AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048632

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048632.t1 MTR_7g095220 99.710 345 1 0 1 345 1 345 0.0 707
MS.gene048632.t1 MTR_3g085570 30.620 258 157 7 2 250 33 277 2.04e-25 105
MS.gene048632.t1 MTR_8g080370 30.415 217 136 5 2 214 49 254 2.97e-22 97.1
MS.gene048632.t1 MTR_8g085600 30.769 195 121 5 4 194 77 261 2.89e-21 94.4
MS.gene048632.t1 MTR_4g114110 30.986 213 132 6 2 210 79 280 2.96e-20 91.7
MS.gene048632.t1 MTR_2g008440 31.004 229 122 6 2 194 41 269 4.89e-19 88.2
MS.gene048632.t1 MTR_2g102370 28.111 217 129 6 3 200 2 210 2.42e-18 85.5
MS.gene048632.t1 MTR_2g094093 27.554 323 187 15 4 300 20 321 3.72e-18 84.7
MS.gene048632.t1 MTR_8g030940 25.723 311 197 10 4 294 25 321 1.68e-17 82.8
MS.gene048632.t1 MTR_4g011900 26.522 230 142 6 3 214 4 224 3.54e-17 82.0
MS.gene048632.t1 MTR_0105s0130 23.148 324 201 10 4 297 89 394 4.22e-17 82.4
MS.gene048632.t1 MTR_0345s0010 23.148 324 201 10 4 297 89 394 5.28e-17 82.0
MS.gene048632.t1 MTR_0105s0170 23.148 324 201 10 4 297 102 407 7.06e-17 81.6
MS.gene048632.t1 MTR_1330s0010 23.148 324 201 10 4 297 102 407 7.58e-17 81.6
MS.gene048632.t1 MTR_0105s0040 22.162 370 233 12 4 343 187 531 1.35e-16 81.3
MS.gene048632.t1 MTR_0105s0020 22.840 324 202 10 4 297 89 394 1.91e-16 80.5
MS.gene048632.t1 MTR_2g019230 29.493 217 136 7 4 213 52 258 9.38e-16 78.2
MS.gene048632.t1 MTR_7g096420 28.899 218 140 7 4 210 34 247 1.69e-15 77.4
MS.gene048632.t1 MTR_3g108860 28.767 219 119 6 3 213 16 205 7.43e-15 75.1
MS.gene048632.t1 MTR_7g029290 25.079 315 191 13 8 295 59 355 7.63e-15 75.5
MS.gene048632.t1 MTR_6g023805 24.380 242 148 7 8 231 60 284 4.97e-14 72.8
MS.gene048632.t1 MTR_0496s0010 21.184 321 207 9 4 295 71 374 6.11e-14 72.8
MS.gene048632.t1 MTR_8g085650 24.830 294 160 9 3 259 6 275 1.66e-13 70.9
MS.gene048632.t1 MTR_4g022400 22.523 333 196 10 2 297 66 373 2.56e-13 70.9
MS.gene048632.t1 MTR_7g070320 30.049 203 111 10 65 253 489 674 2.69e-13 71.2
MS.gene048632.t1 MTR_8g468030 23.645 203 137 4 13 214 159 344 1.41e-12 68.9
MS.gene048632.t1 MTR_4g108280 24.186 215 143 5 2 214 29 225 2.16e-12 67.8
MS.gene048632.t1 MTR_3g094850 27.136 199 118 4 2 192 7 186 4.16e-12 67.0
MS.gene048632.t1 MTR_4g022260 21.605 324 206 9 4 297 71 376 6.29e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048632.t1 AT3G63220 67.536 345 112 0 1 345 1 345 1.82e-180 503
MS.gene048632.t1 AT3G63220 67.536 345 112 0 1 345 8 352 3.07e-180 503
MS.gene048632.t1 AT3G63220 67.536 345 112 0 1 345 8 352 3.07e-180 503
MS.gene048632.t1 AT1G16250 29.659 381 216 12 4 343 8 377 1.73e-34 130
MS.gene048632.t1 AT1G16250 29.659 381 216 12 4 343 8 377 1.73e-34 130
MS.gene048632.t1 AT1G67480 31.776 214 133 4 4 214 39 242 6.27e-24 101
MS.gene048632.t1 AT1G67480 31.776 214 133 4 4 214 39 242 6.27e-24 101
MS.gene048632.t1 AT1G67480 31.776 214 133 4 4 214 39 242 6.27e-24 101
MS.gene048632.t1 AT1G55270 32.308 195 118 5 4 194 78 262 2.83e-22 97.4
MS.gene048632.t1 AT2G24540 30.500 200 116 4 4 194 28 213 2.28e-21 94.4
MS.gene048632.t1 AT1G27420 27.692 195 132 3 2 191 8 198 1.04e-18 86.3
MS.gene048632.t1 AT4G03030 30.769 221 133 7 4 207 38 255 1.39e-18 86.7
MS.gene048632.t1 AT1G80440 27.876 226 140 6 3 214 2 218 2.92e-18 85.1
MS.gene048632.t1 AT1G14330 22.327 318 206 6 4 295 94 396 2.98e-17 82.8
MS.gene048632.t1 AT5G03000 28.814 236 141 8 4 229 39 257 2.94e-16 79.3
MS.gene048632.t1 AT5G03020 28.571 189 116 5 10 191 22 198 4.18e-16 78.6
MS.gene048632.t1 AT2G02870 23.013 239 169 3 4 242 117 340 1.84e-15 77.4
MS.gene048632.t1 AT2G02870 23.013 239 169 3 4 242 117 340 1.84e-15 77.4
MS.gene048632.t1 AT2G02870 23.013 239 169 3 4 242 117 340 1.84e-15 77.4
MS.gene048632.t1 AT5G02980 27.083 240 128 6 2 215 11 229 6.05e-15 75.1
MS.gene048632.t1 AT1G30090 30.594 219 131 9 4 213 53 259 8.36e-15 75.5
MS.gene048632.t1 AT3G27150 23.988 321 193 11 12 301 78 378 1.03e-14 75.1
MS.gene048632.t1 AT3G27150 23.988 321 193 11 12 301 78 378 1.03e-14 75.1
MS.gene048632.t1 AT1G26930 23.944 213 142 5 4 214 71 265 1.07e-13 72.0
MS.gene048632.t1 AT1G55270 32.812 128 74 4 69 194 19 136 1.72e-13 70.5
MS.gene048632.t1 AT2G22030 27.411 197 122 4 2 192 23 204 2.34e-13 70.9
MS.gene048632.t1 AT3G61350 29.255 188 111 6 4 183 21 194 5.48e-13 69.7
MS.gene048632.t1 AT3G61350 29.255 188 111 6 4 183 21 194 5.48e-13 69.7
MS.gene048632.t1 AT2G21950 28.634 227 135 8 2 214 18 231 6.74e-13 69.3
MS.gene048632.t1 AT3G43710 27.426 237 147 7 5 231 26 247 6.85e-13 69.3
MS.gene048632.t1 AT3G46050 26.364 220 139 6 5 215 18 223 3.36e-12 67.4
MS.gene048632.t1 AT4G19330 24.797 246 153 7 8 238 34 262 8.07e-12 66.2
MS.gene048632.t1 AT4G29370 26.577 222 136 9 2 213 23 227 1.18e-11 65.9
MS.gene048632.t1 AT4G33900 27.895 190 126 4 8 188 15 202 2.58e-11 64.7

Find 97 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGGCCCACTGTTGGATTA+TGG 0.219380 7.4:-14050398 None:intergenic
TAGCTTTGGATGGAGGTAAA+AGG 0.268586 7.4:-14050056 None:intergenic
CACCTTATTGCAACAGCATC+AGG 0.322901 7.4:-14050019 None:intergenic
GGGGCCCACTGTTGGATTAT+GGG 0.332679 7.4:-14050397 None:intergenic
AGAATTGGGTTTGCAATGAT+TGG 0.333271 7.4:+14050826 MS.gene048632:CDS
AGGTCCAATGGCAGTAGTTC+AGG 0.344387 7.4:+14050714 MS.gene048632:CDS
TAGAGGTTGTCTCTCGTTCT+TGG 0.348117 7.4:+14050077 MS.gene048632:CDS
TTATCAGATGTTGATGTTCT+CGG 0.371892 7.4:+14050919 MS.gene048632:CDS
TACAGTTGCCATACGTTCTC+TGG 0.374253 7.4:-14050187 None:intergenic
ACCGTGTCATTGGAGCTATT+TGG 0.377305 7.4:-14050969 None:intergenic
TACATGATTGGAGGCGTCAT+TGG 0.386097 7.4:+14050865 MS.gene048632:CDS
GCTGGAAAGTTGTTTGTCAT+TGG 0.404038 7.4:+14050295 MS.gene048632:CDS
GGTGATGATTTATACATGAT+TGG 0.404282 7.4:+14050853 MS.gene048632:CDS
AGAACATCAACATCTGATAA+TGG 0.409101 7.4:-14050916 None:intergenic
TCCCTGATGCTGTTGCAATA+AGG 0.411155 7.4:+14050017 MS.gene048632:CDS
GATGTTGATGTTCTCGGACT+TGG 0.411384 7.4:+14050925 MS.gene048632:CDS
TAGACAATGCAGGGGCTAGA+TGG 0.415228 7.4:+14050665 MS.gene048632:CDS
ATAATGTCTGAACTGATTGA+AGG 0.416927 7.4:+14049992 None:intergenic
ACCAATCACTATTCCTGAAC+AGG 0.430627 7.4:-14050596 None:intergenic
CAACTTTCCAGCTGCGGATA+CGG 0.435951 7.4:-14050284 None:intergenic
TTGGACCTGACAGATGGAAC+TGG 0.437231 7.4:+14050884 MS.gene048632:CDS
ACAGCATGCAAACATAGAAC+GGG 0.441369 7.4:-14050440 None:intergenic
AATGGGAAAATTGTTGTCGC+TGG 0.444336 7.4:+14050469 MS.gene048632:CDS
ATGACCCTCTTAGAGATCTC+TGG 0.444585 7.4:+14050209 MS.gene048632:CDS
CGAGAGACAACCTCTAGCTT+TGG 0.447447 7.4:-14050070 None:intergenic
GTACCACGACACCGTGTCAT+TGG 0.449231 7.4:-14050979 None:intergenic
GCCTGTTCAGGAATAGTGAT+TGG 0.449318 7.4:+14050595 MS.gene048632:CDS
TGATAGTTCTGGGCTATGAA+TGG 0.452045 7.4:-14050107 None:intergenic
ACTCAAAATTCAGCCTGTTC+AGG 0.453864 7.4:+14050583 MS.gene048632:CDS
AATCCAACAGTGGGCCCCTC+GGG 0.459039 7.4:+14050402 MS.gene048632:CDS
AGCAAGGTGCCTGGTCTTTG+AGG 0.462553 7.4:-14050251 None:intergenic
ATGTCCCAGTTCCATCTGTC+AGG 0.465004 7.4:-14050889 None:intergenic
GAGGAGTGCGAGTGGCTTCA+AGG 0.467583 7.4:+14050694 MS.gene048632:CDS
ACCAGGCACCTTGCTCACTT+TGG 0.468091 7.4:+14050259 MS.gene048632:CDS
CGGTGTCGTGGTACCATTGT+TGG 0.476922 7.4:+14050988 MS.gene048632:CDS
CTGGTCTTTGAGGGAAGAAC+GGG 0.478632 7.4:-14050241 None:intergenic
TAATCCAACAGTGGGCCCCT+CGG 0.485586 7.4:+14050401 MS.gene048632:CDS
ATCATAAAGCAAGACAAAGA+AGG 0.487099 7.4:+14050766 MS.gene048632:CDS
AGCTTTGGATGGAGGTAAAA+GGG 0.491803 7.4:-14050055 None:intergenic
AAGCCCGAGGGGCCCACTGT+TGG 0.494183 7.4:-14050405 None:intergenic
ACCAAAGTGAGCAAGGTGCC+TGG 0.495529 7.4:-14050260 None:intergenic
TTTGGTGCCGTATCCGCAGC+TGG 0.498780 7.4:+14050277 MS.gene048632:CDS
GGAGTCCATACATCCTTCTC+AGG 0.502640 7.4:-14050541 None:intergenic
ATGGGAAAATTGTTGTCGCT+GGG 0.504570 7.4:+14050470 MS.gene048632:CDS
GCAAGGTGCCTGGTCTTTGA+GGG 0.508996 7.4:-14050250 None:intergenic
GCATCCTGAACTACTGCCAT+TGG 0.513611 7.4:-14050718 None:intergenic
CCGTTCTTCCCTCAAAGACC+AGG 0.521677 7.4:+14050242 MS.gene048632:CDS
GGAAAGTTGTTTGTCATTGG+CGG 0.525545 7.4:+14050298 MS.gene048632:CDS
CACAGCATGCAAACATAGAA+CGG 0.534363 7.4:-14050441 None:intergenic
ACGATCCTGAGAAGGATGTA+TGG 0.540634 7.4:+14050536 MS.gene048632:CDS
GCACTTTGTGTTATGAGCAA+TGG 0.543239 7.4:+14050739 MS.gene048632:CDS
GGAGCTATTTGGCGCCAAGT+TGG 0.544319 7.4:-14050958 None:intergenic
GGGAAAATTGTTGTCGCTGG+GGG 0.548900 7.4:+14050472 MS.gene048632:CDS
GATGATTTATACATGATTGG+AGG 0.550401 7.4:+14050856 MS.gene048632:CDS
AAAACATCCATCGTGATCAC+CGG 0.551179 7.4:-14050347 None:intergenic
GGGCCCACTGTTGGATTATG+GGG 0.555055 7.4:-14050396 None:intergenic
TCATAAAGCAAGACAAAGAA+GGG 0.555728 7.4:+14050767 MS.gene048632:CDS
GGGTTTGCAATGATTGGACT+AGG 0.558189 7.4:+14050832 MS.gene048632:CDS
CTTTGAGGGAAGAACGGGAA+GGG 0.565020 7.4:-14050236 None:intergenic
CCTGGTCTTTGAGGGAAGAA+CGG 0.568560 7.4:-14050242 None:intergenic
GTGCGATGAAGATCAGGCAT+TGG 0.570847 7.4:-14050562 None:intergenic
CCATCGTGATCACCGGTCGA+AGG 0.573037 7.4:-14050340 None:intergenic
AGACAACCTCTAGCTTTGGA+TGG 0.574344 7.4:-14050066 None:intergenic
GTAATCCAGAGATCTCTAAG+AGG 0.575936 7.4:-14050214 None:intergenic
GCCAAATAGCTCCAATGACA+CGG 0.582259 7.4:+14050968 MS.gene048632:CDS
TTACCTCCATCCAAAGCTAG+AGG 0.588537 7.4:+14050060 MS.gene048632:CDS
GCGTCATTGGACCTGACAGA+TGG 0.590626 7.4:+14050878 MS.gene048632:CDS
GGAACAAGCATTGAAGCCCG+AGG 0.593474 7.4:-14050418 None:intergenic
GAACAAGCATTGAAGCCCGA+GGG 0.596251 7.4:-14050417 None:intergenic
TGTTCAGGAATAGTGATTGG+TGG 0.597908 7.4:+14050598 MS.gene048632:CDS
CGAGTGGCTTCAAGGTCCAA+TGG 0.598467 7.4:+14050702 MS.gene048632:CDS
CAACCTCTAGCTTTGGATGG+AGG 0.602511 7.4:-14050063 None:intergenic
AAGTTGTTTGTCATTGGCGG+TGG 0.603362 7.4:+14050301 MS.gene048632:CDS
CCTTCGACCGGTGATCACGA+TGG 0.605134 7.4:+14050340 MS.gene048632:CDS
TGGACCTGACAGATGGAACT+GGG 0.607636 7.4:+14050885 MS.gene048632:CDS
ACAGGAGGTTGCTTCATCTG+AGG 0.609268 7.4:+14050138 MS.gene048632:CDS
GGTAAAAGGGAACGCGTGCA+AGG 0.612187 7.4:-14050042 None:intergenic
GTCATATGACCAGACTTCGT+CGG 0.615421 7.4:-14050374 None:intergenic
AGAAATGTACGATCCTGAGA+AGG 0.617500 7.4:+14050528 MS.gene048632:CDS
ACCTTATTGCAACAGCATCA+GGG 0.622347 7.4:-14050018 None:intergenic
ATACGGCACCAAAGTGAGCA+AGG 0.624375 7.4:-14050267 None:intergenic
TGGGAAAATTGTTGTCGCTG+GGG 0.627830 7.4:+14050471 MS.gene048632:CDS
TGACCCCATAATCCAACAGT+GGG 0.628215 7.4:+14050393 MS.gene048632:CDS
GATCAAAAGCACAGACACAC+AGG 0.628483 7.4:-14050165 None:intergenic
GATGCTGTTGATCCTTCGAC+CGG 0.628985 7.4:+14050328 MS.gene048632:CDS
TAATCCAGAGATCTCTAAGA+GGG 0.633713 7.4:-14050213 None:intergenic
CATCAGTGTACAACCAACAA+TGG 0.634433 7.4:-14051001 None:intergenic
GCTCCAATGACACGGTGTCG+TGG 0.641084 7.4:+14050976 MS.gene048632:CDS
TTGGTAGTGAGAGACCAACT+TGG 0.641441 7.4:+14050944 MS.gene048632:CDS
AACAAGCATTGAAGCCCGAG+GGG 0.644286 7.4:-14050416 None:intergenic
GGATCGTCGAGGAGTGCGAG+TGG 0.648916 7.4:+14050686 MS.gene048632:CDS
GACAAACAACTTTCCAGCTG+CGG 0.655991 7.4:-14050290 None:intergenic
AAAGATGCATGTACTGCACA+AGG 0.662171 7.4:+14050621 MS.gene048632:CDS
ATGACCCCATAATCCAACAG+TGG 0.692852 7.4:+14050392 MS.gene048632:CDS
CAGCATGCAAACATAGAACG+GGG 0.697725 7.4:-14050439 None:intergenic
TCTTTGAGGGAAGAACGGGA+AGG 0.697994 7.4:-14050237 None:intergenic
AGGGGCTAGATGGATCGTCG+AGG 0.760201 7.4:+14050675 MS.gene048632:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAGATTTTAAAAAGAGAAT+TGG + chr7.4:14050811-14050830 MS.gene048632:CDS 20.0%
!!! CAGATTTTAAAAAGAGAATT+GGG + chr7.4:14050812-14050831 MS.gene048632:CDS 20.0%
AGAACATCAACATCTGATAA+TGG - chr7.4:14050919-14050938 None:intergenic 30.0%
AGAACTATCAAAAATTCGAC+AGG + chr7.4:14050120-14050139 MS.gene048632:CDS 30.0%
ATCATAAAGCAAGACAAAGA+AGG + chr7.4:14050766-14050785 MS.gene048632:CDS 30.0%
GATGATTTATACATGATTGG+AGG + chr7.4:14050856-14050875 MS.gene048632:CDS 30.0%
GGTGATGATTTATACATGAT+TGG + chr7.4:14050853-14050872 MS.gene048632:CDS 30.0%
TCATAAAGCAAGACAAAGAA+GGG + chr7.4:14050767-14050786 MS.gene048632:CDS 30.0%
TTATCAGATGTTGATGTTCT+CGG + chr7.4:14050919-14050938 MS.gene048632:CDS 30.0%
!! GTCGAATTTTTGATAGTTCT+GGG - chr7.4:14050120-14050139 None:intergenic 30.0%
!! TGTCGAATTTTTGATAGTTC+TGG - chr7.4:14050121-14050140 None:intergenic 30.0%
ACTATCAAAAATTCGACAGG+AGG + chr7.4:14050123-14050142 MS.gene048632:CDS 35.0%
AGAATTGGGTTTGCAATGAT+TGG + chr7.4:14050826-14050845 MS.gene048632:CDS 35.0%
! TAATCCAGAGATCTCTAAGA+GGG - chr7.4:14050216-14050235 None:intergenic 35.0%
!! TTGCATGCTGTGTTTTGAAT+GGG + chr7.4:14050452-14050471 MS.gene048632:CDS 35.0%
!! TTTGCATGCTGTGTTTTGAA+TGG + chr7.4:14050451-14050470 MS.gene048632:CDS 35.0%
!!! TGCAAGTTTTAGACAATGCA+GGG + chr7.4:14050656-14050675 MS.gene048632:CDS 35.0%
AAAACATCCATCGTGATCAC+CGG - chr7.4:14050350-14050369 None:intergenic 40.0%
AAAGATGCATGTACTGCACA+AGG + chr7.4:14050621-14050640 MS.gene048632:CDS 40.0%
AATGGGAAAATTGTTGTCGC+TGG + chr7.4:14050469-14050488 MS.gene048632:CDS 40.0%
ACAGCATGCAAACATAGAAC+GGG - chr7.4:14050443-14050462 None:intergenic 40.0%
ACCAATCACTATTCCTGAAC+AGG - chr7.4:14050599-14050618 None:intergenic 40.0%
ACCTTATTGCAACAGCATCA+GGG - chr7.4:14050021-14050040 None:intergenic 40.0%
ACTCAAAATTCAGCCTGTTC+AGG + chr7.4:14050583-14050602 MS.gene048632:CDS 40.0%
AGAAATGTACGATCCTGAGA+AGG + chr7.4:14050528-14050547 MS.gene048632:CDS 40.0%
ATGGGAAAATTGTTGTCGCT+GGG + chr7.4:14050470-14050489 MS.gene048632:CDS 40.0%
CACAGCATGCAAACATAGAA+CGG - chr7.4:14050444-14050463 None:intergenic 40.0%
CATCAGTGTACAACCAACAA+TGG - chr7.4:14051004-14051023 None:intergenic 40.0%
GCACTTTGTGTTATGAGCAA+TGG + chr7.4:14050739-14050758 MS.gene048632:CDS 40.0%
GCTGGAAAGTTGTTTGTCAT+TGG + chr7.4:14050295-14050314 MS.gene048632:CDS 40.0%
GGAAAGTTGTTTGTCATTGG+CGG + chr7.4:14050298-14050317 MS.gene048632:CDS 40.0%
GTAATCCAGAGATCTCTAAG+AGG - chr7.4:14050217-14050236 None:intergenic 40.0%
TGTTCAGGAATAGTGATTGG+TGG + chr7.4:14050598-14050617 MS.gene048632:CDS 40.0%
! CTTTTGATCCAGAGAACGTA+TGG + chr7.4:14050179-14050198 MS.gene048632:CDS 40.0%
!! AGCTTTGGATGGAGGTAAAA+GGG - chr7.4:14050058-14050077 None:intergenic 40.0%
!! TAGCTTTGGATGGAGGTAAA+AGG - chr7.4:14050059-14050078 None:intergenic 40.0%
!! TGATAGTTCTGGGCTATGAA+TGG - chr7.4:14050110-14050129 None:intergenic 40.0%
!! TTTTGAGTGCGATGAAGATC+AGG - chr7.4:14050571-14050590 None:intergenic 40.0%
!!! GCAAGTTTTAGACAATGCAG+GGG + chr7.4:14050657-14050676 MS.gene048632:CDS 40.0%
!!! GTGCAAGTTTTAGACAATGC+AGG + chr7.4:14050655-14050674 MS.gene048632:CDS 40.0%
AAGTTGTTTGTCATTGGCGG+TGG + chr7.4:14050301-14050320 MS.gene048632:CDS 45.0%
ACGATCCTGAGAAGGATGTA+TGG + chr7.4:14050536-14050555 MS.gene048632:CDS 45.0%
ATGACCCCATAATCCAACAG+TGG + chr7.4:14050392-14050411 MS.gene048632:CDS 45.0%
ATGACCCTCTTAGAGATCTC+TGG + chr7.4:14050209-14050228 MS.gene048632:CDS 45.0%
CACCTTATTGCAACAGCATC+AGG - chr7.4:14050022-14050041 None:intergenic 45.0%
CAGCATGCAAACATAGAACG+GGG - chr7.4:14050442-14050461 None:intergenic 45.0%
GACAAACAACTTTCCAGCTG+CGG - chr7.4:14050293-14050312 None:intergenic 45.0%
GATGTTGATGTTCTCGGACT+TGG + chr7.4:14050925-14050944 MS.gene048632:CDS 45.0%
GCCAAATAGCTCCAATGACA+CGG + chr7.4:14050968-14050987 MS.gene048632:CDS 45.0%
GCCTGTTCAGGAATAGTGAT+TGG + chr7.4:14050595-14050614 MS.gene048632:CDS 45.0%
GGGTTTGCAATGATTGGACT+AGG + chr7.4:14050832-14050851 MS.gene048632:CDS 45.0%
GTCATATGACCAGACTTCGT+CGG - chr7.4:14050377-14050396 None:intergenic 45.0%
TACAGTTGCCATACGTTCTC+TGG - chr7.4:14050190-14050209 None:intergenic 45.0%
TAGAGGTTGTCTCTCGTTCT+TGG + chr7.4:14050077-14050096 MS.gene048632:CDS 45.0%
TCCCTGATGCTGTTGCAATA+AGG + chr7.4:14050017-14050036 MS.gene048632:CDS 45.0%
TGACCCCATAATCCAACAGT+GGG + chr7.4:14050393-14050412 MS.gene048632:CDS 45.0%
TGGGAAAATTGTTGTCGCTG+GGG + chr7.4:14050471-14050490 MS.gene048632:CDS 45.0%
TTACCTCCATCCAAAGCTAG+AGG + chr7.4:14050060-14050079 MS.gene048632:CDS 45.0%
! ACCGTGTCATTGGAGCTATT+TGG - chr7.4:14050972-14050991 None:intergenic 45.0%
! GATCAAAAGCACAGACACAC+AGG - chr7.4:14050168-14050187 None:intergenic 45.0%
!! AGACAACCTCTAGCTTTGGA+TGG - chr7.4:14050069-14050088 None:intergenic 45.0%
!! TACATGATTGGAGGCGTCAT+TGG + chr7.4:14050865-14050884 MS.gene048632:CDS 45.0%
!! TTGGTAGTGAGAGACCAACT+TGG + chr7.4:14050944-14050963 MS.gene048632:CDS 45.0%
ACAGGAGGTTGCTTCATCTG+AGG + chr7.4:14050138-14050157 MS.gene048632:CDS 50.0%
AGGTCCAATGGCAGTAGTTC+AGG + chr7.4:14050714-14050733 MS.gene048632:CDS 50.0%
ATACGGCACCAAAGTGAGCA+AGG - chr7.4:14050270-14050289 None:intergenic 50.0%
ATGTCCCAGTTCCATCTGTC+AGG - chr7.4:14050892-14050911 None:intergenic 50.0%
CAACTTTCCAGCTGCGGATA+CGG - chr7.4:14050287-14050306 None:intergenic 50.0%
GATGCTGTTGATCCTTCGAC+CGG + chr7.4:14050328-14050347 MS.gene048632:CDS 50.0%
GCATCCTGAACTACTGCCAT+TGG - chr7.4:14050721-14050740 None:intergenic 50.0%
GGAGTCCATACATCCTTCTC+AGG - chr7.4:14050544-14050563 None:intergenic 50.0%
GGGAAAATTGTTGTCGCTGG+GGG + chr7.4:14050472-14050491 MS.gene048632:CDS 50.0%
GTGCGATGAAGATCAGGCAT+TGG - chr7.4:14050565-14050584 None:intergenic 50.0%
TAGACAATGCAGGGGCTAGA+TGG + chr7.4:14050665-14050684 MS.gene048632:CDS 50.0%
TGGACCTGACAGATGGAACT+GGG + chr7.4:14050885-14050904 MS.gene048632:CDS 50.0%
TTGGACCTGACAGATGGAAC+TGG + chr7.4:14050884-14050903 MS.gene048632:CDS 50.0%
! CCTGGTCTTTGAGGGAAGAA+CGG - chr7.4:14050245-14050264 None:intergenic 50.0%
! CGAGAGACAACCTCTAGCTT+TGG - chr7.4:14050073-14050092 None:intergenic 50.0%
! CTGGTCTTTGAGGGAAGAAC+GGG - chr7.4:14050244-14050263 None:intergenic 50.0%
! CTTTGAGGGAAGAACGGGAA+GGG - chr7.4:14050239-14050258 None:intergenic 50.0%
! GTTTTGCAACCGACGAAGTC+TGG + chr7.4:14050365-14050384 MS.gene048632:CDS 50.0%
! TCTTTGAGGGAAGAACGGGA+AGG - chr7.4:14050240-14050259 None:intergenic 50.0%
!! AACAAGCATTGAAGCCCGAG+GGG - chr7.4:14050419-14050438 None:intergenic 50.0%
!! CAACCTCTAGCTTTGGATGG+AGG - chr7.4:14050066-14050085 None:intergenic 50.0%
!! GAACAAGCATTGAAGCCCGA+GGG - chr7.4:14050420-14050439 None:intergenic 50.0%
ACCAGGCACCTTGCTCACTT+TGG + chr7.4:14050259-14050278 MS.gene048632:CDS 55.0%
AGGGGCCCACTGTTGGATTA+TGG - chr7.4:14050401-14050420 None:intergenic 55.0%
CCGTTCTTCCCTCAAAGACC+AGG + chr7.4:14050242-14050261 MS.gene048632:CDS 55.0%
CGAGTGGCTTCAAGGTCCAA+TGG + chr7.4:14050702-14050721 MS.gene048632:CDS 55.0%
GCGTCATTGGACCTGACAGA+TGG + chr7.4:14050878-14050897 MS.gene048632:CDS 55.0%
GGAGCTATTTGGCGCCAAGT+TGG - chr7.4:14050961-14050980 None:intergenic 55.0%
GGGCCCACTGTTGGATTATG+GGG - chr7.4:14050399-14050418 None:intergenic 55.0%
GGGGCCCACTGTTGGATTAT+GGG - chr7.4:14050400-14050419 None:intergenic 55.0%
GGTAAAAGGGAACGCGTGCA+AGG - chr7.4:14050045-14050064 None:intergenic 55.0%
GTACCACGACACCGTGTCAT+TGG - chr7.4:14050982-14051001 None:intergenic 55.0%
TAATCCAACAGTGGGCCCCT+CGG + chr7.4:14050401-14050420 MS.gene048632:CDS 55.0%
! ACCAAAGTGAGCAAGGTGCC+TGG - chr7.4:14050263-14050282 None:intergenic 55.0%
! AGCAAGGTGCCTGGTCTTTG+AGG - chr7.4:14050254-14050273 None:intergenic 55.0%
! GCAAGGTGCCTGGTCTTTGA+GGG - chr7.4:14050253-14050272 None:intergenic 55.0%
!! CGGTGTCGTGGTACCATTGT+TGG + chr7.4:14050988-14051007 MS.gene048632:CDS 55.0%
!! GGAACAAGCATTGAAGCCCG+AGG - chr7.4:14050421-14050440 None:intergenic 55.0%
AATCCAACAGTGGGCCCCTC+GGG + chr7.4:14050402-14050421 MS.gene048632:CDS 60.0%
AGGGGCTAGATGGATCGTCG+AGG + chr7.4:14050675-14050694 MS.gene048632:CDS 60.0%
CCATCGTGATCACCGGTCGA+AGG - chr7.4:14050343-14050362 None:intergenic 60.0%
CCTTCGACCGGTGATCACGA+TGG + chr7.4:14050340-14050359 MS.gene048632:CDS 60.0%
! GAGGAGTGCGAGTGGCTTCA+AGG + chr7.4:14050694-14050713 MS.gene048632:CDS 60.0%
! GCTCCAATGACACGGTGTCG+TGG + chr7.4:14050976-14050995 MS.gene048632:CDS 60.0%
!! TTTGGTGCCGTATCCGCAGC+TGG + chr7.4:14050277-14050296 MS.gene048632:CDS 60.0%
! GGATCGTCGAGGAGTGCGAG+TGG + chr7.4:14050686-14050705 MS.gene048632:CDS 65.0%
AAGCCCGAGGGGCCCACTGT+TGG - chr7.4:14050408-14050427 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 14049995 14051032 14049995 ID=MS.gene048632
chr7.4 mRNA 14049995 14051032 14049995 ID=MS.gene048632.t1;Parent=MS.gene048632
chr7.4 exon 14049995 14051032 14049995 ID=MS.gene048632.t1.exon1;Parent=MS.gene048632.t1
chr7.4 CDS 14049995 14051032 14049995 ID=cds.MS.gene048632.t1;Parent=MS.gene048632.t1
Gene Sequence

>MS.gene048632

ATGTCTGAACTGATTGAAGGACTCCCTGATGCTGTTGCAATAAGGTGCCTTGCACGCGTTCCCTTTTACCTCCATCCAAAGCTAGAGGTTGTCTCTCGTTCTTGGCAAGCAGCCATTCATAGCCCAGAACTATCAAAAATTCGACAGGAGGTTGCTTCATCTGAGGATCTCCTGTGTGTCTGTGCTTTTGATCCAGAGAACGTATGGCAACTGTATGACCCTCTTAGAGATCTCTGGATTACCCTTCCCGTTCTTCCCTCAAAGACCAGGCACCTTGCTCACTTTGGTGCCGTATCCGCAGCTGGAAAGTTGTTTGTCATTGGCGGTGGAAGTGATGCTGTTGATCCTTCGACCGGTGATCACGATGGATGTTTTGCAACCGACGAAGTCTGGTCATATGACCCCATAATCCAACAGTGGGCCCCTCGGGCTTCAATGCTTGTTCCCCGTTCTATGTTTGCATGCTGTGTTTTGAATGGGAAAATTGTTGTCGCTGGGGGCTTCACTAGCTGTAGAAAAACAATCTCTCAAGCAGAAATGTACGATCCTGAGAAGGATGTATGGACTCCAATGCCTGATCTTCATCGCACTCAAAATTCAGCCTGTTCAGGAATAGTGATTGGTGGAAAGATGCATGTACTGCACAAGGATATGTCAACAGTGCAAGTTTTAGACAATGCAGGGGCTAGATGGATCGTCGAGGAGTGCGAGTGGCTTCAAGGTCCAATGGCAGTAGTTCAGGATGCACTTTGTGTTATGAGCAATGGATCTATCATAAAGCAAGACAAAGAAGGGAGAAAGATTGTAAGTTCAGCAACAGATTTTAAAAAGAGAATTGGGTTTGCAATGATTGGACTAGGTGATGATTTATACATGATTGGAGGCGTCATTGGACCTGACAGATGGAACTGGGACATTAAGCCATTATCAGATGTTGATGTTCTCGGACTTGGTAGTGAGAGACCAACTTGGCGCCAAATAGCTCCAATGACACGGTGTCGTGGTACCATTGTTGGTTGTACACTGATGAGAATTTAA
Protein sequence

>MS.gene048632.t1

MSELIEGLPDAVAIRCLARVPFYLHPKLEVVSRSWQAAIHSPELSKIRQEVASSEDLLCVCAFDPENVWQLYDPLRDLWITLPVLPSKTRHLAHFGAVSAAGKLFVIGGGSDAVDPSTGDHDGCFATDEVWSYDPIIQQWAPRASMLVPRSMFACCVLNGKIVVAGGFTSCRKTISQAEMYDPEKDVWTPMPDLHRTQNSACSGIVIGGKMHVLHKDMSTVQVLDNAGARWIVEECEWLQGPMAVVQDALCVMSNGSIIKQDKEGRKIVSSATDFKKRIGFAMIGLGDDLYMIGGVIGPDRWNWDIKPLSDVDVLGLGSERPTWRQIAPMTRCRGTIVGCTLMRI