AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049471

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049471.t1 MTR_3g465990 93.235 340 23 0 1 340 1 340 0.0 665
MS.gene049471.t1 MTR_3g465980 92.059 340 27 0 1 340 1 340 0.0 657
MS.gene049471.t1 MTR_3g465950 73.469 343 88 1 1 340 1 343 0.0 521
MS.gene049471.t1 MTR_3g465910 70.845 343 94 3 1 340 1 340 0.0 514
MS.gene049471.t1 MTR_3g465930 69.653 346 100 3 1 342 1 345 0.0 509
MS.gene049471.t1 MTR_3g465880 66.859 347 106 4 1 340 1 345 1.06e-166 473
MS.gene049471.t1 MTR_3g465870 71.947 303 80 2 1 298 1 303 5.95e-159 452
MS.gene049471.t1 MTR_6g053810 55.491 346 138 8 4 339 5 344 2.58e-128 375
MS.gene049471.t1 MTR_4g055170 52.149 349 143 10 4 340 6 342 1.02e-112 335
MS.gene049471.t1 MTR_2g015430 33.626 342 203 11 9 340 1 328 1.38e-54 185
MS.gene049471.t1 MTR_8g096530 31.686 344 193 13 8 334 5 323 8.93e-41 148
MS.gene049471.t1 MTR_7g110610 31.722 331 167 11 17 342 12 288 2.02e-40 146
MS.gene049471.t1 MTR_1g040215 31.065 338 202 10 17 342 16 334 1.13e-37 140
MS.gene049471.t1 MTR_7g027175 31.085 341 199 14 17 343 23 341 7.34e-37 137
MS.gene049471.t1 MTR_1g081660 31.343 335 202 11 17 339 25 343 1.32e-36 137
MS.gene049471.t1 MTR_1g040175 30.973 339 203 10 17 343 16 335 4.06e-35 133
MS.gene049471.t1 MTR_3g071320 30.000 340 206 12 10 332 5 329 5.53e-35 132
MS.gene049471.t1 MTR_3g098980 31.003 329 198 13 16 334 20 329 2.38e-34 131
MS.gene049471.t1 MTR_5g076700 29.688 320 206 7 17 329 17 324 1.39e-33 129
MS.gene049471.t1 MTR_7g114520 30.539 334 208 11 17 340 18 337 2.25e-33 129
MS.gene049471.t1 MTR_1g040315 28.955 335 201 10 17 339 16 325 1.73e-32 125
MS.gene049471.t1 MTR_8g075610 30.769 325 203 12 17 335 1 309 3.28e-32 125
MS.gene049471.t1 MTR_7g114550 30.211 331 211 8 17 340 17 334 9.07e-32 124
MS.gene049471.t1 MTR_4g007540 28.739 341 209 14 8 335 1 320 1.45e-30 120
MS.gene049471.t1 MTR_7g114560 29.518 332 212 8 17 340 17 334 7.54e-30 119
MS.gene049471.t1 MTR_2g105330 26.822 343 212 12 8 335 1 319 1.28e-29 118
MS.gene049471.t1 MTR_7g114470 29.503 322 205 9 17 329 18 326 1.56e-29 118
MS.gene049471.t1 MTR_2g064495 26.822 343 212 12 8 335 1 319 3.15e-29 117
MS.gene049471.t1 MTR_1g053315 31.657 338 185 17 18 329 26 343 7.09e-29 116
MS.gene049471.t1 MTR_7g114490 29.967 307 193 9 17 315 17 309 4.11e-28 114
MS.gene049471.t1 MTR_3g112180 25.434 346 209 9 18 342 20 337 3.80e-26 108
MS.gene049471.t1 MTR_3g026950 27.300 337 203 12 20 334 12 328 8.23e-26 107
MS.gene049471.t1 MTR_7g085930 28.371 356 213 16 9 339 5 343 1.31e-24 104
MS.gene049471.t1 MTR_7g086000 29.129 333 200 14 18 331 12 327 1.65e-24 103
MS.gene049471.t1 MTR_1g040320 28.986 345 190 14 4 342 3 298 8.06e-24 101
MS.gene049471.t1 MTR_3g049150 27.809 356 212 15 9 342 1 333 1.37e-23 101
MS.gene049471.t1 MTR_0502s0010 32.500 200 123 5 147 342 44 235 4.08e-23 96.7
MS.gene049471.t1 MTR_7g084940 28.011 357 210 15 9 342 11 343 5.09e-23 99.8
MS.gene049471.t1 MTR_4g097090 29.825 285 165 12 68 334 65 332 2.14e-22 97.8
MS.gene049471.t1 MTR_7g085990 29.006 362 203 21 9 339 1 339 6.07e-22 96.7
MS.gene049471.t1 MTR_1g040195 25.444 338 198 10 17 343 16 310 1.49e-21 95.1
MS.gene049471.t1 MTR_4g127650 28.315 279 178 8 67 334 65 332 2.51e-21 94.7
MS.gene049471.t1 MTR_4g013050 26.006 323 184 10 18 334 12 285 1.61e-20 92.0
MS.gene049471.t1 MTR_7g084910 29.023 348 201 15 8 332 11 335 1.45e-18 86.7
MS.gene049471.t1 MTR_3g101960 28.070 285 169 11 68 334 68 334 3.04e-18 85.9
MS.gene049471.t1 MTR_3g101900 27.891 294 158 13 68 334 66 332 3.73e-18 85.5
MS.gene049471.t1 MTR_0190s0020 26.667 270 180 7 68 329 63 322 2.13e-17 83.2
MS.gene049471.t1 MTR_3g101930 29.749 279 164 12 69 329 71 335 2.33e-17 83.2
MS.gene049471.t1 MTR_5g090880 27.333 300 186 11 54 334 55 341 5.33e-17 82.0
MS.gene049471.t1 MTR_3g102020 26.523 279 181 10 68 334 69 335 5.90e-17 82.0
MS.gene049471.t1 MTR_4g022720 27.536 276 178 10 68 332 55 319 6.65e-17 81.6
MS.gene049471.t1 MTR_4g022670 27.083 288 179 11 68 336 55 330 7.89e-17 81.6
MS.gene049471.t1 MTR_4g022760 27.698 278 181 8 68 332 55 325 1.47e-16 80.5
MS.gene049471.t1 MTR_3g102010 26.316 285 178 11 68 334 65 335 7.04e-16 78.6
MS.gene049471.t1 MTR_4g022825 26.335 281 190 8 63 332 50 324 7.13e-16 78.6
MS.gene049471.t1 MTR_3g101970 25.455 275 173 9 69 334 70 321 2.09e-15 77.0
MS.gene049471.t1 MTR_7g114510 29.474 190 120 6 151 334 8 189 5.44e-15 75.1
MS.gene049471.t1 MTR_4g022800 28.169 284 170 13 68 331 55 324 7.16e-15 75.5
MS.gene049471.t1 MTR_0042s0190 28.736 174 120 3 169 342 1 170 1.49e-14 73.6
MS.gene049471.t1 MTR_7g056087 23.496 349 218 12 10 331 4 330 1.17e-13 72.0
MS.gene049471.t1 MTR_3g088420 26.182 275 179 8 68 331 55 316 1.97e-13 71.2
MS.gene049471.t1 MTR_8g041770 25.092 271 181 8 68 329 64 321 2.16e-13 71.2
MS.gene049471.t1 MTR_3g450710 25.347 288 190 11 68 338 65 344 4.01e-13 70.5
MS.gene049471.t1 MTR_7g114960 24.233 326 204 14 31 340 30 328 7.48e-13 69.7
MS.gene049471.t1 MTR_3g450690 24.561 285 193 8 68 338 72 348 1.30e-11 65.9
MS.gene049471.t1 MTR_0042s0230 37.383 107 59 3 17 123 16 114 5.24e-11 60.8
MS.gene049471.t1 MTR_4g094835 24.648 284 175 12 68 331 64 328 8.90e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049471.t1 AT5G07080 41.329 346 175 10 8 340 12 342 1.29e-79 250
MS.gene049471.t1 AT2G25150 41.176 340 176 9 8 337 11 336 1.51e-72 232
MS.gene049471.t1 AT2G23510 38.416 341 192 9 8 342 11 339 3.37e-69 223
MS.gene049471.t1 AT1G28680 36.812 345 193 10 10 343 4 334 5.73e-66 213
MS.gene049471.t1 AT3G47170 36.667 360 193 10 8 343 10 358 1.35e-65 214
MS.gene049471.t1 AT1G28680 37.101 345 192 10 10 343 4 334 2.11e-65 213
MS.gene049471.t1 AT3G62160 31.034 348 178 11 16 340 11 319 1.64e-45 160
MS.gene049471.t1 AT5G41040 30.973 339 204 11 8 334 15 335 3.21e-41 149
MS.gene049471.t1 AT5G41040 30.973 339 204 11 8 334 31 351 3.29e-41 150
MS.gene049471.t1 AT3G48720 30.372 349 213 13 5 342 4 333 7.24e-37 137
MS.gene049471.t1 AT5G17540 29.167 336 213 8 17 342 16 336 4.13e-36 136
MS.gene049471.t1 AT3G03480 30.030 333 211 8 17 342 26 343 8.26e-36 135
MS.gene049471.t1 AT5G63560 31.085 341 195 14 8 334 7 321 1.25e-33 129
MS.gene049471.t1 AT5G48930 28.280 343 208 12 8 335 1 320 3.83e-32 125
MS.gene049471.t1 AT2G40230 28.487 337 217 10 9 334 4 327 4.53e-30 119
MS.gene049471.t1 AT1G27620 27.066 351 207 8 9 339 8 329 4.21e-26 108
MS.gene049471.t1 AT2G19070 31.408 277 167 12 67 329 57 324 4.41e-23 99.8
MS.gene049471.t1 AT1G03390 27.463 335 220 10 20 343 32 354 5.39e-23 99.8
MS.gene049471.t1 AT1G65450 27.429 350 221 11 8 340 16 349 3.73e-22 97.1
MS.gene049471.t1 AT4G31910 26.444 329 188 15 28 323 29 336 1.47e-18 86.7
MS.gene049471.t1 AT5G07870 27.599 279 179 9 68 331 72 342 5.15e-17 82.0
MS.gene049471.t1 AT1G24430 27.344 256 146 14 69 315 63 287 1.04e-16 81.3
MS.gene049471.t1 AT1G32910 26.502 283 179 10 65 334 62 328 4.13e-16 79.3
MS.gene049471.t1 AT5G07860 26.894 264 158 10 68 315 72 316 4.24e-16 79.3
MS.gene049471.t1 AT4G15390 25.240 313 191 13 4 302 2 285 3.36e-15 76.6
MS.gene049471.t1 AT4G15390 25.240 313 191 13 4 302 2 285 3.36e-15 76.6
MS.gene049471.t1 AT5G47950 33.333 195 100 9 7 191 3 177 6.54e-15 75.9
MS.gene049471.t1 AT3G26040 25.523 239 143 11 56 283 44 258 2.22e-13 71.2
MS.gene049471.t1 AT5G07850 24.658 292 188 11 68 342 70 346 1.26e-12 68.9
MS.gene049471.t1 AT3G30280 29.381 194 110 9 7 189 3 180 5.39e-12 67.0
MS.gene049471.t1 AT5G42830 24.373 279 190 9 68 334 64 333 6.21e-12 66.6

Find 71 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTACCTAATGGTTATTA+TGG 0.094646 3.2:-56690872 MS.gene049471:CDS
CCTTTCTTCTATTAATTACT+TGG 0.240935 3.2:-56691437 MS.gene049471:CDS
CATCTTTCATTTCAAGCATT+AGG 0.254924 3.2:+56692445 None:intergenic
TCCTTGTTCATAGGGCATTC+TGG 0.255669 3.2:+56691154 None:intergenic
TTGTAGTGTTGTCTTGATTC+AGG 0.259276 3.2:+56691110 None:intergenic
AACAATTCATGATTCTAATT+CGG 0.274186 3.2:-56692307 MS.gene049471:CDS
AAATTATGGTGTTCCATTCT+TGG 0.284915 3.2:-56691479 MS.gene049471:CDS
ACAATTCATGATTCTAATTC+GGG 0.288860 3.2:-56692306 MS.gene049471:CDS
GCAACGGATTCCTTGTTCAT+AGG 0.293428 3.2:+56691145 None:intergenic
TGGGAAAGAGAGAGACTTAT+TGG 0.299884 3.2:-56691199 MS.gene049471:CDS
AACCCTAATGCAGAAAATTA+TGG 0.320011 3.2:-56691493 MS.gene049471:CDS
ATCTTTCATTTCAAGCATTA+GGG 0.347223 3.2:+56692446 None:intergenic
CTTTACCTAATGGTTATTAT+GGG 0.350671 3.2:-56690871 MS.gene049471:CDS
CGTTGTGGAGGTTTCACAAT+TGG 0.352015 3.2:-56691328 MS.gene049471:CDS
AACTTACCCTTTGGTGTTCA+AGG 0.353325 3.2:-56691362 MS.gene049471:CDS
TCCCCTTGCAAGTTCGATAA+TGG 0.359679 3.2:+56691249 None:intergenic
TTCATAGGGCATTCTGGAAA+TGG 0.370345 3.2:+56691160 None:intergenic
TGAAGGAAAGTGGAAATATA+AGG 0.398595 3.2:-56691024 MS.gene049471:CDS
TTAGCAATTGCTTCCAAGAA+TGG 0.403315 3.2:+56691466 None:intergenic
GGAGGTTTCACAATTGGAAT+GGG 0.414816 3.2:-56691322 MS.gene049471:CDS
ACAACTTTCGAAGCGATTGC+AGG 0.428496 3.2:-56690998 MS.gene049471:CDS
CACAGAAATTGCAAAACAAT+TGG 0.433505 3.2:-56691404 MS.gene049471:CDS
GAATTCCCATAATAACCATT+AGG 0.456288 3.2:+56690866 None:intergenic
GCTTAAGTTGAGTTTGATGA+AGG 0.461955 3.2:-56691041 MS.gene049471:CDS
TGAAGACAAAACTTACCCTT+TGG 0.463070 3.2:-56691371 MS.gene049471:CDS
CCAAGTAATTAATAGAAGAA+AGG 0.472045 3.2:+56691437 None:intergenic
TGGTATTAGACGCAACTTGA+AGG 0.474505 3.2:-56690903 MS.gene049471:CDS
CAAGTAATTAATAGAAGAAA+GGG 0.477354 3.2:+56691438 None:intergenic
CAACGGATTCCTTGTTCATA+GGG 0.488857 3.2:+56691146 None:intergenic
TTGAGTTTGATGAAGGAAAG+TGG 0.489083 3.2:-56691034 MS.gene049471:CDS
TTGTCACCTTGAACACCAAA+GGG 0.494129 3.2:+56691356 None:intergenic
CTCAAACTGTTCATGTATAC+CGG 0.499140 3.2:-56692335 MS.gene049471:CDS
TGGAGGTTTCACAATTGGAA+TGG 0.504371 3.2:-56691323 MS.gene049471:CDS
ATTCAAAGAAGCACTTTCAA+AGG 0.519773 3.2:-56692265 MS.gene049471:CDS
AATCATGAATTGTTGATGAC+CGG 0.519842 3.2:+56692316 None:intergenic
CCATAATAACCATTAGGTAA+AGG 0.523441 3.2:+56690872 None:intergenic
TCTACGTCTTGCAGGTAGAA+TGG 0.526428 3.2:-56691554 MS.gene049471:intron
GGTAGCTGTTTGATAAGCCA+TGG 0.532393 3.2:+56692467 None:intergenic
TTTGTCACCTTGAACACCAA+AGG 0.540211 3.2:+56691355 None:intergenic
ATGGTGAAACATGCTGATGA+TGG 0.543171 3.2:-56691535 MS.gene049471:CDS
AGCTTAATAATTTCATAGAG+TGG 0.547793 3.2:+56690794 None:intergenic
AAGCCATTATCGAACTTGCA+AGG 0.551949 3.2:-56691252 MS.gene049471:CDS
AGCCATTATCGAACTTGCAA+GGG 0.556732 3.2:-56691251 MS.gene049471:CDS
GTGACAAAATTTCGTTGTGG+AGG 0.564617 3.2:-56691340 MS.gene049471:CDS
GTGTTGCACGCTATCTGTGA+TGG 0.565670 3.2:-56691298 MS.gene049471:CDS
CACGCTATCTGTGATGGAGT+TGG 0.571894 3.2:-56691292 MS.gene049471:CDS
GAAAGTGAAAGAATACAAGA+AGG 0.574882 3.2:+56692393 None:intergenic
TCCAGAATGCCCTATGAACA+AGG 0.582940 3.2:-56691155 MS.gene049471:CDS
AAGCGATTGCAGGTTATGTG+TGG 0.585990 3.2:-56690988 MS.gene049471:CDS
GAGGTTTCACAATTGGAATG+GGG 0.588080 3.2:-56691321 MS.gene049471:CDS
GTGTTGTCTTGATTCAGGTA+AGG 0.593872 3.2:+56691115 None:intergenic
TCCCACACAGGTATCGTCGA+GGG 0.595299 3.2:+56691217 None:intergenic
AAACCTAGTATACCTGCAAG+AGG 0.599532 3.2:+56692225 None:intergenic
GCGTCTAATACCAGCTACAA+TGG 0.604485 3.2:+56690913 None:intergenic
GCCCTAAAACTTAACAACAA+TGG 0.606771 3.2:-56690950 MS.gene049471:CDS
AAGTTAGTGAGCTTGATGAA+AGG 0.608750 3.2:-56690817 MS.gene049471:CDS
CAGGTAAGGTGAAAATGCAA+CGG 0.615018 3.2:+56691129 None:intergenic
ATACATGAACAGTTTGAGCA+AGG 0.620162 3.2:+56692340 None:intergenic
AACCCTCGACGATACCTGTG+TGG 0.622732 3.2:-56691219 MS.gene049471:CDS
TTCCCACACAGGTATCGTCG+AGG 0.623361 3.2:+56691216 None:intergenic
GCCATTATCGAACTTGCAAG+GGG 0.631450 3.2:-56691250 MS.gene049471:CDS
GCTTCTTTGAATACATGACA+AGG 0.632259 3.2:+56692276 None:intergenic
TGGAGGGTGAAATGATAACA+AGG 0.634756 3.2:-56691063 MS.gene049471:CDS
AGTCTCTCTCTTTCCCACAC+AGG 0.635132 3.2:+56691205 None:intergenic
CGATTGCAGGTTATGTGTGG+AGG 0.638354 3.2:-56690985 MS.gene049471:CDS
ACAGTGCTGACCATTGTAGC+TGG 0.644789 3.2:-56690923 MS.gene049471:CDS
AGGTTTCACAATTGGAATGG+GGG 0.647131 3.2:-56691320 MS.gene049471:CDS
ACCCTCGACGATACCTGTGT+GGG 0.660118 3.2:-56691218 MS.gene049471:CDS
TTATTATGGGAATTCATGTG+TGG 0.669469 3.2:-56690858 MS.gene049471:CDS
CTTCTTTGAATACATGACAA+GGG 0.672661 3.2:+56692277 None:intergenic
AAGGTGACAAAATTTCGTTG+TGG 0.727402 3.2:-56691343 MS.gene049471:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTTTAATAAAAATTT+TGG - chr3.2:56691189-56691208 MS.gene049471:CDS 0.0%
!!! TAAATTTTAATAAAAATTTT+GGG - chr3.2:56691190-56691209 MS.gene049471:CDS 0.0%
!! TTATAAGAAAAAAAATGATT+AGG + chr3.2:56691173-56691192 None:intergenic 10.0%
!!! AAAAAAAGAATATCATATTT+TGG + chr3.2:56691518-56691537 None:intergenic 10.0%
!!! AAAAAAGAATATCATATTTT+GGG + chr3.2:56691517-56691536 None:intergenic 10.0%
!!! AAATTATGATTTTGTTTTAT+AGG + chr3.2:56691289-56691308 None:intergenic 10.0%
!!! GATATTCTTTTTTTTTTTTT+TGG - chr3.2:56691524-56691543 MS.gene049471:CDS 10.0%
!! AAACATTTGTATTTAATGAA+AGG + chr3.2:56691057-56691076 None:intergenic 15.0%
!! CTACCAAAAAAAAAAATATA+TGG - chr3.2:56691111-56691130 MS.gene049471:CDS 15.0%
!! TGAAATTCTGAATATTTATA+AGG + chr3.2:56691259-56691278 None:intergenic 15.0%
!! TTTCATAAAATATTCAAAAG+TGG + chr3.2:56691612-56691631 None:intergenic 15.0%
!!! AAAATTTATGTTAGCATTTT+CGG - chr3.2:56691382-56691401 MS.gene049471:CDS 15.0%
!!! AAATATTGTTTTAATATGGA+GGG - chr3.2:56692167-56692186 MS.gene049471:intron 15.0%
!!! AAATGTGATTTTATTTTGTA+AGG - chr3.2:56691442-56691461 MS.gene049471:CDS 15.0%
!!! AAATTAGTGTTGTTAAAATA+TGG - chr3.2:56691078-56691097 MS.gene049471:CDS 15.0%
!!! ATGTTGACATAAAATTTTAA+AGG + chr3.2:56691318-56691337 None:intergenic 15.0%
!!! CATCCATATATTTTTTTTTT+TGG + chr3.2:56691117-56691136 None:intergenic 15.0%
!!! GAAATATATTTTTTTAGATG+AGG - chr3.2:56691216-56691235 MS.gene049471:CDS 15.0%
!!! GAAGAAATATTGTTTTAATA+TGG - chr3.2:56692163-56692182 MS.gene049471:intron 15.0%
!! AACAATTCATGATTCTAATT+CGG - chr3.2:56690939-56690958 MS.gene049471:CDS 20.0%
!! CAAGTAATTAATAGAAGAAA+GGG + chr3.2:56691811-56691830 None:intergenic 20.0%
!! TATTAGAATGTCCATAAAAA+TGG - chr3.2:56691637-56691656 MS.gene049471:intron 20.0%
!!! ATGCTAACATAAATTTTACA+AGG + chr3.2:56691379-56691398 None:intergenic 20.0%
!!! ATTTTCCTTTAGCATTTTTA+AGG + chr3.2:56691409-56691428 None:intergenic 20.0%
!!! GAAATATTGTTTTAATATGG+AGG - chr3.2:56692166-56692185 MS.gene049471:intron 20.0%
!!! TAATATAAACCTTTAAAGGA+GGG - chr3.2:56691141-56691160 MS.gene049471:CDS 20.0%
!!! TATTTTACGAAAAATTGCAA+TGG - chr3.2:56691585-56691604 MS.gene049471:intron 20.0%
!!! TGCAATTTTTCGTAAAATAA+TGG + chr3.2:56691584-56691603 None:intergenic 20.0%
!!! TGCTAATGGAAAATTTTAAA+AGG + chr3.2:56691348-56691367 None:intergenic 20.0%
!!! TTCCATAAAATCCATTTTTA+TGG + chr3.2:56691651-56691670 None:intergenic 20.0%
!!! TTTTTTTTTTTGGTAGATAG+AGG + chr3.2:56691107-56691126 None:intergenic 20.0%
! ACAATTCATGATTCTAATTC+GGG - chr3.2:56690940-56690959 MS.gene049471:CDS 25.0%
! AGCTTAATAATTTCATAGAG+TGG + chr3.2:56692455-56692474 None:intergenic 25.0%
! ATCTTTCATTTCAAGCATTA+GGG + chr3.2:56690803-56690822 None:intergenic 25.0%
! CCAAGTAATTAATAGAAGAA+AGG + chr3.2:56691812-56691831 None:intergenic 25.0%
! CCTCTAATATAAACCTTTAA+AGG - chr3.2:56691137-56691156 MS.gene049471:CDS 25.0%
! CCTTTCTTCTATTAATTACT+TGG - chr3.2:56691809-56691828 MS.gene049471:intron 25.0%
! CTTTACCTAATGGTTATTAT+GGG - chr3.2:56692375-56692394 MS.gene049471:CDS 25.0%
!! CCTTTAAAGGTTTATATTAG+AGG + chr3.2:56691140-56691159 None:intergenic 25.0%
!! CTAATATAAACCTTTAAAGG+AGG - chr3.2:56691140-56691159 MS.gene049471:CDS 25.0%
!! GATGAGGTTAGATATATTTT+TGG - chr3.2:56691232-56691251 MS.gene049471:CDS 25.0%
!! TTTTATTATTATCCTCTTGC+AGG - chr3.2:56691009-56691028 MS.gene049471:CDS 25.0%
!!! ACCATTGTTGTTAAGTTTTA+GGG + chr3.2:56692300-56692319 None:intergenic 25.0%
!!! GTCCATAAAAATGGATTTTA+TGG - chr3.2:56691646-56691665 MS.gene049471:intron 25.0%
AAATTATGGTGTTCCATTCT+TGG - chr3.2:56691767-56691786 MS.gene049471:intron 30.0%
AACCCTAATGCAGAAAATTA+TGG - chr3.2:56691753-56691772 MS.gene049471:intron 30.0%
ACAAGGACTAAAAATGCTAA+TGG + chr3.2:56691362-56691381 None:intergenic 30.0%
CACAGAAATTGCAAAACAAT+TGG - chr3.2:56691842-56691861 MS.gene049471:intron 30.0%
CATCTTTCATTTCAAGCATT+AGG + chr3.2:56690804-56690823 None:intergenic 30.0%
CCATAATAACCATTAGGTAA+AGG + chr3.2:56692377-56692396 None:intergenic 30.0%
CCTTTACCTAATGGTTATTA+TGG - chr3.2:56692374-56692393 MS.gene049471:CDS 30.0%
CTTCTTTGAATACATGACAA+GGG + chr3.2:56690972-56690991 None:intergenic 30.0%
GAAAGTGAAAGAATACAAGA+AGG + chr3.2:56690856-56690875 None:intergenic 30.0%
GAATTCCCATAATAACCATT+AGG + chr3.2:56692383-56692402 None:intergenic 30.0%
TGAAGGAAAGTGGAAATATA+AGG - chr3.2:56692222-56692241 MS.gene049471:intron 30.0%
TTATTATGGGAATTCATGTG+TGG - chr3.2:56692388-56692407 MS.gene049471:CDS 30.0%
! ACACCATAATTTTCTGCATT+AGG + chr3.2:56691759-56691778 None:intergenic 30.0%
! CACCATAATTTTCTGCATTA+GGG + chr3.2:56691758-56691777 None:intergenic 30.0%
!! AATCATGAATTGTTGATGAC+CGG + chr3.2:56690933-56690952 None:intergenic 30.0%
!! ATTCAAAGAAGCACTTTCAA+AGG - chr3.2:56690981-56691000 MS.gene049471:CDS 30.0%
!! CAAGAAGGAATTGATTTTGA+TGG + chr3.2:56690841-56690860 None:intergenic 30.0%
!! CACCATTGTTGTTAAGTTTT+AGG + chr3.2:56692301-56692320 None:intergenic 30.0%
!! GATTTTGATCCTTTACCTAA+TGG - chr3.2:56692365-56692384 MS.gene049471:CDS 30.0%
!! TTGTTTTGCAATTTCTGTGT+CGG + chr3.2:56691841-56691860 None:intergenic 30.0%
AAGGTGACAAAATTTCGTTG+TGG - chr3.2:56691903-56691922 MS.gene049471:intron 35.0%
AAGTTAGTGAGCTTGATGAA+AGG - chr3.2:56692429-56692448 MS.gene049471:CDS 35.0%
ATACATGAACAGTTTGAGCA+AGG + chr3.2:56690909-56690928 None:intergenic 35.0%
CTCAAACTGTTCATGTATAC+CGG - chr3.2:56690911-56690930 MS.gene049471:CDS 35.0%
GCCCTAAAACTTAACAACAA+TGG - chr3.2:56692296-56692315 MS.gene049471:CDS 35.0%
GCTTCTTTGAATACATGACA+AGG + chr3.2:56690973-56690992 None:intergenic 35.0%
TCGGTCCTTAAAAATGCTAA+AGG - chr3.2:56691401-56691420 MS.gene049471:CDS 35.0%
TGAAGACAAAACTTACCCTT+TGG - chr3.2:56691875-56691894 MS.gene049471:intron 35.0%
TTAGCAATTGCTTCCAAGAA+TGG + chr3.2:56691783-56691802 None:intergenic 35.0%
TTGAGTTTGATGAAGGAAAG+TGG - chr3.2:56692212-56692231 MS.gene049471:intron 35.0%
TTGTAGTGTTGTCTTGATTC+AGG + chr3.2:56692139-56692158 None:intergenic 35.0%
!! AAAGGGTAAGTTTTGTCTTC+AGG + chr3.2:56691876-56691895 None:intergenic 35.0%
!! GCTTAAGTTGAGTTTGATGA+AGG - chr3.2:56692205-56692224 MS.gene049471:intron 35.0%
AAACCTAGTATACCTGCAAG+AGG + chr3.2:56691024-56691043 None:intergenic 40.0%
AACATATCTCTACGTCTTGC+AGG - chr3.2:56691684-56691703 MS.gene049471:intron 40.0%
AAGCCATTATCGAACTTGCA+AGG - chr3.2:56691994-56692013 MS.gene049471:intron 40.0%
AGCCATTATCGAACTTGCAA+GGG - chr3.2:56691995-56692014 MS.gene049471:intron 40.0%
AGGTTTCACAATTGGAATGG+GGG - chr3.2:56691926-56691945 MS.gene049471:intron 40.0%
ATGGTGAAACATGCTGATGA+TGG - chr3.2:56691711-56691730 MS.gene049471:intron 40.0%
CAGGTAAGGTGAAAATGCAA+CGG + chr3.2:56692120-56692139 None:intergenic 40.0%
GAGGTTTCACAATTGGAATG+GGG - chr3.2:56691925-56691944 MS.gene049471:intron 40.0%
GGAGGTTTCACAATTGGAAT+GGG - chr3.2:56691924-56691943 MS.gene049471:intron 40.0%
GTGACAAAATTTCGTTGTGG+AGG - chr3.2:56691906-56691925 MS.gene049471:intron 40.0%
GTGTTGTCTTGATTCAGGTA+AGG + chr3.2:56692134-56692153 None:intergenic 40.0%
TATCCTCTTGCAGGTATACT+AGG - chr3.2:56691018-56691037 MS.gene049471:CDS 40.0%
TGGAGGGTGAAATGATAACA+AGG - chr3.2:56692183-56692202 MS.gene049471:intron 40.0%
TGGAGGTTTCACAATTGGAA+TGG - chr3.2:56691923-56691942 MS.gene049471:intron 40.0%
TGGGAAAGAGAGAGACTTAT+TGG - chr3.2:56692047-56692066 MS.gene049471:intron 40.0%
TGGTATTAGACGCAACTTGA+AGG - chr3.2:56692343-56692362 MS.gene049471:CDS 40.0%
TTGTCACCTTGAACACCAAA+GGG + chr3.2:56691893-56691912 None:intergenic 40.0%
TTTGTCACCTTGAACACCAA+AGG + chr3.2:56691894-56691913 None:intergenic 40.0%
! CAACGGATTCCTTGTTCATA+GGG + chr3.2:56692103-56692122 None:intergenic 40.0%
! TTCATAGGGCATTCTGGAAA+TGG + chr3.2:56692089-56692108 None:intergenic 40.0%
!! AACTTACCCTTTGGTGTTCA+AGG - chr3.2:56691884-56691903 MS.gene049471:intron 40.0%
AAGCGATTGCAGGTTATGTG+TGG - chr3.2:56692258-56692277 MS.gene049471:CDS 45.0%
ACAACTTTCGAAGCGATTGC+AGG - chr3.2:56692248-56692267 MS.gene049471:CDS 45.0%
AGGCATACACCCTCCTTTAA+AGG + chr3.2:56691153-56691172 None:intergenic 45.0%
CGTTGTGGAGGTTTCACAAT+TGG - chr3.2:56691918-56691937 MS.gene049471:intron 45.0%
GCCATTATCGAACTTGCAAG+GGG - chr3.2:56691996-56692015 MS.gene049471:intron 45.0%
GCGTCTAATACCAGCTACAA+TGG + chr3.2:56692336-56692355 None:intergenic 45.0%
TCCAGAATGCCCTATGAACA+AGG - chr3.2:56692091-56692110 MS.gene049471:intron 45.0%
TCCCCTTGCAAGTTCGATAA+TGG + chr3.2:56692000-56692019 None:intergenic 45.0%
TCTACGTCTTGCAGGTAGAA+TGG - chr3.2:56691692-56691711 MS.gene049471:intron 45.0%
! GCAACGGATTCCTTGTTCAT+AGG + chr3.2:56692104-56692123 None:intergenic 45.0%
! TCCTTGTTCATAGGGCATTC+TGG + chr3.2:56692095-56692114 None:intergenic 45.0%
AGTCTCTCTCTTTCCCACAC+AGG + chr3.2:56692044-56692063 None:intergenic 50.0%
CGATTGCAGGTTATGTGTGG+AGG - chr3.2:56692261-56692280 MS.gene049471:CDS 50.0%
GTGTTGCACGCTATCTGTGA+TGG - chr3.2:56691948-56691967 MS.gene049471:intron 50.0%
! CACGCTATCTGTGATGGAGT+TGG - chr3.2:56691954-56691973 MS.gene049471:intron 50.0%
!! ACAGTGCTGACCATTGTAGC+TGG - chr3.2:56692323-56692342 MS.gene049471:CDS 50.0%
AACCCTCGACGATACCTGTG+TGG - chr3.2:56692027-56692046 MS.gene049471:intron 55.0%
ACCCTCGACGATACCTGTGT+GGG - chr3.2:56692028-56692047 MS.gene049471:intron 55.0%
! TCCCACACAGGTATCGTCGA+GGG + chr3.2:56692032-56692051 None:intergenic 55.0%
! TTCCCACACAGGTATCGTCG+AGG + chr3.2:56692033-56692052 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 56690781 56692487 56690781 ID=MS.gene049471
chr3.2 mRNA 56690781 56692487 56690781 ID=MS.gene049471.t1;Parent=MS.gene049471
chr3.2 exon 56692238 56692487 56692238 ID=MS.gene049471.t1.exon1;Parent=MS.gene049471.t1
chr3.2 CDS 56692238 56692487 56692238 ID=cds.MS.gene049471.t1;Parent=MS.gene049471.t1
chr3.2 exon 56690781 56691562 56690781 ID=MS.gene049471.t1.exon2;Parent=MS.gene049471.t1
chr3.2 CDS 56690781 56691562 56690781 ID=cds.MS.gene049471.t1;Parent=MS.gene049471.t1
Gene Sequence

>MS.gene049471

ATGGCTTATCAAACAGCTACCCTAATGCTTGAAATGAAAGATGTTGTACTCATCAAACCATCAAAATCAATTCCTTCTTGTATTCTTTCACTTTCTACAATTGACAATAGAGAAATCTATAATAACCTTGCTCAAACTGTTCATGTATACCGGTCATCAACAATTCATGATTCTAATTCGGGTTTCGACCCTTGTCATGTATTCAAAGAAGCACTTTCAAAGGCTTTGTTTTATTATTATCCTCTTGCAGGTATACTAGGTTTTTTTTTTTTTCCTTTCATTAAATACAAATGTTTCAAATTAGTGTTGTTAAAATATGGATGCCTCTATCTACCAAAAAAAAAAATATATGGATGCCTCTAATATAAACCTTTAAAGGAGGGTGTATGCCTAATCATTTTTTTTCTTATAAATTTTAATAAAAATTTTGGGTTAGAAATATATTTTTTTAGATGAGGTTAGATATATTTTTGGTCCTTATAAATATTCAGAATTTCATTTAGTTCCTATAAAACAAAATCATAATTTTTAATACCTTTAAAATTTTATGTCAACATTTATAGTCCTTTTAAAATTTTCCATTAGCATTTTTAGTCCTTGTAAAATTTATGTTAGCATTTTCGGTCCTTAAAAATGCTAAAGGAAAATATTACAGAAACTAAAATGTGATTTTATTTTGTAAGGTCAAAAAACAAAATTGTAAATATTTATAGAGACAGAAAAACATATTTAACCCAAAATATGATATTCTTTTTTTTTTTTTTGGTACAATGATAGTCTTCTTTTAGTTATAGAAAAATCCATTATTTTACGAAAAATTGCAATGGTCCACTTTTGAATATTTTATGAAAGTCATTATTAGAATGTCCATAAAAATGGATTTTATGGAACACTAAACTAATTAACATATCTCTACGTCTTGCAGGTAGAATGGTGAAACATGCTGATGATGGAAAACTAAGAGTCAATTGCAACCCTAATGCAGAAAATTATGGTGTTCCATTCTTGGAAGCAATTGCTAACTGCACCCTTTCTTCTATTAATTACTTGGACAATACCGACACAGAAATTGCAAAACAATTGGTGATTGATCCTGAAGACAAAACTTACCCTTTGGTGTTCAAGGTGACAAAATTTCGTTGTGGAGGTTTCACAATTGGAATGGGGGTGTTGCACGCTATCTGTGATGGAGTTGGTGCATCTCAATTCTTCAAAGCCATTATCGAACTTGCAAGGGGAAGAAATGAACCCTCGACGATACCTGTGTGGGAAAGAGAGAGACTTATTGGATCAATAACTAAACAGCCATTTCCAGAATGCCCTATGAACAAGGAATCCGTTGCATTTTCACCTTACCTGAATCAAGACAACACTACAATTATGAAGAAATATTGTTTTAATATGGAGGGTGAAATGATAACAAGGCTTAAGTTGAGTTTGATGAAGGAAAGTGGAAATATAAGGTTCACAACTTTCGAAGCGATTGCAGGTTATGTGTGGAGGTCAAGAGCAAGAGCCCTAAAACTTAACAACAATGGTGAAACAGTGCTGACCATTGTAGCTGGTATTAGACGCAACTTGAAGGATTTTGATCCTTTACCTAATGGTTATTATGGGAATTCATGTGTGGATGCAAACACTGTGTTAAAAGTTAGTGAGCTTGATGAAAGGCCACTCTATGAAATTATTAAGCTCTGTGAGAACTGA
Protein sequence

>MS.gene049471.t1

MAYQTATLMLEMKDVVLIKPSKSIPSCILSLSTIDNREIYNNLAQTVHVYRSSTIHDSNSGFDPCHVFKEALSKALFYYYPLAGRMVKHADDGKLRVNCNPNAENYGVPFLEAIANCTLSSINYLDNTDTEIAKQLVIDPEDKTYPLVFKVTKFRCGGFTIGMGVLHAICDGVGASQFFKAIIELARGRNEPSTIPVWERERLIGSITKQPFPECPMNKESVAFSPYLNQDNTTIMKKYCFNMEGEMITRLKLSLMKESGNIRFTTFEAIAGYVWRSRARALKLNNNGETVLTIVAGIRRNLKDFDPLPNGYYGNSCVDANTVLKVSELDERPLYEIIKLCEN