Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04945.t1 | GAU42384.1 | 56.8 | 287 | 111 | 3 | 1 | 284 | 1 | 277 | 1.00E-78 | 303.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04945.t1 | Q9S9V9 | 45.3 | 243 | 123 | 2 | 20 | 256 | 180 | 418 | 5.1e-50 | 199.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04945.t1 | A0A2Z6NC97 | 56.8 | 287 | 111 | 3 | 1 | 284 | 1 | 277 | 7.5e-79 | 303.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04945 | MS.gene05847 | 0.802426 | 5.64E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04945.t1 | MTR_5g027890 | 55.939 | 261 | 112 | 2 | 1 | 261 | 1 | 258 | 1.28e-93 | 278 |
| MS.gene04945.t1 | MTR_6g015890 | 56.589 | 258 | 101 | 4 | 8 | 258 | 7 | 260 | 3.21e-92 | 276 |
| MS.gene04945.t1 | MTR_6g015900 | 54.275 | 269 | 111 | 5 | 8 | 269 | 4 | 267 | 3.66e-89 | 267 |
| MS.gene04945.t1 | MTR_3g080330 | 53.008 | 266 | 117 | 4 | 10 | 273 | 2 | 261 | 6.22e-88 | 263 |
| MS.gene04945.t1 | MTR_3g067615 | 55.720 | 271 | 106 | 5 | 19 | 287 | 3 | 261 | 1.12e-87 | 263 |
| MS.gene04945.t1 | MTR_3g067630 | 55.061 | 247 | 106 | 2 | 8 | 253 | 8 | 250 | 9.60e-86 | 260 |
| MS.gene04945.t1 | MTR_3g067625 | 54.651 | 258 | 112 | 2 | 1 | 257 | 1 | 254 | 2.19e-83 | 259 |
| MS.gene04945.t1 | MTR_3g067625 | 56.098 | 82 | 23 | 2 | 8 | 87 | 382 | 452 | 3.41e-18 | 84.7 |
| MS.gene04945.t1 | MTR_5g036740 | 48.736 | 277 | 123 | 3 | 10 | 273 | 2 | 272 | 6.19e-81 | 246 |
| MS.gene04945.t1 | MTR_3g065620 | 50.903 | 277 | 122 | 6 | 1 | 276 | 1 | 264 | 1.02e-79 | 243 |
| MS.gene04945.t1 | MTR_8g091730 | 49.084 | 273 | 118 | 5 | 1 | 259 | 2 | 267 | 3.88e-79 | 242 |
| MS.gene04945.t1 | MTR_1g045100 | 47.902 | 286 | 133 | 8 | 2 | 274 | 3 | 285 | 6.18e-76 | 233 |
| MS.gene04945.t1 | MTR_3g080310 | 50.973 | 257 | 110 | 4 | 10 | 259 | 2 | 249 | 8.35e-76 | 232 |
| MS.gene04945.t1 | MTR_3g080280 | 51.724 | 261 | 119 | 5 | 7 | 267 | 12 | 265 | 1.04e-75 | 233 |
| MS.gene04945.t1 | MTR_3g067645 | 52.206 | 272 | 120 | 6 | 1 | 270 | 2 | 265 | 3.29e-73 | 228 |
| MS.gene04945.t1 | MTR_1g044795 | 49.442 | 269 | 124 | 5 | 1 | 259 | 1 | 267 | 7.44e-73 | 226 |
| MS.gene04945.t1 | MTR_3g065820 | 49.430 | 263 | 127 | 4 | 1 | 259 | 1 | 261 | 1.26e-69 | 218 |
| MS.gene04945.t1 | MTR_2g018910 | 47.674 | 258 | 127 | 5 | 20 | 273 | 27 | 280 | 1.35e-67 | 214 |
| MS.gene04945.t1 | MTR_3g080360 | 44.867 | 263 | 131 | 4 | 1 | 258 | 21 | 274 | 1.70e-66 | 209 |
| MS.gene04945.t1 | MTR_3g067990 | 46.008 | 263 | 106 | 6 | 3 | 253 | 2 | 240 | 2.25e-65 | 206 |
| MS.gene04945.t1 | MTR_2g018950 | 44.484 | 281 | 133 | 6 | 20 | 288 | 23 | 292 | 8.95e-64 | 204 |
| MS.gene04945.t1 | MTR_3g065590 | 39.860 | 286 | 156 | 6 | 1 | 277 | 1 | 279 | 1.19e-63 | 203 |
| MS.gene04945.t1 | MTR_3g065610 | 40.299 | 268 | 149 | 5 | 1 | 259 | 1 | 266 | 2.34e-62 | 199 |
| MS.gene04945.t1 | MTR_3g080270 | 44.251 | 287 | 109 | 7 | 10 | 291 | 2 | 242 | 2.13e-61 | 195 |
| MS.gene04945.t1 | MTR_2g018940 | 45.703 | 256 | 123 | 6 | 20 | 268 | 24 | 270 | 4.39e-61 | 197 |
| MS.gene04945.t1 | MTR_8g006980 | 46.617 | 266 | 135 | 4 | 8 | 267 | 6 | 270 | 9.35e-60 | 191 |
| MS.gene04945.t1 | MTR_8g040130 | 47.085 | 223 | 93 | 5 | 19 | 233 | 8 | 213 | 1.25e-54 | 177 |
| MS.gene04945.t1 | MTR_2g095850 | 42.570 | 249 | 88 | 3 | 5 | 253 | 3 | 196 | 1.70e-53 | 173 |
| MS.gene04945.t1 | MTR_3g065850 | 46.696 | 227 | 114 | 5 | 9 | 231 | 7 | 230 | 8.64e-52 | 171 |
| MS.gene04945.t1 | MTR_3g080320 | 49.180 | 183 | 90 | 1 | 80 | 262 | 3 | 182 | 2.62e-51 | 167 |
| MS.gene04945.t1 | MTR_3g066090 | 57.516 | 153 | 60 | 2 | 1 | 149 | 1 | 152 | 3.98e-51 | 166 |
| MS.gene04945.t1 | MTR_3g065890 | 41.564 | 243 | 106 | 5 | 9 | 246 | 4 | 215 | 3.23e-49 | 163 |
| MS.gene04945.t1 | MTR_3g080350 | 58.696 | 138 | 55 | 1 | 19 | 154 | 63 | 200 | 3.63e-47 | 157 |
| MS.gene04945.t1 | MTR_2g019060 | 38.929 | 280 | 128 | 10 | 20 | 287 | 27 | 275 | 1.55e-46 | 158 |
| MS.gene04945.t1 | MTR_7g047530 | 40.299 | 268 | 102 | 7 | 3 | 268 | 5 | 216 | 2.28e-43 | 148 |
| MS.gene04945.t1 | MTR_7g451730 | 40.299 | 268 | 102 | 7 | 3 | 268 | 14 | 225 | 2.30e-43 | 148 |
| MS.gene04945.t1 | MTR_3g065730 | 38.431 | 255 | 124 | 5 | 11 | 262 | 8 | 232 | 6.86e-40 | 139 |
| MS.gene04945.t1 | MTR_3g065840 | 46.392 | 194 | 98 | 4 | 76 | 267 | 13 | 202 | 2.90e-36 | 129 |
| MS.gene04945.t1 | MTR_5g062080 | 38.587 | 184 | 95 | 3 | 1 | 177 | 1 | 173 | 1.44e-30 | 115 |
| MS.gene04945.t1 | MTR_5g062080 | 43.704 | 135 | 72 | 3 | 138 | 268 | 74 | 208 | 5.36e-20 | 87.0 |
| MS.gene04945.t1 | MTR_2g018900 | 34.545 | 220 | 93 | 4 | 20 | 234 | 28 | 201 | 2.35e-30 | 113 |
| MS.gene04945.t1 | MTR_3g065790 | 50.781 | 128 | 54 | 4 | 135 | 255 | 47 | 172 | 1.39e-22 | 92.4 |
| MS.gene04945.t1 | MTR_3g074900 | 27.113 | 284 | 194 | 7 | 14 | 289 | 3 | 281 | 3.51e-20 | 89.0 |
| MS.gene04945.t1 | MTR_3g036480 | 32.143 | 252 | 84 | 8 | 8 | 255 | 6 | 174 | 7.12e-20 | 86.3 |
| MS.gene04945.t1 | MTR_3g437220 | 31.301 | 246 | 103 | 8 | 8 | 252 | 7 | 187 | 2.11e-19 | 84.3 |
| MS.gene04945.t1 | MTR_5g098180 | 27.376 | 263 | 156 | 8 | 18 | 275 | 7 | 239 | 6.20e-19 | 84.3 |
| MS.gene04945.t1 | MTR_3g111170 | 39.568 | 139 | 67 | 3 | 113 | 250 | 12 | 134 | 1.21e-18 | 80.9 |
| MS.gene04945.t1 | MTR_4g130620 | 28.929 | 280 | 160 | 8 | 12 | 259 | 2 | 274 | 3.43e-18 | 83.2 |
| MS.gene04945.t1 | MTR_5g064480 | 27.419 | 248 | 169 | 5 | 21 | 262 | 10 | 252 | 1.20e-17 | 82.0 |
| MS.gene04945.t1 | MTR_8g044970 | 58.333 | 60 | 24 | 1 | 52 | 111 | 9 | 67 | 1.07e-14 | 68.2 |
| MS.gene04945.t1 | MTR_3g065630 | 41.284 | 109 | 45 | 2 | 159 | 267 | 27 | 116 | 1.95e-12 | 63.5 |
| MS.gene04945.t1 | MTR_8g006990 | 50.746 | 67 | 31 | 1 | 197 | 263 | 1 | 65 | 2.23e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04945.t1 | AT4G05460 | 42.857 | 280 | 147 | 6 | 1 | 275 | 1 | 272 | 2.18e-58 | 189 |
| MS.gene04945.t1 | AT4G05475 | 38.462 | 247 | 140 | 5 | 20 | 256 | 39 | 283 | 1.14e-46 | 159 |
| MS.gene04945.t1 | AT4G05470 | 38.403 | 263 | 144 | 8 | 20 | 267 | 45 | 304 | 1.35e-46 | 159 |
| MS.gene04945.t1 | AT4G05497 | 38.667 | 225 | 128 | 4 | 20 | 238 | 20 | 240 | 3.46e-37 | 132 |
| MS.gene04945.t1 | AT4G05490 | 37.037 | 270 | 157 | 7 | 1 | 266 | 10 | 270 | 1.76e-36 | 132 |
| MS.gene04945.t1 | AT4G03630 | 40.860 | 186 | 106 | 2 | 84 | 269 | 31 | 212 | 2.21e-33 | 122 |
| MS.gene04945.t1 | AT5G52480 | 42.487 | 193 | 106 | 3 | 81 | 273 | 18 | 205 | 1.37e-31 | 118 |
| MS.gene04945.t1 | AT5G52480 | 40.237 | 169 | 96 | 3 | 105 | 273 | 4 | 167 | 4.22e-23 | 94.7 |
| MS.gene04945.t1 | AT4G08980 | 27.178 | 287 | 193 | 7 | 20 | 293 | 9 | 292 | 2.63e-21 | 92.0 |
| MS.gene04945.t1 | AT4G08980 | 27.178 | 287 | 193 | 7 | 20 | 293 | 9 | 292 | 2.63e-21 | 92.0 |
| MS.gene04945.t1 | AT4G08980 | 27.178 | 287 | 193 | 7 | 20 | 293 | 9 | 292 | 2.63e-21 | 92.0 |
| MS.gene04945.t1 | AT4G08980 | 27.178 | 287 | 193 | 7 | 20 | 293 | 9 | 292 | 2.63e-21 | 92.0 |
| MS.gene04945.t1 | AT4G08980 | 27.178 | 287 | 193 | 7 | 20 | 293 | 9 | 292 | 2.63e-21 | 92.0 |
| MS.gene04945.t1 | AT5G57900 | 29.151 | 271 | 154 | 8 | 20 | 259 | 7 | 270 | 1.33e-17 | 81.6 |
| MS.gene04945.t1 | AT3G48880 | 24.082 | 245 | 155 | 4 | 10 | 234 | 2 | 235 | 8.01e-14 | 70.9 |
| MS.gene04945.t1 | AT3G48880 | 24.082 | 245 | 155 | 4 | 10 | 234 | 2 | 235 | 8.01e-14 | 70.9 |
| MS.gene04945.t1 | AT3G48880 | 24.082 | 245 | 155 | 4 | 10 | 234 | 2 | 235 | 8.01e-14 | 70.9 |
| MS.gene04945.t1 | AT4G03635 | 42.353 | 85 | 47 | 2 | 101 | 184 | 4 | 87 | 6.93e-12 | 60.8 |
Find 44 sgRNAs with CRISPR-Local
Find 47 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTTGAGCACCTTTAAAAT+AGG | 0.231925 | 3.4:-67314952 | None:intergenic |
| TCACATTCTGCATCCTTTGC+AGG | 0.281310 | 3.4:-67314352 | None:intergenic |
| TGATGGCTGTCCTCTTCTTC+AGG | 0.290914 | 3.4:+67315113 | MS.gene04945:CDS |
| GGTTTGCTTGCTATTCTTGA+TGG | 0.309412 | 3.4:+67315096 | MS.gene04945:CDS |
| CTAGGAAGTTGCAACCAATT+TGG | 0.321854 | 3.4:-67314388 | None:intergenic |
| TGAGATCTCGTAATCAATAT+AGG | 0.336111 | 3.4:+67314977 | MS.gene04945:CDS |
| GTTTGAGCACCTTTAAAATA+GGG | 0.350212 | 3.4:-67314951 | None:intergenic |
| ACTTCTTAGCTATGCATTCA+AGG | 0.371242 | 3.4:-67314651 | None:intergenic |
| GCAAATCTTTAATCTGTTCA+AGG | 0.373278 | 3.4:-67315194 | None:intergenic |
| CTATGCCTTCTTAATATCAT+AGG | 0.379295 | 3.4:+67315054 | MS.gene04945:CDS |
| TGAGTGAAAGTTTGAGGAAA+AGG | 0.385400 | 3.4:+67315169 | MS.gene04945:CDS |
| TGCACTTGTTACAATTTCAA+TGG | 0.385596 | 3.4:-67314446 | None:intergenic |
| TTAATTTGAGTGAAAGTTTG+AGG | 0.394134 | 3.4:+67315163 | MS.gene04945:CDS |
| AGCTTCTCTCTAAAATTCTA+TGG | 0.398461 | 3.4:-67314831 | None:intergenic |
| TATGCCATTGAACGTAGTTC+TGG | 0.410566 | 3.4:+67314583 | MS.gene04945:CDS |
| TGGCAAGCTTCAAGCATTGT+AGG | 0.419877 | 3.4:-67314804 | None:intergenic |
| AAAGCATAGCAGTGCCAAAT+TGG | 0.436385 | 3.4:+67314374 | MS.gene04945:CDS |
| CACATTCAAAATCAATCAAA+TGG | 0.436729 | 3.4:-67315327 | None:intergenic |
| GAGATCTCGTAATCAATATA+GGG | 0.440827 | 3.4:+67314978 | MS.gene04945:CDS |
| ATTTCAACTAAATCGTCATC+TGG | 0.446281 | 3.4:-67314553 | None:intergenic |
| CTCTAAAATTCTATGGCAGT+TGG | 0.460096 | 3.4:-67314824 | None:intergenic |
| TCTTCATAGTCGTAGACAAC+TGG | 0.476296 | 3.4:-67315222 | None:intergenic |
| ATGACCAGAACTACGTTCAA+TGG | 0.508680 | 3.4:-67314587 | None:intergenic |
| CCTTTAAAATAGGGCATGAT+CGG | 0.508776 | 3.4:-67314942 | None:intergenic |
| CATGTCAAGTTTGTCCTCAA+TGG | 0.514190 | 3.4:+67314467 | MS.gene04945:CDS |
| TTGCATATGTTCCACCATTG+AGG | 0.521427 | 3.4:-67314481 | None:intergenic |
| TGATGATCAAGTTTGTTACA+AGG | 0.524209 | 3.4:+67315275 | MS.gene04945:CDS |
| CATTTCCTATGATATTAAGA+AGG | 0.529364 | 3.4:-67315059 | None:intergenic |
| TCACTGCAAACATTCTTCAA+AGG | 0.539996 | 3.4:+67314416 | MS.gene04945:CDS |
| ACAGAGTCTCTTGAAGCTGT+TGG | 0.542349 | 3.4:+67314919 | MS.gene04945:CDS |
| ATGTTTGCAGTGATGTCTCT+AGG | 0.543825 | 3.4:-67314406 | None:intergenic |
| CAATATAGGGTGTATGATGT+TGG | 0.545972 | 3.4:+67314991 | MS.gene04945:CDS |
| GGAAATGAGCTCTCTAATGT+AGG | 0.548960 | 3.4:+67315075 | MS.gene04945:CDS |
| ATCTCATTCTATTCCTGCAA+AGG | 0.558036 | 3.4:+67314339 | MS.gene04945:CDS |
| GTCAAGTTTGTCCTCAATGG+TGG | 0.565004 | 3.4:+67314470 | MS.gene04945:CDS |
| ATATTAAGAGCCTGAAGAAG+AGG | 0.579383 | 3.4:-67315123 | None:intergenic |
| CGAATAGTTCGCCACATGAG+AGG | 0.579442 | 3.4:-67314508 | None:intergenic |
| CTTCAAGAGACTCTGTGGAT+AGG | 0.611492 | 3.4:-67314912 | None:intergenic |
| ATGTCCAGCACCTCTAGCTG+TGG | 0.612238 | 3.4:-67314877 | None:intergenic |
| GTATGATGTTGGTGATGATG+AGG | 0.633160 | 3.4:+67315002 | MS.gene04945:CDS |
| AACAGCTTCAAGAGACTCTG+TGG | 0.646444 | 3.4:-67314917 | None:intergenic |
| AATCGTCATCTGGAGTGTCA+AGG | 0.657240 | 3.4:-67314543 | None:intergenic |
| TCAATGGTGGAACATATGCA+AGG | 0.664034 | 3.4:+67314483 | MS.gene04945:CDS |
| TATGCAAGGATCCTCTCATG+TGG | 0.693401 | 3.4:+67314497 | MS.gene04945:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CATTTCCTATGATATTAAGA+AGG | - | chr3.4:67315062-67315081 | None:intergenic | 25.0% |
| !! | TTAATTTGAGTGAAAGTTTG+AGG | + | chr3.4:67315163-67315182 | MS.gene04945:CDS | 25.0% |
| ATTTCAACTAAATCGTCATC+TGG | - | chr3.4:67314556-67314575 | None:intergenic | 30.0% | |
| CTATGCCTTCTTAATATCAT+AGG | + | chr3.4:67315054-67315073 | MS.gene04945:CDS | 30.0% | |
| GAGATCTCGTAATCAATATA+GGG | + | chr3.4:67314978-67314997 | MS.gene04945:CDS | 30.0% | |
| GCAAATCTTTAATCTGTTCA+AGG | - | chr3.4:67315197-67315216 | None:intergenic | 30.0% | |
| GTTATTGCAAAAACAATGTC+TGG | + | chr3.4:67315030-67315049 | MS.gene04945:CDS | 30.0% | |
| TGAGATCTCGTAATCAATAT+AGG | + | chr3.4:67314977-67314996 | MS.gene04945:CDS | 30.0% | |
| ! | TGCACTTGTTACAATTTCAA+TGG | - | chr3.4:67314449-67314468 | None:intergenic | 30.0% |
| !! | AGCTTCTCTCTAAAATTCTA+TGG | - | chr3.4:67314834-67314853 | None:intergenic | 30.0% |
| !! | AGTTTGAGCACCTTTAAAAT+AGG | - | chr3.4:67314955-67314974 | None:intergenic | 30.0% |
| !! | GTTTGAGCACCTTTAAAATA+GGG | - | chr3.4:67314954-67314973 | None:intergenic | 30.0% |
| !! | TGATGATCAAGTTTGTTACA+AGG | + | chr3.4:67315275-67315294 | MS.gene04945:CDS | 30.0% |
| ACTTCTTAGCTATGCATTCA+AGG | - | chr3.4:67314654-67314673 | None:intergenic | 35.0% | |
| ATATTAAGAGCCTGAAGAAG+AGG | - | chr3.4:67315126-67315145 | None:intergenic | 35.0% | |
| ATCTCATTCTATTCCTGCAA+AGG | + | chr3.4:67314339-67314358 | MS.gene04945:CDS | 35.0% | |
| CAATATAGGGTGTATGATGT+TGG | + | chr3.4:67314991-67315010 | MS.gene04945:CDS | 35.0% | |
| TCACTGCAAACATTCTTCAA+AGG | + | chr3.4:67314416-67314435 | MS.gene04945:CDS | 35.0% | |
| TGAGTGAAAGTTTGAGGAAA+AGG | + | chr3.4:67315169-67315188 | MS.gene04945:CDS | 35.0% | |
| !! | CCTTTAAAATAGGGCATGAT+CGG | - | chr3.4:67314945-67314964 | None:intergenic | 35.0% |
| !! | CTCTAAAATTCTATGGCAGT+TGG | - | chr3.4:67314827-67314846 | None:intergenic | 35.0% |
| AAAGCATAGCAGTGCCAAAT+TGG | + | chr3.4:67314374-67314393 | MS.gene04945:CDS | 40.0% | |
| ATGACCAGAACTACGTTCAA+TGG | - | chr3.4:67314590-67314609 | None:intergenic | 40.0% | |
| ATGTTTGCAGTGATGTCTCT+AGG | - | chr3.4:67314409-67314428 | None:intergenic | 40.0% | |
| CATGTCAAGTTTGTCCTCAA+TGG | + | chr3.4:67314467-67314486 | MS.gene04945:CDS | 40.0% | |
| CTAGGAAGTTGCAACCAATT+TGG | - | chr3.4:67314391-67314410 | None:intergenic | 40.0% | |
| GGAAATGAGCTCTCTAATGT+AGG | + | chr3.4:67315075-67315094 | MS.gene04945:CDS | 40.0% | |
| TATGCCATTGAACGTAGTTC+TGG | + | chr3.4:67314583-67314602 | MS.gene04945:CDS | 40.0% | |
| TCTTCATAGTCGTAGACAAC+TGG | - | chr3.4:67315225-67315244 | None:intergenic | 40.0% | |
| TTGCATATGTTCCACCATTG+AGG | - | chr3.4:67314484-67314503 | None:intergenic | 40.0% | |
| ! | GAGAAATTTTCCACAGCTAG+AGG | + | chr3.4:67314867-67314886 | MS.gene04945:CDS | 40.0% |
| ! | TCAATGGTGGAACATATGCA+AGG | + | chr3.4:67314483-67314502 | MS.gene04945:CDS | 40.0% |
| !! | CCGATCATGCCCTATTTTAA+AGG | + | chr3.4:67314942-67314961 | MS.gene04945:CDS | 40.0% |
| !! | GGTTTGCTTGCTATTCTTGA+TGG | + | chr3.4:67315096-67315115 | MS.gene04945:CDS | 40.0% |
| !! | GTATGATGTTGGTGATGATG+AGG | + | chr3.4:67315002-67315021 | MS.gene04945:CDS | 40.0% |
| AACAGCTTCAAGAGACTCTG+TGG | - | chr3.4:67314920-67314939 | None:intergenic | 45.0% | |
| ACAGAGTCTCTTGAAGCTGT+TGG | + | chr3.4:67314919-67314938 | MS.gene04945:CDS | 45.0% | |
| CTTCAAGAGACTCTGTGGAT+AGG | - | chr3.4:67314915-67314934 | None:intergenic | 45.0% | |
| GTCAAGTTTGTCCTCAATGG+TGG | + | chr3.4:67314470-67314489 | MS.gene04945:CDS | 45.0% | |
| TATGCAAGGATCCTCTCATG+TGG | + | chr3.4:67314497-67314516 | MS.gene04945:CDS | 45.0% | |
| TCACATTCTGCATCCTTTGC+AGG | - | chr3.4:67314355-67314374 | None:intergenic | 45.0% | |
| ! | AATCGTCATCTGGAGTGTCA+AGG | - | chr3.4:67314546-67314565 | None:intergenic | 45.0% |
| ! | TGGCAAGCTTCAAGCATTGT+AGG | - | chr3.4:67314807-67314826 | None:intergenic | 45.0% |
| CGAATAGTTCGCCACATGAG+AGG | - | chr3.4:67314511-67314530 | None:intergenic | 50.0% | |
| TGATGGCTGTCCTCTTCTTC+AGG | + | chr3.4:67315113-67315132 | MS.gene04945:CDS | 50.0% | |
| !! | TTTTCCACAGCTAGAGGTGC+TGG | + | chr3.4:67314873-67314892 | MS.gene04945:CDS | 50.0% |
| ATGTCCAGCACCTCTAGCTG+TGG | - | chr3.4:67314880-67314899 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 67314334 | 67315338 | 67314334 | ID=MS.gene04945 |
| chr3.4 | mRNA | 67314334 | 67315338 | 67314334 | ID=MS.gene04945.t1;Parent=MS.gene04945 |
| chr3.4 | exon | 67314334 | 67314671 | 67314334 | ID=MS.gene04945.t1.exon1;Parent=MS.gene04945.t1 |
| chr3.4 | CDS | 67314334 | 67314671 | 67314334 | ID=cds.MS.gene04945.t1;Parent=MS.gene04945.t1 |
| chr3.4 | exon | 67314795 | 67315338 | 67314795 | ID=MS.gene04945.t1.exon2;Parent=MS.gene04945.t1 |
| chr3.4 | CDS | 67314795 | 67315338 | 67314795 | ID=cds.MS.gene04945.t1;Parent=MS.gene04945.t1 |
| Gene Sequence |
| Protein sequence |
