Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047739.t1 | XP_003611911.1 | 89.7 | 204 | 18 | 1 | 40 | 240 | 36 | 239 | 3.60E-101 | 377.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047739.t1 | Q5ZIR9 | 48.4 | 128 | 42 | 5 | 40 | 166 | 40 | 144 | 4.0e-24 | 113.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047739.t1 | G7KAV6 | 89.7 | 204 | 18 | 1 | 40 | 240 | 36 | 239 | 2.6e-101 | 377.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene047739 | MS.gene055526 | PPI |
MS.gene41663 | MS.gene047739 | PPI |
MS.gene013177 | MS.gene047739 | PPI |
MS.gene06250 | MS.gene047739 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047739.t1 | MTR_5g019300 | 91.358 | 243 | 14 | 3 | 1 | 240 | 1 | 239 | 7.14e-140 | 392 |
MS.gene047739.t1 | MTR_1g021895 | 58.294 | 211 | 76 | 6 | 35 | 238 | 26 | 231 | 1.52e-69 | 213 |
MS.gene047739.t1 | MTR_1g054210 | 51.724 | 87 | 41 | 1 | 39 | 124 | 122 | 208 | 4.42e-29 | 109 |
MS.gene047739.t1 | MTR_8g465910 | 42.400 | 125 | 60 | 3 | 20 | 132 | 25 | 149 | 2.49e-28 | 108 |
MS.gene047739.t1 | MTR_2g090330 | 50.000 | 90 | 40 | 2 | 37 | 121 | 28 | 117 | 3.14e-28 | 105 |
MS.gene047739.t1 | MTR_2g090330 | 50.000 | 90 | 40 | 2 | 37 | 121 | 31 | 120 | 5.22e-28 | 105 |
MS.gene047739.t1 | MTR_2g090325 | 49.000 | 100 | 34 | 2 | 20 | 119 | 11 | 93 | 5.58e-28 | 105 |
MS.gene047739.t1 | MTR_7g093390 | 51.087 | 92 | 43 | 1 | 34 | 125 | 165 | 254 | 3.18e-27 | 108 |
MS.gene047739.t1 | MTR_2g090295 | 42.373 | 118 | 56 | 3 | 10 | 119 | 15 | 128 | 6.87e-26 | 101 |
MS.gene047739.t1 | MTR_1g054260 | 41.085 | 129 | 62 | 3 | 13 | 127 | 57 | 185 | 1.33e-25 | 99.8 |
MS.gene047739.t1 | MTR_1g054280 | 51.190 | 84 | 38 | 3 | 39 | 120 | 76 | 158 | 3.88e-25 | 100 |
MS.gene047739.t1 | MTR_1g054465 | 39.850 | 133 | 62 | 4 | 5 | 119 | 13 | 145 | 4.35e-25 | 98.2 |
MS.gene047739.t1 | MTR_4g029440 | 45.455 | 88 | 47 | 1 | 39 | 125 | 126 | 213 | 7.37e-24 | 99.0 |
MS.gene047739.t1 | MTR_4g029440 | 45.455 | 88 | 47 | 1 | 39 | 125 | 132 | 219 | 7.63e-24 | 99.4 |
MS.gene047739.t1 | MTR_4g088875 | 45.918 | 98 | 42 | 3 | 39 | 125 | 31 | 128 | 2.24e-22 | 92.0 |
MS.gene047739.t1 | MTR_4g088870 | 40.351 | 114 | 56 | 3 | 24 | 125 | 15 | 128 | 2.76e-22 | 90.9 |
MS.gene047739.t1 | MTR_2g013550 | 45.833 | 96 | 42 | 3 | 39 | 125 | 27 | 121 | 4.67e-22 | 91.3 |
MS.gene047739.t1 | MTR_2g061230 | 39.773 | 88 | 52 | 1 | 39 | 125 | 107 | 194 | 5.89e-20 | 85.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047739.t1 | AT2G23780 | 62.673 | 217 | 71 | 6 | 27 | 238 | 16 | 227 | 6.63e-89 | 262 |
MS.gene047739.t1 | AT2G23780 | 62.673 | 217 | 71 | 6 | 27 | 238 | 16 | 227 | 6.63e-89 | 262 |
MS.gene047739.t1 | AT2G23780 | 62.673 | 217 | 71 | 6 | 27 | 238 | 16 | 227 | 6.63e-89 | 262 |
MS.gene047739.t1 | AT1G19310 | 57.212 | 208 | 80 | 5 | 21 | 222 | 5 | 209 | 3.22e-74 | 225 |
MS.gene047739.t1 | AT1G74990 | 50.746 | 134 | 61 | 4 | 27 | 157 | 4 | 135 | 3.42e-41 | 138 |
MS.gene047739.t1 | AT4G27470 | 45.283 | 106 | 44 | 3 | 34 | 128 | 37 | 139 | 3.04e-26 | 102 |
MS.gene047739.t1 | AT4G03510 | 47.423 | 97 | 39 | 2 | 31 | 119 | 38 | 130 | 1.38e-25 | 100 |
MS.gene047739.t1 | AT4G03510 | 47.423 | 97 | 39 | 2 | 31 | 119 | 38 | 130 | 1.38e-25 | 100 |
MS.gene047739.t1 | AT4G03510 | 47.423 | 97 | 39 | 2 | 31 | 119 | 38 | 130 | 1.38e-25 | 100 |
MS.gene047739.t1 | AT4G03510 | 47.423 | 97 | 39 | 2 | 31 | 119 | 38 | 130 | 1.38e-25 | 100 |
MS.gene047739.t1 | AT4G28270 | 47.917 | 96 | 31 | 4 | 37 | 119 | 17 | 106 | 2.31e-24 | 96.3 |
MS.gene047739.t1 | AT3G58030 | 44.944 | 89 | 46 | 2 | 39 | 127 | 137 | 222 | 1.56e-23 | 98.6 |
MS.gene047739.t1 | AT3G58030 | 44.944 | 89 | 46 | 2 | 39 | 127 | 137 | 222 | 1.56e-23 | 98.6 |
MS.gene047739.t1 | AT3G58030 | 44.944 | 89 | 46 | 2 | 39 | 127 | 137 | 222 | 1.56e-23 | 98.6 |
MS.gene047739.t1 | AT3G58030 | 44.944 | 89 | 46 | 2 | 39 | 127 | 137 | 222 | 1.56e-23 | 98.6 |
MS.gene047739.t1 | AT2G42030 | 44.828 | 87 | 45 | 2 | 39 | 125 | 139 | 222 | 3.42e-23 | 97.4 |
MS.gene047739.t1 | AT2G44410 | 40.659 | 91 | 51 | 2 | 37 | 125 | 121 | 210 | 8.64e-19 | 84.7 |
Find 74 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCAGGATGCTACTGTTTA+TGG | 0.167323 | 5.1:-11214622 | MS.gene047739:CDS |
GAGAAATTGGTGCCTCTTTA+TGG | 0.188488 | 5.1:-11214892 | MS.gene047739:CDS |
ATTTGGGTTCAACGGGTTTC+AGG | 0.247980 | 5.1:-11214581 | MS.gene047739:CDS |
TTTGTTGGCCATGTCTTTAT+AGG | 0.254637 | 5.1:-11214975 | MS.gene047739:CDS |
ACAACTTCTGGTTATCCATT+TGG | 0.261632 | 5.1:-11214598 | MS.gene047739:CDS |
ACTGTTTATGGGACAACTTC+TGG | 0.273010 | 5.1:-11214610 | MS.gene047739:CDS |
CAACTTCTGGTTATCCATTT+GGG | 0.287027 | 5.1:-11214597 | MS.gene047739:CDS |
ACTTGTTCAGGAAGAGAAAT+TGG | 0.291213 | 5.1:-11214905 | MS.gene047739:CDS |
CTTATGAATATACACTTTCA+TGG | 0.293268 | 5.1:-11214646 | MS.gene047739:CDS |
TACTGCTGGGATTGGATTGA+TGG | 0.307850 | 5.1:-11214746 | MS.gene047739:CDS |
AGAGAAATGTCTCGACGTTT+TGG | 0.313707 | 5.1:-11215159 | None:intergenic |
CTTTACAAACAGGACATTCT+TGG | 0.336132 | 5.1:+11214929 | None:intergenic |
CCCGGATATGATTTAGTTCT+CGG | 0.339322 | 5.1:+11214847 | None:intergenic |
AAGAATTTGCTTATGCTGAT+TGG | 0.345800 | 5.1:-11214490 | MS.gene047739:CDS |
GAGATTCCTCGCCGTCCTTC+CGG | 0.353413 | 5.1:-11214820 | MS.gene047739:CDS |
CCGATGGCTACTGCTAGATT+TGG | 0.354815 | 5.1:-11214712 | MS.gene047739:CDS |
TTCAGGATGCTACTGTTTAT+GGG | 0.361416 | 5.1:-11214621 | MS.gene047739:CDS |
CACGGTTTGCGGCCTCTGTC+CGG | 0.379672 | 5.1:+11214801 | None:intergenic |
TTGTTATGAGGTGGTGGATT+CGG | 0.380136 | 5.1:+11214778 | None:intergenic |
TCAAAATCGCCGACATCGCC+AGG | 0.399241 | 5.1:+11215057 | None:intergenic |
CCAAACCCATCATGTTCATC+AGG | 0.401623 | 5.1:-11215099 | MS.gene047739:CDS |
GGTTTCAATTCGCAAGCAAC+AGG | 0.415216 | 5.1:-11214544 | MS.gene047739:CDS |
TTTACAAACAGGACATTCTT+GGG | 0.417710 | 5.1:+11214930 | None:intergenic |
TTTGGGTTCAACGGGTTTCA+GGG | 0.418547 | 5.1:-11214580 | MS.gene047739:CDS |
TGAACAAGTGCTTTACAAAC+AGG | 0.427996 | 5.1:+11214919 | None:intergenic |
CCTGATGAACATGATGGGTT+TGG | 0.431554 | 5.1:+11215099 | None:intergenic |
TCCGAGAACTAAATCATATC+CGG | 0.436022 | 5.1:-11214848 | MS.gene047739:CDS |
TGTTTGTAAAGCACTTGTTC+AGG | 0.444996 | 5.1:-11214917 | MS.gene047739:CDS |
GGTGGATTCGGCACGGTTTG+CGG | 0.446057 | 5.1:+11214790 | None:intergenic |
AACAGGACATTCTTGGGAAT+GGG | 0.452683 | 5.1:+11214936 | None:intergenic |
GTTATCCATTTGGGTTCAAC+GGG | 0.454746 | 5.1:-11214588 | MS.gene047739:CDS |
TGAAACCCGTTGAACCCAAA+TGG | 0.458530 | 5.1:+11214583 | None:intergenic |
ACTGCTGGGATTGGATTGAT+GGG | 0.466877 | 5.1:-11214745 | MS.gene047739:CDS |
AAACAGGACATTCTTGGGAA+TGG | 0.467189 | 5.1:+11214935 | None:intergenic |
GGTTCAACGGGTTTCAGGGT+GGG | 0.474844 | 5.1:-11214576 | MS.gene047739:CDS |
GGTTATCCATTTGGGTTCAA+CGG | 0.476182 | 5.1:-11214589 | MS.gene047739:CDS |
TGGATTTCTAGTCCTTCTTA+CGG | 0.485784 | 5.1:-11214470 | MS.gene047739:CDS |
CTCCCATTGTTATGAGGTGG+TGG | 0.489584 | 5.1:+11214772 | None:intergenic |
GATGAACATGATGGGTTTGG+TGG | 0.500767 | 5.1:+11215102 | None:intergenic |
ATCCACCACCTCATAACAAT+GGG | 0.503935 | 5.1:-11214774 | MS.gene047739:CDS |
GTTGGCCATGTCTTTATAGG+TGG | 0.509894 | 5.1:-11214972 | MS.gene047739:CDS |
AACAGTTCCAACAATGATCC+TGG | 0.522277 | 5.1:-11215075 | MS.gene047739:CDS |
TTGGTGCCTCTTTATGGTAG+AGG | 0.523573 | 5.1:-11214886 | MS.gene047739:CDS |
AACAGGACAAGTGCAACGGC+AGG | 0.523959 | 5.1:-11214527 | MS.gene047739:CDS |
GTAAAACTCCCATTGTTATG+AGG | 0.528292 | 5.1:+11214766 | None:intergenic |
GCGGCCTCTGTCCGGAAGGA+CGG | 0.532356 | 5.1:+11214809 | None:intergenic |
CCGAGAACTAAATCATATCC+GGG | 0.533561 | 5.1:-11214847 | MS.gene047739:CDS |
GACATCGCCAGGATCATTGT+TGG | 0.534796 | 5.1:+11215068 | None:intergenic |
GATCCAGTGATCACACTTTG+TGG | 0.540983 | 5.1:-11215006 | MS.gene047739:CDS |
GCTGGGATTGGATTGATGGG+TGG | 0.551373 | 5.1:-11214742 | MS.gene047739:CDS |
GATGGGTGGATTTCTTCCGA+TGG | 0.553310 | 5.1:-11214728 | MS.gene047739:CDS |
AGTGTATATTCATAAGTGAC+GGG | 0.559818 | 5.1:+11214653 | None:intergenic |
TGACCACAAAGTGTGATCAC+TGG | 0.563476 | 5.1:+11215003 | None:intergenic |
AACTAAATCATATCCGGGGA+TGG | 0.569407 | 5.1:-11214842 | MS.gene047739:CDS |
AACAATGATCCTGGCGATGT+CGG | 0.571877 | 5.1:-11215066 | MS.gene047739:CDS |
TTTCAGGGTGGGAATGCGAG+AGG | 0.574157 | 5.1:-11214565 | MS.gene047739:CDS |
GTTTGCGGCCTCTGTCCGGA+AGG | 0.581142 | 5.1:+11214805 | None:intergenic |
CTGTTCCCTGATGAACATGA+TGG | 0.583916 | 5.1:+11215093 | None:intergenic |
AAGTGTATATTCATAAGTGA+CGG | 0.583974 | 5.1:+11214652 | None:intergenic |
GGGTTCAACGGGTTTCAGGG+TGG | 0.588862 | 5.1:-11214577 | MS.gene047739:CDS |
CGGCGAGGAATCTCCATCCC+CGG | 0.591217 | 5.1:+11214829 | None:intergenic |
CTCGCCGTCCTTCCGGACAG+AGG | 0.603395 | 5.1:-11214813 | MS.gene047739:CDS |
AATCCACCACCTCATAACAA+TGG | 0.610003 | 5.1:-11214775 | MS.gene047739:CDS |
ATGAGGTGGTGGATTCGGCA+CGG | 0.610340 | 5.1:+11214783 | None:intergenic |
AAGCAACAGGACAAGTGCAA+CGG | 0.621601 | 5.1:-11214531 | MS.gene047739:CDS |
CTCTGTCCGGAAGGACGGCG+AGG | 0.628222 | 5.1:+11214814 | None:intergenic |
AGGACAAGTGCAACGGCAGG+AGG | 0.631148 | 5.1:-11214524 | MS.gene047739:CDS |
AAACTCCCATTGTTATGAGG+TGG | 0.636988 | 5.1:+11214769 | None:intergenic |
CAAACCCATCATGTTCATCA+GGG | 0.650075 | 5.1:-11215098 | MS.gene047739:CDS |
CCAAATCTAGCAGTAGCCAT+CGG | 0.653472 | 5.1:+11214712 | None:intergenic |
TGGTAGAGGTAAAACGCAGA+CGG | 0.654255 | 5.1:-11214872 | MS.gene047739:CDS |
TGTTCCCTGATGAACATGAT+GGG | 0.680660 | 5.1:+11215094 | None:intergenic |
CGAGAACTAAATCATATCCG+GGG | 0.686552 | 5.1:-11214846 | MS.gene047739:CDS |
TGTAACCACCTATAAAGACA+TGG | 0.687496 | 5.1:+11214967 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATGTAACATATGTTTTGATT+TGG | - | chr5.1:11214572-11214591 | MS.gene047739:CDS | 20.0% |
! | AAGTGTATATTCATAAGTGA+CGG | + | chr5.1:11214957-11214976 | None:intergenic | 25.0% |
! | CTTATGAATATACACTTTCA+TGG | - | chr5.1:11214960-11214979 | MS.gene047739:CDS | 25.0% |
! | TAAAAAAGATAACCGTAAGA+AGG | + | chr5.1:11215151-11215170 | None:intergenic | 25.0% |
!!! | TTTGTGGTCATTTATTTTGT+TGG | - | chr5.1:11214616-11214635 | MS.gene047739:CDS | 25.0% |
AGTGTATATTCATAAGTGAC+GGG | + | chr5.1:11214956-11214975 | None:intergenic | 30.0% | |
TTTACAAACAGGACATTCTT+GGG | + | chr5.1:11214679-11214698 | None:intergenic | 30.0% | |
! | AAGAATTTGCTTATGCTGAT+TGG | - | chr5.1:11215116-11215135 | MS.gene047739:CDS | 30.0% |
! | TATACACTTTCATGGTTTTC+AGG | - | chr5.1:11214968-11214987 | MS.gene047739:CDS | 30.0% |
ACTTGTTCAGGAAGAGAAAT+TGG | - | chr5.1:11214701-11214720 | MS.gene047739:CDS | 35.0% | |
CTTTACAAACAGGACATTCT+TGG | + | chr5.1:11214680-11214699 | None:intergenic | 35.0% | |
GTAAAACTCCCATTGTTATG+AGG | + | chr5.1:11214843-11214862 | None:intergenic | 35.0% | |
TCCGAGAACTAAATCATATC+CGG | - | chr5.1:11214758-11214777 | MS.gene047739:CDS | 35.0% | |
TGAACAAGTGCTTTACAAAC+AGG | + | chr5.1:11214690-11214709 | None:intergenic | 35.0% | |
TGTAACCACCTATAAAGACA+TGG | + | chr5.1:11214642-11214661 | None:intergenic | 35.0% | |
TTCAGGATGCTACTGTTTAT+GGG | - | chr5.1:11214985-11215004 | MS.gene047739:CDS | 35.0% | |
TTTCAGGATGCTACTGTTTA+TGG | - | chr5.1:11214984-11215003 | MS.gene047739:CDS | 35.0% | |
TTTGTTGGCCATGTCTTTAT+AGG | - | chr5.1:11214631-11214650 | MS.gene047739:CDS | 35.0% | |
! | ACAACTTCTGGTTATCCATT+TGG | - | chr5.1:11215008-11215027 | MS.gene047739:CDS | 35.0% |
! | CAACTTCTGGTTATCCATTT+GGG | - | chr5.1:11215009-11215028 | MS.gene047739:CDS | 35.0% |
! | GTTTTACCTCTACCATAAAG+AGG | + | chr5.1:11214729-11214748 | None:intergenic | 35.0% |
! | TGGAAACTTTTCGTTTTCGA+CGG | - | chr5.1:11214914-11214933 | MS.gene047739:CDS | 35.0% |
! | TGTTTGTAAAGCACTTGTTC+AGG | - | chr5.1:11214689-11214708 | MS.gene047739:CDS | 35.0% |
!! | TGGATTTCTAGTCCTTCTTA+CGG | - | chr5.1:11215136-11215155 | MS.gene047739:CDS | 35.0% |
!!! | CATATGTTTTGATTTGGCAC+AGG | - | chr5.1:11214578-11214597 | MS.gene047739:CDS | 35.0% |
AAACAGGACATTCTTGGGAA+TGG | + | chr5.1:11214674-11214693 | None:intergenic | 40.0% | |
AAACTCCCATTGTTATGAGG+TGG | + | chr5.1:11214840-11214859 | None:intergenic | 40.0% | |
AACAGGACATTCTTGGGAAT+GGG | + | chr5.1:11214673-11214692 | None:intergenic | 40.0% | |
AACAGTTCCAACAATGATCC+TGG | - | chr5.1:11214531-11214550 | MS.gene047739:CDS | 40.0% | |
AACTAAATCATATCCGGGGA+TGG | - | chr5.1:11214764-11214783 | MS.gene047739:CDS | 40.0% | |
AATCCACCACCTCATAACAA+TGG | - | chr5.1:11214831-11214850 | MS.gene047739:CDS | 40.0% | |
ACTGTTTATGGGACAACTTC+TGG | - | chr5.1:11214996-11215015 | MS.gene047739:CDS | 40.0% | |
ATCCACCACCTCATAACAAT+GGG | - | chr5.1:11214832-11214851 | MS.gene047739:CDS | 40.0% | |
CAAACCCATCATGTTCATCA+GGG | - | chr5.1:11214508-11214527 | MS.gene047739:CDS | 40.0% | |
CCGAGAACTAAATCATATCC+GGG | - | chr5.1:11214759-11214778 | MS.gene047739:CDS | 40.0% | |
CGAGAACTAAATCATATCCG+GGG | - | chr5.1:11214760-11214779 | MS.gene047739:CDS | 40.0% | |
TGTTCCCTGATGAACATGAT+GGG | + | chr5.1:11214515-11214534 | None:intergenic | 40.0% | |
! | AACAATGGGAGTTTTACTGC+TGG | - | chr5.1:11214846-11214865 | MS.gene047739:CDS | 40.0% |
! | ACAATGGGAGTTTTACTGCT+GGG | - | chr5.1:11214847-11214866 | MS.gene047739:CDS | 40.0% |
! | GAGAAATTGGTGCCTCTTTA+TGG | - | chr5.1:11214714-11214733 | MS.gene047739:CDS | 40.0% |
! | GGAAACTTTTCGTTTTCGAC+GGG | - | chr5.1:11214915-11214934 | MS.gene047739:CDS | 40.0% |
! | GGTTATCCATTTGGGTTCAA+CGG | - | chr5.1:11215017-11215036 | MS.gene047739:CDS | 40.0% |
! | GTTATCCATTTGGGTTCAAC+GGG | - | chr5.1:11215018-11215037 | MS.gene047739:CDS | 40.0% |
!! | CCCGGATATGATTTAGTTCT+CGG | + | chr5.1:11214762-11214781 | None:intergenic | 40.0% |
!! | TTGTTATGAGGTGGTGGATT+CGG | + | chr5.1:11214831-11214850 | None:intergenic | 40.0% |
!! | TTTTCGTTTTCGACGGGTTT+TGG | - | chr5.1:11214921-11214940 | MS.gene047739:CDS | 40.0% |
AACAATGATCCTGGCGATGT+CGG | - | chr5.1:11214540-11214559 | MS.gene047739:CDS | 45.0% | |
AAGCAACAGGACAAGTGCAA+CGG | - | chr5.1:11215075-11215094 | MS.gene047739:CDS | 45.0% | |
ACTGCTGGGATTGGATTGAT+GGG | - | chr5.1:11214861-11214880 | MS.gene047739:CDS | 45.0% | |
CCAAACCCATCATGTTCATC+AGG | - | chr5.1:11214507-11214526 | MS.gene047739:CDS | 45.0% | |
CCAAATCTAGCAGTAGCCAT+CGG | + | chr5.1:11214897-11214916 | None:intergenic | 45.0% | |
CTGTTCCCTGATGAACATGA+TGG | + | chr5.1:11214516-11214535 | None:intergenic | 45.0% | |
GATCCAGTGATCACACTTTG+TGG | - | chr5.1:11214600-11214619 | MS.gene047739:CDS | 45.0% | |
GGTTTCAATTCGCAAGCAAC+AGG | - | chr5.1:11215062-11215081 | MS.gene047739:CDS | 45.0% | |
GTTGGCCATGTCTTTATAGG+TGG | - | chr5.1:11214634-11214653 | MS.gene047739:CDS | 45.0% | |
TACTGCTGGGATTGGATTGA+TGG | - | chr5.1:11214860-11214879 | MS.gene047739:CDS | 45.0% | |
TGAAACCCGTTGAACCCAAA+TGG | + | chr5.1:11215026-11215045 | None:intergenic | 45.0% | |
TGACCACAAAGTGTGATCAC+TGG | + | chr5.1:11214606-11214625 | None:intergenic | 45.0% | |
TGGTAGAGGTAAAACGCAGA+CGG | - | chr5.1:11214734-11214753 | MS.gene047739:CDS | 45.0% | |
! | ATTTGGGTTCAACGGGTTTC+AGG | - | chr5.1:11215025-11215044 | MS.gene047739:CDS | 45.0% |
! | TTGGTGCCTCTTTATGGTAG+AGG | - | chr5.1:11214720-11214739 | MS.gene047739:CDS | 45.0% |
! | TTTGGGTTCAACGGGTTTCA+GGG | - | chr5.1:11215026-11215045 | MS.gene047739:CDS | 45.0% |
!! | CCTGATGAACATGATGGGTT+TGG | + | chr5.1:11214510-11214529 | None:intergenic | 45.0% |
!! | GATGAACATGATGGGTTTGG+TGG | + | chr5.1:11214507-11214526 | None:intergenic | 45.0% |
!!! | TCTCGACGTTTTGGAGAATC+AGG | - | chr5.1:11214456-11214475 | MS.gene047739:CDS | 45.0% |
CCGATGGCTACTGCTAGATT+TGG | - | chr5.1:11214894-11214913 | MS.gene047739:CDS | 50.0% | |
CTCCCATTGTTATGAGGTGG+TGG | + | chr5.1:11214837-11214856 | None:intergenic | 50.0% | |
GACATCGCCAGGATCATTGT+TGG | + | chr5.1:11214541-11214560 | None:intergenic | 50.0% | |
! | GATGGGTGGATTTCTTCCGA+TGG | - | chr5.1:11214878-11214897 | MS.gene047739:CDS | 50.0% |
! | GGGAGTTTTACTGCTGGGAT+TGG | - | chr5.1:11214852-11214871 | MS.gene047739:CDS | 50.0% |
!! | CGTTTTCGACGGGTTTTGGT+GGG | - | chr5.1:11214925-11214944 | MS.gene047739:CDS | 50.0% |
!! | TCGTTTTCGACGGGTTTTGG+TGG | - | chr5.1:11214924-11214943 | MS.gene047739:CDS | 50.0% |
AACAGGACAAGTGCAACGGC+AGG | - | chr5.1:11215079-11215098 | MS.gene047739:CDS | 55.0% | |
GCTGGGATTGGATTGATGGG+TGG | - | chr5.1:11214864-11214883 | MS.gene047739:CDS | 55.0% | |
TCAAAATCGCCGACATCGCC+AGG | + | chr5.1:11214552-11214571 | None:intergenic | 55.0% | |
TTTCAGGGTGGGAATGCGAG+AGG | - | chr5.1:11215041-11215060 | MS.gene047739:CDS | 55.0% | |
! | GGTTCAACGGGTTTCAGGGT+GGG | - | chr5.1:11215030-11215049 | MS.gene047739:CDS | 55.0% |
!! | ATGAGGTGGTGGATTCGGCA+CGG | + | chr5.1:11214826-11214845 | None:intergenic | 55.0% |
AGGACAAGTGCAACGGCAGG+AGG | - | chr5.1:11215082-11215101 | MS.gene047739:CDS | 60.0% | |
GAGATTCCTCGCCGTCCTTC+CGG | - | chr5.1:11214786-11214805 | MS.gene047739:CDS | 60.0% | |
! | GGGTTCAACGGGTTTCAGGG+TGG | - | chr5.1:11215029-11215048 | MS.gene047739:CDS | 60.0% |
! | GGTGGATTCGGCACGGTTTG+CGG | + | chr5.1:11214819-11214838 | None:intergenic | 60.0% |
CACGGTTTGCGGCCTCTGTC+CGG | + | chr5.1:11214808-11214827 | None:intergenic | 65.0% | |
CGGCGAGGAATCTCCATCCC+CGG | + | chr5.1:11214780-11214799 | None:intergenic | 65.0% | |
GTTTGCGGCCTCTGTCCGGA+AGG | + | chr5.1:11214804-11214823 | None:intergenic | 65.0% | |
CTCGCCGTCCTTCCGGACAG+AGG | - | chr5.1:11214793-11214812 | MS.gene047739:CDS | 70.0% | |
CTCTGTCCGGAAGGACGGCG+AGG | + | chr5.1:11214795-11214814 | None:intergenic | 70.0% | |
GCGGCCTCTGTCCGGAAGGA+CGG | + | chr5.1:11214800-11214819 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 11214453 | 11215175 | 11214453 | ID=MS.gene047739 |
chr5.1 | mRNA | 11214453 | 11215175 | 11214453 | ID=MS.gene047739.t1;Parent=MS.gene047739 |
chr5.1 | exon | 11214453 | 11215175 | 11214453 | ID=MS.gene047739.t1.exon1;Parent=MS.gene047739.t1 |
chr5.1 | CDS | 11214453 | 11215175 | 11214453 | ID=cds.MS.gene047739.t1;Parent=MS.gene047739.t1 |
Gene Sequence |
Protein sequence |