Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04936.t1 | RHN68173.1 | 96.5 | 537 | 15 | 2 | 1 | 535 | 60 | 594 | 6.20E-287 | 996.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04936.t1 | Q7Y1B6 | 68.0 | 543 | 152 | 9 | 1 | 529 | 41 | 575 | 1.6e-198 | 693.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04936.t1 | A0A072V8V6 | 96.5 | 537 | 15 | 2 | 1 | 535 | 13 | 547 | 4.5e-287 | 996.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene04936.t1 | TF | GRAS |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04936 | MS.gene04937 | 0.986092 | 1.20E-165 | -1.69E-46 |
MS.gene04936 | MS.gene63069 | 0.989492 | 2.35E-178 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04936.t1 | MTR_3g065980 | 97.579 | 537 | 9 | 2 | 1 | 535 | 13 | 547 | 0.0 | 1080 |
MS.gene04936.t1 | MTR_7g027190 | 36.015 | 522 | 270 | 13 | 39 | 528 | 184 | 673 | 3.43e-92 | 296 |
MS.gene04936.t1 | MTR_8g442410 | 35.338 | 399 | 214 | 12 | 154 | 529 | 149 | 526 | 1.73e-75 | 248 |
MS.gene04936.t1 | MTR_5g097480 | 37.436 | 390 | 207 | 8 | 157 | 528 | 174 | 544 | 4.38e-75 | 248 |
MS.gene04936.t1 | MTR_1g029420 | 36.554 | 383 | 212 | 8 | 161 | 528 | 226 | 592 | 1.87e-69 | 234 |
MS.gene04936.t1 | MTR_5g094450 | 34.293 | 417 | 232 | 10 | 134 | 528 | 136 | 532 | 1.64e-67 | 227 |
MS.gene04936.t1 | MTR_3g056110 | 36.340 | 388 | 214 | 10 | 157 | 528 | 172 | 542 | 1.75e-67 | 227 |
MS.gene04936.t1 | MTR_3g089055 | 34.987 | 383 | 218 | 8 | 161 | 528 | 204 | 570 | 6.14e-67 | 226 |
MS.gene04936.t1 | MTR_4g133660 | 33.681 | 383 | 224 | 8 | 160 | 527 | 175 | 542 | 7.33e-67 | 226 |
MS.gene04936.t1 | MTR_3g089055 | 34.987 | 383 | 218 | 8 | 161 | 528 | 199 | 565 | 7.54e-67 | 226 |
MS.gene04936.t1 | MTR_4g104020 | 34.085 | 399 | 218 | 11 | 154 | 528 | 143 | 520 | 1.36e-65 | 222 |
MS.gene04936.t1 | MTR_7g074650 | 37.467 | 379 | 199 | 11 | 164 | 530 | 442 | 794 | 1.84e-65 | 227 |
MS.gene04936.t1 | MTR_2g082090 | 34.704 | 389 | 217 | 8 | 157 | 527 | 209 | 578 | 9.65e-65 | 221 |
MS.gene04936.t1 | MTR_1g069725 | 35.659 | 387 | 213 | 10 | 152 | 527 | 101 | 462 | 4.85e-64 | 216 |
MS.gene04936.t1 | MTR_2g034250 | 29.602 | 402 | 252 | 6 | 147 | 529 | 197 | 586 | 3.24e-55 | 195 |
MS.gene04936.t1 | MTR_2g034280 | 29.750 | 400 | 251 | 7 | 147 | 529 | 190 | 576 | 3.44e-55 | 195 |
MS.gene04936.t1 | MTR_4g102790 | 32.487 | 394 | 228 | 9 | 154 | 527 | 286 | 661 | 1.08e-54 | 196 |
MS.gene04936.t1 | MTR_4g076020 | 35.013 | 377 | 198 | 10 | 164 | 528 | 88 | 429 | 4.80e-54 | 189 |
MS.gene04936.t1 | MTR_4g064120 | 31.175 | 417 | 255 | 8 | 128 | 526 | 222 | 624 | 2.48e-53 | 191 |
MS.gene04936.t1 | MTR_2g034260 | 28.218 | 404 | 254 | 6 | 147 | 529 | 197 | 585 | 4.87e-53 | 189 |
MS.gene04936.t1 | MTR_4g064150 | 31.387 | 411 | 249 | 8 | 135 | 527 | 337 | 732 | 5.56e-53 | 192 |
MS.gene04936.t1 | MTR_2g026250 | 29.771 | 393 | 236 | 9 | 157 | 529 | 225 | 597 | 5.86e-53 | 189 |
MS.gene04936.t1 | MTR_4g064180 | 30.732 | 410 | 252 | 8 | 135 | 526 | 229 | 624 | 6.39e-53 | 190 |
MS.gene04936.t1 | MTR_4g077760 | 34.286 | 385 | 221 | 12 | 157 | 528 | 190 | 555 | 1.33e-52 | 187 |
MS.gene04936.t1 | MTR_2g097410 | 31.156 | 398 | 234 | 6 | 151 | 527 | 362 | 740 | 5.27e-52 | 189 |
MS.gene04936.t1 | MTR_2g097350 | 31.633 | 392 | 238 | 6 | 150 | 527 | 264 | 639 | 4.63e-51 | 185 |
MS.gene04936.t1 | MTR_5g058860 | 33.985 | 409 | 210 | 15 | 154 | 527 | 113 | 496 | 1.17e-50 | 181 |
MS.gene04936.t1 | MTR_3g072710 | 31.591 | 421 | 232 | 12 | 148 | 534 | 108 | 506 | 1.65e-50 | 181 |
MS.gene04936.t1 | MTR_4g076140 | 29.773 | 440 | 244 | 9 | 148 | 528 | 36 | 469 | 2.21e-50 | 180 |
MS.gene04936.t1 | MTR_7g062120 | 30.612 | 392 | 236 | 8 | 155 | 528 | 367 | 740 | 1.08e-49 | 182 |
MS.gene04936.t1 | MTR_1g096030 | 32.117 | 411 | 218 | 17 | 154 | 528 | 74 | 459 | 1.33e-49 | 177 |
MS.gene04936.t1 | MTR_4g064160 | 29.716 | 387 | 244 | 6 | 155 | 527 | 311 | 683 | 6.66e-49 | 180 |
MS.gene04936.t1 | MTR_4g064200 | 30.769 | 390 | 238 | 9 | 153 | 527 | 277 | 649 | 1.13e-48 | 179 |
MS.gene04936.t1 | MTR_2g097310 | 31.122 | 392 | 240 | 8 | 150 | 527 | 262 | 637 | 1.62e-48 | 178 |
MS.gene04936.t1 | MTR_2g097467 | 29.870 | 385 | 245 | 7 | 154 | 527 | 283 | 653 | 1.32e-47 | 176 |
MS.gene04936.t1 | MTR_2g097473 | 30.155 | 388 | 240 | 9 | 154 | 527 | 283 | 653 | 3.60e-47 | 174 |
MS.gene04936.t1 | MTR_2g097390 | 30.513 | 390 | 241 | 8 | 152 | 527 | 267 | 640 | 1.08e-45 | 170 |
MS.gene04936.t1 | MTR_2g097463 | 29.016 | 386 | 249 | 6 | 153 | 527 | 283 | 654 | 2.18e-44 | 166 |
MS.gene04936.t1 | MTR_2g097380 | 29.167 | 384 | 229 | 9 | 150 | 527 | 214 | 560 | 2.26e-44 | 165 |
MS.gene04936.t1 | MTR_7g109580 | 26.835 | 395 | 262 | 5 | 147 | 529 | 176 | 555 | 1.78e-43 | 162 |
MS.gene04936.t1 | MTR_4g097080 | 27.865 | 384 | 247 | 6 | 161 | 528 | 134 | 503 | 2.93e-43 | 161 |
MS.gene04936.t1 | MTR_5g015490 | 28.894 | 398 | 247 | 6 | 153 | 528 | 107 | 490 | 1.39e-41 | 156 |
MS.gene04936.t1 | MTR_8g093070 | 32.642 | 386 | 219 | 13 | 157 | 527 | 136 | 495 | 9.86e-41 | 154 |
MS.gene04936.t1 | MTR_1g086970 | 25.672 | 409 | 258 | 9 | 146 | 529 | 92 | 479 | 8.60e-38 | 145 |
MS.gene04936.t1 | MTR_5g009080 | 34.685 | 222 | 131 | 3 | 148 | 360 | 44 | 260 | 6.35e-36 | 140 |
MS.gene04936.t1 | MTR_5g009080 | 38.182 | 165 | 89 | 3 | 364 | 528 | 327 | 478 | 1.33e-30 | 125 |
MS.gene04936.t1 | MTR_6g047750 | 30.256 | 390 | 231 | 11 | 159 | 528 | 294 | 662 | 5.09e-35 | 139 |
MS.gene04936.t1 | MTR_7g057230 | 29.187 | 418 | 249 | 12 | 131 | 527 | 265 | 656 | 8.78e-35 | 139 |
MS.gene04936.t1 | MTR_2g089100 | 26.253 | 419 | 242 | 11 | 154 | 527 | 46 | 442 | 1.88e-33 | 132 |
MS.gene04936.t1 | MTR_0092s0100 | 28.947 | 380 | 242 | 8 | 157 | 528 | 369 | 728 | 3.16e-33 | 134 |
MS.gene04936.t1 | MTR_0092s0100 | 28.947 | 380 | 242 | 8 | 157 | 528 | 372 | 731 | 3.22e-33 | 134 |
MS.gene04936.t1 | MTR_4g026485 | 26.913 | 379 | 242 | 10 | 161 | 528 | 270 | 624 | 2.46e-30 | 125 |
MS.gene04936.t1 | MTR_2g099110 | 27.342 | 395 | 242 | 9 | 161 | 528 | 75 | 451 | 3.40e-29 | 120 |
MS.gene04936.t1 | MTR_5g015950 | 25.935 | 428 | 238 | 11 | 161 | 527 | 36 | 445 | 3.96e-29 | 120 |
MS.gene04936.t1 | MTR_3g053270 | 25.935 | 428 | 238 | 11 | 161 | 527 | 36 | 445 | 3.96e-29 | 120 |
MS.gene04936.t1 | MTR_3g022830 | 39.752 | 161 | 83 | 3 | 369 | 529 | 291 | 437 | 9.74e-29 | 119 |
MS.gene04936.t1 | MTR_3g022830 | 30.622 | 209 | 131 | 3 | 161 | 360 | 26 | 229 | 2.17e-28 | 118 |
MS.gene04936.t1 | MTR_4g095500 | 25.352 | 426 | 241 | 11 | 161 | 527 | 60 | 467 | 3.18e-28 | 117 |
MS.gene04936.t1 | MTR_8g077940 | 26.943 | 386 | 245 | 13 | 157 | 528 | 179 | 541 | 7.72e-25 | 108 |
MS.gene04936.t1 | MTR_4g122240 | 55.238 | 105 | 37 | 3 | 147 | 251 | 23 | 117 | 4.97e-23 | 94.7 |
MS.gene04936.t1 | MTR_8g020840 | 24.372 | 398 | 252 | 10 | 161 | 529 | 172 | 549 | 7.29e-23 | 102 |
MS.gene04936.t1 | MTR_3g022005 | 39.130 | 92 | 54 | 1 | 438 | 529 | 37 | 126 | 1.36e-15 | 73.9 |
MS.gene04936.t1 | MTR_3g022580 | 34.746 | 118 | 75 | 1 | 412 | 529 | 69 | 184 | 6.63e-15 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04936.t1 | AT3G03450 | 63.704 | 540 | 145 | 11 | 3 | 529 | 45 | 546 | 0.0 | 666 |
MS.gene04936.t1 | AT2G01570 | 61.210 | 562 | 161 | 9 | 2 | 529 | 44 | 582 | 0.0 | 665 |
MS.gene04936.t1 | AT1G14920 | 60.909 | 550 | 154 | 7 | 1 | 532 | 27 | 533 | 0.0 | 657 |
MS.gene04936.t1 | AT1G66350 | 61.381 | 536 | 149 | 10 | 1 | 533 | 31 | 511 | 0.0 | 645 |
MS.gene04936.t1 | AT5G17490 | 58.364 | 538 | 162 | 12 | 1 | 529 | 33 | 517 | 0.0 | 589 |
MS.gene04936.t1 | AT5G48150 | 37.726 | 387 | 203 | 9 | 161 | 528 | 123 | 490 | 6.67e-76 | 248 |
MS.gene04936.t1 | AT5G48150 | 37.726 | 387 | 203 | 9 | 161 | 528 | 123 | 490 | 6.67e-76 | 248 |
MS.gene04936.t1 | AT5G48150 | 37.726 | 387 | 203 | 9 | 161 | 528 | 123 | 490 | 6.67e-76 | 248 |
MS.gene04936.t1 | AT5G48150 | 37.726 | 387 | 203 | 9 | 161 | 528 | 123 | 490 | 6.67e-76 | 248 |
MS.gene04936.t1 | AT2G04890 | 34.545 | 385 | 212 | 8 | 160 | 528 | 53 | 413 | 8.66e-69 | 227 |
MS.gene04936.t1 | AT1G50600 | 34.896 | 384 | 219 | 9 | 160 | 528 | 159 | 526 | 2.75e-68 | 229 |
MS.gene04936.t1 | AT1G50600 | 34.896 | 384 | 219 | 9 | 160 | 528 | 230 | 597 | 1.13e-67 | 229 |
MS.gene04936.t1 | AT1G50600 | 34.896 | 384 | 219 | 9 | 160 | 528 | 234 | 601 | 1.17e-67 | 229 |
MS.gene04936.t1 | AT3G54220 | 36.195 | 431 | 231 | 12 | 110 | 527 | 250 | 649 | 1.28e-67 | 230 |
MS.gene04936.t1 | AT5G41920 | 36.061 | 391 | 205 | 11 | 155 | 528 | 38 | 400 | 9.86e-65 | 216 |
MS.gene04936.t1 | AT1G21450 | 33.073 | 384 | 229 | 7 | 159 | 528 | 224 | 593 | 3.11e-61 | 212 |
MS.gene04936.t1 | AT4G17230 | 33.846 | 390 | 221 | 7 | 157 | 528 | 155 | 525 | 2.89e-60 | 208 |
MS.gene04936.t1 | AT4G17230 | 33.846 | 390 | 221 | 7 | 157 | 528 | 155 | 525 | 2.89e-60 | 208 |
MS.gene04936.t1 | AT5G59450 | 31.877 | 389 | 238 | 8 | 155 | 528 | 222 | 598 | 5.78e-56 | 198 |
MS.gene04936.t1 | AT1G50420 | 30.000 | 480 | 267 | 12 | 112 | 528 | 6 | 479 | 1.99e-53 | 188 |
MS.gene04936.t1 | AT1G07530 | 31.818 | 396 | 237 | 10 | 149 | 527 | 385 | 764 | 9.33e-53 | 191 |
MS.gene04936.t1 | AT3G46600 | 31.234 | 381 | 235 | 8 | 161 | 528 | 5 | 371 | 1.27e-51 | 181 |
MS.gene04936.t1 | AT1G63100 | 31.407 | 398 | 228 | 12 | 157 | 527 | 249 | 628 | 2.06e-51 | 186 |
MS.gene04936.t1 | AT1G63100 | 31.407 | 398 | 228 | 12 | 157 | 527 | 274 | 653 | 3.46e-51 | 186 |
MS.gene04936.t1 | AT3G46600 | 31.008 | 387 | 240 | 8 | 155 | 528 | 207 | 579 | 1.43e-50 | 182 |
MS.gene04936.t1 | AT3G46600 | 31.008 | 387 | 240 | 8 | 155 | 528 | 175 | 547 | 1.52e-50 | 182 |
MS.gene04936.t1 | AT1G55580 | 32.267 | 344 | 204 | 6 | 198 | 528 | 118 | 445 | 1.91e-50 | 179 |
MS.gene04936.t1 | AT1G07520 | 29.275 | 386 | 242 | 7 | 161 | 527 | 155 | 528 | 6.08e-49 | 177 |
MS.gene04936.t1 | AT1G07520 | 29.275 | 386 | 242 | 7 | 161 | 527 | 155 | 528 | 6.08e-49 | 177 |
MS.gene04936.t1 | AT1G07520 | 29.275 | 386 | 242 | 7 | 161 | 527 | 320 | 693 | 2.12e-48 | 178 |
MS.gene04936.t1 | AT1G07520 | 29.275 | 386 | 242 | 7 | 161 | 527 | 319 | 692 | 2.20e-48 | 178 |
MS.gene04936.t1 | AT5G66770 | 33.854 | 384 | 226 | 11 | 157 | 528 | 217 | 584 | 3.40e-48 | 176 |
MS.gene04936.t1 | AT2G29060 | 30.287 | 383 | 238 | 9 | 161 | 527 | 285 | 654 | 3.46e-47 | 174 |
MS.gene04936.t1 | AT2G29060 | 30.287 | 383 | 238 | 9 | 161 | 527 | 322 | 691 | 5.15e-47 | 174 |
MS.gene04936.t1 | AT2G29065 | 28.682 | 387 | 244 | 5 | 161 | 527 | 253 | 627 | 2.40e-46 | 172 |
MS.gene04936.t1 | AT2G37650 | 30.155 | 388 | 241 | 9 | 155 | 528 | 330 | 701 | 2.64e-45 | 170 |
MS.gene04936.t1 | AT2G37650 | 30.155 | 388 | 241 | 9 | 155 | 528 | 342 | 713 | 2.67e-45 | 170 |
MS.gene04936.t1 | AT4G08250 | 28.986 | 483 | 298 | 17 | 74 | 531 | 18 | 480 | 2.87e-44 | 163 |
MS.gene04936.t1 | AT4G37650 | 28.392 | 398 | 240 | 7 | 161 | 528 | 147 | 529 | 5.52e-44 | 164 |
MS.gene04936.t1 | AT3G50650 | 33.141 | 347 | 207 | 9 | 194 | 528 | 209 | 542 | 9.41e-44 | 163 |
MS.gene04936.t1 | AT5G52510 | 29.397 | 398 | 229 | 9 | 159 | 528 | 267 | 640 | 6.87e-42 | 159 |
MS.gene04936.t1 | AT3G49950 | 27.020 | 396 | 241 | 11 | 161 | 527 | 31 | 407 | 7.18e-31 | 124 |
MS.gene04936.t1 | AT4G36710 | 25.831 | 391 | 252 | 11 | 154 | 529 | 119 | 486 | 1.78e-27 | 115 |
MS.gene04936.t1 | AT4G00150 | 26.866 | 402 | 246 | 13 | 135 | 528 | 193 | 554 | 2.42e-27 | 116 |
MS.gene04936.t1 | AT3G60630 | 29.747 | 316 | 186 | 12 | 226 | 528 | 330 | 622 | 8.47e-27 | 115 |
MS.gene04936.t1 | AT2G45160 | 26.431 | 367 | 229 | 9 | 178 | 528 | 298 | 639 | 1.69e-26 | 114 |
MS.gene04936.t1 | AT3G13840 | 24.937 | 397 | 258 | 11 | 149 | 528 | 137 | 510 | 3.40e-18 | 88.2 |
Find 139 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATGACCCTTTGGCTTCTT+TGG | 0.092684 | 3.4:+67545836 | MS.gene04936:CDS |
GTTGATGTCGGAGATTTATT+TGG | 0.171636 | 3.4:+67546928 | MS.gene04936:CDS |
TTGCTGGTGGTGATGGTTAT+AGG | 0.196762 | 3.4:+67547110 | MS.gene04936:CDS |
TCGTCTTGTTCATACTTTAA+TGG | 0.200580 | 3.4:+67546085 | MS.gene04936:CDS |
AGAGTTCATGTTATTGATTT+TGG | 0.230040 | 3.4:+67546386 | MS.gene04936:CDS |
GATGAATCGATTGTTTCTTC+TGG | 0.269432 | 3.4:-67546257 | None:intergenic |
TGGGTTCGAACCGGTTCATT+TGG | 0.283884 | 3.4:+67547045 | MS.gene04936:CDS |
TGCTGGTGGTGATGGTTATA+GGG | 0.290318 | 3.4:+67547111 | MS.gene04936:CDS |
AATGACCCTTTGGCTTCTTT+GGG | 0.299832 | 3.4:+67545837 | MS.gene04936:CDS |
ACTTTGTTAGCTTTGTTTGC+TGG | 0.304267 | 3.4:+67547094 | MS.gene04936:CDS |
AATAATGGGTGTCTTATGTT+AGG | 0.308660 | 3.4:+67547142 | MS.gene04936:CDS |
GGTCGGATCTCAAGCATATT+CGG | 0.315210 | 3.4:-67546626 | None:intergenic |
TATAGGGTTGAGGAAAATAA+TGG | 0.321686 | 3.4:+67547127 | MS.gene04936:CDS |
GACATCGCCACCGCCGGTTC+TGG | 0.324530 | 3.4:-67545999 | None:intergenic |
ACCCAACCGATCTATATTCT+TGG | 0.326178 | 3.4:+67545769 | MS.gene04936:CDS |
AGCAAGTGCTTGTGCGAAAT+AGG | 0.327440 | 3.4:-67546216 | None:intergenic |
AATTCTAACTTGAACTCAAC+CGG | 0.340285 | 3.4:+67546881 | MS.gene04936:CDS |
TTCTCAAATCAATGACCCTT+TGG | 0.350334 | 3.4:+67545827 | MS.gene04936:CDS |
TGAACAGCTTGAGATGGTTA+TGG | 0.351890 | 3.4:+67545692 | MS.gene04936:CDS |
CGGTCTAGGATGGGTTCAGC+TGG | 0.354100 | 3.4:+67547025 | MS.gene04936:CDS |
TTGATGTCGGAGATTTATTT+GGG | 0.362186 | 3.4:+67546929 | MS.gene04936:CDS |
CGGGTTGGGTTCACCGAGTC+AGG | 0.367327 | 3.4:+67546901 | MS.gene04936:CDS |
ATCAATAACATGAACTCTTC+CGG | 0.369829 | 3.4:-67546381 | None:intergenic |
GGGTTCGAACCGGTTCATTT+GGG | 0.373116 | 3.4:+67547046 | MS.gene04936:CDS |
GAGAACTTTCTCAACTGAAC+CGG | 0.373578 | 3.4:-67546705 | None:intergenic |
AACTTGAACTCAACCGGGTT+GGG | 0.374159 | 3.4:+67546887 | MS.gene04936:CDS |
CTTTGACTCAATGGCGGTCT+AGG | 0.374930 | 3.4:+67547011 | MS.gene04936:CDS |
GAACAGCTTGAGATGGTTAT+GGG | 0.390884 | 3.4:+67545693 | MS.gene04936:CDS |
ATGAATCGATTGTTTCTTCT+GGG | 0.391052 | 3.4:-67546256 | None:intergenic |
CTTGTTGATACACAAGAAAC+TGG | 0.397184 | 3.4:+67546059 | MS.gene04936:CDS |
CCTCCTACGTTCCGGTTAAC+CGG | 0.402531 | 3.4:+67546470 | MS.gene04936:CDS |
GGTGGGTATGCAGCCATTCC+AGG | 0.406758 | 3.4:-67545930 | None:intergenic |
TATGATCTTAGCGCTATTCC+TGG | 0.412789 | 3.4:+67545912 | MS.gene04936:CDS |
TCATTGATTTGAGAAGAATC+AGG | 0.415906 | 3.4:-67545819 | None:intergenic |
GACTCAATGGCGGTCTAGGA+TGG | 0.416785 | 3.4:+67547015 | MS.gene04936:CDS |
CTCGAAGCTTTCGCCGGTGC+CGG | 0.421518 | 3.4:+67546362 | MS.gene04936:CDS |
CGCCTGCGGCGGTCCGATGC+CGG | 0.422904 | 3.4:-67546489 | None:intergenic |
GACTTGGTCTGAACCAGAAC+CGG | 0.426842 | 3.4:+67545986 | MS.gene04936:CDS |
GCGGTCCGATGCCGGTTAAC+CGG | 0.427022 | 3.4:-67546481 | None:intergenic |
GACGAGTTGTTAGCAGCATT+AGG | 0.430561 | 3.4:+67545624 | MS.gene04936:CDS |
GTCGGATCTCAAGCATATTC+GGG | 0.436067 | 3.4:-67546625 | None:intergenic |
CCCAACCGATCTATATTCTT+GGG | 0.437889 | 3.4:+67545770 | MS.gene04936:CDS |
GAAGTGCATGTGAAGAATTT+CGG | 0.439144 | 3.4:-67546285 | None:intergenic |
TTATTAGCTTCATTACAAAC+TGG | 0.451250 | 3.4:+67546173 | MS.gene04936:CDS |
GCTTTGTTTGCTGGTGGTGA+TGG | 0.452468 | 3.4:+67547103 | MS.gene04936:CDS |
GTTAACAGCAACAGCTTCAC+CGG | 0.459180 | 3.4:-67546648 | None:intergenic |
GCATTTGAACCCAAATGAAC+CGG | 0.461370 | 3.4:-67547055 | None:intergenic |
AATGTAAAGCTTCAGTAAAC+CGG | 0.462320 | 3.4:-67546808 | None:intergenic |
TTTCTCAACTGAACCGGGTC+GGG | 0.464834 | 3.4:-67546699 | None:intergenic |
CACTCATTGCTACTTCTGCT+TGG | 0.477277 | 3.4:+67547179 | MS.gene04936:CDS |
CAGCTAAGCGAATGAAGACT+TGG | 0.478448 | 3.4:+67545970 | MS.gene04936:CDS |
AGTTTATTCGATTCGCTAGA+GGG | 0.479255 | 3.4:+67546839 | MS.gene04936:CDS |
GGTGTTCAGTTCGAATTTCG+TGG | 0.481901 | 3.4:+67546572 | MS.gene04936:CDS |
GGGTTCAGCTGGGTTCGAAC+CGG | 0.481901 | 3.4:+67547036 | MS.gene04936:CDS |
CAAGCGCTGGCATTACGCCC+CGG | 0.482592 | 3.4:+67546443 | MS.gene04936:CDS |
GATGTCACCACCGGCGGTGG+TGG | 0.485090 | 3.4:+67546016 | MS.gene04936:CDS |
GACATGAGACTTTGACTCAA+TGG | 0.488320 | 3.4:+67547002 | MS.gene04936:CDS |
CATCATTGAAAGTGTTGTTG+AGG | 0.498758 | 3.4:-67545881 | None:intergenic |
GCCAGCGCTTATGCAAGCGC+TGG | 0.499517 | 3.4:+67546430 | MS.gene04936:CDS |
GTTAGCAGCATTAGGTTACA+AGG | 0.501092 | 3.4:+67545632 | MS.gene04936:CDS |
ACCCAAGAATATAGATCGGT+TGG | 0.502416 | 3.4:-67545771 | None:intergenic |
CAAGGTTCGTTCTTCAGACA+TGG | 0.505343 | 3.4:+67545650 | MS.gene04936:CDS |
GGCGATGTCACCACCGGCGG+TGG | 0.505386 | 3.4:+67546013 | MS.gene04936:CDS |
GCCAGCGCTTGCATAAGCGC+TGG | 0.505414 | 3.4:-67546431 | None:intergenic |
ATAATGGGTGTCTTATGTTA+GGG | 0.505618 | 3.4:+67547143 | MS.gene04936:CDS |
AACCGGCATCGGACCGCCGC+AGG | 0.507955 | 3.4:+67546487 | MS.gene04936:CDS |
ATAGGGTTGAGGAAAATAAT+GGG | 0.509069 | 3.4:+67547128 | MS.gene04936:CDS |
TTATGTTAGGGTGGCATACA+AGG | 0.510723 | 3.4:+67547155 | MS.gene04936:CDS |
AACATGAACTCTTCCGGCAC+CGG | 0.512483 | 3.4:-67546375 | None:intergenic |
GTCTTAAACAAGGGATGCAA+TGG | 0.515161 | 3.4:+67546408 | MS.gene04936:CDS |
CGGAACGTAGGAGGACCGCC+GGG | 0.517761 | 3.4:-67546461 | None:intergenic |
GTAAACCGGTCTACGAAAAC+CGG | 0.519994 | 3.4:-67546794 | None:intergenic |
GCTCAGCTTGCTCAGACAAT+CGG | 0.520538 | 3.4:+67546551 | MS.gene04936:CDS |
GAGTTTATTCGATTCGCTAG+AGG | 0.521091 | 3.4:+67546838 | MS.gene04936:CDS |
GAAGAACCCAAAGAAGCCAA+AGG | 0.525943 | 3.4:-67545843 | None:intergenic |
TGGTGATGGTTATAGGGTTG+AGG | 0.526589 | 3.4:+67547117 | MS.gene04936:CDS |
CCGGCGGTCCTCCTACGTTC+CGG | 0.526841 | 3.4:+67546462 | MS.gene04936:CDS |
TAACTTGAACTCAACCGGGT+TGG | 0.530293 | 3.4:+67546886 | MS.gene04936:CDS |
TACCGATGCTTTGCAACAAG+TGG | 0.530326 | 3.4:+67546517 | MS.gene04936:CDS |
CATTGATTTGAGAAGAATCA+GGG | 0.530327 | 3.4:-67545818 | None:intergenic |
AGAACTTTCTCAACTGAACC+GGG | 0.532923 | 3.4:-67546704 | None:intergenic |
GTCTGAACCAGAACCGGCGG+TGG | 0.534665 | 3.4:+67545992 | MS.gene04936:CDS |
ACTCAATGGCGGTCTAGGAT+GGG | 0.535484 | 3.4:+67547016 | MS.gene04936:CDS |
GAACAGTATCAGAAGAAAGA+TGG | 0.536773 | 3.4:-67545740 | None:intergenic |
GGTGGTGACATCGCCACCGC+CGG | 0.537422 | 3.4:-67546005 | None:intergenic |
AGGGTTGAGTTCAGTGAGCA+TGG | 0.538956 | 3.4:-67545799 | None:intergenic |
GGCGGTGGCGATGTCACCAC+CGG | 0.541132 | 3.4:+67546007 | MS.gene04936:CDS |
CCCAAGAATATAGATCGGTT+GGG | 0.541894 | 3.4:-67545770 | None:intergenic |
TGTAACGTGGTGGCTTATGA+AGG | 0.543460 | 3.4:+67546962 | MS.gene04936:CDS |
TGGCTTATGAAGGAGTGGAC+CGG | 0.547664 | 3.4:+67546972 | MS.gene04936:CDS |
GAACAAGAAGCGAATCATAA+CGG | 0.547991 | 3.4:+67546770 | MS.gene04936:CDS |
TCCCACTTGTTGCAAAGCAT+CGG | 0.548931 | 3.4:-67546519 | None:intergenic |
CCGGAACGTAGGAGGACCGC+CGG | 0.550263 | 3.4:-67546462 | None:intergenic |
CATACTATGTTAGCCCGACC+CGG | 0.551742 | 3.4:+67546686 | MS.gene04936:CDS |
ATGGGTAGTGCTCAAGAAGA+AGG | 0.552354 | 3.4:+67545711 | MS.gene04936:CDS |
GTACCCTGAGTTAACTCACT+TGG | 0.552518 | 3.4:-67547221 | None:intergenic |
ACGTTCCGGTTAACCGGCAT+CGG | 0.556259 | 3.4:+67546476 | MS.gene04936:CDS |
GGTCTAGGATGGGTTCAGCT+GGG | 0.557426 | 3.4:+67547026 | MS.gene04936:CDS |
TTGTTAGCTTTGTTTGCTGG+TGG | 0.558150 | 3.4:+67547097 | MS.gene04936:CDS |
GCTATTCTCGAAGCTTTCGC+CGG | 0.558838 | 3.4:+67546356 | MS.gene04936:CDS |
CTTGTATTCTCCACCACCGC+CGG | 0.561471 | 3.4:-67546026 | None:intergenic |
GGCTTATGAAGGAGTGGACC+GGG | 0.562784 | 3.4:+67546973 | MS.gene04936:CDS |
AAATGAGCGAATTTGAGATA+AGG | 0.566361 | 3.4:-67546320 | None:intergenic |
AAAGCTTGAACAGCTTGAGA+TGG | 0.568021 | 3.4:+67545686 | MS.gene04936:CDS |
ATTTGTTTGTAACAGTATTG+CGG | 0.580712 | 3.4:+67546595 | MS.gene04936:CDS |
CCGGTTAACCGGAACGTAGG+AGG | 0.584326 | 3.4:-67546470 | None:intergenic |
TCTTAGCGCTATTCCTGGAA+TGG | 0.585827 | 3.4:+67545917 | MS.gene04936:CDS |
AAGAACCCAAAGAAGCCAAA+GGG | 0.586989 | 3.4:-67545842 | None:intergenic |
CTTTCTCAACTGAACCGGGT+CGG | 0.589796 | 3.4:-67546700 | None:intergenic |
ATGCTTTGCAACAAGTGGGA+TGG | 0.590087 | 3.4:+67546522 | MS.gene04936:CDS |
GAGTCAGGATTTGTTGATGT+CGG | 0.593519 | 3.4:+67546916 | MS.gene04936:CDS |
GCACTTGCTAGAAGAATCTA+CGG | 0.594505 | 3.4:+67546230 | MS.gene04936:CDS |
CTGACTCGGTGAACCCAACC+CGG | 0.598687 | 3.4:-67546900 | None:intergenic |
GACATCAACAAATCCTGACT+CGG | 0.599006 | 3.4:-67546914 | None:intergenic |
TCGGTATTGTCCGCCTGCGG+CGG | 0.603762 | 3.4:-67546500 | None:intergenic |
GTATTCTCCACCACCGCCGG+TGG | 0.604682 | 3.4:-67546023 | None:intergenic |
TTGAACCCAAGAATATAGAT+CGG | 0.609769 | 3.4:-67545775 | None:intergenic |
CGGCATCGGACCGCCGCAGG+CGG | 0.610809 | 3.4:+67546490 | MS.gene04936:CDS |
ATTCTAACTTGAACTCAACC+GGG | 0.614255 | 3.4:+67546882 | MS.gene04936:CDS |
ACCGATGCTTTGCAACAAGT+GGG | 0.623495 | 3.4:+67546518 | MS.gene04936:CDS |
TGTGTATCAACAAGAACCAC+CGG | 0.627324 | 3.4:-67546050 | None:intergenic |
CGTGGTGGCTTATGAAGGAG+TGG | 0.627503 | 3.4:+67546967 | MS.gene04936:CDS |
AATATGCTTGAGATCCGACC+CGG | 0.629333 | 3.4:+67546629 | MS.gene04936:CDS |
GCGCTGGCATTACGCCCCGG+CGG | 0.637073 | 3.4:+67546446 | MS.gene04936:CDS |
AAGTCTCATGTCTTTCAACC+CGG | 0.637365 | 3.4:-67546991 | None:intergenic |
ATGGGTGTCTTATGTTAGGG+TGG | 0.639065 | 3.4:+67547146 | MS.gene04936:CDS |
GCATCGGTATTGTCCGCCTG+CGG | 0.640917 | 3.4:-67546503 | None:intergenic |
GGTGGTGGAGAATACAAGAC+CGG | 0.643290 | 3.4:+67546031 | MS.gene04936:CDS |
CAGCAACAGCTTCACCGGGT+CGG | 0.649987 | 3.4:-67546643 | None:intergenic |
TTAACAGCAACAGCTTCACC+GGG | 0.654245 | 3.4:-67546647 | None:intergenic |
AGAAGCGAATCATAACGGAC+CGG | 0.675008 | 3.4:+67546775 | MS.gene04936:CDS |
TTGGTCTGAACCAGAACCGG+CGG | 0.680584 | 3.4:+67545989 | MS.gene04936:CDS |
GGTGGCGATGTCACCACCGG+CGG | 0.684333 | 3.4:+67546010 | MS.gene04936:CDS |
ATGCCGGTTAACCGGAACGT+AGG | 0.689075 | 3.4:-67546473 | None:intergenic |
ATGAGACTTTGACTCAATGG+CGG | 0.698553 | 3.4:+67547005 | MS.gene04936:CDS |
GGTGGAGAATACAAGACCGG+TGG | 0.704648 | 3.4:+67546034 | MS.gene04936:CDS |
TAGACAGATATGTAACGTGG+TGG | 0.715009 | 3.4:+67546952 | MS.gene04936:CDS |
GGAACGTAGGAGGACCGCCG+GGG | 0.728118 | 3.4:-67546460 | None:intergenic |
GGGTAGACAGATATGTAACG+TGG | 0.750257 | 3.4:+67546949 | MS.gene04936:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | ATTTGTTTGTAACAGTATTG+CGG | + | chr3.4:67546595-67546614 | MS.gene04936:CDS | 25.0% |
!! | TTATTAGCTTCATTACAAAC+TGG | + | chr3.4:67546173-67546192 | MS.gene04936:CDS | 25.0% |
!!! | AGAGTTCATGTTATTGATTT+TGG | + | chr3.4:67546386-67546405 | MS.gene04936:CDS | 25.0% |
!!! | ATTGATTTTGGTCTTAAACA+AGG | + | chr3.4:67546398-67546417 | MS.gene04936:CDS | 25.0% |
!!! | TTGATTTTGGTCTTAAACAA+GGG | + | chr3.4:67546399-67546418 | MS.gene04936:CDS | 25.0% |
AATGTAAAGCTTCAGTAAAC+CGG | - | chr3.4:67546811-67546830 | None:intergenic | 30.0% | |
AATTCTAACTTGAACTCAAC+CGG | + | chr3.4:67546881-67546900 | MS.gene04936:CDS | 30.0% | |
ATAGGGTTGAGGAAAATAAT+GGG | + | chr3.4:67547128-67547147 | MS.gene04936:CDS | 30.0% | |
ATCAATAACATGAACTCTTC+CGG | - | chr3.4:67546384-67546403 | None:intergenic | 30.0% | |
TATAGGGTTGAGGAAAATAA+TGG | + | chr3.4:67547127-67547146 | MS.gene04936:CDS | 30.0% | |
TTGAACCCAAGAATATAGAT+CGG | - | chr3.4:67545778-67545797 | None:intergenic | 30.0% | |
TTGATGTCGGAGATTTATTT+GGG | + | chr3.4:67546929-67546948 | MS.gene04936:CDS | 30.0% | |
! | AAATGAGCGAATTTGAGATA+AGG | - | chr3.4:67546323-67546342 | None:intergenic | 30.0% |
! | ATGAATCGATTGTTTCTTCT+GGG | - | chr3.4:67546259-67546278 | None:intergenic | 30.0% |
! | CAACGATTGTTACGATTTTA+GGG | - | chr3.4:67546751-67546770 | None:intergenic | 30.0% |
! | TCAACGATTGTTACGATTTT+AGG | - | chr3.4:67546752-67546771 | None:intergenic | 30.0% |
! | TCGTCTTGTTCATACTTTAA+TGG | + | chr3.4:67546085-67546104 | MS.gene04936:CDS | 30.0% |
! | TTATGTTTTCTTCTTGAGGT+GGG | - | chr3.4:67545950-67545969 | None:intergenic | 30.0% |
!! | AATAATGGGTGTCTTATGTT+AGG | + | chr3.4:67547142-67547161 | MS.gene04936:CDS | 30.0% |
!! | ATAATGGGTGTCTTATGTTA+GGG | + | chr3.4:67547143-67547162 | MS.gene04936:CDS | 30.0% |
!! | CATTGATTTGAGAAGAATCA+GGG | - | chr3.4:67545821-67545840 | None:intergenic | 30.0% |
!! | TCATTGATTTGAGAAGAATC+AGG | - | chr3.4:67545822-67545841 | None:intergenic | 30.0% |
ATTCTAACTTGAACTCAACC+GGG | + | chr3.4:67546882-67546901 | MS.gene04936:CDS | 35.0% | |
CTTGTTGATACACAAGAAAC+TGG | + | chr3.4:67546059-67546078 | MS.gene04936:CDS | 35.0% | |
GAACAAGAAGCGAATCATAA+CGG | + | chr3.4:67546770-67546789 | MS.gene04936:CDS | 35.0% | |
GAACAGTATCAGAAGAAAGA+TGG | - | chr3.4:67545743-67545762 | None:intergenic | 35.0% | |
GAAGTGCATGTGAAGAATTT+CGG | - | chr3.4:67546288-67546307 | None:intergenic | 35.0% | |
GTTGATGTCGGAGATTTATT+TGG | + | chr3.4:67546928-67546947 | MS.gene04936:CDS | 35.0% | |
TTCTCAAATCAATGACCCTT+TGG | + | chr3.4:67545827-67545846 | MS.gene04936:CDS | 35.0% | |
! | AGTTTATTCGATTCGCTAGA+GGG | + | chr3.4:67546839-67546858 | MS.gene04936:CDS | 35.0% |
! | GATGAATCGATTGTTTCTTC+TGG | - | chr3.4:67546260-67546279 | None:intergenic | 35.0% |
! | GCTGTTATGTTTTCTTCTTG+AGG | - | chr3.4:67545954-67545973 | None:intergenic | 35.0% |
! | GTTATGTTTTCTTCTTGAGG+TGG | - | chr3.4:67545951-67545970 | None:intergenic | 35.0% |
!! | ACTTTGTTAGCTTTGTTTGC+TGG | + | chr3.4:67547094-67547113 | MS.gene04936:CDS | 35.0% |
!! | CATCATTGAAAGTGTTGTTG+AGG | - | chr3.4:67545884-67545903 | None:intergenic | 35.0% |
AAAGCTTGAACAGCTTGAGA+TGG | + | chr3.4:67545686-67545705 | MS.gene04936:CDS | 40.0% | |
AAGAACCCAAAGAAGCCAAA+GGG | - | chr3.4:67545845-67545864 | None:intergenic | 40.0% | |
AAGTCTCATGTCTTTCAACC+CGG | - | chr3.4:67546994-67547013 | None:intergenic | 40.0% | |
ACCCAACCGATCTATATTCT+TGG | + | chr3.4:67545769-67545788 | MS.gene04936:CDS | 40.0% | |
ACCCAAGAATATAGATCGGT+TGG | - | chr3.4:67545774-67545793 | None:intergenic | 40.0% | |
AGAACTTTCTCAACTGAACC+GGG | - | chr3.4:67546707-67546726 | None:intergenic | 40.0% | |
ATGAGACTTTGACTCAATGG+CGG | + | chr3.4:67547005-67547024 | MS.gene04936:CDS | 40.0% | |
CCCAACCGATCTATATTCTT+GGG | + | chr3.4:67545770-67545789 | MS.gene04936:CDS | 40.0% | |
CCCAAGAATATAGATCGGTT+GGG | - | chr3.4:67545773-67545792 | None:intergenic | 40.0% | |
GAACAGCTTGAGATGGTTAT+GGG | + | chr3.4:67545693-67545712 | MS.gene04936:CDS | 40.0% | |
GACATCAACAAATCCTGACT+CGG | - | chr3.4:67546917-67546936 | None:intergenic | 40.0% | |
GACATGAGACTTTGACTCAA+TGG | + | chr3.4:67547002-67547021 | MS.gene04936:CDS | 40.0% | |
GAGAACTTTCTCAACTGAAC+CGG | - | chr3.4:67546708-67546727 | None:intergenic | 40.0% | |
GCATTTGAACCCAAATGAAC+CGG | - | chr3.4:67547058-67547077 | None:intergenic | 40.0% | |
GTCTTAAACAAGGGATGCAA+TGG | + | chr3.4:67546408-67546427 | MS.gene04936:CDS | 40.0% | |
GTTAGCAGCATTAGGTTACA+AGG | + | chr3.4:67545632-67545651 | MS.gene04936:CDS | 40.0% | |
TAGACAGATATGTAACGTGG+TGG | + | chr3.4:67546952-67546971 | MS.gene04936:CDS | 40.0% | |
TATGATCTTAGCGCTATTCC+TGG | + | chr3.4:67545912-67545931 | MS.gene04936:CDS | 40.0% | |
TGAACAGCTTGAGATGGTTA+TGG | + | chr3.4:67545692-67545711 | MS.gene04936:CDS | 40.0% | |
TGTGTATCAACAAGAACCAC+CGG | - | chr3.4:67546053-67546072 | None:intergenic | 40.0% | |
TTATGTTAGGGTGGCATACA+AGG | + | chr3.4:67547155-67547174 | MS.gene04936:CDS | 40.0% | |
! | AATGACCCTTTGGCTTCTTT+GGG | + | chr3.4:67545837-67545856 | MS.gene04936:CDS | 40.0% |
! | GAGTTTATTCGATTCGCTAG+AGG | + | chr3.4:67546838-67546857 | MS.gene04936:CDS | 40.0% |
! | GCACTTGCTAGAAGAATCTA+CGG | + | chr3.4:67546230-67546249 | MS.gene04936:CDS | 40.0% |
!! | GAGTCAGGATTTGTTGATGT+CGG | + | chr3.4:67546916-67546935 | MS.gene04936:CDS | 40.0% |
!! | TTGTTAGCTTTGTTTGCTGG+TGG | + | chr3.4:67547097-67547116 | MS.gene04936:CDS | 40.0% |
AACTTGAACTCAACCGGGTT+GGG | + | chr3.4:67546887-67546906 | MS.gene04936:CDS | 45.0% | |
AATATGCTTGAGATCCGACC+CGG | + | chr3.4:67546629-67546648 | MS.gene04936:CDS | 45.0% | |
ACCGATGCTTTGCAACAAGT+GGG | + | chr3.4:67546518-67546537 | MS.gene04936:CDS | 45.0% | |
AGCAAGTGCTTGTGCGAAAT+AGG | - | chr3.4:67546219-67546238 | None:intergenic | 45.0% | |
ATGCTTTGCAACAAGTGGGA+TGG | + | chr3.4:67546522-67546541 | MS.gene04936:CDS | 45.0% | |
ATGGGTAGTGCTCAAGAAGA+AGG | + | chr3.4:67545711-67545730 | MS.gene04936:CDS | 45.0% | |
ATGGGTGTCTTATGTTAGGG+TGG | + | chr3.4:67547146-67547165 | MS.gene04936:CDS | 45.0% | |
CAAGGTTCGTTCTTCAGACA+TGG | + | chr3.4:67545650-67545669 | MS.gene04936:CDS | 45.0% | |
CAGCTAAGCGAATGAAGACT+TGG | + | chr3.4:67545970-67545989 | MS.gene04936:CDS | 45.0% | |
GAAGAACCCAAAGAAGCCAA+AGG | - | chr3.4:67545846-67545865 | None:intergenic | 45.0% | |
GACGAGTTGTTAGCAGCATT+AGG | + | chr3.4:67545624-67545643 | MS.gene04936:CDS | 45.0% | |
GGGTAGACAGATATGTAACG+TGG | + | chr3.4:67546949-67546968 | MS.gene04936:CDS | 45.0% | |
GGTCGGATCTCAAGCATATT+CGG | - | chr3.4:67546629-67546648 | None:intergenic | 45.0% | |
GGTGTTCAGTTCGAATTTCG+TGG | + | chr3.4:67546572-67546591 | MS.gene04936:CDS | 45.0% | |
GTAAACCGGTCTACGAAAAC+CGG | - | chr3.4:67546797-67546816 | None:intergenic | 45.0% | |
GTCGGATCTCAAGCATATTC+GGG | - | chr3.4:67546628-67546647 | None:intergenic | 45.0% | |
GTTAACAGCAACAGCTTCAC+CGG | - | chr3.4:67546651-67546670 | None:intergenic | 45.0% | |
TAACTTGAACTCAACCGGGT+TGG | + | chr3.4:67546886-67546905 | MS.gene04936:CDS | 45.0% | |
TACCGATGCTTTGCAACAAG+TGG | + | chr3.4:67546517-67546536 | MS.gene04936:CDS | 45.0% | |
TCTTAGCGCTATTCCTGGAA+TGG | + | chr3.4:67545917-67545936 | MS.gene04936:CDS | 45.0% | |
TGTAACGTGGTGGCTTATGA+AGG | + | chr3.4:67546962-67546981 | MS.gene04936:CDS | 45.0% | |
TTAACAGCAACAGCTTCACC+GGG | - | chr3.4:67546650-67546669 | None:intergenic | 45.0% | |
! | CAATGACCCTTTGGCTTCTT+TGG | + | chr3.4:67545836-67545855 | MS.gene04936:CDS | 45.0% |
! | CACTCATTGCTACTTCTGCT+TGG | + | chr3.4:67547179-67547198 | MS.gene04936:CDS | 45.0% |
! | TCCCACTTGTTGCAAAGCAT+CGG | - | chr3.4:67546522-67546541 | None:intergenic | 45.0% |
!! | AGAAGCGAATCATAACGGAC+CGG | + | chr3.4:67546775-67546794 | MS.gene04936:CDS | 45.0% |
!! | TGCTGGTGGTGATGGTTATA+GGG | + | chr3.4:67547111-67547130 | MS.gene04936:CDS | 45.0% |
!! | TGGTGATGGTTATAGGGTTG+AGG | + | chr3.4:67547117-67547136 | MS.gene04936:CDS | 45.0% |
!! | TTGCTGGTGGTGATGGTTAT+AGG | + | chr3.4:67547110-67547129 | MS.gene04936:CDS | 45.0% |
AACATGAACTCTTCCGGCAC+CGG | - | chr3.4:67546378-67546397 | None:intergenic | 50.0% | |
AGGGTTGAGTTCAGTGAGCA+TGG | - | chr3.4:67545802-67545821 | None:intergenic | 50.0% | |
CATACTATGTTAGCCCGACC+CGG | + | chr3.4:67546686-67546705 | MS.gene04936:CDS | 50.0% | |
CTTTCTCAACTGAACCGGGT+CGG | - | chr3.4:67546703-67546722 | None:intergenic | 50.0% | |
CTTTGACTCAATGGCGGTCT+AGG | + | chr3.4:67547011-67547030 | MS.gene04936:CDS | 50.0% | |
GCTATTCTCGAAGCTTTCGC+CGG | + | chr3.4:67546356-67546375 | MS.gene04936:CDS | 50.0% | |
TGGCTTATGAAGGAGTGGAC+CGG | + | chr3.4:67546972-67546991 | MS.gene04936:CDS | 50.0% | |
TTTCTCAACTGAACCGGGTC+GGG | - | chr3.4:67546702-67546721 | None:intergenic | 50.0% | |
! | ACTCAATGGCGGTCTAGGAT+GGG | + | chr3.4:67547016-67547035 | MS.gene04936:CDS | 50.0% |
! | GACTTGGTCTGAACCAGAAC+CGG | + | chr3.4:67545986-67546005 | MS.gene04936:CDS | 50.0% |
! | GCTCAGCTTGCTCAGACAAT+CGG | + | chr3.4:67546551-67546570 | MS.gene04936:CDS | 50.0% |
! | GGGTTCGAACCGGTTCATTT+GGG | + | chr3.4:67547046-67547065 | MS.gene04936:CDS | 50.0% |
! | TGGGTTCGAACCGGTTCATT+TGG | + | chr3.4:67547045-67547064 | MS.gene04936:CDS | 50.0% |
!! | GCTTTGTTTGCTGGTGGTGA+TGG | + | chr3.4:67547103-67547122 | MS.gene04936:CDS | 50.0% |
!! | GGTGGTGGAGAATACAAGAC+CGG | + | chr3.4:67546031-67546050 | MS.gene04936:CDS | 50.0% |
ACGTTCCGGTTAACCGGCAT+CGG | + | chr3.4:67546476-67546495 | MS.gene04936:CDS | 55.0% | |
CCTCCTACGTTCCGGTTAAC+CGG | + | chr3.4:67546470-67546489 | MS.gene04936:CDS | 55.0% | |
CGTGGTGGCTTATGAAGGAG+TGG | + | chr3.4:67546967-67546986 | MS.gene04936:CDS | 55.0% | |
CTTGTATTCTCCACCACCGC+CGG | - | chr3.4:67546029-67546048 | None:intergenic | 55.0% | |
GACTCAATGGCGGTCTAGGA+TGG | + | chr3.4:67547015-67547034 | MS.gene04936:CDS | 55.0% | |
GGCTTATGAAGGAGTGGACC+GGG | + | chr3.4:67546973-67546992 | MS.gene04936:CDS | 55.0% | |
GGTGGAGAATACAAGACCGG+TGG | + | chr3.4:67546034-67546053 | MS.gene04936:CDS | 55.0% | |
TTGGTCTGAACCAGAACCGG+CGG | + | chr3.4:67545989-67546008 | MS.gene04936:CDS | 55.0% | |
! | ATGCCGGTTAACCGGAACGT+AGG | - | chr3.4:67546476-67546495 | None:intergenic | 55.0% |
! | GGTCTAGGATGGGTTCAGCT+GGG | + | chr3.4:67547026-67547045 | MS.gene04936:CDS | 55.0% |
!! | ACGGACCGGTTTTCGTAGAC+CGG | + | chr3.4:67546789-67546808 | MS.gene04936:CDS | 55.0% |
CAGCAACAGCTTCACCGGGT+CGG | - | chr3.4:67546646-67546665 | None:intergenic | 60.0% | |
CCGGTTAACCGGAACGTAGG+AGG | - | chr3.4:67546473-67546492 | None:intergenic | 60.0% | |
GGGTTCAGCTGGGTTCGAAC+CGG | + | chr3.4:67547036-67547055 | MS.gene04936:CDS | 60.0% | |
GGTGGGTATGCAGCCATTCC+AGG | - | chr3.4:67545933-67545952 | None:intergenic | 60.0% | |
! | CGGTCTAGGATGGGTTCAGC+TGG | + | chr3.4:67547025-67547044 | MS.gene04936:CDS | 60.0% |
! | GCATCGGTATTGTCCGCCTG+CGG | - | chr3.4:67546506-67546525 | None:intergenic | 60.0% |
!! | CTGACTCGGTGAACCCAACC+CGG | - | chr3.4:67546903-67546922 | None:intergenic | 60.0% |
CTCGAAGCTTTCGCCGGTGC+CGG | + | chr3.4:67546362-67546381 | MS.gene04936:CDS | 65.0% | |
GCCAGCGCTTATGCAAGCGC+TGG | + | chr3.4:67546430-67546449 | MS.gene04936:CDS | 65.0% | |
GCCAGCGCTTGCATAAGCGC+TGG | - | chr3.4:67546434-67546453 | None:intergenic | 65.0% | |
GTATTCTCCACCACCGCCGG+TGG | - | chr3.4:67546026-67546045 | None:intergenic | 65.0% | |
GTCTGAACCAGAACCGGCGG+TGG | + | chr3.4:67545992-67546011 | MS.gene04936:CDS | 65.0% | |
TCGGTATTGTCCGCCTGCGG+CGG | - | chr3.4:67546503-67546522 | None:intergenic | 65.0% | |
! | CGGGTTGGGTTCACCGAGTC+AGG | + | chr3.4:67546901-67546920 | MS.gene04936:CDS | 65.0% |
! | GCGGTCCGATGCCGGTTAAC+CGG | - | chr3.4:67546484-67546503 | None:intergenic | 65.0% |
!! | CAAGCGCTGGCATTACGCCC+CGG | + | chr3.4:67546443-67546462 | MS.gene04936:CDS | 65.0% |
CCGGAACGTAGGAGGACCGC+CGG | - | chr3.4:67546465-67546484 | None:intergenic | 70.0% | |
CCGGCGGTCCTCCTACGTTC+CGG | + | chr3.4:67546462-67546481 | MS.gene04936:CDS | 70.0% | |
CGGAACGTAGGAGGACCGCC+GGG | - | chr3.4:67546464-67546483 | None:intergenic | 70.0% | |
GATGTCACCACCGGCGGTGG+TGG | + | chr3.4:67546016-67546035 | MS.gene04936:CDS | 70.0% | |
GGAACGTAGGAGGACCGCCG+GGG | - | chr3.4:67546463-67546482 | None:intergenic | 70.0% | |
GGCGGTGGCGATGTCACCAC+CGG | + | chr3.4:67546007-67546026 | MS.gene04936:CDS | 70.0% | |
GGTGGCGATGTCACCACCGG+CGG | + | chr3.4:67546010-67546029 | MS.gene04936:CDS | 70.0% | |
GGTGGTGACATCGCCACCGC+CGG | - | chr3.4:67546008-67546027 | None:intergenic | 70.0% | |
!! | GACATCGCCACCGCCGGTTC+TGG | - | chr3.4:67546002-67546021 | None:intergenic | 70.0% |
GGCGATGTCACCACCGGCGG+TGG | + | chr3.4:67546013-67546032 | MS.gene04936:CDS | 75.0% | |
! | AACCGGCATCGGACCGCCGC+AGG | + | chr3.4:67546487-67546506 | MS.gene04936:CDS | 75.0% |
! | GCGCTGGCATTACGCCCCGG+CGG | + | chr3.4:67546446-67546465 | MS.gene04936:CDS | 75.0% |
! | CGCCTGCGGCGGTCCGATGC+CGG | - | chr3.4:67546492-67546511 | None:intergenic | 80.0% |
!! | CGGCATCGGACCGCCGCAGG+CGG | + | chr3.4:67546490-67546509 | MS.gene04936:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 67545621 | 67547228 | 67545621 | ID=MS.gene04936 |
chr3.4 | mRNA | 67545621 | 67547228 | 67545621 | ID=MS.gene04936.t1;Parent=MS.gene04936 |
chr3.4 | exon | 67545621 | 67547228 | 67545621 | ID=MS.gene04936.t1.exon1;Parent=MS.gene04936.t1 |
chr3.4 | CDS | 67545621 | 67547228 | 67545621 | ID=cds.MS.gene04936.t1;Parent=MS.gene04936.t1 |
Gene Sequence |
Protein sequence |