AlfalfaGEDB | MS.gene048887

M. sativa cultivar XinJiangDaYe / MS.gene048887

KEGG: K13412
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005509 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046872 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF13499.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048887.t1	XP_013447139.1	96.9	516	14	1	1	514	1	516	3.50E-247	864

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048887.t1	A2ZVI7	82.1	470	84	0	45	514	47	516	7.3e-193	674.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048887.t1	A0A072TVF6	96.9	516	14	1	1	514	1	516	2.5e-247	864.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene006046	MS.gene048887	PPI
MS.gene010622	MS.gene048887	PPI
MS.gene012634	MS.gene048887	PPI
MS.gene016961	MS.gene048887	PPI
MS.gene017187	MS.gene048887	PPI
MS.gene019069	MS.gene048887	PPI
MS.gene027068	MS.gene048887	PPI
MS.gene038179	MS.gene048887	PPI
MS.gene038421	MS.gene048887	PPI
MS.gene048887	MS.gene062288	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene048887.t1	MTR_8g099095	98.062	516	8	1	1	514	1	516	1051
MS.gene048887.t1	MTR_5g009830	83.784	518	79	5	1	514	1	517	863
MS.gene048887.t1	MTR_0028s0170	73.486	479	127	0	36	514	50	528	754
MS.gene048887.t1	MTR_5g089320	68.000	525	147	3	3	514	2	518	750
MS.gene048887.t1	MTR_5g092810	69.023	481	149	0	24	504	52	532	716
MS.gene048887.t1	MTR_3g051770	67.600	500	153	3	14	505	33	531	703
MS.gene048887.t1	MTR_4g132070	65.400	500	168	2	11	506	35	533	699
MS.gene048887.t1	MTR_5g009830	82.452	416	69	4	1	413	1	415	677
MS.gene048887.t1	MTR_1g026190	67.174	460	147	1	52	507	66	525	649
MS.gene048887.t1	MTR_1g041150	66.079	454	153	1	52	505	106	558	646

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene048887.t1	AT4G23650	79.140	465	97	0	50	514	64	528	796
MS.gene048887.t1	AT5G12180	68.511	524	154	4	1	514	1	523	752
MS.gene048887.t1	AT5G19360	67.241	522	159	2	1	514	1	518	740
MS.gene048887.t1	AT1G50700	67.959	490	152	1	17	506	31	515	704
MS.gene048887.t1	AT3G20410	63.842	531	162	3	3	512	18	539	699
MS.gene048887.t1	AT3G20410	63.842	531	162	3	3	512	18	539	699
MS.gene048887.t1	AT1G50700	64.535	516	152	2	17	506	31	541	688
MS.gene048887.t1	AT4G04720	65.000	500	167	2	13	505	22	520	682
MS.gene048887.t1	AT4G04720	65.000	500	167	2	13	505	22	520	682
MS.gene048887.t1	AT4G21940	67.238	467	152	1	38	504	76	541	672

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Find 124 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTGGTCTCCCTAAACT+CGG	0.656499	4.2:+5178646	MS.gene048887:CDS
AAATGTCAGAGTCTGAAGTA+AGG	0.520106	4.2:+5178674	MS.gene048887:CDS
AAATTCGCCTCTTAAGGCCA+CGG	0.571334	4.2:+5175402	MS.gene048887:CDS
AACAGAGTGTTTATCTTCAT+AGG	0.410938	4.2:-5175191	None:intergenic
AAGTGCTGCGTAAAAGTTAT+GGG	0.427821	4.2:+5175869	MS.gene048887:CDS
AATAATACCCGCTCTTATCT+TGG	0.374296	4.2:-5179322	None:intergenic
AATACTCAAAGGCTTTATAT+AGG	0.435211	4.2:-5179295	None:intergenic
ACACTCTGTTAATCTTGTTA+TGG	0.356554	4.2:+5175204	MS.gene048887:CDS
ACCCATATTATACTTCTTAA+GGG	0.395924	4.2:-5179454	None:intergenic
ACCCTTACCCACCGCTGCAC+TGG	0.353510	4.2:+5174925	MS.gene048887:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACACTCTGTTAATCTTGTTA+TGG	+	chr4.2:5175204-5175223	MS.gene048887:CDS	30.0%
ACATTATGACTTTGGCAAAT+AGG	+	chr4.2:5176763-5176782	MS.gene048887:intron	30.0%
AGAACCAATAACCTATCTTA+TGG	-	chr4.2:5178746-5178765	None:intergenic	30.0%
AGCATTTACTTAGAAAGGAA+AGG	-	chr4.2:5175981-5176000	None:intergenic	30.0%
ATCTTGGTCAAAATACTCAA+AGG	-	chr4.2:5179309-5179328	None:intergenic	30.0%
ATGATGTGAAGAAAATGAAC+AGG	+	chr4.2:5176948-5176967	MS.gene048887:intron	30.0%
ATTTATAATAAGTGGGACTG+TGG	+	chr4.2:5175697-5175716	MS.gene048887:intron	30.0%
CACCCATATTATACTTCTTA+AGG	-	chr4.2:5179458-5179477	None:intergenic	30.0%
CATTATGAACTATAGTTGCA+TGG	+	chr4.2:5176064-5176083	MS.gene048887:intron	30.0%
CATTATGACTTTGGCAAATA+GGG	+	chr4.2:5176764-5176783	MS.gene048887:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	5174800	5179802	5174800	ID=MS.gene048887
chr4.2	mRNA	5174800	5179802	5174800	ID=MS.gene048887.t1;Parent=MS.gene048887
chr4.2	exon	5174800	5175454	5174800	ID=MS.gene048887.t1.exon1;Parent=MS.gene048887.t1
chr4.2	CDS	5174800	5175454	5174800	ID=cds.MS.gene048887.t1;Parent=MS.gene048887.t1
chr4.2	exon	5175821	5175964	5175821	ID=MS.gene048887.t1.exon2;Parent=MS.gene048887.t1
chr4.2	CDS	5175821	5175964	5175821	ID=cds.MS.gene048887.t1;Parent=MS.gene048887.t1
chr4.2	exon	5176959	5177111	5176959	ID=MS.gene048887.t1.exon3;Parent=MS.gene048887.t1
chr4.2	CDS	5176959	5177111	5176959	ID=cds.MS.gene048887.t1;Parent=MS.gene048887.t1
chr4.2	exon	5177654	5177769	5177654	ID=MS.gene048887.t1.exon4;Parent=MS.gene048887.t1
chr4.2	CDS	5177654	5177769	5177654	ID=cds.MS.gene048887.t1;Parent=MS.gene048887.t1
chr4.2	exon	5178544	5178711	5178544	ID=MS.gene048887.t1.exon5;Parent=MS.gene048887.t1
chr4.2	CDS	5178544	5178711	5178544	ID=cds.MS.gene048887.t1;Parent=MS.gene048887.t1
chr4.2	exon	5179209	5179336	5179209	ID=MS.gene048887.t1.exon6;Parent=MS.gene048887.t1
chr4.2	CDS	5179209	5179336	5179209	ID=cds.MS.gene048887.t1;Parent=MS.gene048887.t1
chr4.2	exon	5179425	5179524	5179425	ID=MS.gene048887.t1.exon7;Parent=MS.gene048887.t1
chr4.2	CDS	5179425	5179524	5179425	ID=cds.MS.gene048887.t1;Parent=MS.gene048887.t1
chr4.2	exon	5179722	5179802	5179722	ID=MS.gene048887.t1.exon8;Parent=MS.gene048887.t1
chr4.2	CDS	5179722	5179802	5179722	ID=cds.MS.gene048887.t1;Parent=MS.gene048887.t1

Gene Sequence

>MS.gene048887

ATGGGTGGCAATTGCAGCACCGGCGCCGGCGCCGGAATCAACACCACCACCACCCATTCCGATCCTCCACCCAAAAACGCCCCCACAATCCTCCCACAAAACTCCACTCCCTCACCCCCTCAACCACCCTTACCCACCGCTGCACTGGGCCGCATCCTCAACCGTCCAATGGAAGACGTTCGCTCCATCTTCATCTTCGGCCGCGAACTCGGCCGAGGCCAATTCGGCGTTACATATTTAGTAACCCACAAAGTCACCAAAGAACAATTCGCTTGTAAATCAATCGCTACACGTAAACTCATCAACCGTGACGATATTGATGATGTTCGCCGTGAGGTTCAGATCATGCATCATCTCACTGGTCACCGTAACATTGTTGAACTCAAAGGTGCCTATGAAGATAAACACTCTGTTAATCTTGTTATGGAGCTTTGTGCTGGTGGGGAACTTTTTGATCGGATTATTCTCAAAGGACATTACTCTGAACGTGCTGCTGCTAATCTTTGTCGTCAGATTGTTACCGTTGTTCATAATTGTCATACTATGGGAGTTATGCACAGGGACTTGAAACCTGAGAATTTCTTGTTTCTTGGTAAAGAAGAAAATTCGCCTCTTAAGGCCACGGATTTTGGTCTCTCTGTCTTTTTCAAACCAGGTTATTTTCATTTGTATTTGCTTACATTCGTGTTTGTTCATTTTTGGATTCATGACTTGTAAAATGTGATTAATAGAAGAGTTAATTTGTTAGTTGTTTGTTACTTGCTTAAGGCCCAGTCTTGTAAAAAGCTAAGATGATATCAGAGTCTATCCTTGATTAGGTTCACGCTTCAGATGTCTCTGCACGTGAGATGATGTGTTGAGAGTCTCTCCTTAGATAAGATATGACCTGAAAAATATATTTATAATAAGTGGGACTGTGGGAGGCAAGGCATTCATCACTGTCAAACTGGTTTTGTAAGAGCGGGTTGGTTTAAATAGAAAAACCTAACAGTTATAGTTTTATTTTGATTTATGGGAGCAGGAGATGTGTTTAAAGATCTTGTTGGGAGTGCCTATTATGTTGCTCCTGAAGTGCTGCGTAAAAGTTATGGGCCTGAAACTGATATTTGGAGTGCCGGAATTATATTATACATTCTGCTTTCTGGTGTCCCCCCCTTCTGGGCAGGTAAAGTCTCCTTCCTTTCCTTTCTAAGTAAATGCTCACAGCCTCAATTATTATACATATTTTTTTATTTGATAACATGCATTGTAGCATATATAGTTGCATTATGAACTATAGTTGCATGGAATGTAGGATGCTAATAATTGTAGTGTAGACTTGTTTGTTGGTGTGTTGAACCAAGTATCTCCAAAGTTTTAGTTGTTGGTTGGTTGGACGAAAAACGAATGTTGTGTACCTCGTAAGCTTCAATATGAGATTTTATTGGTGATTCGGTCTACAGACTAATTGCAGTTAATAATTTTGGCAGTCATTGCAGTCAACCGATTTAAAGCTGTTGGATAGTGATCGGTTGACTCACATTGTGTGTTAGGAACCCAAGAATTGAATTCCAAAGAACAGCAATGCTATTTGGCTCGACACCTTTTTCGTCGGAAACACGCGAATATATTAATTACCCAATCAAATAATGCTAACCATAAAAAGTCAAAGTGCTGGCCGGAAAACACGGCGCATGTGGAATAAAGCAACGGTGGTGATGCATTCGTCCACTCTCGTCTCGTACTACAAAGCATTTTTCTTCCAAAGAAATACCGATTTTATTAAGAAATACGATAGAATATGAGAGAATCTCTCCTCAAGGGGTTTCCCCTTCACGATAGAGAATACTCTATTCACAATTGCAATATTCGTAGATACTCTCTAAGCCTATACACATACTCTATAACTAATCCGAATACCAAACTAACTCAAACTTATAACTACATTAACTACTCCAATTTCCCTTTATTCTATATCATCATAACATTATGACTTTGGCAAATAGGGAAATTGAAATCTCAATCATGTTATATTTATTTGATGTTTAAGATTATTAGCTGCAGTAATTGCATCAAATACATTTTTGTTAAGCATGCAAGTTTTTTTTCCTTCTACCTGATTCACATGCTTTTGAAACTTCCCAATGTTTCTCACACCCATTTTTATCTATGATGTGAAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTTGCGTCGGATCCTTGGCCTTCTATATCAAGTAGTGCCAAAGATCTGGTCAAGAAGATGCTACGAGATGACGCTAAAGAACGGATATCAGCAGTTGAAGTACTCAGTAAGTCTAATTCTTCTAGTATACCAAAAGTGATTTGTTTTATCCAAAAGTGGTTTATCTTTTATTTTGATCATGTTGGCACTGAGGGAAATTCTGGCATTGATTGCTCACCTGGAAAGATTCTGATCATGTAGGGTATTAGTATTACACTACGATTCAGTGAGGCTGAGATAATGAACTGAAATAGGGTATGGATATTCAAAACAGCTGTATTTGATTCGACTCCTTCAATAAGAGAAAGAGGATGGAAATTTATTTGAACACCTAGAAACACTTAAATTCTACTCACAAGAAAAAAGAAAAAGAGCAAAGAAAGTTAGGTGGGTTAGGACAAACAAGTATGGTTCCTGCTTACTCCTGAACTTAGATTTTCTTCCGTCCTCGTGTATAATGTGCTCTTTTTTGTTGCTCTTTTACAACCCTGTGATAAGATGACTTTGCACCTATGCATTTGTCATTTTATATAAAGTATAGTATGCATGAGTTTATTCTTCTACTAACATTTTTAATCAACCAGTCATAACATGTTTTATATGCTCCAGATCATCCTTGGATAAGAGTAGATGGAGATGCATCTGACAAGCCTCTTGATATTGCTGTTTTGAGCAGAATGAAACAGTTCCGAGCAATGAACAAGCTAAAGAAAGTAGCTCTAAAGGTAAACCATCTTATATAATAATTTTTGTTGTCATGAACGTCATAATCAATCTTCAAGTAAAATATCTACACACTACCACTATAAATAAATAAATAAAAGGTATAAGGCATTCATAACTGAACTAGATCAAGAAATTGAATTCTGTTCTTCCTGTTAAATAATTTCAGCTTTGGCTGCTAGAGAATTTATTCCTTATTGGGCAACCTAACCATGAAGTGTGTTAAGGATAAATCAATAAATGATTAAGACCTTGTTTGGATAAACAGCTCAATTAAGCACTTATCATACAAGTGCTTATATACAAGTTATTTTTGTAACAAAAGATAAAATAAAGTCAAATTGTGTTCTTATATGCTAAAAGCTGTTTTTATAAGCTATCTTGGAGAGCTTATGAAAATAAGTGGAAAACAACTTATGGACATGTCATAGTTAGTTTCCATAACCTTTCCCCAACAGCCTCACAGGTGTTCATGTCATTAGATAAGTTCAAATAAATCATCCAAAACAGACCCTAAAATCCATGTGTCCAGGCTACAAAGCTGAAACTATCTTAAATACACTAAAAGCAATAATTACAAGAATCTCAAAATATTTGAATTATTGCAAGTACAAGATATTATCGGCCTATTTGTAATACTTGTTCTCCAACATAGTGTAACAGAAGTAGTAGATTATATAGTTTTATAATATGATTAAGATTTGTTGAAGGATTTGGTTTCTTACACAGCCTATCTAGCATAAAAAGACATCTCATAAGTATTTTATTTATCACAGGTTATCGCTGAAAATCTTTCTGAAGAAGAAATTATTGGCTTGAAAGAAATGTTCAAATCCATGGATACAGACAATAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTCCCTAAACTCGGTAGTAAAATGTCAGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGTAAGACTATTTCTTTTCTTCTTTGGGTATACCATAAGATAGGTTATTGGTTCTTCCTGAAGATGTATTGTGGTCTACATGTCTTGATAACTAGTGTTTGTGTTTAAAGGTTACTTAACATTTATTTCATCTTGTTTCTTCTACATTTTGACCTGAAACACTAAGCTCATTCTGTGCAATCTTATCTTTTGTCTTTGTTTCTAATTATGTGTCCAAGACTTAGTTTTTCACTTGCATGAAGTCTTATATGACGCAAATACAACTTTCTCACCTTTTGCATCTTGTCTTGTTGATAATCATTGGCATCCAAATCTTGTTTCATGCTTATAAAGAACTTGACTGTGTAAATTATTTATTCCCTTTATTTTCAAATAAATTTGCATCTCTGCATATGTAACAATTATGACGATGTAAATAGTATCTTTAAAGCTGCATGAAATTTGATCACGTGGTTACTACTTCTCTTGATTTTAAGATCATAATTATTTGGTTTTCAGGCTGACGTGGACAGTAATGGAACCATTGATTATATTGAGTTTATAACCGCTACAATGCATATGAATAGAATGGAAAGAGAGGATCACCTATATAAAGCCTTTGAGTATTTTGACCAAGATAAGAGCGGGTATTATTAATTTTTCGTTCAGAACTTATAGTTTAACAACATTATTGCAGTAGATGATGATTTAACATGTTTTCTTCTGGTTTTGAAGGTACATCACAAAGGAAGAGTTGGAATCTGCCCTTAAGAAGTATAATATGGGTGACGAGAACACAATAAAGGAGATCATTGCCGAAGTTGATACAGACAACGTACGTTGCTTCCTTGTTAACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGTTTATCTTTATATTGTTTGAATCACCAACTAACTCCACCAACACACTAATCAAGCAATTAATTTTATATTTCTATTCTTGTTCAGAAAATAAATTAATTATATTTCTTCTATTGTATATGCAGGATGCAAGAATTAACTATGATGAGTTTGTAGCTATGATGAGGAAAGGCAACCCAGATATAACCCACAGGCGTCGCAAATAA

Protein sequence

>MS.gene048887.t1

MGGNCSTGAGAGINTTTTHSDPPPKNAPTILPQNSTPSPPQPPLPTAALGRILNRPMEDVRSIFIFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLINRDDIDDVRREVQIMHHLTGHRNIVELKGAYEDKHSVNLVMELCAGGELFDRIILKGHYSERAAANLCRQIVTVVHNCHTMGVMHRDLKPENFLFLGKEENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRKSYGPETDIWSAGIILYILLSGVPPFWAENEQGIFDAILRGHIDFASDPWPSISSSAKDLVKKMLRDDAKERISAVEVLNHPWIRVDGDASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKMSESEVRQLMEAADVDSNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDQDKSGYITKEELESALKKYNMGDENTIKEIIAEVDTDNDARINYDEFVAMMRKGNPDITHRRRK