AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047461

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047461.t1 MTR_2g019230 97.037 405 12 0 1 405 1 405 0.0 820
MS.gene047461.t1 MTR_3g108860 33.880 366 214 7 42 405 7 346 1.03e-66 216
MS.gene047461.t1 MTR_4g114110 33.566 286 175 8 44 325 73 347 2.58e-42 154
MS.gene047461.t1 MTR_8g085600 31.834 289 182 8 49 333 74 351 3.32e-38 143
MS.gene047461.t1 MTR_3g073640 27.536 345 178 12 52 330 43 381 5.85e-31 124
MS.gene047461.t1 MTR_8g030940 30.031 323 205 11 51 364 24 334 5.99e-30 119
MS.gene047461.t1 MTR_2g008440 28.205 351 171 13 52 330 43 384 1.32e-29 120
MS.gene047461.t1 MTR_8g080370 30.263 304 186 9 45 334 34 325 1.53e-28 115
MS.gene047461.t1 MTR_3g085570 27.541 305 205 8 33 334 18 309 1.05e-23 101
MS.gene047461.t1 MTR_3g094850 30.272 294 176 11 52 338 9 280 8.12e-23 99.0
MS.gene047461.t1 MTR_2g094093 26.377 345 230 9 50 386 18 346 1.03e-20 93.2
MS.gene047461.t1 MTR_8g085650 30.357 224 140 4 52 262 7 227 9.53e-19 87.0
MS.gene047461.t1 MTR_1330s0010 23.120 359 226 12 12 354 80 404 4.87e-17 82.8
MS.gene047461.t1 MTR_0345s0010 23.120 359 226 12 12 354 67 391 5.32e-17 82.8
MS.gene047461.t1 MTR_0105s0170 23.120 359 226 12 12 354 80 404 1.05e-16 82.0
MS.gene047461.t1 MTR_0105s0040 23.120 359 226 12 12 354 165 489 1.19e-16 82.0
MS.gene047461.t1 MTR_0105s0130 23.120 359 226 12 12 354 67 391 1.78e-16 81.3
MS.gene047461.t1 MTR_7g095220 29.954 217 135 7 52 258 4 213 2.32e-16 80.1
MS.gene047461.t1 MTR_6g023805 24.662 296 196 9 53 333 57 340 2.87e-16 80.5
MS.gene047461.t1 MTR_0105s0020 22.563 359 228 12 12 354 67 391 4.17e-16 80.1
MS.gene047461.t1 MTR_0496s0010 21.907 388 259 13 15 378 25 392 1.27e-15 78.6
MS.gene047461.t1 MTR_4g022260 21.693 378 253 12 15 366 25 385 7.02e-14 73.2
MS.gene047461.t1 MTR_4g108280 22.191 356 241 12 44 379 23 362 2.77e-13 71.2
MS.gene047461.t1 MTR_7g029290 23.256 301 206 9 46 333 43 331 1.39e-11 66.2
MS.gene047461.t1 MTR_7g070320 32.192 146 93 5 156 299 526 667 2.48e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047461.t1 AT1G30090 68.227 406 120 2 1 405 1 398 0.0 597
MS.gene047461.t1 AT2G24540 37.433 374 217 9 35 404 11 371 3.43e-83 259
MS.gene047461.t1 AT1G55270 32.975 279 178 7 49 326 75 345 2.21e-41 151
MS.gene047461.t1 AT1G22040 30.233 344 169 13 52 330 43 380 2.96e-34 133
MS.gene047461.t1 AT1G67480 32.069 290 186 6 42 328 29 310 1.87e-33 129
MS.gene047461.t1 AT1G67480 32.069 290 186 6 42 328 29 310 1.87e-33 129
MS.gene047461.t1 AT1G67480 32.069 290 186 6 42 328 29 310 1.87e-33 129
MS.gene047461.t1 AT1G27420 26.087 322 185 9 51 372 9 277 5.22e-25 105
MS.gene047461.t1 AT1G55270 29.464 224 150 6 104 326 3 219 6.46e-22 95.9
MS.gene047461.t1 AT5G60570 27.365 296 193 7 45 332 39 320 3.98e-21 94.7
MS.gene047461.t1 AT5G60570 27.365 296 193 7 45 332 39 320 3.98e-21 94.7
MS.gene047461.t1 AT5G60570 27.365 296 193 7 45 332 39 320 3.98e-21 94.7
MS.gene047461.t1 AT3G63220 28.472 288 173 10 52 328 11 276 9.47e-20 90.1
MS.gene047461.t1 AT3G63220 28.472 288 173 10 52 328 11 276 9.47e-20 90.1
MS.gene047461.t1 AT3G63220 28.472 288 173 10 52 328 4 269 1.06e-19 90.1
MS.gene047461.t1 AT1G16250 27.530 247 162 7 49 285 5 244 1.17e-18 87.4
MS.gene047461.t1 AT1G16250 27.530 247 162 7 49 285 5 244 1.17e-18 87.4
MS.gene047461.t1 AT3G61350 22.956 318 219 11 52 361 21 320 2.70e-18 85.9
MS.gene047461.t1 AT3G61350 22.956 318 219 11 52 361 21 320 2.70e-18 85.9
MS.gene047461.t1 AT2G21950 27.303 304 194 11 52 344 20 307 2.64e-17 83.2
MS.gene047461.t1 AT4G39580 25.874 286 184 10 56 330 26 294 7.35e-15 75.9
MS.gene047461.t1 AT3G27150 24.483 290 198 7 53 333 71 348 7.71e-14 73.2
MS.gene047461.t1 AT3G27150 24.483 290 198 7 53 333 71 348 7.71e-14 73.2
MS.gene047461.t1 AT1G26930 23.602 322 212 10 52 354 71 377 5.60e-13 70.5
MS.gene047461.t1 AT1G60570 25.342 292 189 11 49 328 17 291 1.11e-12 69.3
MS.gene047461.t1 AT1G80440 29.279 222 143 7 52 262 3 221 6.26e-11 63.9

Find 120 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCCTCACAACTTTCTTT+TGG 0.176864 2.3:+67465744 None:intergenic
ATCAGGTAAGCCCGGAATTA+AGG 0.209782 2.3:+67466697 None:intergenic
GGTTCAAGCGTGGTTGTTTA+TGG 0.236597 2.3:-67465966 MS.gene047461:CDS
TAATTGTCTTCTTCGTCTTC+CGG 0.313205 2.3:-67466663 MS.gene047461:CDS
TTGTCCTTGCAAGGCATTGC+AGG 0.324010 2.3:+67466446 None:intergenic
TGTCGTAGGCCGGAATCTTC+TGG 0.330235 2.3:-67465796 MS.gene047461:CDS
AAGAAAGTTGTGAGGGGAAA+TGG 0.336256 2.3:-67465740 MS.gene047461:CDS
TGACACTATCTCCCAAGTTT+AGG 0.343062 2.3:-67466787 MS.gene047461:CDS
AGCCATAGTTTCCCAGCTAT+TGG 0.348050 2.3:+67466013 None:intergenic
TGCCAACATGGGAACCAATA+TGG 0.351045 2.3:-67466138 MS.gene047461:CDS
CTTCCCAGGAATCGGCTTCC+TGG 0.361899 2.3:+67465892 None:intergenic
AGGCAAAGGGGAGCCATCTA+TGG 0.368132 2.3:+67465869 None:intergenic
CCTCTAGGAGAGACATAAAA+AGG 0.369553 2.3:+67466056 None:intergenic
AGAGCTTGAAGGGGTCAAAT+TGG 0.369698 2.3:+67465671 None:intergenic
TAGATCCGATTAGCGGGAAT+TGG 0.370137 2.3:-67466169 MS.gene047461:CDS
AACCAATAGCTGGGAAACTA+TGG 0.377206 2.3:-67466015 MS.gene047461:CDS
GCGTGCCAATTCCCGCTAAT+CGG 0.383115 2.3:+67466164 None:intergenic
AGAGAAGAACCCTTAATTCC+GGG 0.383870 2.3:-67466707 MS.gene047461:CDS
AAGAGAAGAACCCTTAATTC+CGG 0.391873 2.3:-67466708 MS.gene047461:CDS
GTTCAGAACTGCAGCATCAT+AGG 0.399835 2.3:+67466112 None:intergenic
ATAACCAGGAAGCCGATTCC+TGG 0.405175 2.3:-67465896 MS.gene047461:CDS
GTTTCCCAGCTATTGGTTCT+CGG 0.422970 2.3:+67466020 None:intergenic
AGCATCATAGGATGCCATAT+TGG 0.428156 2.3:+67466124 None:intergenic
TCAGGTAAGCCCGGAATTAA+GGG 0.433050 2.3:+67466698 None:intergenic
TGCATATTTGCTCAGGCAAA+GGG 0.438541 2.3:+67465856 None:intergenic
GCTCGAAAGAATGAAGCTTA+AGG 0.440805 2.3:-67465922 MS.gene047461:CDS
TCACAAGCATTCACAGCAAA+AGG 0.445454 2.3:+67465831 None:intergenic
CAACAGCAACCAGAAGATTC+CGG 0.446885 2.3:+67465787 None:intergenic
TTATGTCTCTCCTAGAGGAC+AGG 0.451993 2.3:-67466051 MS.gene047461:CDS
TTTGACCCCTTCAAGCTCTC+AGG 0.453320 2.3:-67465667 MS.gene047461:CDS
AACCACCGCTAACCTAAACT+TGG 0.453592 2.3:+67466775 None:intergenic
AAAGGTTTGCATATTTGCTC+AGG 0.456311 2.3:+67465849 None:intergenic
CGTGGATTGTCCTCTTGACT+TGG 0.459145 2.3:-67466345 MS.gene047461:CDS
TTTGCATATCATAAGTGTAC+TGG 0.463348 2.3:-67466521 MS.gene047461:CDS
AAGGACAAGGTTTGTCCTCA+TGG 0.464137 2.3:-67466431 MS.gene047461:CDS
ATGATGCTGCAGTTCTGAAC+GGG 0.464281 2.3:-67466109 MS.gene047461:CDS
AAATGGGTTTCAAAGATCCT+TGG 0.469304 2.3:-67466553 MS.gene047461:CDS
ATCTATGGCTTCCCAGGAAT+CGG 0.471739 2.3:+67465884 None:intergenic
GATTCCTGGGAAGCCATAGA+TGG 0.472750 2.3:-67465882 MS.gene047461:CDS
CCTCTTGCAGACAGCCCTAC+AGG 0.472883 2.3:+67466625 None:intergenic
GTCAAATTTATGTCGTAGGC+CGG 0.477828 2.3:-67465806 MS.gene047461:CDS
ATCTCCCAAGTTTAGGTTAG+CGG 0.477981 2.3:-67466780 MS.gene047461:CDS
TACTGGAAAGATTCAATGGC+AGG 0.482203 2.3:-67466504 MS.gene047461:CDS
TTGTAACAGAAGGATGGTTA+TGG 0.483194 2.3:-67466079 MS.gene047461:CDS
CAATTAAGAGCAACATCATC+AGG 0.483657 2.3:+67466680 None:intergenic
CGGAATCTTCTGGTTGCTGT+TGG 0.483823 2.3:-67465786 MS.gene047461:CDS
GGAGCCATCTATGGCTTCCC+AGG 0.485903 2.3:+67465878 None:intergenic
TAGTACTGATCTTTATGAGC+TGG 0.486572 2.3:-67466207 MS.gene047461:CDS
ACGATCCGAGAACCAATAGC+TGG 0.496530 2.3:-67466025 MS.gene047461:CDS
TTTACTAATAGGAAGCAAAT+GGG 0.500450 2.3:-67466569 MS.gene047461:CDS
AATAGCACCTGAGAGCTTGA+AGG 0.504117 2.3:+67465660 None:intergenic
TTGCATATTTGCTCAGGCAA+AGG 0.504929 2.3:+67465855 None:intergenic
CTTGCAAGGCATTGCAGGGA+TGG 0.507543 2.3:+67466451 None:intergenic
AGCTGGGAAACTATGGCTGT+TGG 0.507613 2.3:-67466008 MS.gene047461:CDS
GATGGGATGGTTTATGCAGC+TGG 0.507844 2.3:-67466236 MS.gene047461:CDS
CAGGATGAATGACTTTGAAC+CGG 0.508558 2.3:+67466644 None:intergenic
TGCCATATTGGTTCCCATGT+TGG 0.508940 2.3:+67466136 None:intergenic
TGCAATGCCTTGCAAGGACA+AGG 0.510866 2.3:-67466444 MS.gene047461:CDS
ATGGGATGGTTTATGCAGCT+GGG 0.512009 2.3:-67466235 MS.gene047461:CDS
AGGTATTAGATCCGATTAGC+GGG 0.521082 2.3:-67466175 MS.gene047461:CDS
TTGGGAGATAGTGTCATTTG+AGG 0.521340 2.3:+67466794 None:intergenic
AATGGAACTTCAGTGTTCAA+TGG 0.527552 2.3:-67465722 MS.gene047461:CDS
AGTGTACTGGAAAGATTCAA+TGG 0.529957 2.3:-67466508 MS.gene047461:CDS
ATAGCACCTGAGAGCTTGAA+GGG 0.534517 2.3:+67465661 None:intergenic
GCTCAGAAACAACAAATAAG+TGG 0.537113 2.3:+67465943 None:intergenic
TAACCAGGAAGCCGATTCCT+GGG 0.538113 2.3:-67465895 MS.gene047461:CDS
CTTAGAGAATGATCTAACTC+TGG 0.539641 2.3:+67466728 None:intergenic
TTTGCCAGTGGAGTAATCGA+TGG 0.542803 2.3:-67466254 MS.gene047461:CDS
CAAGCACCGGTTCACAAGCT+AGG 0.543317 2.3:-67466821 MS.gene047461:CDS
TTGCCAGTGGAGTAATCGAT+GGG 0.543911 2.3:-67466253 MS.gene047461:CDS
AAGAGGTGGCATATGTTACT+TGG 0.546808 2.3:-67466608 MS.gene047461:CDS
GGACTTAGAGAAGGGTGGAC+TGG 0.550423 2.3:-67465987 MS.gene047461:CDS
GGATCACCTAGCTTGTGAAC+CGG 0.553072 2.3:+67466815 None:intergenic
TTGGCACGCTATTGCCAACA+TGG 0.553982 2.3:-67466150 MS.gene047461:CDS
GCAACATCATCAGGTAAGCC+CGG 0.556029 2.3:+67466689 None:intergenic
TCAAAGTCATTCATCCTGTA+GGG 0.557607 2.3:-67466639 MS.gene047461:CDS
GGATCGTAGACCTGTCCTCT+AGG 0.560032 2.3:+67466041 None:intergenic
CATCCCTGCAATGCCTTGCA+AGG 0.560526 2.3:-67466450 MS.gene047461:CDS
GATTGTCAAATTTATGTCGT+AGG 0.561359 2.3:-67465810 MS.gene047461:CDS
GAATGATCTAACTCTGGCAT+CGG 0.561877 2.3:+67466734 None:intergenic
CATCCCATCGATTACTCCAC+TGG 0.564791 2.3:+67466250 None:intergenic
TGTCCTTGCAAGGCATTGCA+GGG 0.566024 2.3:+67466447 None:intergenic
TCTTTACGTATGCGGTGGCA+TGG 0.567533 2.3:-67466375 MS.gene047461:CDS
AACCCAAAAGAAAGTTGTGA+GGG 0.567884 2.3:-67465747 MS.gene047461:CDS
TTCAAAGTCATTCATCCTGT+AGG 0.569327 2.3:-67466640 MS.gene047461:CDS
TATGATGCTGCAGTTCTGAA+CGG 0.569619 2.3:-67466110 MS.gene047461:CDS
GTAGGGCTGTCTGCAAGAGG+TGG 0.571680 2.3:-67466622 MS.gene047461:CDS
ATGGCTGTTGGACTTAGAGA+AGG 0.574595 2.3:-67465996 MS.gene047461:CDS
CCTGTAGGGCTGTCTGCAAG+AGG 0.578172 2.3:-67466625 MS.gene047461:CDS
CAGTGGAGTAATCGATGGGA+TGG 0.581579 2.3:-67466249 MS.gene047461:CDS
TGTTACTTGGTAGTAAAGAG+AGG 0.594306 2.3:-67466595 MS.gene047461:CDS
GGACAAACCTTGTCCTTGCA+AGG 0.597418 2.3:+67466437 None:intergenic
TGGGATGGTTTATGCAGCTG+GGG 0.601401 2.3:-67466234 MS.gene047461:CDS
GAAGCTTAAGGTTTATAACC+AGG 0.604476 2.3:-67465910 MS.gene047461:CDS
TCCCAAGTTTAGGTTAGCGG+TGG 0.605858 2.3:-67466777 MS.gene047461:CDS
TTATGAGCTGGATTCAGCTG+AGG 0.606127 2.3:-67466195 MS.gene047461:CDS
TATTTCAACACCAAGTCAAG+AGG 0.607388 2.3:+67466335 None:intergenic
CGGTGGCATGGTCTCTGACG+TGG 0.609464 2.3:-67466363 MS.gene047461:CDS
GAGGTATTAGATCCGATTAG+CGG 0.618113 2.3:-67466176 MS.gene047461:CDS
GGGAAACTGCTTGTAACAGA+AGG 0.619168 2.3:-67466089 MS.gene047461:CDS
CGATCCGAGAACCAATAGCT+GGG 0.621734 2.3:-67466024 MS.gene047461:CDS
TGGCTGTTGGACTTAGAGAA+GGG 0.623432 2.3:-67465995 MS.gene047461:CDS
AACTGCTTGTAACAGAAGGA+TGG 0.627353 2.3:-67466085 MS.gene047461:CDS
TGGCACGCTATTGCCAACAT+GGG 0.627378 2.3:-67466149 MS.gene047461:CDS
TGAATCGAATGATCAGTGCT+AGG 0.644133 2.3:-67466283 MS.gene047461:CDS
CTGTTGGACTTAGAGAAGGG+TGG 0.655252 2.3:-67465992 MS.gene047461:CDS
GGTAATCTTTACGTATGCGG+TGG 0.656082 2.3:-67466380 MS.gene047461:CDS
TGTGTTTCGATGCCTCACGA+TGG 0.656289 2.3:-67466401 MS.gene047461:CDS
ACCACCGCTAACCTAAACTT+GGG 0.656767 2.3:+67466776 None:intergenic
GCATATTTGCTCAGGCAAAG+GGG 0.660049 2.3:+67465857 None:intergenic
ACGTAAAGATTACCATCGTG+AGG 0.668276 2.3:+67466389 None:intergenic
AGGGTGGACTGGTTCAAGCG+TGG 0.672213 2.3:-67465976 MS.gene047461:CDS
GGGATGGTTTATGCAGCTGG+GGG 0.673599 2.3:-67466233 MS.gene047461:CDS
GAACCCAAAAGAAAGTTGTG+AGG 0.676488 2.3:-67465748 MS.gene047461:CDS
ACTGATCATTCGATTCATCA+CGG 0.677591 2.3:+67466289 None:intergenic
GGATGGTTTATGCAGCTGGG+GGG 0.678556 2.3:-67466232 MS.gene047461:CDS
ACCCAAAAGAAAGTTGTGAG+GGG 0.696628 2.3:-67465746 MS.gene047461:CDS
TAGCACCTGAGAGCTTGAAG+GGG 0.706757 2.3:+67465662 None:intergenic
GATGGTAATCTTTACGTATG+CGG 0.716864 2.3:-67466383 MS.gene047461:CDS
GAAACACACCGAAAACCATG+AGG 0.732405 2.3:+67466416 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTTACTAATAGGAAGCAAAT+GGG - chr2.3:67465932-67465951 MS.gene047461:CDS 25.0%
!! GTCAAATTGGATAAACTTTT+AGG + chr2.3:67466820-67466839 None:intergenic 25.0%
!! TTTTACTAATAGGAAGCAAA+TGG - chr2.3:67465931-67465950 MS.gene047461:CDS 25.0%
!!! AAGAGAGGTTTTTTACTAAT+AGG - chr2.3:67465921-67465940 MS.gene047461:CDS 25.0%
GATTGTCAAATTTATGTCGT+AGG - chr2.3:67466691-67466710 MS.gene047461:CDS 30.0%
TATGCAAATACAAAAAGCCA+AGG + chr2.3:67465968-67465987 None:intergenic 30.0%
TTTGCATATCATAAGTGTAC+TGG - chr2.3:67465980-67465999 MS.gene047461:CDS 30.0%
!! TTGATCTAACTCACTTTTCT+TGG - chr2.3:67466023-67466042 MS.gene047461:CDS 30.0%
AAAGGTTTGCATATTTGCTC+AGG + chr2.3:67466655-67466674 None:intergenic 35.0%
AACCCAAAAGAAAGTTGTGA+GGG - chr2.3:67466754-67466773 MS.gene047461:CDS 35.0%
AAGAGAAGAACCCTTAATTC+CGG - chr2.3:67465793-67465812 MS.gene047461:CDS 35.0%
AATGGAACTTCAGTGTTCAA+TGG - chr2.3:67466779-67466798 MS.gene047461:CDS 35.0%
ACTGATCATTCGATTCATCA+CGG + chr2.3:67466215-67466234 None:intergenic 35.0%
AGTGTACTGGAAAGATTCAA+TGG - chr2.3:67465993-67466012 MS.gene047461:CDS 35.0%
ATGAGATCACGAAAAATCGT+TGG - chr2.3:67466188-67466207 MS.gene047461:CDS 35.0%
CAATTAAGAGCAACATCATC+AGG + chr2.3:67465824-67465843 None:intergenic 35.0%
CTTAGAGAATGATCTAACTC+TGG + chr2.3:67465776-67465795 None:intergenic 35.0%
GAAGCTTAAGGTTTATAACC+AGG - chr2.3:67466591-67466610 MS.gene047461:CDS 35.0%
GATGGTAATCTTTACGTATG+CGG - chr2.3:67466118-67466137 MS.gene047461:CDS 35.0%
GCTCAGAAACAACAAATAAG+TGG + chr2.3:67466561-67466580 None:intergenic 35.0%
TAATTGTCTTCTTCGTCTTC+CGG - chr2.3:67465838-67465857 MS.gene047461:CDS 35.0%
TATTTCAACACCAAGTCAAG+AGG + chr2.3:67466169-67466188 None:intergenic 35.0%
TCAAAGTCATTCATCCTGTA+GGG - chr2.3:67465862-67465881 MS.gene047461:CDS 35.0%
TTCAAAGTCATTCATCCTGT+AGG - chr2.3:67465861-67465880 MS.gene047461:CDS 35.0%
TTGTAACAGAAGGATGGTTA+TGG - chr2.3:67466422-67466441 MS.gene047461:CDS 35.0%
! AAATGGGTTTCAAAGATCCT+TGG - chr2.3:67465948-67465967 MS.gene047461:CDS 35.0%
! TGTTACTTGGTAGTAAAGAG+AGG - chr2.3:67465906-67465925 MS.gene047461:CDS 35.0%
!! TAGTACTGATCTTTATGAGC+TGG - chr2.3:67466294-67466313 MS.gene047461:CDS 35.0%
!!! ACTTTCTTTTGGGTTCAGTA+TGG + chr2.3:67466749-67466768 None:intergenic 35.0%
AACCAATAGCTGGGAAACTA+TGG - chr2.3:67466486-67466505 MS.gene047461:CDS 40.0%
AACTGCTTGTAACAGAAGGA+TGG - chr2.3:67466416-67466435 MS.gene047461:CDS 40.0%
AAGAAAGTTGTGAGGGGAAA+TGG - chr2.3:67466761-67466780 MS.gene047461:CDS 40.0%
AAGAGGTGGCATATGTTACT+TGG - chr2.3:67465893-67465912 MS.gene047461:CDS 40.0%
ACCCAAAAGAAAGTTGTGAG+GGG - chr2.3:67466755-67466774 MS.gene047461:CDS 40.0%
ACGTAAAGATTACCATCGTG+AGG + chr2.3:67466115-67466134 None:intergenic 40.0%
AGAGAAGAACCCTTAATTCC+GGG - chr2.3:67465794-67465813 MS.gene047461:CDS 40.0%
AGCATCATAGGATGCCATAT+TGG + chr2.3:67466380-67466399 None:intergenic 40.0%
AGGTATTAGATCCGATTAGC+GGG - chr2.3:67466326-67466345 MS.gene047461:CDS 40.0%
CAGGATGAATGACTTTGAAC+CGG + chr2.3:67465860-67465879 None:intergenic 40.0%
GAACCCAAAAGAAAGTTGTG+AGG - chr2.3:67466753-67466772 MS.gene047461:CDS 40.0%
GAATGATCTAACTCTGGCAT+CGG + chr2.3:67465770-67465789 None:intergenic 40.0%
GCTCGAAAGAATGAAGCTTA+AGG - chr2.3:67466579-67466598 MS.gene047461:CDS 40.0%
GTCAAATTTATGTCGTAGGC+CGG - chr2.3:67466695-67466714 MS.gene047461:CDS 40.0%
TACTGGAAAGATTCAATGGC+AGG - chr2.3:67465997-67466016 MS.gene047461:CDS 40.0%
TCACAAGCATTCACAGCAAA+AGG + chr2.3:67466673-67466692 None:intergenic 40.0%
TGAATCGAATGATCAGTGCT+AGG - chr2.3:67466218-67466237 MS.gene047461:CDS 40.0%
TGACACTATCTCCCAAGTTT+AGG - chr2.3:67465714-67465733 MS.gene047461:CDS 40.0%
TGCATATTTGCTCAGGCAAA+GGG + chr2.3:67466648-67466667 None:intergenic 40.0%
TTGCATATTTGCTCAGGCAA+AGG + chr2.3:67466649-67466668 None:intergenic 40.0%
! AGGTTTGTCCTCATGGTTTT+CGG - chr2.3:67466077-67466096 MS.gene047461:CDS 40.0%
! ATCTCCCAAGTTTAGGTTAG+CGG - chr2.3:67465721-67465740 MS.gene047461:CDS 40.0%
! ATTTTCGTCTCAACAAGCAC+CGG - chr2.3:67465667-67465686 MS.gene047461:CDS 40.0%
! CCTCTAGGAGAGACATAAAA+AGG + chr2.3:67466448-67466467 None:intergenic 40.0%
! CCTTTTTATGTCTCTCCTAG+AGG - chr2.3:67466445-67466464 MS.gene047461:CDS 40.0%
! GAGGTATTAGATCCGATTAG+CGG - chr2.3:67466325-67466344 MS.gene047461:CDS 40.0%
! TCCCCTCACAACTTTCTTTT+GGG + chr2.3:67466759-67466778 None:intergenic 40.0%
! TTCCCCTCACAACTTTCTTT+TGG + chr2.3:67466760-67466779 None:intergenic 40.0%
!! TATGATGCTGCAGTTCTGAA+CGG - chr2.3:67466391-67466410 MS.gene047461:CDS 40.0%
!! TTGGGAGATAGTGTCATTTG+AGG + chr2.3:67465710-67465729 None:intergenic 40.0%
AACCACCGCTAACCTAAACT+TGG + chr2.3:67465729-67465748 None:intergenic 45.0%
AAGGACAAGGTTTGTCCTCA+TGG - chr2.3:67466070-67466089 MS.gene047461:CDS 45.0%
AATAGCACCTGAGAGCTTGA+AGG + chr2.3:67466844-67466863 None:intergenic 45.0%
ACCACCGCTAACCTAAACTT+GGG + chr2.3:67465728-67465747 None:intergenic 45.0%
AGAGCTTGAAGGGGTCAAAT+TGG + chr2.3:67466833-67466852 None:intergenic 45.0%
AGCCATAGTTTCCCAGCTAT+TGG + chr2.3:67466491-67466510 None:intergenic 45.0%
ATAGCACCTGAGAGCTTGAA+GGG + chr2.3:67466843-67466862 None:intergenic 45.0%
ATCAGGTAAGCCCGGAATTA+AGG + chr2.3:67465807-67465826 None:intergenic 45.0%
ATCTATGGCTTCCCAGGAAT+CGG + chr2.3:67466620-67466639 None:intergenic 45.0%
ATGGCTGTTGGACTTAGAGA+AGG - chr2.3:67466505-67466524 MS.gene047461:CDS 45.0%
ATGGGATGGTTTATGCAGCT+GGG - chr2.3:67466266-67466285 MS.gene047461:CDS 45.0%
CAACAGCAACCAGAAGATTC+CGG + chr2.3:67466717-67466736 None:intergenic 45.0%
GAAACACACCGAAAACCATG+AGG + chr2.3:67466088-67466107 None:intergenic 45.0%
GCATATTTGCTCAGGCAAAG+GGG + chr2.3:67466647-67466666 None:intergenic 45.0%
GGGAAACTGCTTGTAACAGA+AGG - chr2.3:67466412-67466431 MS.gene047461:CDS 45.0%
GGTAATCTTTACGTATGCGG+TGG - chr2.3:67466121-67466140 MS.gene047461:CDS 45.0%
GGTTCAAGCGTGGTTGTTTA+TGG - chr2.3:67466535-67466554 MS.gene047461:CDS 45.0%
GTTCAGAACTGCAGCATCAT+AGG + chr2.3:67466392-67466411 None:intergenic 45.0%
TAGATCCGATTAGCGGGAAT+TGG - chr2.3:67466332-67466351 MS.gene047461:CDS 45.0%
TCAGGTAAGCCCGGAATTAA+GGG + chr2.3:67465806-67465825 None:intergenic 45.0%
TGCCAACATGGGAACCAATA+TGG - chr2.3:67466363-67466382 MS.gene047461:CDS 45.0%
TGGCTGTTGGACTTAGAGAA+GGG - chr2.3:67466506-67466525 MS.gene047461:CDS 45.0%
TTATGAGCTGGATTCAGCTG+AGG - chr2.3:67466306-67466325 MS.gene047461:CDS 45.0%
TTATGTCTCTCCTAGAGGAC+AGG - chr2.3:67466450-67466469 MS.gene047461:CDS 45.0%
TTGCCAGTGGAGTAATCGAT+GGG - chr2.3:67466248-67466267 MS.gene047461:CDS 45.0%
TTTGCCAGTGGAGTAATCGA+TGG - chr2.3:67466247-67466266 MS.gene047461:CDS 45.0%
!! ATGATGCTGCAGTTCTGAAC+GGG - chr2.3:67466392-67466411 MS.gene047461:CDS 45.0%
!! GTTTCCCAGCTATTGGTTCT+CGG + chr2.3:67466484-67466503 None:intergenic 45.0%
!! TGCCATATTGGTTCCCATGT+TGG + chr2.3:67466368-67466387 None:intergenic 45.0%
!!! GCTAGGTCATTTTTTGCCAG+TGG - chr2.3:67466235-67466254 MS.gene047461:CDS 45.0%
ACGATCCGAGAACCAATAGC+TGG - chr2.3:67466476-67466495 MS.gene047461:CDS 50.0%
AGCTGGGAAACTATGGCTGT+TGG - chr2.3:67466493-67466512 MS.gene047461:CDS 50.0%
CAGTGGAGTAATCGATGGGA+TGG - chr2.3:67466252-67466271 MS.gene047461:CDS 50.0%
CGATCCGAGAACCAATAGCT+GGG - chr2.3:67466477-67466496 MS.gene047461:CDS 50.0%
CTGTTGGACTTAGAGAAGGG+TGG - chr2.3:67466509-67466528 MS.gene047461:CDS 50.0%
GATGGGATGGTTTATGCAGC+TGG - chr2.3:67466265-67466284 MS.gene047461:CDS 50.0%
GATTCCTGGGAAGCCATAGA+TGG - chr2.3:67466619-67466638 MS.gene047461:CDS 50.0%
GCAACATCATCAGGTAAGCC+CGG + chr2.3:67465815-67465834 None:intergenic 50.0%
GGACAAACCTTGTCCTTGCA+AGG + chr2.3:67466067-67466086 None:intergenic 50.0%
TAGCACCTGAGAGCTTGAAG+GGG + chr2.3:67466842-67466861 None:intergenic 50.0%
TCTTTACGTATGCGGTGGCA+TGG - chr2.3:67466126-67466145 MS.gene047461:CDS 50.0%
TGCAATGCCTTGCAAGGACA+AGG - chr2.3:67466057-67466076 MS.gene047461:CDS 50.0%
TGGCACGCTATTGCCAACAT+GGG - chr2.3:67466352-67466371 MS.gene047461:CDS 50.0%
TGGGATGGTTTATGCAGCTG+GGG - chr2.3:67466267-67466286 MS.gene047461:CDS 50.0%
TGTGTTTCGATGCCTCACGA+TGG - chr2.3:67466100-67466119 MS.gene047461:CDS 50.0%
TTGGCACGCTATTGCCAACA+TGG - chr2.3:67466351-67466370 MS.gene047461:CDS 50.0%
TTTGACCCCTTCAAGCTCTC+AGG - chr2.3:67466834-67466853 MS.gene047461:CDS 50.0%
! ATAACCAGGAAGCCGATTCC+TGG - chr2.3:67466605-67466624 MS.gene047461:CDS 50.0%
! CATCCCATCGATTACTCCAC+TGG + chr2.3:67466254-67466273 None:intergenic 50.0%
! CGGAATCTTCTGGTTGCTGT+TGG - chr2.3:67466715-67466734 MS.gene047461:CDS 50.0%
! CGTGGATTGTCCTCTTGACT+TGG - chr2.3:67466156-67466175 MS.gene047461:CDS 50.0%
! GGATCACCTAGCTTGTGAAC+CGG + chr2.3:67465689-67465708 None:intergenic 50.0%
! TAACCAGGAAGCCGATTCCT+GGG - chr2.3:67466606-67466625 MS.gene047461:CDS 50.0%
! TCCCAAGTTTAGGTTAGCGG+TGG - chr2.3:67465724-67465743 MS.gene047461:CDS 50.0%
!! TGTCCTTGCAAGGCATTGCA+GGG + chr2.3:67466057-67466076 None:intergenic 50.0%
!! TTGTCCTTGCAAGGCATTGC+AGG + chr2.3:67466058-67466077 None:intergenic 50.0%
AGGCAAAGGGGAGCCATCTA+TGG + chr2.3:67466635-67466654 None:intergenic 55.0%
CATCCCTGCAATGCCTTGCA+AGG - chr2.3:67466051-67466070 MS.gene047461:CDS 55.0%
GCGTGCCAATTCCCGCTAAT+CGG + chr2.3:67466340-67466359 None:intergenic 55.0%
GGACTTAGAGAAGGGTGGAC+TGG - chr2.3:67466514-67466533 MS.gene047461:CDS 55.0%
GGATCGTAGACCTGTCCTCT+AGG + chr2.3:67466463-67466482 None:intergenic 55.0%
GGATGGTTTATGCAGCTGGG+GGG - chr2.3:67466269-67466288 MS.gene047461:CDS 55.0%
GGGATGGTTTATGCAGCTGG+GGG - chr2.3:67466268-67466287 MS.gene047461:CDS 55.0%
TGTCGTAGGCCGGAATCTTC+TGG - chr2.3:67466705-67466724 MS.gene047461:CDS 55.0%
!! CAAGCACCGGTTCACAAGCT+AGG - chr2.3:67465680-67465699 MS.gene047461:CDS 55.0%
!! CTTGCAAGGCATTGCAGGGA+TGG + chr2.3:67466053-67466072 None:intergenic 55.0%
CCTCTTGCAGACAGCCCTAC+AGG + chr2.3:67465879-67465898 None:intergenic 60.0%
CCTGTAGGGCTGTCTGCAAG+AGG - chr2.3:67465876-67465895 MS.gene047461:CDS 60.0%
GGAGCCATCTATGGCTTCCC+AGG + chr2.3:67466626-67466645 None:intergenic 60.0%
GTAGGGCTGTCTGCAAGAGG+TGG - chr2.3:67465879-67465898 MS.gene047461:CDS 60.0%
! CTTCCCAGGAATCGGCTTCC+TGG + chr2.3:67466612-67466631 None:intergenic 60.0%
!! AGGGTGGACTGGTTCAAGCG+TGG - chr2.3:67466525-67466544 MS.gene047461:CDS 60.0%
CGGTGGCATGGTCTCTGACG+TGG - chr2.3:67466138-67466157 MS.gene047461:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 67465653 67466870 67465653 ID=MS.gene047461
chr2.3 mRNA 67465653 67466870 67465653 ID=MS.gene047461.t1;Parent=MS.gene047461
chr2.3 exon 67465653 67466870 67465653 ID=MS.gene047461.t1.exon1;Parent=MS.gene047461.t1
chr2.3 CDS 67465653 67466870 67465653 ID=cds.MS.gene047461.t1;Parent=MS.gene047461.t1
Gene Sequence

>MS.gene047461

ATGCAGCGTGTTAGATTTTCGTCTCAACAAGCACCGGTTCACAAGCTAGGTGATCCTCAAATGACACTATCTCCCAAGTTTAGGTTAGCGGTGGTTCAATCTAACTTGACGAGTCCGATGCCAGAGTTAGATCATTCTCTAAGAGAAGAACCCTTAATTCCGGGCTTACCTGATGATGTTGCTCTTAATTGTCTTCTTCGTCTTCCGGTTCAAAGTCATTCATCCTGTAGGGCTGTCTGCAAGAGGTGGCATATGTTACTTGGTAGTAAAGAGAGGTTTTTTACTAATAGGAAGCAAATGGGTTTCAAAGATCCTTGGCTTTTTGTATTTGCATATCATAAGTGTACTGGAAAGATTCAATGGCAGGTTTTTGATCTAACTCACTTTTCTTGGCACACCATCCCTGCAATGCCTTGCAAGGACAAGGTTTGTCCTCATGGTTTTCGGTGTGTTTCGATGCCTCACGATGGTAATCTTTACGTATGCGGTGGCATGGTCTCTGACGTGGATTGTCCTCTTGACTTGGTGTTGAAATATGAGATCACGAAAAATCGTTGGACCGTGATGAATCGAATGATCAGTGCTAGGTCATTTTTTGCCAGTGGAGTAATCGATGGGATGGTTTATGCAGCTGGGGGGAATAGTACTGATCTTTATGAGCTGGATTCAGCTGAGGTATTAGATCCGATTAGCGGGAATTGGCACGCTATTGCCAACATGGGAACCAATATGGCATCCTATGATGCTGCAGTTCTGAACGGGAAACTGCTTGTAACAGAAGGATGGTTATGGCCTTTTTATGTCTCTCCTAGAGGACAGGTCTACGATCCGAGAACCAATAGCTGGGAAACTATGGCTGTTGGACTTAGAGAAGGGTGGACTGGTTCAAGCGTGGTTGTTTATGGCCACTTATTTGTTGTTTCTGAGCTCGAAAGAATGAAGCTTAAGGTTTATAACCAGGAAGCCGATTCCTGGGAAGCCATAGATGGCTCCCCTTTGCCTGAGCAAATATGCAAACCTTTTGCTGTGAATGCTTGTGATTGTCAAATTTATGTCGTAGGCCGGAATCTTCTGGTTGCTGTTGGTCATATCTCCATACTGAACCCAAAAGAAAGTTGTGAGGGGAAATGGAACTTCAGTGTTCAATGGCAAGTAATTGACGCGCCTAAAAGTTTATCCAATTTGACCCCTTCAAGCTCTCAGGTGCTATTTGCATAG
Protein sequence

>MS.gene047461.t1

MQRVRFSSQQAPVHKLGDPQMTLSPKFRLAVVQSNLTSPMPELDHSLREEPLIPGLPDDVALNCLLRLPVQSHSSCRAVCKRWHMLLGSKERFFTNRKQMGFKDPWLFVFAYHKCTGKIQWQVFDLTHFSWHTIPAMPCKDKVCPHGFRCVSMPHDGNLYVCGGMVSDVDCPLDLVLKYEITKNRWTVMNRMISARSFFASGVIDGMVYAAGGNSTDLYELDSAEVLDPISGNWHAIANMGTNMASYDAAVLNGKLLVTEGWLWPFYVSPRGQVYDPRTNSWETMAVGLREGWTGSSVVVYGHLFVVSELERMKLKVYNQEADSWEAIDGSPLPEQICKPFAVNACDCQIYVVGRNLLVAVGHISILNPKESCEGKWNFSVQWQVIDAPKSLSNLTPSSSQVLFA