Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047033.t1 | XP_024629046.1 | 96.2 | 422 | 15 | 1 | 1 | 422 | 1 | 421 | 1.50E-206 | 728.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047033.t1 | Q9LVJ0 | 70.3 | 337 | 91 | 5 | 88 | 422 | 92 | 421 | 1.2e-124 | 448.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047033.t1 | A0A396GSD0 | 96.2 | 422 | 15 | 1 | 1 | 422 | 1 | 421 | 1.0e-206 | 728.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047033 | MS.gene028007 | PPI |
| MS.gene72908 | MS.gene047033 | PPI |
| MS.gene98452 | MS.gene047033 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047033.t1 | MTR_6g071465 | 64.467 | 394 | 123 | 5 | 30 | 422 | 41 | 418 | 7.65e-166 | 472 |
| MS.gene047033.t1 | MTR_5g028020 | 44.548 | 431 | 196 | 11 | 4 | 420 | 7 | 408 | 6.83e-110 | 329 |
| MS.gene047033.t1 | MTR_8g012420 | 31.880 | 367 | 191 | 10 | 75 | 417 | 36 | 367 | 8.73e-51 | 176 |
| MS.gene047033.t1 | MTR_7g053530 | 28.134 | 359 | 198 | 10 | 77 | 417 | 21 | 337 | 2.62e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047033.t1 | AT3G17800 | 60.870 | 437 | 140 | 10 | 1 | 422 | 1 | 421 | 4.73e-163 | 465 |
| MS.gene047033.t1 | AT3G17800 | 67.956 | 362 | 107 | 5 | 63 | 422 | 73 | 427 | 1.28e-162 | 464 |
| MS.gene047033.t1 | AT1G48450 | 64.402 | 368 | 116 | 5 | 63 | 422 | 63 | 423 | 1.88e-162 | 464 |
| MS.gene047033.t1 | AT1G48450 | 59.551 | 267 | 93 | 5 | 63 | 321 | 63 | 322 | 9.16e-101 | 303 |
| MS.gene047033.t1 | AT1G48450 | 58.672 | 271 | 97 | 5 | 63 | 325 | 63 | 326 | 9.22e-100 | 301 |
| MS.gene047033.t1 | AT1G32160 | 45.187 | 374 | 162 | 9 | 64 | 420 | 57 | 404 | 1.46e-98 | 300 |
| MS.gene047033.t1 | AT3G07310 | 36.314 | 369 | 185 | 11 | 59 | 422 | 33 | 356 | 3.97e-54 | 184 |
| MS.gene047033.t1 | AT5G48590 | 33.425 | 365 | 167 | 9 | 59 | 417 | 34 | 328 | 5.56e-46 | 162 |
| MS.gene047033.t1 | AT3G07310 | 36.879 | 282 | 133 | 8 | 146 | 422 | 11 | 252 | 6.00e-45 | 157 |
Find 123 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTAGCTTTGGTGGTTTA+AGG | 0.185413 | 4.1:-101317 | MS.gene047033:CDS |
| CTTTCCTCCTTCTAATAATA+AGG | 0.195362 | 4.1:-102720 | MS.gene047033:intron |
| GAATGAGAGCCAAGTGGTTT+TGG | 0.255570 | 4.1:+101823 | None:intergenic |
| AACCACTTGGCTCTCATTCT+TGG | 0.279367 | 4.1:-101819 | MS.gene047033:CDS |
| CTCACGTGTGATAACCATTC+CGG | 0.313242 | 4.1:+101374 | None:intergenic |
| GATAGTACCTTATTATTAGA+AGG | 0.339689 | 4.1:+102713 | None:intergenic |
| ATCTTATTGTTGCGTATCTC+TGG | 0.348662 | 4.1:+101451 | None:intergenic |
| AAGCACACAGAGGCATTGTT+TGG | 0.370683 | 4.1:-101402 | MS.gene047033:CDS |
| TCGACCCTACCAGTTGCATC+TGG | 0.375048 | 4.1:+101909 | None:intergenic |
| ACTTCTCCAGCTGGAACCTT+TGG | 0.389283 | 4.1:+101691 | None:intergenic |
| GCAATCTTATGAGAAGAGTC+TGG | 0.407257 | 4.1:+102315 | None:intergenic |
| GAAACCATCAAAATTAGCTT+TGG | 0.409557 | 4.1:-101327 | MS.gene047033:CDS |
| ATACGCAACAATAAGATCTA+AGG | 0.415923 | 4.1:-101445 | MS.gene047033:CDS |
| GATGTCAGTCCTGGTGGATT+TGG | 0.419214 | 4.1:-101534 | MS.gene047033:CDS |
| ATTGGTTGTGCAAAAGTTCA+TGG | 0.419257 | 4.1:-101964 | MS.gene047033:CDS |
| ACCATCAAAATTAGCTTTGG+TGG | 0.419551 | 4.1:-101324 | MS.gene047033:CDS |
| ATGTGGTAGGAGAAGGATCT+TGG | 0.429548 | 4.1:+102154 | None:intergenic |
| CCACCGCAGCAGGCACAAGA+TGG | 0.439006 | 4.1:+102232 | None:intergenic |
| CCAGGCCAAGTAGATACTTC+AGG | 0.441052 | 4.1:+101561 | None:intergenic |
| CAACTCAATTTAAGACGAAA+TGG | 0.445619 | 4.1:+101223 | None:intergenic |
| AGTTGCTGGTCCACCGCAGC+AGG | 0.446973 | 4.1:+102222 | None:intergenic |
| GTGAAGAAGGCGGCAGGATC+CGG | 0.448164 | 4.1:+102742 | None:intergenic |
| CCATCTTGTGCCTGCTGCGG+TGG | 0.450747 | 4.1:-102232 | MS.gene047033:CDS |
| CTCATCCTGAAGTATCTACT+TGG | 0.453032 | 4.1:-101566 | MS.gene047033:CDS |
| TCACGTGTGATAACCATTCC+GGG | 0.453796 | 4.1:+101375 | None:intergenic |
| TCATGCTTATGCCTAGGGAT+GGG | 0.466457 | 4.1:+102441 | None:intergenic |
| CAGGAGAATTGCTGAGGTCA+AGG | 0.467848 | 4.1:-102027 | MS.gene047033:CDS |
| CCGTCTTCTTCAATTACAAC+CGG | 0.472072 | 4.1:-102761 | MS.gene047033:CDS |
| CTTCAGGATGAGATGTCACT+TGG | 0.474439 | 4.1:+101577 | None:intergenic |
| ATTGGAGCTGGAGAAGTTGC+TGG | 0.477347 | 4.1:+102208 | None:intergenic |
| TAGAAGGAGGAAAGTGAAGA+AGG | 0.482490 | 4.1:+102729 | None:intergenic |
| CATGCTTATGCCTAGGGATG+GGG | 0.483080 | 4.1:+102442 | None:intergenic |
| AGTTGCATCTGGGGTTATAG+AGG | 0.486143 | 4.1:+101920 | None:intergenic |
| CACCGCAGCAGGCACAAGAT+GGG | 0.488056 | 4.1:+102233 | None:intergenic |
| TGGGTCTGGCGAGGAGGAAG+AGG | 0.490825 | 4.1:+102335 | None:intergenic |
| GATTCATGGTCAAATGAAGA+TGG | 0.491027 | 4.1:-101888 | MS.gene047033:CDS |
| CTCATGCTTATGCCTAGGGA+TGG | 0.491888 | 4.1:+102440 | None:intergenic |
| CTCATTCTTGGTAACAGAGC+AGG | 0.493044 | 4.1:-101807 | MS.gene047033:CDS |
| AAATGAAAGGAGGACAGCTC+TGG | 0.495873 | 4.1:-102003 | MS.gene047033:CDS |
| TCTATAACCCCAGATGCAAC+TGG | 0.497553 | 4.1:-101918 | MS.gene047033:CDS |
| CAACTGGTAGGGTCGATTCA+TGG | 0.499248 | 4.1:-101902 | MS.gene047033:CDS |
| CGACCCTACCAGTTGCATCT+GGG | 0.501121 | 4.1:+101910 | None:intergenic |
| CCTGGTGGCGATGTCAGTCC+TGG | 0.502730 | 4.1:-101543 | MS.gene047033:CDS |
| CCTGAAGTATCTACTTGGCC+TGG | 0.503117 | 4.1:-101561 | MS.gene047033:CDS |
| CAAATTAGCAAACTGAGGAT+AGG | 0.505986 | 4.1:-101765 | MS.gene047033:CDS |
| TTATGAGAAGAGTCTGGGTC+TGG | 0.513057 | 4.1:+102321 | None:intergenic |
| GAGCAACATCACGATCAGAT+TGG | 0.514423 | 4.1:+102190 | None:intergenic |
| AACTATGTGATGTCCTTTGA+CGG | 0.517188 | 4.1:-101483 | MS.gene047033:CDS |
| GTCTCTCATGCTTATGCCTA+GGG | 0.517855 | 4.1:+102436 | None:intergenic |
| AAATTAGCAAACTGAGGATA+GGG | 0.522002 | 4.1:-101764 | MS.gene047033:CDS |
| CAAAACAAGATCGGTGGATG+TGG | 0.522463 | 4.1:+102137 | None:intergenic |
| TGAGAAAGAAACTGACCGAT+TGG | 0.524356 | 4.1:+102273 | None:intergenic |
| CTTCAGTTTCAGTCTCCAAT+CGG | 0.525591 | 4.1:-102288 | MS.gene047033:CDS |
| AGGAAAGTGAAGAAGGCGGC+AGG | 0.526126 | 4.1:+102736 | None:intergenic |
| ACCGCAGCAGGCACAAGATG+GGG | 0.529440 | 4.1:+102234 | None:intergenic |
| TATGCAGCATCAGTGATGTA+TGG | 0.532897 | 4.1:-101735 | MS.gene047033:CDS |
| CAGTTTGCTAATTTGAGCAA+CGG | 0.532928 | 4.1:+101773 | None:intergenic |
| CATCACGATCAGATTGGAGC+TGG | 0.536635 | 4.1:+102196 | None:intergenic |
| CTGGAGGGTATCACCGTCAA+AGG | 0.539393 | 4.1:+101470 | None:intergenic |
| GAAGTGTCCACTTCACTACC+AGG | 0.539689 | 4.1:+101600 | None:intergenic |
| AGTCTCTCATGCTTATGCCT+AGG | 0.540729 | 4.1:+102435 | None:intergenic |
| GCACTTCCGTCCCCATCCCT+AGG | 0.541488 | 4.1:-102452 | MS.gene047033:CDS |
| AGTCCTGGTGGATTTGGCTA+TGG | 0.543579 | 4.1:-101528 | MS.gene047033:CDS |
| TGATGAATACTACTGTCGTC+TGG | 0.547484 | 4.1:+101645 | None:intergenic |
| TTATTGTTGCGTATCTCTGG+AGG | 0.549788 | 4.1:+101454 | None:intergenic |
| CCAGGACTGACATCGCCACC+AGG | 0.556642 | 4.1:+101543 | None:intergenic |
| ATTGTTTGGAAGACCCGGAA+TGG | 0.558540 | 4.1:-101388 | MS.gene047033:CDS |
| AGTTGACCAAAGGTTCCAGC+TGG | 0.559976 | 4.1:-101697 | MS.gene047033:CDS |
| ATTCATGGTCAAATGAAGAT+GGG | 0.560883 | 4.1:-101887 | MS.gene047033:CDS |
| TTCTTAAGCGAGTTGACCAA+AGG | 0.564871 | 4.1:-101707 | MS.gene047033:CDS |
| CTTTCATCGACTTCTCCAGC+TGG | 0.565573 | 4.1:+101682 | None:intergenic |
| CAATCTTATGAGAAGAGTCT+GGG | 0.567804 | 4.1:+102316 | None:intergenic |
| AAGCATGAGAGACTCTCTGT+TGG | 0.570763 | 4.1:-102426 | MS.gene047033:CDS |
| GAGGCATTGTTTGGAAGACC+CGG | 0.570792 | 4.1:-101393 | MS.gene047033:CDS |
| CTAACCTAGCCGTATGGACG+TGG | 0.574142 | 4.1:-102813 | None:intergenic |
| TGATAAGAAGAGGACGGCTG+TGG | 0.580594 | 4.1:+102787 | None:intergenic |
| CATCACATAGTTACGCAACC+TGG | 0.581846 | 4.1:+101494 | None:intergenic |
| TAGTATTCATCAAACTATTG+TGG | 0.584247 | 4.1:-101634 | MS.gene047033:CDS |
| TCGGTGGATGTGGTAGGAGA+AGG | 0.585056 | 4.1:+102147 | None:intergenic |
| TAGCAAACTGAGGATAGGGC+AGG | 0.587895 | 4.1:-101760 | MS.gene047033:CDS |
| GACCCTACCAGTTGCATCTG+GGG | 0.591341 | 4.1:+101911 | None:intergenic |
| AACCCCAGATGCAACTGGTA+GGG | 0.592069 | 4.1:-101913 | MS.gene047033:CDS |
| AGAGTCTGGGTCTGGCGAGG+AGG | 0.592281 | 4.1:+102329 | None:intergenic |
| TAACCCCAGATGCAACTGGT+AGG | 0.592551 | 4.1:-101914 | MS.gene047033:CDS |
| ACAAGATCGGTGGATGTGGT+AGG | 0.594792 | 4.1:+102141 | None:intergenic |
| GTGCTTCTCAATAATGCTCA+CGG | 0.595139 | 4.1:+101419 | None:intergenic |
| TATTGTTGCGTATCTCTGGA+GGG | 0.599151 | 4.1:+101455 | None:intergenic |
| GGAAGAGATCTTGTACACAT+TGG | 0.602232 | 4.1:-101982 | MS.gene047033:CDS |
| AGTACCTTATTATTAGAAGG+AGG | 0.610361 | 4.1:+102716 | None:intergenic |
| CCGCAGCAGGCACAAGATGG+GGG | 0.617352 | 4.1:+102235 | None:intergenic |
| AAGACGGCGGTGATAAGAAG+AGG | 0.618730 | 4.1:+102777 | None:intergenic |
| AATGGTTATCACACGTGAGG+GGG | 0.623377 | 4.1:-101370 | MS.gene047033:CDS |
| CGCAACAATAAGATCTAAGG+AGG | 0.623407 | 4.1:-101442 | MS.gene047033:CDS |
| AGAAGAGTCTGGGTCTGGCG+AGG | 0.623678 | 4.1:+102326 | None:intergenic |
| ATACCATAGCCAAATCCACC+AGG | 0.624211 | 4.1:+101525 | None:intergenic |
| GGAATGGTTATCACACGTGA+GGG | 0.627905 | 4.1:-101372 | MS.gene047033:CDS |
| GTTGCATCTGGGGTTATAGA+GGG | 0.629178 | 4.1:+101921 | None:intergenic |
| CCTGTACAAAACAAGATCGG+TGG | 0.629414 | 4.1:+102131 | None:intergenic |
| TTTGCTAATTTGAGCAACGG+AGG | 0.631175 | 4.1:+101776 | None:intergenic |
| ATTGGAGACTGAAACTGAAG+AGG | 0.632400 | 4.1:+102291 | None:intergenic |
| GGTGGCGATGTCAGTCCTGG+TGG | 0.636075 | 4.1:-101540 | MS.gene047033:CDS |
| TTCAGGATGAGATGTCACTT+GGG | 0.636764 | 4.1:+101578 | None:intergenic |
| CGGAATGGTTATCACACGTG+AGG | 0.638347 | 4.1:-101373 | MS.gene047033:CDS |
| TGAGATGATCCAAAACCACT+TGG | 0.639402 | 4.1:-101832 | MS.gene047033:CDS |
| CTGAGGTCAAGGCAAATGAA+AGG | 0.640671 | 4.1:-102016 | MS.gene047033:CDS |
| GCTATGGTATAAAGCCGACC+AGG | 0.641906 | 4.1:-101512 | MS.gene047033:CDS |
| AAACCTGTACAAAACAAGAT+CGG | 0.643644 | 4.1:+102128 | None:intergenic |
| TGCAAGACCTGGTAGTGAAG+TGG | 0.643713 | 4.1:-101607 | MS.gene047033:CDS |
| TTGAGAGCTACGTGGACTCG+AGG | 0.645363 | 4.1:-101248 | MS.gene047033:CDS |
| CCGGTTGTAATTGAAGAAGA+CGG | 0.652339 | 4.1:+102761 | None:intergenic |
| GAAGTATCTACTTGGCCTGG+TGG | 0.652940 | 4.1:-101558 | MS.gene047033:CDS |
| GAATGGTTATCACACGTGAG+GGG | 0.665737 | 4.1:-101371 | MS.gene047033:CDS |
| ACATAGTTACGCAACCTGGT+CGG | 0.667626 | 4.1:+101498 | None:intergenic |
| TACCAAGAATGAGAGCCAAG+TGG | 0.671508 | 4.1:+101817 | None:intergenic |
| CTTATGCCTAGGGATGGGGA+CGG | 0.676237 | 4.1:+102446 | None:intergenic |
| CTGGGATGTTGAGAGCTACG+TGG | 0.676347 | 4.1:-101256 | MS.gene047033:CDS |
| CGGCGGTGATAAGAAGAGGA+CGG | 0.676881 | 4.1:+102781 | None:intergenic |
| AGGTCAAGGCAAATGAAAGG+AGG | 0.687801 | 4.1:-102013 | MS.gene047033:CDS |
| ATTGTGGATGATGCAAGACC+TGG | 0.688318 | 4.1:-101618 | MS.gene047033:CDS |
| TTGCTCAAATTAGCAAACTG+AGG | 0.691447 | 4.1:-101770 | MS.gene047033:CDS |
| AAGGAGGAAAGTGAAGAAGG+CGG | 0.701835 | 4.1:+102732 | None:intergenic |
| CATTATTGAGAAGCACACAG+AGG | 0.764856 | 4.1:-101412 | MS.gene047033:CDS |
| GTTGTAATTGAAGAAGACGG+CGG | 0.772972 | 4.1:+102764 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGCAAGATATTATACA+GGG | + | chr4.1:101491-101510 | None:intergenic | 20.0% |
| !! | TAAATTGCAAGATATTATAC+AGG | + | chr4.1:101492-101511 | None:intergenic | 20.0% |
| ! | GATAGTACCTTATTATTAGA+AGG | + | chr4.1:101317-101336 | None:intergenic | 25.0% |
| ! | TAGTATTCATCAAACTATTG+TGG | - | chr4.1:102393-102412 | MS.gene047033:CDS | 25.0% |
| ! | TCATATATTCTGTTTGTTTG+TGG | + | chr4.1:101524-101543 | None:intergenic | 25.0% |
| AAACCTGTACAAAACAAGAT+CGG | + | chr4.1:101902-101921 | None:intergenic | 30.0% | |
| AAATTAGCAAACTGAGGATA+GGG | - | chr4.1:102263-102282 | MS.gene047033:CDS | 30.0% | |
| AGTACCTTATTATTAGAAGG+AGG | + | chr4.1:101314-101333 | None:intergenic | 30.0% | |
| ATACGCAACAATAAGATCTA+AGG | - | chr4.1:102582-102601 | MS.gene047033:intron | 30.0% | |
| ATGAACAAGCAAGAAATAGT+AGG | + | chr4.1:101949-101968 | None:intergenic | 30.0% | |
| ATTCATGGTCAAATGAAGAT+GGG | - | chr4.1:102140-102159 | MS.gene047033:CDS | 30.0% | |
| CTTTCCTCCTTCTAATAATA+AGG | - | chr4.1:101307-101326 | MS.gene047033:CDS | 30.0% | |
| GACAATAGATTGATGAATTG+AGG | + | chr4.1:101927-101946 | None:intergenic | 30.0% | |
| TAATAATTACCACTAGTTGC+TGG | - | chr4.1:101401-101420 | MS.gene047033:CDS | 30.0% | |
| TGAAATATTGATCCATTCCT+TGG | - | chr4.1:101541-101560 | MS.gene047033:CDS | 30.0% | |
| ! | ACCTAAACAAAGCATTAGTT+TGG | + | chr4.1:101435-101454 | None:intergenic | 30.0% |
| ! | GAAACCATCAAAATTAGCTT+TGG | - | chr4.1:102700-102719 | MS.gene047033:intron | 30.0% |
| !! | AAATTAGCTTTGGTGGTTTA+AGG | - | chr4.1:102710-102729 | MS.gene047033:intron | 30.0% |
| !! | ACCAAACTAATGCTTTGTTT+AGG | - | chr4.1:101431-101450 | MS.gene047033:CDS | 30.0% |
| !! | ACTATCTTCTCAACTTTTTC+AGG | - | chr4.1:101981-102000 | MS.gene047033:CDS | 30.0% |
| !!! | TTTAAGGAGACTTGTTTTAG+AGG | - | chr4.1:102726-102745 | MS.gene047033:CDS | 30.0% |
| AACTATGTGATGTCCTTTGA+CGG | - | chr4.1:102544-102563 | MS.gene047033:intron | 35.0% | |
| AAGTTGAGAAGATAGTGCAA+TGG | + | chr4.1:101977-101996 | None:intergenic | 35.0% | |
| ATATTGATCCATTCCTTGGT+TGG | - | chr4.1:101545-101564 | MS.gene047033:CDS | 35.0% | |
| ATCTTATTGTTGCGTATCTC+TGG | + | chr4.1:102579-102598 | None:intergenic | 35.0% | |
| ATTGGTTGTGCAAAAGTTCA+TGG | - | chr4.1:102063-102082 | MS.gene047033:intron | 35.0% | |
| CAAATTAGCAAACTGAGGAT+AGG | - | chr4.1:102262-102281 | MS.gene047033:CDS | 35.0% | |
| CAATCTTATGAGAAGAGTCT+GGG | + | chr4.1:101714-101733 | None:intergenic | 35.0% | |
| GATTCATGGTCAAATGAAGA+TGG | - | chr4.1:102139-102158 | MS.gene047033:CDS | 35.0% | |
| TTGCTCAAATTAGCAAACTG+AGG | - | chr4.1:102257-102276 | MS.gene047033:CDS | 35.0% | |
| ! | ACCACCAAAGCTAATTTTGA+TGG | + | chr4.1:102707-102726 | None:intergenic | 35.0% |
| !! | ACCATCAAAATTAGCTTTGG+TGG | - | chr4.1:102703-102722 | MS.gene047033:intron | 35.0% |
| !! | CAGTTTGCTAATTTGAGCAA+CGG | + | chr4.1:102257-102276 | None:intergenic | 35.0% |
| !! | GACTTTTGGTTGTTTTCTCT+GGG | - | chr4.1:102753-102772 | MS.gene047033:CDS | 35.0% |
| !! | TGACTTTTGGTTGTTTTCTC+TGG | - | chr4.1:102752-102771 | MS.gene047033:CDS | 35.0% |
| ATTGGAGACTGAAACTGAAG+AGG | + | chr4.1:101739-101758 | None:intergenic | 40.0% | |
| CCGGTTGTAATTGAAGAAGA+CGG | + | chr4.1:101269-101288 | None:intergenic | 40.0% | |
| CCGTCTTCTTCAATTACAAC+CGG | - | chr4.1:101266-101285 | MS.gene047033:CDS | 40.0% | |
| CGCAACAATAAGATCTAAGG+AGG | - | chr4.1:102585-102604 | MS.gene047033:intron | 40.0% | |
| CTTCAGTTTCAGTCTCCAAT+CGG | - | chr4.1:101739-101758 | MS.gene047033:CDS | 40.0% | |
| GCAATCTTATGAGAAGAGTC+TGG | + | chr4.1:101715-101734 | None:intergenic | 40.0% | |
| GGAAGAGATCTTGTACACAT+TGG | - | chr4.1:102045-102064 | MS.gene047033:intron | 40.0% | |
| GGGGGCAATTGATTATTCAA+AGG | - | chr4.1:102675-102694 | MS.gene047033:intron | 40.0% | |
| GTGCTTCTCAATAATGCTCA+CGG | + | chr4.1:102611-102630 | None:intergenic | 40.0% | |
| GTTGTAATTCCAGCAACTAG+TGG | + | chr4.1:101413-101432 | None:intergenic | 40.0% | |
| GTTGTAATTGAAGAAGACGG+CGG | + | chr4.1:101266-101285 | None:intergenic | 40.0% | |
| TAGAAGGAGGAAAGTGAAGA+AGG | + | chr4.1:101301-101320 | None:intergenic | 40.0% | |
| TATGCAGCATCAGTGATGTA+TGG | - | chr4.1:102292-102311 | MS.gene047033:CDS | 40.0% | |
| TATTGTTGCGTATCTCTGGA+GGG | + | chr4.1:102575-102594 | None:intergenic | 40.0% | |
| TGAGAAAGAAACTGACCGAT+TGG | + | chr4.1:101757-101776 | None:intergenic | 40.0% | |
| TGAGATGATCCAAAACCACT+TGG | - | chr4.1:102195-102214 | MS.gene047033:CDS | 40.0% | |
| TGATGAATACTACTGTCGTC+TGG | + | chr4.1:102385-102404 | None:intergenic | 40.0% | |
| TTATTGTTGCGTATCTCTGG+AGG | + | chr4.1:102576-102595 | None:intergenic | 40.0% | |
| TTTGCTAATTTGAGCAACGG+AGG | + | chr4.1:102254-102273 | None:intergenic | 40.0% | |
| ! | CATTATTGAGAAGCACACAG+AGG | - | chr4.1:102615-102634 | MS.gene047033:intron | 40.0% |
| ! | CTCATCCTGAAGTATCTACT+TGG | - | chr4.1:102461-102480 | MS.gene047033:intron | 40.0% |
| ! | TTCAGGATGAGATGTCACTT+GGG | + | chr4.1:102452-102471 | None:intergenic | 40.0% |
| ! | TTCTTAAGCGAGTTGACCAA+AGG | - | chr4.1:102320-102339 | MS.gene047033:CDS | 40.0% |
| !!! | CTTTTTCAGGAGAATTGCTG+AGG | - | chr4.1:101994-102013 | MS.gene047033:CDS | 40.0% |
| !!! | GAGAAGGATCTTGGTTTTGT+TGG | + | chr4.1:101867-101886 | None:intergenic | 40.0% |
| !!! | GTTTTAGAGGCTGTGACTTT+TGG | - | chr4.1:102739-102758 | MS.gene047033:CDS | 40.0% |
| AAATGAAAGGAGGACAGCTC+TGG | - | chr4.1:102024-102043 | MS.gene047033:CDS | 45.0% | |
| AAGCATGAGAGACTCTCTGT+TGG | - | chr4.1:101601-101620 | MS.gene047033:CDS | 45.0% | |
| AAGGAGGAAAGTGAAGAAGG+CGG | + | chr4.1:101298-101317 | None:intergenic | 45.0% | |
| AATGGTTATCACACGTGAGG+GGG | - | chr4.1:102657-102676 | MS.gene047033:intron | 45.0% | |
| ACATAGTTACGCAACCTGGT+CGG | + | chr4.1:102532-102551 | None:intergenic | 45.0% | |
| AGGTCAAGGCAAATGAAAGG+AGG | - | chr4.1:102014-102033 | MS.gene047033:CDS | 45.0% | |
| AGTCTCTCATGCTTATGCCT+AGG | + | chr4.1:101595-101614 | None:intergenic | 45.0% | |
| ATACCATAGCCAAATCCACC+AGG | + | chr4.1:102505-102524 | None:intergenic | 45.0% | |
| ATGTGGTAGGAGAAGGATCT+TGG | + | chr4.1:101876-101895 | None:intergenic | 45.0% | |
| ATTGTGGATGATGCAAGACC+TGG | - | chr4.1:102409-102428 | MS.gene047033:CDS | 45.0% | |
| ATTGTTTGGAAGACCCGGAA+TGG | - | chr4.1:102639-102658 | MS.gene047033:intron | 45.0% | |
| CAAAACAAGATCGGTGGATG+TGG | + | chr4.1:101893-101912 | None:intergenic | 45.0% | |
| CATCACATAGTTACGCAACC+TGG | + | chr4.1:102536-102555 | None:intergenic | 45.0% | |
| CCTGTACAAAACAAGATCGG+TGG | + | chr4.1:101899-101918 | None:intergenic | 45.0% | |
| CTCACGTGTGATAACCATTC+CGG | + | chr4.1:102656-102675 | None:intergenic | 45.0% | |
| CTGAGGTCAAGGCAAATGAA+AGG | - | chr4.1:102011-102030 | MS.gene047033:CDS | 45.0% | |
| CTTCAGGATGAGATGTCACT+TGG | + | chr4.1:102453-102472 | None:intergenic | 45.0% | |
| GAATGGTTATCACACGTGAG+GGG | - | chr4.1:102656-102675 | MS.gene047033:intron | 45.0% | |
| GAGCAACATCACGATCAGAT+TGG | + | chr4.1:101840-101859 | None:intergenic | 45.0% | |
| GGAATGGTTATCACACGTGA+GGG | - | chr4.1:102655-102674 | MS.gene047033:intron | 45.0% | |
| GTCTCTCATGCTTATGCCTA+GGG | + | chr4.1:101594-101613 | None:intergenic | 45.0% | |
| TACCAAGAATGAGAGCCAAG+TGG | + | chr4.1:102213-102232 | None:intergenic | 45.0% | |
| TCACGTGTGATAACCATTCC+GGG | + | chr4.1:102655-102674 | None:intergenic | 45.0% | |
| TCATGCTTATGCCTAGGGAT+GGG | + | chr4.1:101589-101608 | None:intergenic | 45.0% | |
| TCTATAACCCCAGATGCAAC+TGG | - | chr4.1:102109-102128 | MS.gene047033:intron | 45.0% | |
| TGATCCATTCCTTGGTTGGT+AGG | - | chr4.1:101549-101568 | MS.gene047033:CDS | 45.0% | |
| TTATGAGAAGAGTCTGGGTC+TGG | + | chr4.1:101709-101728 | None:intergenic | 45.0% | |
| ! | AACCACTTGGCTCTCATTCT+TGG | - | chr4.1:102208-102227 | MS.gene047033:CDS | 45.0% |
| ! | AGTTGCATCTGGGGTTATAG+AGG | + | chr4.1:102110-102129 | None:intergenic | 45.0% |
| ! | CTCATTCTTGGTAACAGAGC+AGG | - | chr4.1:102220-102239 | MS.gene047033:CDS | 45.0% |
| ! | GAATGAGAGCCAAGTGGTTT+TGG | + | chr4.1:102207-102226 | None:intergenic | 45.0% |
| ! | GTTGCATCTGGGGTTATAGA+GGG | + | chr4.1:102109-102128 | None:intergenic | 45.0% |
| ! | TGATTGTTGTTGCTTGCTGC+TGG | - | chr4.1:101371-101390 | MS.gene047033:CDS | 45.0% |
| !! | AAGCACACAGAGGCATTGTT+TGG | - | chr4.1:102625-102644 | MS.gene047033:intron | 45.0% |
| !!! | CCACCGATCTTGTTTTGTAC+AGG | - | chr4.1:101896-101915 | MS.gene047033:CDS | 45.0% |
| AACCCCAGATGCAACTGGTA+GGG | - | chr4.1:102114-102133 | MS.gene047033:intron | 50.0% | |
| AAGACGGCGGTGATAAGAAG+AGG | + | chr4.1:101253-101272 | None:intergenic | 50.0% | |
| AAGTGCACACCTACCAACCA+AGG | + | chr4.1:101561-101580 | None:intergenic | 50.0% | |
| ACAAGATCGGTGGATGTGGT+AGG | + | chr4.1:101889-101908 | None:intergenic | 50.0% | |
| ACTTCTCCAGCTGGAACCTT+TGG | + | chr4.1:102339-102358 | None:intergenic | 50.0% | |
| AGTTGACCAAAGGTTCCAGC+TGG | - | chr4.1:102330-102349 | MS.gene047033:CDS | 50.0% | |
| ATTGGAGCTGGAGAAGTTGC+TGG | + | chr4.1:101822-101841 | None:intergenic | 50.0% | |
| CACACCTACCAACCAAGGAA+TGG | + | chr4.1:101556-101575 | None:intergenic | 50.0% | |
| CAGGAGAATTGCTGAGGTCA+AGG | - | chr4.1:102000-102019 | MS.gene047033:CDS | 50.0% | |
| CATCACGATCAGATTGGAGC+TGG | + | chr4.1:101834-101853 | None:intergenic | 50.0% | |
| CATGCTTATGCCTAGGGATG+GGG | + | chr4.1:101588-101607 | None:intergenic | 50.0% | |
| CCAGGCCAAGTAGATACTTC+AGG | + | chr4.1:102469-102488 | None:intergenic | 50.0% | |
| CGGAATGGTTATCACACGTG+AGG | - | chr4.1:102654-102673 | MS.gene047033:intron | 50.0% | |
| CTCATGCTTATGCCTAGGGA+TGG | + | chr4.1:101590-101609 | None:intergenic | 50.0% | |
| GCTATGGTATAAAGCCGACC+AGG | - | chr4.1:102515-102534 | MS.gene047033:intron | 50.0% | |
| TAACCCCAGATGCAACTGGT+AGG | - | chr4.1:102113-102132 | MS.gene047033:intron | 50.0% | |
| TAGCAAACTGAGGATAGGGC+AGG | - | chr4.1:102267-102286 | MS.gene047033:CDS | 50.0% | |
| TGATAAGAAGAGGACGGCTG+TGG | + | chr4.1:101243-101262 | None:intergenic | 50.0% | |
| ! | CAACTGGTAGGGTCGATTCA+TGG | - | chr4.1:102125-102144 | MS.gene047033:intron | 50.0% |
| ! | CCTGAAGTATCTACTTGGCC+TGG | - | chr4.1:102466-102485 | MS.gene047033:intron | 50.0% |
| ! | GAAGTATCTACTTGGCCTGG+TGG | - | chr4.1:102469-102488 | MS.gene047033:intron | 50.0% |
| ! | GAAGTGTCCACTTCACTACC+AGG | + | chr4.1:102430-102449 | None:intergenic | 50.0% |
| ! | TGCAAGACCTGGTAGTGAAG+TGG | - | chr4.1:102420-102439 | MS.gene047033:CDS | 50.0% |
| !! | AGTCCTGGTGGATTTGGCTA+TGG | - | chr4.1:102499-102518 | MS.gene047033:intron | 50.0% |
| !! | CTTTCATCGACTTCTCCAGC+TGG | + | chr4.1:102348-102367 | None:intergenic | 50.0% |
| !! | GAGGCATTGTTTGGAAGACC+CGG | - | chr4.1:102634-102653 | MS.gene047033:intron | 50.0% |
| !! | GATGTCAGTCCTGGTGGATT+TGG | - | chr4.1:102493-102512 | MS.gene047033:intron | 50.0% |
| AGGAAAGTGAAGAAGGCGGC+AGG | + | chr4.1:101294-101313 | None:intergenic | 55.0% | |
| CGACCCTACCAGTTGCATCT+GGG | + | chr4.1:102120-102139 | None:intergenic | 55.0% | |
| CGGCGGTGATAAGAAGAGGA+CGG | + | chr4.1:101249-101268 | None:intergenic | 55.0% | |
| CTGGGATGTTGAGAGCTACG+TGG | - | chr4.1:102771-102790 | MS.gene047033:CDS | 55.0% | |
| CTTATGCCTAGGGATGGGGA+CGG | + | chr4.1:101584-101603 | None:intergenic | 55.0% | |
| GACCCTACCAGTTGCATCTG+GGG | + | chr4.1:102119-102138 | None:intergenic | 55.0% | |
| TCGACCCTACCAGTTGCATC+TGG | + | chr4.1:102121-102140 | None:intergenic | 55.0% | |
| TCGGTGGATGTGGTAGGAGA+AGG | + | chr4.1:101883-101902 | None:intergenic | 55.0% | |
| TTGAGAGCTACGTGGACTCG+AGG | - | chr4.1:102779-102798 | MS.gene047033:CDS | 55.0% | |
| !! | CTGGAGGGTATCACCGTCAA+AGG | + | chr4.1:102560-102579 | None:intergenic | 55.0% |
| ACCGCAGCAGGCACAAGATG+GGG | + | chr4.1:101796-101815 | None:intergenic | 60.0% | |
| AGAAGAGTCTGGGTCTGGCG+AGG | + | chr4.1:101704-101723 | None:intergenic | 60.0% | |
| CACCGCAGCAGGCACAAGAT+GGG | + | chr4.1:101797-101816 | None:intergenic | 60.0% | |
| GTGAAGAAGGCGGCAGGATC+CGG | + | chr4.1:101288-101307 | None:intergenic | 60.0% | |
| AGAGTCTGGGTCTGGCGAGG+AGG | + | chr4.1:101701-101720 | None:intergenic | 65.0% | |
| AGTTGCTGGTCCACCGCAGC+AGG | + | chr4.1:101808-101827 | None:intergenic | 65.0% | |
| CCACCGCAGCAGGCACAAGA+TGG | + | chr4.1:101798-101817 | None:intergenic | 65.0% | |
| CCAGGACTGACATCGCCACC+AGG | + | chr4.1:102487-102506 | None:intergenic | 65.0% | |
| CCATCTTGTGCCTGCTGCGG+TGG | - | chr4.1:101795-101814 | MS.gene047033:CDS | 65.0% | |
| CCCCCATCTTGTGCCTGCTG+CGG | - | chr4.1:101792-101811 | MS.gene047033:CDS | 65.0% | |
| CCGCAGCAGGCACAAGATGG+GGG | + | chr4.1:101795-101814 | None:intergenic | 65.0% | |
| GCACTTCCGTCCCCATCCCT+AGG | - | chr4.1:101575-101594 | MS.gene047033:CDS | 65.0% | |
| GGTGGCGATGTCAGTCCTGG+TGG | - | chr4.1:102487-102506 | MS.gene047033:intron | 65.0% | |
| TGGGTCTGGCGAGGAGGAAG+AGG | + | chr4.1:101695-101714 | None:intergenic | 65.0% | |
| ! | CCTGGTGGCGATGTCAGTCC+TGG | - | chr4.1:102484-102503 | MS.gene047033:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 101227 | 102822 | 101227 | ID=MS.gene047033 |
| chr4.1 | mRNA | 101227 | 102822 | 101227 | ID=MS.gene047033.t1;Parent=MS.gene047033 |
| chr4.1 | exon | 102721 | 102822 | 102721 | ID=MS.gene047033.t1.exon1;Parent=MS.gene047033.t1 |
| chr4.1 | CDS | 102721 | 102822 | 102721 | ID=cds.MS.gene047033.t1;Parent=MS.gene047033.t1 |
| chr4.1 | exon | 102132 | 102478 | 102132 | ID=MS.gene047033.t1.exon2;Parent=MS.gene047033.t1 |
| chr4.1 | CDS | 102132 | 102478 | 102132 | ID=cds.MS.gene047033.t1;Parent=MS.gene047033.t1 |
| chr4.1 | exon | 101227 | 102046 | 101227 | ID=MS.gene047033.t1.exon3;Parent=MS.gene047033.t1 |
| chr4.1 | CDS | 101227 | 102046 | 101227 | ID=cds.MS.gene047033.t1;Parent=MS.gene047033.t1 |
| Gene Sequence |
| Protein sequence |
