Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047017.t1 | XP_024629046.1 | 92.7 | 422 | 30 | 1 | 1 | 422 | 1 | 421 | 1.50E-195 | 692.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047017.t1 | Q9LVJ0 | 70.3 | 337 | 91 | 5 | 88 | 422 | 92 | 421 | 7.0e-125 | 448.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047017.t1 | A0A396GSD0 | 92.7 | 422 | 30 | 1 | 1 | 422 | 1 | 421 | 1.1e-195 | 692.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047017 | MS.gene028007 | PPI |
| MS.gene72908 | MS.gene047017 | PPI |
| MS.gene98452 | MS.gene047017 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047017.t1 | MTR_6g071465 | 64.213 | 394 | 124 | 5 | 30 | 422 | 41 | 418 | 1.32e-165 | 471 |
| MS.gene047017.t1 | MTR_5g028020 | 44.548 | 431 | 196 | 11 | 4 | 420 | 7 | 408 | 1.88e-110 | 331 |
| MS.gene047017.t1 | MTR_8g012420 | 31.903 | 373 | 193 | 11 | 69 | 417 | 32 | 367 | 8.56e-52 | 178 |
| MS.gene047017.t1 | MTR_7g053530 | 28.412 | 359 | 197 | 11 | 77 | 417 | 21 | 337 | 9.77e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047017.t1 | AT3G17800 | 66.667 | 369 | 114 | 5 | 56 | 422 | 60 | 421 | 5.45e-163 | 465 |
| MS.gene047017.t1 | AT3G17800 | 66.667 | 369 | 114 | 5 | 56 | 422 | 66 | 427 | 5.82e-163 | 465 |
| MS.gene047017.t1 | AT1G48450 | 64.402 | 368 | 116 | 5 | 63 | 422 | 63 | 423 | 1.09e-162 | 464 |
| MS.gene047017.t1 | AT1G48450 | 59.551 | 267 | 93 | 5 | 63 | 321 | 63 | 322 | 4.63e-101 | 304 |
| MS.gene047017.t1 | AT1G48450 | 58.672 | 271 | 97 | 5 | 63 | 325 | 63 | 326 | 5.36e-100 | 302 |
| MS.gene047017.t1 | AT1G32160 | 44.855 | 379 | 166 | 9 | 59 | 420 | 52 | 404 | 7.91e-99 | 301 |
| MS.gene047017.t1 | AT3G07310 | 35.946 | 370 | 188 | 10 | 58 | 422 | 31 | 356 | 1.07e-54 | 186 |
| MS.gene047017.t1 | AT5G48590 | 33.242 | 364 | 169 | 8 | 59 | 417 | 34 | 328 | 4.70e-46 | 162 |
| MS.gene047017.t1 | AT3G07310 | 36.879 | 282 | 133 | 8 | 146 | 422 | 11 | 252 | 6.19e-45 | 157 |
Find 123 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTAGCTTTGGTGGTTTA+AGG | 0.185413 | 4.3:-98959 | MS.gene047017:CDS |
| CTTTCCTCCTTCTAATAATA+AGG | 0.195362 | 4.3:-100383 | MS.gene047017:intron |
| GAATGAGAGCCAAGTGGTTT+TGG | 0.255570 | 4.3:+99465 | None:intergenic |
| AACCACTTGGCTCTCATTCT+TGG | 0.279367 | 4.3:-99461 | MS.gene047017:CDS |
| CTCACGTGTGATAACCATTC+CGG | 0.313242 | 4.3:+99016 | None:intergenic |
| GATAGTACCTTATTATTAGA+AGG | 0.339689 | 4.3:+100376 | None:intergenic |
| ATCTTATTGTTGCGTATCTC+TGG | 0.348662 | 4.3:+99093 | None:intergenic |
| AAGCACACAGAGGCATTGTT+TGG | 0.370683 | 4.3:-99044 | MS.gene047017:CDS |
| TCGACCCTACCAGTTGCATC+TGG | 0.375048 | 4.3:+99551 | None:intergenic |
| ACTTCTCCAGCTGGAACCTT+TGG | 0.389283 | 4.3:+99333 | None:intergenic |
| GCAATCTTATGAGAAGAGTC+TGG | 0.407257 | 4.3:+99969 | None:intergenic |
| GAAACCATCAAAATTAGCTT+TGG | 0.409557 | 4.3:-98969 | MS.gene047017:CDS |
| ATACGCAACAATAAGATCTA+AGG | 0.415923 | 4.3:-99087 | MS.gene047017:CDS |
| GATGTCAGTCCTGGTGGATT+TGG | 0.419214 | 4.3:-99176 | MS.gene047017:CDS |
| ATTGGTTGTGCAAAAGTTCA+TGG | 0.419257 | 4.3:-99606 | MS.gene047017:CDS |
| ACCATCAAAATTAGCTTTGG+TGG | 0.419551 | 4.3:-98966 | MS.gene047017:CDS |
| ATGTTGTAGGAGAAGGATCT+TGG | 0.432474 | 4.3:+99808 | None:intergenic |
| CCACCGCAGCAGGCACAAGA+TGG | 0.439006 | 4.3:+99886 | None:intergenic |
| CCAGGCCAAGTAGATACTTC+AGG | 0.441052 | 4.3:+99203 | None:intergenic |
| CAACTCAATTTAAGACGAAA+TGG | 0.445619 | 4.3:+98865 | None:intergenic |
| AGTTGCTGGTCCACCGCAGC+AGG | 0.446973 | 4.3:+99876 | None:intergenic |
| GTGAAGAAGGCGGCAGGATC+CGG | 0.448164 | 4.3:+100405 | None:intergenic |
| CCATCTTGTGCCTGCTGCGG+TGG | 0.450747 | 4.3:-99886 | MS.gene047017:CDS |
| CTCATCCTGAAGTATCTACT+TGG | 0.453032 | 4.3:-99208 | MS.gene047017:CDS |
| TCACGTGTGATAACCATTCC+GGG | 0.453796 | 4.3:+99017 | None:intergenic |
| ACAAGATCGGTGGATGTTGT+AGG | 0.463443 | 4.3:+99795 | None:intergenic |
| TCATGCTTATGCCTAGGGAT+GGG | 0.466457 | 4.3:+100095 | None:intergenic |
| CAGGAGAATTGCTGAGGTCA+AGG | 0.467848 | 4.3:-99669 | MS.gene047017:CDS |
| CCGTCTTCTTCAATTACAAC+CGG | 0.472072 | 4.3:-100424 | MS.gene047017:CDS |
| CTTCAGGATGAGATGTCACT+TGG | 0.474439 | 4.3:+99219 | None:intergenic |
| ATTGGAGCTGGAGAAGTTGC+TGG | 0.477347 | 4.3:+99862 | None:intergenic |
| TAGAAGGAGGAAAGTGAAGA+AGG | 0.482490 | 4.3:+100392 | None:intergenic |
| CATGCTTATGCCTAGGGATG+GGG | 0.483080 | 4.3:+100096 | None:intergenic |
| AGTTGCATCTGGGGTTATAG+AGG | 0.486143 | 4.3:+99562 | None:intergenic |
| CACCGCAGCAGGCACAAGAT+GGG | 0.488056 | 4.3:+99887 | None:intergenic |
| AAGAAGACGGCGGTGATAAG+AGG | 0.488970 | 4.3:+100437 | None:intergenic |
| TGGGTCTGGCGAGGAGGAAG+AGG | 0.490825 | 4.3:+99989 | None:intergenic |
| GATTCATGGTCAAATGAAGA+TGG | 0.491027 | 4.3:-99530 | MS.gene047017:CDS |
| CTCATGCTTATGCCTAGGGA+TGG | 0.491888 | 4.3:+100094 | None:intergenic |
| CTCATTCTTGGTAACAGAGC+AGG | 0.493044 | 4.3:-99449 | MS.gene047017:CDS |
| AAATGAAAGGAGGACAGCTC+TGG | 0.495873 | 4.3:-99645 | MS.gene047017:CDS |
| TCTATAACCCCAGATGCAAC+TGG | 0.497553 | 4.3:-99560 | MS.gene047017:CDS |
| CAACTGGTAGGGTCGATTCA+TGG | 0.499248 | 4.3:-99544 | MS.gene047017:CDS |
| CGACCCTACCAGTTGCATCT+GGG | 0.501121 | 4.3:+99552 | None:intergenic |
| CCTGGTGGCGATGTCAGTCC+TGG | 0.502730 | 4.3:-99185 | MS.gene047017:CDS |
| CCTGAAGTATCTACTTGGCC+TGG | 0.503117 | 4.3:-99203 | MS.gene047017:CDS |
| CAAATTAGCAAACTGAGGAT+AGG | 0.505986 | 4.3:-99407 | MS.gene047017:CDS |
| TTATGAGAAGAGTCTGGGTC+TGG | 0.513057 | 4.3:+99975 | None:intergenic |
| AACTATGTGATGTCCTTTGA+CGG | 0.517188 | 4.3:-99125 | MS.gene047017:CDS |
| GTCTCTCATGCTTATGCCTA+GGG | 0.517855 | 4.3:+100090 | None:intergenic |
| AAATTAGCAAACTGAGGATA+GGG | 0.522002 | 4.3:-99406 | MS.gene047017:CDS |
| GAGCAGCATCACGATCAGAT+TGG | 0.523258 | 4.3:+99844 | None:intergenic |
| TGAGAAAGAAACTGACCGAT+TGG | 0.524356 | 4.3:+99927 | None:intergenic |
| CTTCAGTTTCAGTCTCCAAT+CGG | 0.525591 | 4.3:-99942 | MS.gene047017:CDS |
| AGGAAAGTGAAGAAGGCGGC+AGG | 0.526126 | 4.3:+100399 | None:intergenic |
| TGATAAGAGGAGGACGGCTG+TGG | 0.526370 | 4.3:+100450 | None:intergenic |
| ACCGCAGCAGGCACAAGATG+GGG | 0.529440 | 4.3:+99888 | None:intergenic |
| CATCACGATCAGATTGGAGC+TGG | 0.529818 | 4.3:+99850 | None:intergenic |
| TATGCAGCATCAGTGATGTA+TGG | 0.532897 | 4.3:-99377 | MS.gene047017:CDS |
| CAGTTTGCTAATTTGAGCAA+CGG | 0.532928 | 4.3:+99415 | None:intergenic |
| CTGGAGGGTATCACCGTCAA+AGG | 0.539393 | 4.3:+99112 | None:intergenic |
| GAAGTGTCCACTTCACTACC+AGG | 0.539689 | 4.3:+99242 | None:intergenic |
| AGTCTCTCATGCTTATGCCT+AGG | 0.540729 | 4.3:+100089 | None:intergenic |
| GCACTTCCGTCCCCATCCCT+AGG | 0.541488 | 4.3:-100106 | MS.gene047017:CDS |
| AGTCCTGGTGGATTTGGCTA+TGG | 0.543579 | 4.3:-99170 | MS.gene047017:CDS |
| TGATGAATACTACTGTCGTC+TGG | 0.547484 | 4.3:+99287 | None:intergenic |
| TTATTGTTGCGTATCTCTGG+AGG | 0.549788 | 4.3:+99096 | None:intergenic |
| CCAGGACTGACATCGCCACC+AGG | 0.556642 | 4.3:+99185 | None:intergenic |
| ATTGTTTGGAAGACCCGGAA+TGG | 0.558540 | 4.3:-99030 | MS.gene047017:CDS |
| AGTTGACCAAAGGTTCCAGC+TGG | 0.559976 | 4.3:-99339 | MS.gene047017:CDS |
| ATTCATGGTCAAATGAAGAT+GGG | 0.560883 | 4.3:-99529 | MS.gene047017:CDS |
| TTCTTAAGCGAGTTGACCAA+AGG | 0.564871 | 4.3:-99349 | MS.gene047017:CDS |
| CTTTCATCGACTTCTCCAGC+TGG | 0.565573 | 4.3:+99324 | None:intergenic |
| CAATCTTATGAGAAGAGTCT+GGG | 0.567804 | 4.3:+99970 | None:intergenic |
| AAGCATGAGAGACTCTCTGT+TGG | 0.570763 | 4.3:-100080 | MS.gene047017:CDS |
| GAGGCATTGTTTGGAAGACC+CGG | 0.570792 | 4.3:-99035 | MS.gene047017:CDS |
| CTAACCTAGCCGTATGGACG+TGG | 0.574142 | 4.3:-100476 | None:intergenic |
| TCGGTGGATGTTGTAGGAGA+AGG | 0.576997 | 4.3:+99801 | None:intergenic |
| CATCACATAGTTACGCAACC+TGG | 0.581846 | 4.3:+99136 | None:intergenic |
| TAGTATTCATCAAACTATTG+TGG | 0.584247 | 4.3:-99276 | MS.gene047017:CDS |
| TAGCAAACTGAGGATAGGGC+AGG | 0.587895 | 4.3:-99402 | MS.gene047017:CDS |
| GACCCTACCAGTTGCATCTG+GGG | 0.591341 | 4.3:+99553 | None:intergenic |
| AACCCCAGATGCAACTGGTA+GGG | 0.592069 | 4.3:-99555 | MS.gene047017:CDS |
| AGAGTCTGGGTCTGGCGAGG+AGG | 0.592281 | 4.3:+99983 | None:intergenic |
| TAACCCCAGATGCAACTGGT+AGG | 0.592551 | 4.3:-99556 | MS.gene047017:CDS |
| GTGCTTCTCAATAATGCTCA+CGG | 0.595139 | 4.3:+99061 | None:intergenic |
| TATTGTTGCGTATCTCTGGA+GGG | 0.599151 | 4.3:+99097 | None:intergenic |
| GGAAGAGATCTTGTACACAT+TGG | 0.602232 | 4.3:-99624 | MS.gene047017:CDS |
| AGTACCTTATTATTAGAAGG+AGG | 0.610361 | 4.3:+100379 | None:intergenic |
| CCGCAGCAGGCACAAGATGG+GGG | 0.617352 | 4.3:+99889 | None:intergenic |
| AATGGTTATCACACGTGAGG+GGG | 0.623377 | 4.3:-99012 | MS.gene047017:CDS |
| CGCAACAATAAGATCTAAGG+AGG | 0.623407 | 4.3:-99084 | MS.gene047017:CDS |
| AGAAGAGTCTGGGTCTGGCG+AGG | 0.623678 | 4.3:+99980 | None:intergenic |
| ATACCATAGCCAAATCCACC+AGG | 0.624211 | 4.3:+99167 | None:intergenic |
| GGAATGGTTATCACACGTGA+GGG | 0.627905 | 4.3:-99014 | MS.gene047017:CDS |
| GTTGCATCTGGGGTTATAGA+GGG | 0.629178 | 4.3:+99563 | None:intergenic |
| CCTGTACAAAACAAGATCGG+TGG | 0.629414 | 4.3:+99785 | None:intergenic |
| TTTGCTAATTTGAGCAACGG+AGG | 0.631175 | 4.3:+99418 | None:intergenic |
| AAACCTGTACAAAACAAGAT+CGG | 0.632341 | 4.3:+99782 | None:intergenic |
| ATTGGAGACTGAAACTGAAG+AGG | 0.632400 | 4.3:+99945 | None:intergenic |
| GGTGGCGATGTCAGTCCTGG+TGG | 0.636075 | 4.3:-99182 | MS.gene047017:CDS |
| TTCAGGATGAGATGTCACTT+GGG | 0.636764 | 4.3:+99220 | None:intergenic |
| CGGAATGGTTATCACACGTG+AGG | 0.638347 | 4.3:-99015 | MS.gene047017:CDS |
| TGAGATGATCCAAAACCACT+TGG | 0.639402 | 4.3:-99474 | MS.gene047017:CDS |
| CTGAGGTCAAGGCAAATGAA+AGG | 0.640671 | 4.3:-99658 | MS.gene047017:CDS |
| GCTATGGTATAAAGCCGACC+AGG | 0.641906 | 4.3:-99154 | MS.gene047017:CDS |
| TGCAAGACCTGGTAGTGAAG+TGG | 0.643713 | 4.3:-99249 | MS.gene047017:CDS |
| TTGAGAGCTACGTGGACTCG+AGG | 0.645363 | 4.3:-98890 | MS.gene047017:CDS |
| AAGACGGCGGTGATAAGAGG+AGG | 0.647164 | 4.3:+100440 | None:intergenic |
| CCGGTTGTAATTGAAGAAGA+CGG | 0.652339 | 4.3:+100424 | None:intergenic |
| GAAGTATCTACTTGGCCTGG+TGG | 0.652940 | 4.3:-99200 | MS.gene047017:CDS |
| GAATGGTTATCACACGTGAG+GGG | 0.665737 | 4.3:-99013 | MS.gene047017:CDS |
| ACATAGTTACGCAACCTGGT+CGG | 0.667626 | 4.3:+99140 | None:intergenic |
| TACCAAGAATGAGAGCCAAG+TGG | 0.671508 | 4.3:+99459 | None:intergenic |
| CGGCGGTGATAAGAGGAGGA+CGG | 0.675716 | 4.3:+100444 | None:intergenic |
| CTTATGCCTAGGGATGGGGA+CGG | 0.676237 | 4.3:+100100 | None:intergenic |
| CTGGGATGTTGAGAGCTACG+TGG | 0.676347 | 4.3:-98898 | MS.gene047017:CDS |
| AGGTCAAGGCAAATGAAAGG+AGG | 0.687801 | 4.3:-99655 | MS.gene047017:CDS |
| ATTGTGGATGATGCAAGACC+TGG | 0.688318 | 4.3:-99260 | MS.gene047017:CDS |
| TTGCTCAAATTAGCAAACTG+AGG | 0.691447 | 4.3:-99412 | MS.gene047017:CDS |
| AAGGAGGAAAGTGAAGAAGG+CGG | 0.701835 | 4.3:+100395 | None:intergenic |
| CATTATTGAGAAGCACACAG+AGG | 0.764856 | 4.3:-99054 | MS.gene047017:CDS |
| GTTGTAATTGAAGAAGACGG+CGG | 0.772972 | 4.3:+100427 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGCAAGATATTATACA+GGG | + | chr4.3:99142-99161 | None:intergenic | 20.0% |
| !! | TAAATTGCAAGATATTATAC+AGG | + | chr4.3:99143-99162 | None:intergenic | 20.0% |
| ! | GATAGTACCTTATTATTAGA+AGG | + | chr4.3:98959-98978 | None:intergenic | 25.0% |
| ! | TAGTATTCATCAAACTATTG+TGG | - | chr4.3:100056-100075 | MS.gene047017:CDS | 25.0% |
| ! | TCATATATTCTGTTTGTTTG+TGG | + | chr4.3:99175-99194 | None:intergenic | 25.0% |
| !!! | ATCAAACTAATGCTTTGTTT+AGG | - | chr4.3:99082-99101 | MS.gene047017:CDS | 25.0% |
| AAACCTGTACAAAACAAGAT+CGG | + | chr4.3:99553-99572 | None:intergenic | 30.0% | |
| AAATTAGCAAACTGAGGATA+GGG | - | chr4.3:99926-99945 | MS.gene047017:CDS | 30.0% | |
| AGTACCTTATTATTAGAAGG+AGG | + | chr4.3:98956-98975 | None:intergenic | 30.0% | |
| ATACGCAACAATAAGATCTA+AGG | - | chr4.3:100245-100264 | MS.gene047017:intron | 30.0% | |
| ATGAACAAGCAAGAAATAGT+AGG | + | chr4.3:99612-99631 | None:intergenic | 30.0% | |
| ATTCATGGTCAAATGAAGAT+GGG | - | chr4.3:99803-99822 | MS.gene047017:CDS | 30.0% | |
| CTTTCCTCCTTCTAATAATA+AGG | - | chr4.3:98949-98968 | MS.gene047017:CDS | 30.0% | |
| GACAATAGATTGATGAATTG+AGG | + | chr4.3:99590-99609 | None:intergenic | 30.0% | |
| TAATAATTACCACTAGTTGC+TGG | - | chr4.3:99052-99071 | MS.gene047017:CDS | 30.0% | |
| TGAAATATTGATCCATTCCT+TGG | - | chr4.3:99192-99211 | MS.gene047017:CDS | 30.0% | |
| ! | GAAACCATCAAAATTAGCTT+TGG | - | chr4.3:100363-100382 | MS.gene047017:intron | 30.0% |
| !! | AAATTAGCTTTGGTGGTTTA+AGG | - | chr4.3:100373-100392 | MS.gene047017:intron | 30.0% |
| !! | ACTATCTTCTCAACTTTTTC+AGG | - | chr4.3:99644-99663 | MS.gene047017:CDS | 30.0% |
| !!! | TTTAAGGAGACTTGTTTTAG+AGG | - | chr4.3:100389-100408 | MS.gene047017:CDS | 30.0% |
| AACTATGTGATGTCCTTTGA+CGG | - | chr4.3:100207-100226 | MS.gene047017:intron | 35.0% | |
| AAGTTGAGAAGATAGTGCAA+TGG | + | chr4.3:99640-99659 | None:intergenic | 35.0% | |
| ATATTGATCCATTCCTTGGT+TGG | - | chr4.3:99196-99215 | MS.gene047017:CDS | 35.0% | |
| ATCTTATTGTTGCGTATCTC+TGG | + | chr4.3:100242-100261 | None:intergenic | 35.0% | |
| ATTGGTTGTGCAAAAGTTCA+TGG | - | chr4.3:99726-99745 | MS.gene047017:intron | 35.0% | |
| ATTGTAATTCCAGCAACTAG+TGG | + | chr4.3:99064-99083 | None:intergenic | 35.0% | |
| CAAATTAGCAAACTGAGGAT+AGG | - | chr4.3:99925-99944 | MS.gene047017:CDS | 35.0% | |
| CAATCTTATGAGAAGAGTCT+GGG | + | chr4.3:99365-99384 | None:intergenic | 35.0% | |
| GATGAATTGAGGTGAAAGAA+TGG | + | chr4.3:99579-99598 | None:intergenic | 35.0% | |
| GATTCATGGTCAAATGAAGA+TGG | - | chr4.3:99802-99821 | MS.gene047017:CDS | 35.0% | |
| TTGCTCAAATTAGCAAACTG+AGG | - | chr4.3:99920-99939 | MS.gene047017:CDS | 35.0% | |
| ! | ACCACCAAAGCTAATTTTGA+TGG | + | chr4.3:100370-100389 | None:intergenic | 35.0% |
| !! | ACCATCAAAATTAGCTTTGG+TGG | - | chr4.3:100366-100385 | MS.gene047017:intron | 35.0% |
| !! | CAGTTTGCTAATTTGAGCAA+CGG | + | chr4.3:99920-99939 | None:intergenic | 35.0% |
| !! | GACTTTTGGTTGTTTTCTCT+GGG | - | chr4.3:100416-100435 | MS.gene047017:CDS | 35.0% |
| !! | TGACTTTTGGTTGTTTTCTC+TGG | - | chr4.3:100415-100434 | MS.gene047017:CDS | 35.0% |
| ATGTTGTAGGAGAAGGATCT+TGG | + | chr4.3:99527-99546 | None:intergenic | 40.0% | |
| ATTGGAGACTGAAACTGAAG+AGG | + | chr4.3:99390-99409 | None:intergenic | 40.0% | |
| CCGGTTGTAATTGAAGAAGA+CGG | + | chr4.3:98911-98930 | None:intergenic | 40.0% | |
| CCGTCTTCTTCAATTACAAC+CGG | - | chr4.3:98908-98927 | MS.gene047017:CDS | 40.0% | |
| CGCAACAATAAGATCTAAGG+AGG | - | chr4.3:100248-100267 | MS.gene047017:intron | 40.0% | |
| CTTCAGTTTCAGTCTCCAAT+CGG | - | chr4.3:99390-99409 | MS.gene047017:CDS | 40.0% | |
| GCAATCTTATGAGAAGAGTC+TGG | + | chr4.3:99366-99385 | None:intergenic | 40.0% | |
| GGAAGAGATCTTGTACACAT+TGG | - | chr4.3:99708-99727 | MS.gene047017:intron | 40.0% | |
| GGGGGCAATTGATTATTCAA+AGG | - | chr4.3:100338-100357 | MS.gene047017:intron | 40.0% | |
| GTGCTTCTCAATAATGCTCA+CGG | + | chr4.3:100274-100293 | None:intergenic | 40.0% | |
| GTTGTAATTGAAGAAGACGG+CGG | + | chr4.3:98908-98927 | None:intergenic | 40.0% | |
| TAGAAGGAGGAAAGTGAAGA+AGG | + | chr4.3:98943-98962 | None:intergenic | 40.0% | |
| TATGCAGCATCAGTGATGTA+TGG | - | chr4.3:99955-99974 | MS.gene047017:CDS | 40.0% | |
| TATTGTTGCGTATCTCTGGA+GGG | + | chr4.3:100238-100257 | None:intergenic | 40.0% | |
| TGAGAAAGAAACTGACCGAT+TGG | + | chr4.3:99408-99427 | None:intergenic | 40.0% | |
| TGAGATGATCCAAAACCACT+TGG | - | chr4.3:99858-99877 | MS.gene047017:CDS | 40.0% | |
| TGATGAATACTACTGTCGTC+TGG | + | chr4.3:100048-100067 | None:intergenic | 40.0% | |
| TTATTGTTGCGTATCTCTGG+AGG | + | chr4.3:100239-100258 | None:intergenic | 40.0% | |
| TTTGCTAATTTGAGCAACGG+AGG | + | chr4.3:99917-99936 | None:intergenic | 40.0% | |
| ! | CATTATTGAGAAGCACACAG+AGG | - | chr4.3:100278-100297 | MS.gene047017:intron | 40.0% |
| ! | CTCATCCTGAAGTATCTACT+TGG | - | chr4.3:100124-100143 | MS.gene047017:intron | 40.0% |
| ! | TTCAGGATGAGATGTCACTT+GGG | + | chr4.3:100115-100134 | None:intergenic | 40.0% |
| ! | TTCTTAAGCGAGTTGACCAA+AGG | - | chr4.3:99983-100002 | MS.gene047017:CDS | 40.0% |
| !!! | CTTTTTCAGGAGAATTGCTG+AGG | - | chr4.3:99657-99676 | MS.gene047017:CDS | 40.0% |
| !!! | GAGAAGGATCTTGGTTTTGT+TGG | + | chr4.3:99518-99537 | None:intergenic | 40.0% |
| !!! | GTTTTAGAGGCTGTGACTTT+TGG | - | chr4.3:100402-100421 | MS.gene047017:CDS | 40.0% |
| AAATGAAAGGAGGACAGCTC+TGG | - | chr4.3:99687-99706 | MS.gene047017:intron | 45.0% | |
| AAGCATGAGAGACTCTCTGT+TGG | - | chr4.3:99252-99271 | MS.gene047017:CDS | 45.0% | |
| AAGGAGGAAAGTGAAGAAGG+CGG | + | chr4.3:98940-98959 | None:intergenic | 45.0% | |
| AATGGTTATCACACGTGAGG+GGG | - | chr4.3:100320-100339 | MS.gene047017:intron | 45.0% | |
| ACAAGATCGGTGGATGTTGT+AGG | + | chr4.3:99540-99559 | None:intergenic | 45.0% | |
| ACATAGTTACGCAACCTGGT+CGG | + | chr4.3:100195-100214 | None:intergenic | 45.0% | |
| AGGTCAAGGCAAATGAAAGG+AGG | - | chr4.3:99677-99696 | MS.gene047017:intron | 45.0% | |
| AGTCTCTCATGCTTATGCCT+AGG | + | chr4.3:99246-99265 | None:intergenic | 45.0% | |
| ATACCATAGCCAAATCCACC+AGG | + | chr4.3:100168-100187 | None:intergenic | 45.0% | |
| ATTGTGGATGATGCAAGACC+TGG | - | chr4.3:100072-100091 | MS.gene047017:CDS | 45.0% | |
| ATTGTTTGGAAGACCCGGAA+TGG | - | chr4.3:100302-100321 | MS.gene047017:intron | 45.0% | |
| CATCACATAGTTACGCAACC+TGG | + | chr4.3:100199-100218 | None:intergenic | 45.0% | |
| CCTGTACAAAACAAGATCGG+TGG | + | chr4.3:99550-99569 | None:intergenic | 45.0% | |
| CTCACGTGTGATAACCATTC+CGG | + | chr4.3:100319-100338 | None:intergenic | 45.0% | |
| CTGAGGTCAAGGCAAATGAA+AGG | - | chr4.3:99674-99693 | MS.gene047017:intron | 45.0% | |
| CTTCAGGATGAGATGTCACT+TGG | + | chr4.3:100116-100135 | None:intergenic | 45.0% | |
| GAATGGTTATCACACGTGAG+GGG | - | chr4.3:100319-100338 | MS.gene047017:intron | 45.0% | |
| GGAATGGTTATCACACGTGA+GGG | - | chr4.3:100318-100337 | MS.gene047017:intron | 45.0% | |
| GTCTCTCATGCTTATGCCTA+GGG | + | chr4.3:99245-99264 | None:intergenic | 45.0% | |
| TACCAAGAATGAGAGCCAAG+TGG | + | chr4.3:99876-99895 | None:intergenic | 45.0% | |
| TCACGTGTGATAACCATTCC+GGG | + | chr4.3:100318-100337 | None:intergenic | 45.0% | |
| TCATGCTTATGCCTAGGGAT+GGG | + | chr4.3:99240-99259 | None:intergenic | 45.0% | |
| TCTATAACCCCAGATGCAAC+TGG | - | chr4.3:99772-99791 | MS.gene047017:intron | 45.0% | |
| TGATCCATTCCTTGGTTGGT+AGG | - | chr4.3:99200-99219 | MS.gene047017:CDS | 45.0% | |
| TTATGAGAAGAGTCTGGGTC+TGG | + | chr4.3:99360-99379 | None:intergenic | 45.0% | |
| ! | AACCACTTGGCTCTCATTCT+TGG | - | chr4.3:99871-99890 | MS.gene047017:CDS | 45.0% |
| ! | AGTTGCATCTGGGGTTATAG+AGG | + | chr4.3:99773-99792 | None:intergenic | 45.0% |
| ! | CTCATTCTTGGTAACAGAGC+AGG | - | chr4.3:99883-99902 | MS.gene047017:CDS | 45.0% |
| ! | GAATGAGAGCCAAGTGGTTT+TGG | + | chr4.3:99870-99889 | None:intergenic | 45.0% |
| ! | GTTGCATCTGGGGTTATAGA+GGG | + | chr4.3:99772-99791 | None:intergenic | 45.0% |
| ! | TGATTGTTGTTGCTTGCTGC+TGG | - | chr4.3:99013-99032 | MS.gene047017:CDS | 45.0% |
| !! | AAGCACACAGAGGCATTGTT+TGG | - | chr4.3:100288-100307 | MS.gene047017:intron | 45.0% |
| !!! | CCACCGATCTTGTTTTGTAC+AGG | - | chr4.3:99547-99566 | MS.gene047017:CDS | 45.0% |
| AACCCCAGATGCAACTGGTA+GGG | - | chr4.3:99777-99796 | MS.gene047017:intron | 50.0% | |
| AAGAAGACGGCGGTGATAAG+AGG | + | chr4.3:98898-98917 | None:intergenic | 50.0% | |
| AAGTGCACACCTACCAACCA+AGG | + | chr4.3:99212-99231 | None:intergenic | 50.0% | |
| ACTTCTCCAGCTGGAACCTT+TGG | + | chr4.3:100002-100021 | None:intergenic | 50.0% | |
| AGTTGACCAAAGGTTCCAGC+TGG | - | chr4.3:99993-100012 | MS.gene047017:CDS | 50.0% | |
| ATTGGAGCTGGAGAAGTTGC+TGG | + | chr4.3:99473-99492 | None:intergenic | 50.0% | |
| CACACCTACCAACCAAGGAA+TGG | + | chr4.3:99207-99226 | None:intergenic | 50.0% | |
| CAGGAGAATTGCTGAGGTCA+AGG | - | chr4.3:99663-99682 | MS.gene047017:CDS | 50.0% | |
| CATCACGATCAGATTGGAGC+TGG | + | chr4.3:99485-99504 | None:intergenic | 50.0% | |
| CATGCTTATGCCTAGGGATG+GGG | + | chr4.3:99239-99258 | None:intergenic | 50.0% | |
| CCAGGCCAAGTAGATACTTC+AGG | + | chr4.3:100132-100151 | None:intergenic | 50.0% | |
| CGGAATGGTTATCACACGTG+AGG | - | chr4.3:100317-100336 | MS.gene047017:intron | 50.0% | |
| CTCATGCTTATGCCTAGGGA+TGG | + | chr4.3:99241-99260 | None:intergenic | 50.0% | |
| GAGCAGCATCACGATCAGAT+TGG | + | chr4.3:99491-99510 | None:intergenic | 50.0% | |
| GCTATGGTATAAAGCCGACC+AGG | - | chr4.3:100178-100197 | MS.gene047017:intron | 50.0% | |
| TAACCCCAGATGCAACTGGT+AGG | - | chr4.3:99776-99795 | MS.gene047017:intron | 50.0% | |
| TAGCAAACTGAGGATAGGGC+AGG | - | chr4.3:99930-99949 | MS.gene047017:CDS | 50.0% | |
| TCGGTGGATGTTGTAGGAGA+AGG | + | chr4.3:99534-99553 | None:intergenic | 50.0% | |
| ! | CAACTGGTAGGGTCGATTCA+TGG | - | chr4.3:99788-99807 | MS.gene047017:CDS | 50.0% |
| ! | CCTGAAGTATCTACTTGGCC+TGG | - | chr4.3:100129-100148 | MS.gene047017:intron | 50.0% |
| ! | GAAGTATCTACTTGGCCTGG+TGG | - | chr4.3:100132-100151 | MS.gene047017:intron | 50.0% |
| ! | GAAGTGTCCACTTCACTACC+AGG | + | chr4.3:100093-100112 | None:intergenic | 50.0% |
| ! | TGCAAGACCTGGTAGTGAAG+TGG | - | chr4.3:100083-100102 | MS.gene047017:CDS | 50.0% |
| !! | AGTCCTGGTGGATTTGGCTA+TGG | - | chr4.3:100162-100181 | MS.gene047017:intron | 50.0% |
| !! | CTTTCATCGACTTCTCCAGC+TGG | + | chr4.3:100011-100030 | None:intergenic | 50.0% |
| !! | GAGGCATTGTTTGGAAGACC+CGG | - | chr4.3:100297-100316 | MS.gene047017:intron | 50.0% |
| !! | GATGTCAGTCCTGGTGGATT+TGG | - | chr4.3:100156-100175 | MS.gene047017:intron | 50.0% |
| AAGACGGCGGTGATAAGAGG+AGG | + | chr4.3:98895-98914 | None:intergenic | 55.0% | |
| AGGAAAGTGAAGAAGGCGGC+AGG | + | chr4.3:98936-98955 | None:intergenic | 55.0% | |
| CGACCCTACCAGTTGCATCT+GGG | + | chr4.3:99783-99802 | None:intergenic | 55.0% | |
| CTGGGATGTTGAGAGCTACG+TGG | - | chr4.3:100434-100453 | MS.gene047017:CDS | 55.0% | |
| CTTATGCCTAGGGATGGGGA+CGG | + | chr4.3:99235-99254 | None:intergenic | 55.0% | |
| GACCCTACCAGTTGCATCTG+GGG | + | chr4.3:99782-99801 | None:intergenic | 55.0% | |
| TCGACCCTACCAGTTGCATC+TGG | + | chr4.3:99784-99803 | None:intergenic | 55.0% | |
| TGATAAGAGGAGGACGGCTG+TGG | + | chr4.3:98885-98904 | None:intergenic | 55.0% | |
| TTGAGAGCTACGTGGACTCG+AGG | - | chr4.3:100442-100461 | MS.gene047017:CDS | 55.0% | |
| !! | CTGGAGGGTATCACCGTCAA+AGG | + | chr4.3:100223-100242 | None:intergenic | 55.0% |
| ACCGCAGCAGGCACAAGATG+GGG | + | chr4.3:99447-99466 | None:intergenic | 60.0% | |
| AGAAGAGTCTGGGTCTGGCG+AGG | + | chr4.3:99355-99374 | None:intergenic | 60.0% | |
| CACCGCAGCAGGCACAAGAT+GGG | + | chr4.3:99448-99467 | None:intergenic | 60.0% | |
| CGGCGGTGATAAGAGGAGGA+CGG | + | chr4.3:98891-98910 | None:intergenic | 60.0% | |
| GTGAAGAAGGCGGCAGGATC+CGG | + | chr4.3:98930-98949 | None:intergenic | 60.0% | |
| AGAGTCTGGGTCTGGCGAGG+AGG | + | chr4.3:99352-99371 | None:intergenic | 65.0% | |
| AGTTGCTGGTCCACCGCAGC+AGG | + | chr4.3:99459-99478 | None:intergenic | 65.0% | |
| CCACCGCAGCAGGCACAAGA+TGG | + | chr4.3:99449-99468 | None:intergenic | 65.0% | |
| CCAGGACTGACATCGCCACC+AGG | + | chr4.3:100150-100169 | None:intergenic | 65.0% | |
| CCATCTTGTGCCTGCTGCGG+TGG | - | chr4.3:99446-99465 | MS.gene047017:CDS | 65.0% | |
| CCCCCATCTTGTGCCTGCTG+CGG | - | chr4.3:99443-99462 | MS.gene047017:CDS | 65.0% | |
| CCGCAGCAGGCACAAGATGG+GGG | + | chr4.3:99446-99465 | None:intergenic | 65.0% | |
| GCACTTCCGTCCCCATCCCT+AGG | - | chr4.3:99226-99245 | MS.gene047017:CDS | 65.0% | |
| GGTGGCGATGTCAGTCCTGG+TGG | - | chr4.3:100150-100169 | MS.gene047017:intron | 65.0% | |
| TGGGTCTGGCGAGGAGGAAG+AGG | + | chr4.3:99346-99365 | None:intergenic | 65.0% | |
| ! | CCTGGTGGCGATGTCAGTCC+TGG | - | chr4.3:100147-100166 | MS.gene047017:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 98869 | 100485 | 98869 | ID=MS.gene047017 |
| chr4.3 | mRNA | 98869 | 100485 | 98869 | ID=MS.gene047017.t1;Parent=MS.gene047017 |
| chr4.3 | exon | 100384 | 100485 | 100384 | ID=MS.gene047017.t1.exon1;Parent=MS.gene047017.t1 |
| chr4.3 | CDS | 100384 | 100485 | 100384 | ID=cds.MS.gene047017.t1;Parent=MS.gene047017.t1 |
| chr4.3 | exon | 99786 | 100132 | 99786 | ID=MS.gene047017.t1.exon2;Parent=MS.gene047017.t1 |
| chr4.3 | CDS | 99786 | 100132 | 99786 | ID=cds.MS.gene047017.t1;Parent=MS.gene047017.t1 |
| chr4.3 | exon | 98869 | 99688 | 98869 | ID=MS.gene047017.t1.exon3;Parent=MS.gene047017.t1 |
| chr4.3 | CDS | 98869 | 99688 | 98869 | ID=cds.MS.gene047017.t1;Parent=MS.gene047017.t1 |
| Gene Sequence |
| Protein sequence |
