699.t1 | AT3G43700 | 54.972 | 362 | 150 | 6 | 1 | 355 | 1 | 356 | 9.22e-137 | 399 |
MS.gene04699.t1 | AT3G43700 | 55.742 | 357 | 145 | 6 | 1 | 350 | 1 | 351 | 1.75e-136 | 398 |
MS.gene04699.t1 | AT3G06190 | 71.094 | 256 | 74 | 0 | 7 | 262 | 2 | 257 | 5.27e-132 | 385 |
MS.gene04699.t1 | AT3G06190 | 71.094 | 256 | 74 | 0 | 7 | 262 | 2 | 257 | 6.65e-132 | 384 |
MS.gene04699.t1 | AT3G06190 | 69.231 | 260 | 79 | 1 | 7 | 265 | 2 | 261 | 2.50e-128 | 375 |
MS.gene04699.t1 | AT1G03330 | 92.391 | 92 | 7 | 0 | 406 | 497 | 2 | 93 | 2.96e-56 | 182 |
MS.gene04699.t1 | AT5G19330 | 28.283 | 198 | 117 | 4 | 187 | 379 | 519 | 696 | 6.60e-18 | 87.4 |
MS.gene04699.t1 | AT5G13060 | 25.907 | 193 | 125 | 4 | 193 | 384 | 557 | 732 | 3.71e-14 | 75.5 |
Find 133 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGAAAGGCAATCATCTTTA+AGG | 0.151802 | 7.3:+16516880 | None:intergenic |
TTTCGGTTGGTGGGTACGAC+TGG | 0.267781 | 7.3:-16517974 | MS.gene04699:CDS |
TCTAACATTGGTCACCAATT+TGG | 0.290090 | 7.3:-16516786 | MS.gene04699:CDS |
ATTGCAATGGAATATATCTT+TGG | 0.297756 | 7.3:+16516816 | None:intergenic |
TTTCCAGCAGTTGACCAAAT+TGG | 0.308262 | 7.3:+16516772 | None:intergenic |
CTTGATGGTAGCGACATAAA+TGG | 0.313292 | 7.3:-16515252 | MS.gene04699:CDS |
TTACTGGGATGAACACAAAA+TGG | 0.317610 | 7.3:-16516254 | MS.gene04699:CDS |
AGTTGTAGCCACGGTATTAA+TGG | 0.325761 | 7.3:+16516131 | None:intergenic |
TTTGGTCAACTGCTGGAAAA+TGG | 0.327985 | 7.3:-16516768 | MS.gene04699:CDS |
GTGCGAGCCTTTCACTGTTT+CGG | 0.338988 | 7.3:+16518067 | None:intergenic |
CCTGACATGCAAGAGCTTAC+TGG | 0.346812 | 7.3:-16516270 | MS.gene04699:CDS |
TTTCTCGTACTTCAAAGATT+TGG | 0.349513 | 7.3:-16513626 | MS.gene04699:CDS |
CTTTCAAAGGGGATCGGGAT+TGG | 0.349830 | 7.3:-16518020 | MS.gene04699:CDS |
TCCATCAGGGTAGAAATAAA+TGG | 0.352142 | 7.3:+16517950 | None:intergenic |
TTCATTGCGCTTGCGAGTGA+TGG | 0.366715 | 7.3:-16517891 | MS.gene04699:CDS |
TTTCAAAGGGGATCGGGATT+GGG | 0.367398 | 7.3:-16518019 | MS.gene04699:CDS |
CGAGCTTGATGTTAAGGTAT+TGG | 0.368384 | 7.3:+16513536 | None:intergenic |
CCGCGGTATTTCAAGGTATA+AGG | 0.381273 | 7.3:+16517768 | None:intergenic |
CCAGTAAGCTCTTGCATGTC+AGG | 0.381423 | 7.3:+16516270 | None:intergenic |
TCCTCAACACTCTTTCCATC+AGG | 0.388296 | 7.3:+16517936 | None:intergenic |
ATCTGTTCTGACTGAGCTAC+TGG | 0.388739 | 7.3:-16515337 | MS.gene04699:CDS |
TTTCAAGAGTCCTCTCAAAA+TGG | 0.393526 | 7.3:+16517796 | None:intergenic |
TGTCTTCAACTTTAATAGAC+TGG | 0.397130 | 7.3:+16516622 | None:intergenic |
GCCTTTCACTGTTTCGGTGA+TGG | 0.397678 | 7.3:+16518073 | None:intergenic |
AAAATGGGCAACAACCTTGA+TGG | 0.400210 | 7.3:-16516238 | MS.gene04699:CDS |
TTGCAATGGAATATATCTTT+GGG | 0.415668 | 7.3:+16516817 | None:intergenic |
AAAAGCTGGGCTCTGAAAAC+AGG | 0.418885 | 7.3:+16516669 | None:intergenic |
AAGATGGTTTCGCGGTTTCT+CGG | 0.425427 | 7.3:+16518150 | None:intergenic |
CTTTCCCACTCTGATCCAAA+AGG | 0.428484 | 7.3:+16517838 | None:intergenic |
GGCTAGATTTACTGAGCATT+CGG | 0.429590 | 7.3:-16515307 | MS.gene04699:CDS |
TGCCACAAGGAGAGAAGCCC+GGG | 0.436743 | 7.3:-16510908 | MS.gene04699:CDS |
TATAAGCCTGAGCCTCTCTA+AGG | 0.439005 | 7.3:+16516182 | None:intergenic |
ACTCGCTTTCAAAGGGGATC+GGG | 0.445344 | 7.3:-16518025 | MS.gene04699:CDS |
CTTTCTGTTAATTGTAGTGT+TGG | 0.448249 | 7.3:-16516864 | MS.gene04699:CDS |
GCCATTTATTTCTACCCTGA+TGG | 0.449168 | 7.3:-16517951 | MS.gene04699:CDS |
GATGAGGAAGATGGCGATGA+TGG | 0.450032 | 7.3:+16518122 | None:intergenic |
CATACTACCGCGGTATTTCA+AGG | 0.451447 | 7.3:+16517761 | None:intergenic |
CGACGAAGTTGTCGCCGGTT+CGG | 0.453320 | 7.3:+16518100 | None:intergenic |
TCGCACCAGTTCAAGATCAC+TGG | 0.462687 | 7.3:-16518050 | MS.gene04699:CDS |
TGATGGATTTGAGTACTTGA+AGG | 0.465111 | 7.3:-16515370 | MS.gene04699:CDS |
TCACCAATTTGGTCAACTGC+TGG | 0.470708 | 7.3:-16516775 | MS.gene04699:CDS |
TTTGCTTTCAGCTTTCTGTA+AGG | 0.472959 | 7.3:-16511008 | MS.gene04699:intron |
CTGACATGCAAGAGCTTACT+GGG | 0.474237 | 7.3:-16516269 | MS.gene04699:CDS |
AATTGGTGACCAATGTTAGA+AGG | 0.476229 | 7.3:+16516789 | None:intergenic |
TTCGGTTGGTGGGTACGACT+GGG | 0.480343 | 7.3:-16517973 | MS.gene04699:CDS |
AGTTCAATGTCCACACCTTC+CGG | 0.482532 | 7.3:+16510940 | None:intergenic |
AGCAGCCGCTAGAAGATGTT+GGG | 0.482623 | 7.3:+16516215 | None:intergenic |
CTCGTACTTCAAAGATTTGG+TGG | 0.482905 | 7.3:-16513623 | MS.gene04699:CDS |
GCCATCTTCCTCATCCGAAC+CGG | 0.485420 | 7.3:-16518114 | MS.gene04699:CDS |
TCATTGCGCTTGCGAGTGAT+GGG | 0.488038 | 7.3:-16517890 | MS.gene04699:CDS |
TTGATGGTAGCGACATAAAT+GGG | 0.492627 | 7.3:-16515251 | MS.gene04699:CDS |
TGAGACAGACTGCTTTCAGC+TGG | 0.493739 | 7.3:+16516079 | None:intergenic |
CACTGGGTACTCGCTTTCAA+AGG | 0.497134 | 7.3:-16518033 | MS.gene04699:CDS |
ACTGGGTACTCGCTTTCAAA+GGG | 0.502570 | 7.3:-16518032 | MS.gene04699:CDS |
GGCGATGATGGATTTGAAGA+TGG | 0.510513 | 7.3:+16518134 | None:intergenic |
TACTCGCTTTCAAAGGGGAT+CGG | 0.513011 | 7.3:-16518026 | MS.gene04699:CDS |
CGTGGCTACAACTTTAGCCT+TGG | 0.515788 | 7.3:-16516121 | MS.gene04699:CDS |
GTTATGCCTTAGAGAGGCTC+AGG | 0.515843 | 7.3:-16516188 | MS.gene04699:CDS |
AGTTGTCGCCGGTTCGGATG+AGG | 0.516664 | 7.3:+16518106 | None:intergenic |
AGTAGCTCAGTCAGAACAGA+TGG | 0.522563 | 7.3:+16515339 | None:intergenic |
GTCTTCAACTTTAATAGACT+GGG | 0.522594 | 7.3:+16516623 | None:intergenic |
GCCGGTTCGGATGAGGAAGA+TGG | 0.527058 | 7.3:+16518113 | None:intergenic |
AGTACCCAGTGATCTTGAAC+TGG | 0.527135 | 7.3:+16518045 | None:intergenic |
AGGAATGAAGCAATACTTGA+TGG | 0.534209 | 7.3:-16515267 | MS.gene04699:CDS |
TCAGCTGTGATGCAAACTGA+TGG | 0.535341 | 7.3:-16515387 | MS.gene04699:intron |
CAGCAGCCGCTAGAAGATGT+TGG | 0.535413 | 7.3:+16516214 | None:intergenic |
TACTGGGATGAACACAAAAT+GGG | 0.538886 | 7.3:-16516253 | MS.gene04699:CDS |
ATGTGAGCTTTGAAGTGGAT+GGG | 0.539335 | 7.3:-16516734 | MS.gene04699:CDS |
TTTGAGAGGACTCTTGAAAG+TGG | 0.547746 | 7.3:-16517792 | MS.gene04699:CDS |
ATGCCACAAGGAGAGAAGCC+CGG | 0.548759 | 7.3:-16510909 | MS.gene04699:CDS |
TAGAAGATGTTGGGCCATCA+AGG | 0.550820 | 7.3:+16516224 | None:intergenic |
GAGTGGGAAAGAGAGGCATA+AGG | 0.552695 | 7.3:-16517826 | MS.gene04699:CDS |
TGGGTACTTTGATCTCTCAT+AGG | 0.553110 | 7.3:+16516642 | None:intergenic |
CAACTGCTGGAAAATGGTAA+AGG | 0.557886 | 7.3:-16516762 | MS.gene04699:CDS |
TGGATCAGAGTGGGAAAGAG+AGG | 0.559531 | 7.3:-16517833 | MS.gene04699:CDS |
CAACACTACAATTAACAGAA+AGG | 0.560566 | 7.3:+16516865 | None:intergenic |
TGAAATACCGCGGTAGTATG+TGG | 0.562660 | 7.3:-16517758 | MS.gene04699:intron |
GAGATACGTACAATTGCCTC+CGG | 0.563468 | 7.3:-16510959 | MS.gene04699:CDS |
AGAATGCAAGGTTCCTCTGA+TGG | 0.563659 | 7.3:+16513564 | None:intergenic |
CGCACCAGTTCAAGATCACT+GGG | 0.564063 | 7.3:-16518049 | MS.gene04699:CDS |
TTTCCCACTCTGATCCAAAA+GGG | 0.564821 | 7.3:+16517839 | None:intergenic |
GTTGTGAGGTCACGCACGGA+AGG | 0.565111 | 7.3:-16516840 | MS.gene04699:CDS |
ACCCCGGGCTTCTCTCCTTG+TGG | 0.566921 | 7.3:+16510906 | None:intergenic |
GCAATACCACCTTCTAACAT+TGG | 0.569252 | 7.3:-16516798 | MS.gene04699:CDS |
ATTGTAGTGTTGGTGTTGTG+AGG | 0.569688 | 7.3:-16516854 | MS.gene04699:CDS |
TGGATTTGAAGATGGTTTCG+CGG | 0.577032 | 7.3:+16518142 | None:intergenic |
GTTAGAAGGTGGTATTGCAA+TGG | 0.578466 | 7.3:+16516803 | None:intergenic |
TAGCGACATAAATGGGAGGC+GGG | 0.581746 | 7.3:-16515244 | MS.gene04699:intron |
ACAGTGGTGTTGCTCTGCCA+AGG | 0.585829 | 7.3:+16516104 | None:intergenic |
GTCTATTAAAGTTGAAGACA+TGG | 0.587011 | 7.3:-16516619 | MS.gene04699:CDS |
GTAGCGACATAAATGGGAGG+CGG | 0.587515 | 7.3:-16515245 | MS.gene04699:CDS |
CCTCAACACTCTTTCCATCA+GGG | 0.588059 | 7.3:+16517937 | None:intergenic |
TCGTACTTCAAAGATTTGGT+GGG | 0.591251 | 7.3:-16513622 | MS.gene04699:CDS |
CGCAATGAAAAGCGACACAT+AGG | 0.595341 | 7.3:+16517905 | None:intergenic |
CTGCTTCATCAGAGGATCAG+TGG | 0.596818 | 7.3:-16510983 | MS.gene04699:CDS |
TGTGAGCTTTGAAGTGGATG+GGG | 0.599589 | 7.3:-16516733 | MS.gene04699:CDS |
GAGAGAGAGATACCATGTGA+GGG | 0.599690 | 7.3:+16513482 | None:intergenic |
TTTGGTGGGAAGAGAAGTGA+CGG | 0.599876 | 7.3:-16513608 | MS.gene04699:CDS |
ACAATTGCCTCCGGAAGGTG+TGG | 0.601280 | 7.3:-16510950 | MS.gene04699:CDS |
AGAGAGAGAGATACCATGTG+AGG | 0.605635 | 7.3:+16513481 | None:intergenic |
CTGCTTTCAGCTGGAAACAG+TGG | 0.607188 | 7.3:+16516088 | None:intergenic |
TACGTACAATTGCCTCCGGA+AGG | 0.608966 | 7.3:-16510955 | MS.gene04699:CDS |
GATGTGAGCTTTGAAGTGGA+TGG | 0.611734 | 7.3:-16516735 | MS.gene04699:CDS |
TTAACAAAATCAACCACCCC+GGG | 0.612233 | 7.3:+16510891 | None:intergenic |
TGTGTTTCAGGGGTTACAAG+CGG | 0.617806 | 7.3:-16516938 | MS.gene04699:intron |
CAAGGCTAAAGTTGTAGCCA+CGG | 0.622185 | 7.3:+16516122 | None:intergenic |
GTAAGGAACTGCTTCATCAG+AGG | 0.623322 | 7.3:-16510991 | MS.gene04699:CDS |
GTATTGGTCAACAGAATGCA+AGG | 0.624995 | 7.3:+16513552 | None:intergenic |
TCCATCACCGAAACAGTGAA+AGG | 0.625558 | 7.3:-16518074 | MS.gene04699:CDS |
GATGTCGACGAAGTTGTCGC+CGG | 0.628940 | 7.3:+16518095 | None:intergenic |
AAGTGATGTGAGCTTTGAAG+TGG | 0.629597 | 7.3:-16516739 | MS.gene04699:CDS |
CCCTGATGGAAAGAGTGTTG+AGG | 0.639733 | 7.3:-16517937 | MS.gene04699:CDS |
CTGATCGTTATGCCTTAGAG+AGG | 0.645940 | 7.3:-16516194 | MS.gene04699:CDS |
TGGTGACCAATGTTAGAAGG+TGG | 0.651217 | 7.3:+16516792 | None:intergenic |
AACTGTTGCATGATGCCACA+AGG | 0.651942 | 7.3:-16510921 | MS.gene04699:CDS |
TGGTGTTGTGAGGTCACGCA+CGG | 0.652634 | 7.3:-16516844 | MS.gene04699:CDS |
GATTGGGAAATACATAGCGT+CGG | 0.657071 | 7.3:-16518003 | MS.gene04699:CDS |
ATTAACAAAATCAACCACCC+CGG | 0.669310 | 7.3:+16510890 | None:intergenic |
GTAGCTCAGTCAGAACAGAT+GGG | 0.683418 | 7.3:+16515340 | None:intergenic |
CTGGGTACTCGCTTTCAAAG+GGG | 0.684078 | 7.3:-16518031 | MS.gene04699:CDS |
TCAATGTCCACACCTTCCGG+AGG | 0.686185 | 7.3:+16510943 | None:intergenic |
GACTGAGCTACTGGAGTACG+TGG | 0.688714 | 7.3:-16515328 | MS.gene04699:CDS |
ACAAGGAGAGAAGCCCGGGG+TGG | 0.693695 | 7.3:-16510904 | MS.gene04699:CDS |
AAGAACGATTTAGCCATCAG+AGG | 0.696928 | 7.3:-16513577 | MS.gene04699:CDS |
CCTTATACCTTGAAATACCG+CGG | 0.699018 | 7.3:-16517768 | MS.gene04699:CDS |
GATGGCCCAACATCTTCTAG+CGG | 0.704220 | 7.3:-16516220 | MS.gene04699:CDS |
GCCACCTCTGAAAATCTCAG+AGG | 0.704264 | 7.3:-16516048 | MS.gene04699:intron |
ATGGTAGCGACATAAATGGG+AGG | 0.709241 | 7.3:-16515248 | MS.gene04699:CDS |
TATTAAAGTTGAAGACATGG+AGG | 0.710382 | 7.3:-16516616 | MS.gene04699:CDS |
AGATGTCGCCATTAATACCG+TGG | 0.713502 | 7.3:-16516139 | MS.gene04699:CDS |
GCCACAAGGAGAGAAGCCCG+GGG | 0.716300 | 7.3:-16510907 | MS.gene04699:CDS |
TCAAGACAGATACCCTCACA+TGG | 0.727038 | 7.3:-16513494 | MS.gene04699:intron |
GAGCTTACCACATACTACCG+CGG | 0.744761 | 7.3:+16517751 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 16510900 | 16518186 | 16510900 | ID=MS.gene04699 |
chr7.3 | mRNA | 16510900 | 16518186 | 16510900 | ID=MS.gene04699.t1;Parent=MS.gene04699 |
chr7.3 | exon | 16517759 | 16518186 | 16517759 | ID=MS.gene04699.t1.exon1;Parent=MS.gene04699.t1 |
chr7.3 | CDS | 16517759 | 16518186 | 16517759 | ID=cds.MS.gene04699.t1;Parent=MS.gene04699.t1 |
chr7.3 | exon | 16516602 | 16516950 | 16516602 | ID=MS.gene04699.t1.exon2;Parent=MS.gene04699.t1 |
chr7.3 | CDS | 16516602 | 16516950 | 16516602 | ID=cds.MS.gene04699.t1;Parent=MS.gene04699.t1 |
chr7.3 | exon | 16516049 | 16516325 | 16516049 | ID=MS.gene04699.t1.exon3;Parent=MS.gene04699.t1 |
chr7.3 | CDS | 16516049 | 16516325 | 16516049 | ID=cds.MS.gene04699.t1;Parent=MS.gene04699.t1 |
chr7.3 | exon | 16515245 | 16515405 | 16515245 | ID=MS.gene04699.t1.exon4;Parent=MS.gene04699.t1 |
chr7.3 | CDS | 16515245 | 16515405 | 16515245 | ID=cds.MS.gene04699.t1;Parent=MS.gene04699.t1 |
chr7.3 | exon | 16513495 | 16513653 | 16513495 | ID=MS.gene04699.t1.exon5;Parent=MS.gene04699.t1 |
chr7.3 | CDS | 16513495 | 16513653 | 16513495 | ID=cds.MS.gene04699.t1;Parent=MS.gene04699.t1 |
chr7.3 | exon | 16510900 | 16511019 | 16510900 | ID=MS.gene04699.t1.exon6;Parent=MS.gene04699.t1 |
chr7.3 | CDS | 16510900 | 16511019 | 16510900 | ID=cds.MS.gene04699.t1;Parent=MS.gene04699.t1 |
Gene Sequence |
Protein sequence |