Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049717.t1 | XP_003600583.1 | 82.2 | 174 | 12 | 2 | 1 | 155 | 122 | 295 | 7.60E-68 | 266.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049717.t1 | G7J777 | 82.2 | 174 | 12 | 2 | 1 | 155 | 122 | 295 | 5.4e-68 | 266.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049647 | MS.gene049717 | 0.812981 | 3.23E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049717.t1 | MTR_3g063940 | 82.184 | 174 | 12 | 2 | 1 | 155 | 122 | 295 | 1.22e-94 | 277 |
| MS.gene049717.t1 | MTR_3g063940 | 76.259 | 139 | 14 | 2 | 1 | 120 | 122 | 260 | 2.00e-67 | 206 |
| MS.gene049717.t1 | MTR_3g063950 | 61.310 | 168 | 46 | 1 | 1 | 149 | 117 | 284 | 9.48e-63 | 196 |
| MS.gene049717.t1 | MTR_7g114660 | 54.545 | 154 | 60 | 3 | 1 | 154 | 215 | 358 | 7.05e-45 | 151 |
| MS.gene049717.t1 | MTR_8g465010 | 51.948 | 154 | 64 | 3 | 1 | 154 | 210 | 353 | 1.09e-42 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049717.t1 | AT1G54520 | 48.052 | 154 | 70 | 3 | 1 | 154 | 216 | 359 | 1.33e-37 | 132 |
Find 29 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTATTAGTAGCTGTTAA+AGG | 0.298283 | 3.2:+59602470 | MS.gene049717:CDS |
| CCCTTTCTTCGTTTGATAGT+TGG | 0.308086 | 3.2:-59601724 | None:intergenic |
| CAATGGAGCTGAAGATTTAA+AGG | 0.319580 | 3.2:+59602514 | MS.gene049717:CDS |
| ATAATATTTGCTGGAGATAA+GGG | 0.328082 | 3.2:-59602558 | None:intergenic |
| GAGATAAGGGATTTAAGCTT+TGG | 0.349620 | 3.2:-59602545 | None:intergenic |
| AACTTACTAATAATATTTGC+TGG | 0.352519 | 3.2:-59602567 | None:intergenic |
| TTGTTTAAGGTTGGAATGTT+GGG | 0.396748 | 3.2:+59599155 | None:intergenic |
| TCTTCAGCTCCATTGATATC+AGG | 0.399327 | 3.2:-59602506 | None:intergenic |
| GGTTGGAATGTTGGGTGAGA+TGG | 0.404222 | 3.2:+59599163 | None:intergenic |
| GTTGTTTAAGGTTGGAATGT+TGG | 0.404885 | 3.2:+59599154 | None:intergenic |
| AATAATATTTGCTGGAGATA+AGG | 0.405102 | 3.2:-59602559 | None:intergenic |
| ACCAACTATCAAACGAAGAA+AGG | 0.449134 | 3.2:+59601723 | MS.gene049717:CDS |
| GTTGGAATGTTGGGTGAGAT+GGG | 0.460518 | 3.2:+59599164 | MS.gene049717:CDS |
| CATCATGGTTACTGTGTAGC+AGG | 0.472028 | 3.2:+59601550 | MS.gene049717:CDS |
| CCAACTATCAAACGAAGAAA+GGG | 0.512023 | 3.2:+59601724 | MS.gene049717:CDS |
| CATAAGCTACCTGATATCAA+TGG | 0.517314 | 3.2:+59602497 | MS.gene049717:CDS |
| GGTGTCTGCAATTTATTGAA+AGG | 0.521181 | 3.2:+59599248 | MS.gene049717:CDS |
| GATGGGATGTACAATACAAA+GGG | 0.528262 | 3.2:+59599181 | MS.gene049717:CDS |
| CAATACAAAGGGATCTAGCT+AGG | 0.535268 | 3.2:+59599192 | MS.gene049717:CDS |
| GACAGAGACAATGCAAACTC+TGG | 0.561585 | 3.2:+59601522 | MS.gene049717:intron |
| CAAACTCTGGATCAACATCA+TGG | 0.573366 | 3.2:+59601535 | MS.gene049717:CDS |
| AAACAGAGAAACTTCTCGAT+GGG | 0.579468 | 3.2:+59602062 | MS.gene049717:CDS |
| AGATGGGATGTACAATACAA+AGG | 0.598158 | 3.2:+59599180 | MS.gene049717:CDS |
| CTTAAACGAAGCAAGGACGA+TGG | 0.611188 | 3.2:+59601686 | MS.gene049717:CDS |
| GGTGGATCTTAAACGAAGCA+AGG | 0.623618 | 3.2:+59601679 | MS.gene049717:intron |
| GAAACAGAGAAACTTCTCGA+TGG | 0.624386 | 3.2:+59602061 | MS.gene049717:CDS |
| GCTAATACATCCTCTCGAGA+AGG | 0.635864 | 3.2:+59599227 | MS.gene049717:CDS |
| GTCTGACAACAAGTACATAG+TGG | 0.640574 | 3.2:+59602084 | MS.gene049717:CDS |
| ATTGCAGACACCTTCTCGAG+AGG | 0.669949 | 3.2:-59599237 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACACAAATATCTTAATTTAT+GGG | + | chr3.2:59599950-59599969 | MS.gene049717:intron | 15.0% |
| !! | TTCAAAAAACAAATGATTTA+CGG | - | chr3.2:59600343-59600362 | None:intergenic | 15.0% |
| !!! | TGTTTTAATATAAGTTTCTT+TGG | + | chr3.2:59601380-59601399 | MS.gene049717:intron | 15.0% |
| !! | AAGAAGAATATCAAATACAA+AGG | - | chr3.2:59601485-59601504 | None:intergenic | 20.0% |
| !! | ACATTTGTTTACTAAATTAC+CGG | - | chr3.2:59599748-59599767 | None:intergenic | 20.0% |
| !! | ATAAAAATTATATCATACCG+TGG | - | chr3.2:59601844-59601863 | None:intergenic | 20.0% |
| !! | ATATTATTAGTAGCTGTTAA+AGG | + | chr3.2:59602470-59602489 | MS.gene049717:CDS | 20.0% |
| !! | GACACAAATATCTTAATTTA+TGG | + | chr3.2:59599949-59599968 | MS.gene049717:intron | 20.0% |
| !! | GTAAAACCATTATAAATACA+GGG | + | chr3.2:59599552-59599571 | MS.gene049717:intron | 20.0% |
| !! | TGTAAAACCATTATAAATAC+AGG | + | chr3.2:59599551-59599570 | MS.gene049717:intron | 20.0% |
| !! | TTAAAAAAAAAGTAGAAGAG+TGG | + | chr3.2:59602344-59602363 | MS.gene049717:intron | 20.0% |
| !!! | ATAATTGTTTTTATGGTTGT+CGG | - | chr3.2:59601783-59601802 | None:intergenic | 20.0% |
| !!! | ATTGTTATTCATTTAATTCC+TGG | + | chr3.2:59599423-59599442 | MS.gene049717:intron | 20.0% |
| !!! | ATTTGATTTAATTTTTGCGT+TGG | + | chr3.2:59602141-59602160 | MS.gene049717:intron | 20.0% |
| !!! | CTTTTTTTTTTTTGTTAACC+CGG | - | chr3.2:59599479-59599498 | None:intergenic | 20.0% |
| !!! | GAACTTTATTTTATTCTACA+AGG | + | chr3.2:59601459-59601478 | MS.gene049717:intron | 20.0% |
| !!! | GCTTCTTATAATTGTTTTTA+TGG | - | chr3.2:59601790-59601809 | None:intergenic | 20.0% |
| ! | AAAGCTCTATAACTACTATT+TGG | - | chr3.2:59601973-59601992 | None:intergenic | 25.0% |
| ! | AATAACTTAAATTGTGTCTC+AGG | + | chr3.2:59600424-59600443 | MS.gene049717:intron | 25.0% |
| ! | AATCATCTCTTATAAACTGA+AGG | + | chr3.2:59599665-59599684 | MS.gene049717:intron | 25.0% |
| ! | AATTATGCAGAATTACACAA+AGG | - | chr3.2:59601310-59601329 | None:intergenic | 25.0% |
| ! | ATTATGCAGAATTACACAAA+GGG | - | chr3.2:59601309-59601328 | None:intergenic | 25.0% |
| ! | GAAAACTATTAGTTGGTTAA+TGG | - | chr3.2:59601998-59602017 | None:intergenic | 25.0% |
| ! | GAACAAAACATTATTACTTG+AGG | - | chr3.2:59601421-59601440 | None:intergenic | 25.0% |
| ! | GTTGTAATAACAATCAATCT+AGG | - | chr3.2:59599396-59599415 | None:intergenic | 25.0% |
| ! | TTATGAAATTGCAAAGTTGA+TGG | + | chr3.2:59600381-59600400 | MS.gene049717:intron | 25.0% |
| ! | TTTAATTGTGCTTCAATTCT+TGG | + | chr3.2:59601870-59601889 | MS.gene049717:intron | 25.0% |
| !! | AAAAAGAGTATACAACTTCT+AGG | + | chr3.2:59599493-59599512 | MS.gene049717:intron | 25.0% |
| !! | AATAATATTTGCTGGAGATA+AGG | - | chr3.2:59602562-59602581 | None:intergenic | 25.0% |
| !! | ATAATATTTGCTGGAGATAA+GGG | - | chr3.2:59602561-59602580 | None:intergenic | 25.0% |
| !! | ATAATTTGCAATCAGTTTGT+TGG | + | chr3.2:59601278-59601297 | MS.gene049717:intron | 25.0% |
| !! | ATGGAAAATAGAATTTTGCA+AGG | + | chr3.2:59600022-59600041 | MS.gene049717:intron | 25.0% |
| !! | TATGAAATTGCAAAGTTGAT+GGG | + | chr3.2:59600382-59600401 | MS.gene049717:intron | 25.0% |
| !! | TCTTAGAGTGTCATATAATT+AGG | - | chr3.2:59599304-59599323 | None:intergenic | 25.0% |
| !!! | GATGTAAATCGCTTTTTAAT+GGG | + | chr3.2:59600900-59600919 | MS.gene049717:intron | 25.0% |
| !!! | TCATTTGTTTTTTGAATGAG+CGG | + | chr3.2:59600347-59600366 | MS.gene049717:intron | 25.0% |
| AACTGCAGAAAACTATTAGT+TGG | - | chr3.2:59602005-59602024 | None:intergenic | 30.0% | |
| AAGGATGATCAAAGTTGTAT+CGG | + | chr3.2:59600296-59600315 | MS.gene049717:intron | 30.0% | |
| AATACTATGGTTGAAAACGA+TGG | - | chr3.2:59602204-59602223 | None:intergenic | 30.0% | |
| ATAGCCTATAGGTGTTAAAA+GGG | + | chr3.2:59601628-59601647 | MS.gene049717:intron | 30.0% | |
| ATTATGTTACAGTCTTACGT+TGG | + | chr3.2:59601124-59601143 | MS.gene049717:intron | 30.0% | |
| ATTTATGGGTAGAAAGAAAG+TGG | + | chr3.2:59599964-59599983 | MS.gene049717:intron | 30.0% | |
| CAATATCAGTTATAGCCTAT+AGG | + | chr3.2:59601617-59601636 | MS.gene049717:intron | 30.0% | |
| CTGCATACGTTCTTAAATAT+AGG | - | chr3.2:59599774-59599793 | None:intergenic | 30.0% | |
| GTATGTTGAACTTGTGAAAA+TGG | + | chr3.2:59599821-59599840 | MS.gene049717:intron | 30.0% | |
| GTCTCAATGATATCATAGAT+GGG | + | chr3.2:59600994-59601013 | MS.gene049717:intron | 30.0% | |
| GTTATTCATTTAATTCCTGG+TGG | + | chr3.2:59599426-59599445 | MS.gene049717:intron | 30.0% | |
| GTTTCAAATACTCTTTGTCA+TGG | + | chr3.2:59600625-59600644 | MS.gene049717:intron | 30.0% | |
| TAACGTTCTTAGATTTCCAA+GGG | + | chr3.2:59600787-59600806 | MS.gene049717:intron | 30.0% | |
| TATAGCCTATAGGTGTTAAA+AGG | + | chr3.2:59601627-59601646 | MS.gene049717:intron | 30.0% | |
| TCTCAATGATATCATAGATG+GGG | + | chr3.2:59600995-59601014 | MS.gene049717:intron | 30.0% | |
| TCTGCAATTTATTGAAAGGT+GGG | + | chr3.2:59599252-59599271 | MS.gene049717:intron | 30.0% | |
| TGATGAACAATATCTTTGTC+AGG | + | chr3.2:59601658-59601677 | MS.gene049717:intron | 30.0% | |
| TGTCTCAATGATATCATAGA+TGG | + | chr3.2:59600993-59601012 | MS.gene049717:intron | 30.0% | |
| TTATAAACTGAAGGTGAACT+TGG | + | chr3.2:59599674-59599693 | MS.gene049717:intron | 30.0% | |
| TTATGCAGAATTACACAAAG+GGG | - | chr3.2:59601308-59601327 | None:intergenic | 30.0% | |
| TTTATGGGTAGAAAGAAAGT+GGG | + | chr3.2:59599965-59599984 | MS.gene049717:intron | 30.0% | |
| ! | CCACTAATAAAGATTTTGCA+CGG | - | chr3.2:59600546-59600565 | None:intergenic | 30.0% |
| ! | TGATGTTGTTTGCTTGTATT+TGG | + | chr3.2:59600488-59600507 | MS.gene049717:intron | 30.0% |
| ! | TTCAACCATAGTATTTTGTG+TGG | + | chr3.2:59602209-59602228 | MS.gene049717:intron | 30.0% |
| !! | GACAAAGAGTATTTGAAACT+AGG | - | chr3.2:59600624-59600643 | None:intergenic | 30.0% |
| !! | GTTAATCTGTTAGCTTGTTT+CGG | + | chr3.2:59600647-59600666 | MS.gene049717:intron | 30.0% |
| !!! | ACTTGAGGCTTTTTTTTCAA+AGG | - | chr3.2:59601406-59601425 | None:intergenic | 30.0% |
| !!! | CGATGTAAATCGCTTTTTAA+TGG | + | chr3.2:59600899-59600918 | MS.gene049717:intron | 30.0% |
| AAACAGAGAAACTTCTCGAT+GGG | + | chr3.2:59602062-59602081 | MS.gene049717:CDS | 35.0% | |
| ACAACAAGTACATAGTGGTA+CGG | + | chr3.2:59602089-59602108 | MS.gene049717:intron | 35.0% | |
| ACCAACTATCAAACGAAGAA+AGG | + | chr3.2:59601723-59601742 | MS.gene049717:CDS | 35.0% | |
| ACTACAAGCTTTCTGAATTC+CGG | + | chr3.2:59599726-59599745 | MS.gene049717:intron | 35.0% | |
| AGATGGGATGTACAATACAA+AGG | + | chr3.2:59599180-59599199 | MS.gene049717:CDS | 35.0% | |
| AGGATTTGAATACGTTGGTA+TGG | + | chr3.2:59600174-59600193 | MS.gene049717:intron | 35.0% | |
| AGTTCATTCCTTCTCCAATT+AGG | + | chr3.2:59601586-59601605 | MS.gene049717:intron | 35.0% | |
| ATATGGAGAGAAAGCAATCA+AGG | + | chr3.2:59600514-59600533 | MS.gene049717:intron | 35.0% | |
| ATATTGCACATTGCCCTAAT+TGG | - | chr3.2:59601603-59601622 | None:intergenic | 35.0% | |
| ATTCTGTCCTGTACCAATTT+GGG | - | chr3.2:59600744-59600763 | None:intergenic | 35.0% | |
| CAATGGAGCTGAAGATTTAA+AGG | + | chr3.2:59602514-59602533 | MS.gene049717:CDS | 35.0% | |
| CACACACCCTGTATTTATAA+TGG | - | chr3.2:59599561-59599580 | None:intergenic | 35.0% | |
| CATAAGCTACCTGATATCAA+TGG | + | chr3.2:59602497-59602516 | MS.gene049717:CDS | 35.0% | |
| CCAACTATCAAACGAAGAAA+GGG | + | chr3.2:59601724-59601743 | MS.gene049717:CDS | 35.0% | |
| CCGTGCAAAATCTTTATTAG+TGG | + | chr3.2:59600543-59600562 | MS.gene049717:intron | 35.0% | |
| CGGTATGATCTATTTATCTG+TGG | + | chr3.2:59602109-59602128 | MS.gene049717:intron | 35.0% | |
| CTCAATGATATCATAGATGG+GGG | + | chr3.2:59600996-59601015 | MS.gene049717:intron | 35.0% | |
| GAGATAAGGGATTTAAGCTT+TGG | - | chr3.2:59602548-59602567 | None:intergenic | 35.0% | |
| GATGGGATGTACAATACAAA+GGG | + | chr3.2:59599181-59599200 | MS.gene049717:CDS | 35.0% | |
| GGGTGTTTATAATGCAAGAA+AGG | + | chr3.2:59600969-59600988 | MS.gene049717:intron | 35.0% | |
| GGTGTCTGCAATTTATTGAA+AGG | + | chr3.2:59599248-59599267 | MS.gene049717:CDS | 35.0% | |
| GTAACGTTCTTAGATTTCCA+AGG | + | chr3.2:59600786-59600805 | MS.gene049717:intron | 35.0% | |
| GTCTGCAATTTATTGAAAGG+TGG | + | chr3.2:59599251-59599270 | MS.gene049717:intron | 35.0% | |
| GTTCATTCCTTCTCCAATTA+GGG | + | chr3.2:59601587-59601606 | MS.gene049717:intron | 35.0% | |
| TAACCAAGTGATCATAGGAA+AGG | + | chr3.2:59600277-59600296 | MS.gene049717:intron | 35.0% | |
| TACGTTGGTATGGCATAATT+TGG | + | chr3.2:59600184-59600203 | MS.gene049717:intron | 35.0% | |
| TGAACAATATCTTTGTCAGG+TGG | + | chr3.2:59601661-59601680 | MS.gene049717:intron | 35.0% | |
| TGTGAAGGATTTGAATACGT+TGG | + | chr3.2:59600169-59600188 | MS.gene049717:intron | 35.0% | |
| TGTGGAAGGAAGATAAAGTA+GGG | + | chr3.2:59600093-59600112 | MS.gene049717:intron | 35.0% | |
| TTAGCGAAAATTCAGTAGAG+TGG | + | chr3.2:59600070-59600089 | MS.gene049717:intron | 35.0% | |
| TTATGGGTAGAAAGAAAGTG+GGG | + | chr3.2:59599966-59599985 | MS.gene049717:intron | 35.0% | |
| TTGATTGCTTTCTCTCCATA+TGG | - | chr3.2:59600515-59600534 | None:intergenic | 35.0% | |
| TTGCTTGTATTTGGTCCATA+TGG | + | chr3.2:59600497-59600516 | MS.gene049717:intron | 35.0% | |
| TTGGTTAGCAAAGTTCACTT+TGG | - | chr3.2:59600264-59600283 | None:intergenic | 35.0% | |
| TTTGCTAACCAAGTGATCAT+AGG | + | chr3.2:59600272-59600291 | MS.gene049717:intron | 35.0% | |
| ! | AGCCTATCTTTTGTTAAGGA+AGG | + | chr3.2:59600133-59600152 | MS.gene049717:intron | 35.0% |
| ! | AGTCAGCCTATCTTTTGTTA+AGG | + | chr3.2:59600129-59600148 | MS.gene049717:intron | 35.0% |
| ! | GGTTGCTTCTCTTTTATGTT+GGG | + | chr3.2:59600944-59600963 | MS.gene049717:intron | 35.0% |
| ! | TGGTTGCTTCTCTTTTATGT+TGG | + | chr3.2:59600943-59600962 | MS.gene049717:intron | 35.0% |
| ! | TTTATCTCGATTTGCATGCA+AGG | - | chr3.2:59602316-59602335 | None:intergenic | 35.0% |
| !! | TTGTGCAGTTTTGTGTTCAA+TGG | + | chr3.2:59601020-59601039 | MS.gene049717:intron | 35.0% |
| !!! | AATCGCTTTTTAATGGGATG+TGG | + | chr3.2:59600906-59600925 | MS.gene049717:intron | 35.0% |
| !!! | ATTTTCGAGTTCCTAACTGT+TGG | + | chr3.2:59600571-59600590 | MS.gene049717:intron | 35.0% |
| !!! | TTTTCGAGTTCCTAACTGTT+GGG | + | chr3.2:59600572-59600591 | MS.gene049717:intron | 35.0% |
| AAGAACTGAGGTTAGAGAAG+TGG | + | chr3.2:59601093-59601112 | MS.gene049717:intron | 40.0% | |
| AGCCAGAGTTATGATAAGCT+TGG | + | chr3.2:59601807-59601826 | MS.gene049717:intron | 40.0% | |
| ATGTTACAGTCTTACGTTGG+TGG | + | chr3.2:59601127-59601146 | MS.gene049717:intron | 40.0% | |
| ATTCCTGGTGGAACAATTCT+TGG | + | chr3.2:59599438-59599457 | MS.gene049717:intron | 40.0% | |
| CAAACTCTGGATCAACATCA+TGG | + | chr3.2:59601535-59601554 | MS.gene049717:CDS | 40.0% | |
| CAAGGATCCTATAGTAGAGT+TGG | + | chr3.2:59600040-59600059 | MS.gene049717:intron | 40.0% | |
| CAATACAAAGGGATCTAGCT+AGG | + | chr3.2:59599192-59599211 | MS.gene049717:CDS | 40.0% | |
| CATCCTTTCCTATGATCACT+TGG | - | chr3.2:59600283-59600302 | None:intergenic | 40.0% | |
| CCACTCCACACAAAATACTA+TGG | - | chr3.2:59602217-59602236 | None:intergenic | 40.0% | |
| CGCCTTCCTTAACAAAAGAT+AGG | - | chr3.2:59600138-59600157 | None:intergenic | 40.0% | |
| CTCTGCATAATTATGCAGCA+CGG | + | chr3.2:59601167-59601186 | MS.gene049717:intron | 40.0% | |
| GAAAATTCAGTAGAGTGGTG+TGG | + | chr3.2:59600075-59600094 | MS.gene049717:intron | 40.0% | |
| GAAACAGAGAAACTTCTCGA+TGG | + | chr3.2:59602061-59602080 | MS.gene049717:CDS | 40.0% | |
| GATTCTGTCCTGTACCAATT+TGG | - | chr3.2:59600745-59600764 | None:intergenic | 40.0% | |
| GATTGTCTTGTGAAGAACTG+AGG | + | chr3.2:59601081-59601100 | MS.gene049717:intron | 40.0% | |
| GTCTGACAACAAGTACATAG+TGG | + | chr3.2:59602084-59602103 | MS.gene049717:CDS | 40.0% | |
| GTGGTAGAGTTATACGTTGA+CGG | + | chr3.2:59602363-59602382 | MS.gene049717:intron | 40.0% | |
| GTGTGGAAGGAAGATAAAGT+AGG | + | chr3.2:59600092-59600111 | MS.gene049717:intron | 40.0% | |
| TATGGGTAGAAAGAAAGTGG+GGG | + | chr3.2:59599967-59599986 | MS.gene049717:intron | 40.0% | |
| TCCTATAGTAGAGTTGGATG+AGG | + | chr3.2:59600046-59600065 | MS.gene049717:intron | 40.0% | |
| TCTTCAGCTCCATTGATATC+AGG | - | chr3.2:59602509-59602528 | None:intergenic | 40.0% | |
| TGCCAAGCTTATCATAACTC+TGG | - | chr3.2:59601812-59601831 | None:intergenic | 40.0% | |
| ! | CAAAAGCTGCTAGCTTCAAT+GGG | - | chr3.2:59600211-59600230 | None:intergenic | 40.0% |
| ! | CCATAGTATTTTGTGTGGAG+TGG | + | chr3.2:59602214-59602233 | MS.gene049717:intron | 40.0% |
| ! | CCCTTTCTTCGTTTGATAGT+TGG | - | chr3.2:59601727-59601746 | None:intergenic | 40.0% |
| ! | CTTCTCTTTTATGTTGGGTG+GGG | + | chr3.2:59600949-59600968 | MS.gene049717:intron | 40.0% |
| ! | GCTTCTCTTTTATGTTGGGT+GGG | + | chr3.2:59600948-59600967 | MS.gene049717:intron | 40.0% |
| ! | GTGACCCTTTTAACACCTAT+AGG | - | chr3.2:59601635-59601654 | None:intergenic | 40.0% |
| ! | TACGTTGACGGACAACTTAA+TGG | + | chr3.2:59602375-59602394 | MS.gene049717:intron | 40.0% |
| ! | TGATGGGTGTTTCACAAAGA+GGG | + | chr3.2:59600398-59600417 | MS.gene049717:intron | 40.0% |
| ! | TGCTTCTCTTTTATGTTGGG+TGG | + | chr3.2:59600947-59600966 | MS.gene049717:intron | 40.0% |
| ! | TGTATCGGTGAATGTGCATA+TGG | + | chr3.2:59600311-59600330 | MS.gene049717:intron | 40.0% |
| ! | TTGATGGGTGTTTCACAAAG+AGG | + | chr3.2:59600397-59600416 | MS.gene049717:intron | 40.0% |
| ! | TTTTTAATGGGATGTGGAGG+TGG | + | chr3.2:59600912-59600931 | MS.gene049717:intron | 40.0% |
| !! | ATGGACCTTGGTGTGAATTT+TGG | + | chr3.2:59601043-59601062 | MS.gene049717:intron | 40.0% |
| !! | GCAGTTTTGTGTTCAATGGA+TGG | + | chr3.2:59601024-59601043 | MS.gene049717:intron | 40.0% |
| !! | GTGAATTTTGGCAGCTTGTT+TGG | + | chr3.2:59601055-59601074 | MS.gene049717:intron | 40.0% |
| !! | TGTTAGCTTGTTTCGGACTT+GGG | + | chr3.2:59600654-59600673 | MS.gene049717:intron | 40.0% |
| !!! | TTTTAGTTTTGCAGGCCACT+TGG | + | chr3.2:59600867-59600886 | MS.gene049717:intron | 40.0% |
| AACTGAGGTTAGAGAAGTGG+TGG | + | chr3.2:59601096-59601115 | MS.gene049717:intron | 45.0% | |
| AGAGAAGGGAAGCAGTATGT+TGG | + | chr3.2:59600821-59600840 | MS.gene049717:intron | 45.0% | |
| AGCTGCCAAAATTCACACCA+AGG | - | chr3.2:59601051-59601070 | None:intergenic | 45.0% | |
| ATTCAGTAGAGTGGTGTGGA+AGG | + | chr3.2:59600079-59600098 | MS.gene049717:intron | 45.0% | |
| CACATTGCCCTAATTGGAGA+AGG | - | chr3.2:59601597-59601616 | None:intergenic | 45.0% | |
| CACGAATGCAACTTCAATGC+AGG | - | chr3.2:59601195-59601214 | None:intergenic | 45.0% | |
| CAGGGTGTGTGATCTCATTA+TGG | + | chr3.2:59599570-59599589 | MS.gene049717:intron | 45.0% | |
| CATCATGGTTACTGTGTAGC+AGG | + | chr3.2:59601550-59601569 | MS.gene049717:CDS | 45.0% | |
| CATTTCCAAGCCCAACAGTT+AGG | - | chr3.2:59600585-59600604 | None:intergenic | 45.0% | |
| CTAAACTAGCCCACCCAAAT+TGG | + | chr3.2:59600728-59600747 | MS.gene049717:intron | 45.0% | |
| CTAACTGTTGGGCTTGGAAA+TGG | + | chr3.2:59600583-59600602 | MS.gene049717:intron | 45.0% | |
| CTTAAACGAAGCAAGGACGA+TGG | + | chr3.2:59601686-59601705 | MS.gene049717:CDS | 45.0% | |
| GACAGAGACAATGCAAACTC+TGG | + | chr3.2:59601522-59601541 | MS.gene049717:intron | 45.0% | |
| GCAATTGAAGAGATCCACTC+TGG | - | chr3.2:59602290-59602309 | None:intergenic | 45.0% | |
| GCCTCATCCAACTCTACTAT+AGG | - | chr3.2:59600050-59600069 | None:intergenic | 45.0% | |
| GCTAATACATCCTCTCGAGA+AGG | + | chr3.2:59599227-59599246 | MS.gene049717:CDS | 45.0% | |
| GCTTGGCAATGAAAACTCCA+CGG | + | chr3.2:59601824-59601843 | MS.gene049717:intron | 45.0% | |
| GGTGGATCTTAAACGAAGCA+AGG | + | chr3.2:59601679-59601698 | MS.gene049717:intron | 45.0% | |
| GTTACAATCAAGACTGCAGC+AGG | - | chr3.2:59600771-59600790 | None:intergenic | 45.0% | |
| GTTGGAATGTTGGGTGAGAT+GGG | + | chr3.2:59599164-59599183 | MS.gene049717:CDS | 45.0% | |
| TGACCAAGAATTGTTCCACC+AGG | - | chr3.2:59599444-59599463 | None:intergenic | 45.0% | |
| TGGAAACGTGTGACTAGAGA+GGG | + | chr3.2:59601243-59601262 | MS.gene049717:intron | 45.0% | |
| TGGTGGAACAATTCTTGGTC+AGG | + | chr3.2:59599443-59599462 | MS.gene049717:intron | 45.0% | |
| TGTCCTGTACCAATTTGGGT+GGG | - | chr3.2:59600740-59600759 | None:intergenic | 45.0% | |
| TGTGTTCAATGGATGGACCT+TGG | + | chr3.2:59601031-59601050 | MS.gene049717:intron | 45.0% | |
| TGTTAAGGAAGGCGACTTGT+AGG | + | chr3.2:59600144-59600163 | MS.gene049717:intron | 45.0% | |
| TTGAAGAGATCCACTCTGGT+CGG | - | chr3.2:59602286-59602305 | None:intergenic | 45.0% | |
| TTGGTCAGGCTTTACTTAGC+CGG | + | chr3.2:59599457-59599476 | MS.gene049717:intron | 45.0% | |
| ! | ACATCGATTGAACTGCCAAG+TGG | - | chr3.2:59600885-59600904 | None:intergenic | 45.0% |
| ! | GAACAGTTTTCTTGCAGCTG+GGG | + | chr3.2:59600843-59600862 | MS.gene049717:intron | 45.0% |
| ! | GCAAAAGCTGCTAGCTTCAA+TGG | - | chr3.2:59600212-59600231 | None:intergenic | 45.0% |
| ! | GGAACAGTTTTCTTGCAGCT+GGG | + | chr3.2:59600842-59600861 | MS.gene049717:intron | 45.0% |
| ! | GGAGGAGAAAGCTGTTTCAA+TGG | + | chr3.2:59600003-59600022 | MS.gene049717:intron | 45.0% |
| ! | TGAAGCTAGCAGCTTTTGCT+AGG | + | chr3.2:59600213-59600232 | MS.gene049717:intron | 45.0% |
| ! | TGGAACAGTTTTCTTGCAGC+TGG | + | chr3.2:59600841-59600860 | MS.gene049717:intron | 45.0% |
| !! | CGCTTTTTAATGGGATGTGG+AGG | + | chr3.2:59600909-59600928 | MS.gene049717:intron | 45.0% |
| !! | CTGTTAGCTTGTTTCGGACT+TGG | + | chr3.2:59600653-59600672 | MS.gene049717:intron | 45.0% |
| !! | GGGTCTAGCTTAGTTTGCAT+CGG | + | chr3.2:59600677-59600696 | MS.gene049717:intron | 45.0% |
| !! | GTTAGCTTGTTTCGGACTTG+GGG | + | chr3.2:59600655-59600674 | MS.gene049717:intron | 45.0% |
| !! | TTAGCTTGTTTCGGACTTGG+GGG | + | chr3.2:59600656-59600675 | MS.gene049717:intron | 45.0% |
| !!! | CTTACGTTGGTGGCTTGTTT+TGG | + | chr3.2:59601137-59601156 | MS.gene049717:intron | 45.0% |
| AGATCCACTCTGGTCGGATA+CGG | - | chr3.2:59602280-59602299 | None:intergenic | 50.0% | |
| AGTTGCATTCGTGCCGTGTT+AGG | + | chr3.2:59601202-59601221 | MS.gene049717:intron | 50.0% | |
| ATTGCAGACACCTTCTCGAG+AGG | - | chr3.2:59599240-59599259 | None:intergenic | 50.0% | |
| CTCCCATGCACATCCTAACA+CGG | - | chr3.2:59601218-59601237 | None:intergenic | 50.0% | |
| CTGTCCTGTACCAATTTGGG+TGG | - | chr3.2:59600741-59600760 | None:intergenic | 50.0% | |
| GAGTTCCTAACTGTTGGGCT+TGG | + | chr3.2:59600577-59600596 | MS.gene049717:intron | 50.0% | |
| GTGGAAACGTGTGACTAGAG+AGG | + | chr3.2:59601242-59601261 | MS.gene049717:intron | 50.0% | |
| TAGCCCACCCAAATTGGTAC+AGG | + | chr3.2:59600734-59600753 | MS.gene049717:intron | 50.0% | |
| TGCCGTGTTAGGATGTGCAT+GGG | + | chr3.2:59601213-59601232 | MS.gene049717:intron | 50.0% | |
| TGGGTGTTTCACAAAGAGGG+AGG | + | chr3.2:59600401-59600420 | MS.gene049717:intron | 50.0% | |
| TGGTCAGGCTTTACTTAGCC+GGG | + | chr3.2:59599458-59599477 | MS.gene049717:intron | 50.0% | |
| TGTGTCTCAGGCGTGATTCA+GGG | + | chr3.2:59600436-59600455 | MS.gene049717:intron | 50.0% | |
| TTGTGTCTCAGGCGTGATTC+AGG | + | chr3.2:59600435-59600454 | MS.gene049717:intron | 50.0% | |
| ! | AGCTAGCAGCTTTTGCTAGG+TGG | + | chr3.2:59600216-59600235 | MS.gene049717:intron | 50.0% |
| ! | GATTTCCAAGGGCTCGCTTT+TGG | + | chr3.2:59600798-59600817 | MS.gene049717:intron | 50.0% |
| !! | TAGCTTGTTTCGGACTTGGG+GGG | + | chr3.2:59600657-59600676 | MS.gene049717:intron | 50.0% |
| !!! | GCTGGGGCTTTTAGTTTTGC+AGG | + | chr3.2:59600859-59600878 | MS.gene049717:intron | 50.0% |
| ATGTGGAGGTGGTAGAAGGC+TGG | + | chr3.2:59600923-59600942 | MS.gene049717:intron | 55.0% | |
| CGTGTTAGGATGTGCATGGG+AGG | + | chr3.2:59601216-59601235 | MS.gene049717:intron | 55.0% | |
| GAAAGTGGGGGTGGTAGTTG+AGG | + | chr3.2:59599979-59599998 | MS.gene049717:intron | 55.0% | |
| GGATGTGCATGGGAGGAATG+TGG | + | chr3.2:59601223-59601242 | MS.gene049717:intron | 55.0% | |
| GGCGACTTGTAGGTCTGTGA+AGG | + | chr3.2:59600154-59600173 | MS.gene049717:intron | 55.0% | |
| GGGTAGAAAGAAAGTGGGGG+TGG | + | chr3.2:59599970-59599989 | MS.gene049717:intron | 55.0% | |
| GTGCCGTGTTAGGATGTGCA+TGG | + | chr3.2:59601212-59601231 | MS.gene049717:intron | 55.0% | |
| TCTCAGGCGTGATTCAGGGT+GGG | + | chr3.2:59600440-59600459 | MS.gene049717:intron | 55.0% | |
| TCTCTCCAAAAGCGAGCCCT+TGG | - | chr3.2:59600806-59600825 | None:intergenic | 55.0% | |
| TGGGATGTGGAGGTGGTAGA+AGG | + | chr3.2:59600919-59600938 | MS.gene049717:intron | 55.0% | |
| !! | AGGGCTCGCTTTTGGAGAGA+AGG | + | chr3.2:59600806-59600825 | MS.gene049717:intron | 55.0% |
| !! | GGGCTCGCTTTTGGAGAGAA+GGG | + | chr3.2:59600807-59600826 | MS.gene049717:intron | 55.0% |
| AGTGGGGGTGGTAGTTGAGG+TGG | + | chr3.2:59599982-59600001 | MS.gene049717:intron | 60.0% | |
| CTCACCGTATCCGACCAGAG+TGG | + | chr3.2:59602273-59602292 | MS.gene049717:intron | 60.0% | |
| GTCTCAGGCGTGATTCAGGG+TGG | + | chr3.2:59600439-59600458 | MS.gene049717:intron | 60.0% | |
| GGGGGTGGTAGTTGAGGTGG+AGG | + | chr3.2:59599985-59600004 | MS.gene049717:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 59599164 | 59602582 | 59599164 | ID=MS.gene049717 |
| chr3.2 | mRNA | 59599164 | 59602582 | 59599164 | ID=MS.gene049717.t1;Parent=MS.gene049717 |
| chr3.2 | exon | 59599164 | 59599269 | 59599164 | ID=MS.gene049717.t1.exon1;Parent=MS.gene049717.t1 |
| chr3.2 | CDS | 59599164 | 59599269 | 59599164 | ID=cds.MS.gene049717.t1;Parent=MS.gene049717.t1 |
| chr3.2 | exon | 59601527 | 59601582 | 59601527 | ID=MS.gene049717.t1.exon2;Parent=MS.gene049717.t1 |
| chr3.2 | CDS | 59601527 | 59601582 | 59601527 | ID=cds.MS.gene049717.t1;Parent=MS.gene049717.t1 |
| chr3.2 | exon | 59601680 | 59601813 | 59601680 | ID=MS.gene049717.t1.exon3;Parent=MS.gene049717.t1 |
| chr3.2 | CDS | 59601680 | 59601813 | 59601680 | ID=cds.MS.gene049717.t1;Parent=MS.gene049717.t1 |
| chr3.2 | exon | 59602048 | 59602105 | 59602048 | ID=MS.gene049717.t1.exon4;Parent=MS.gene049717.t1 |
| chr3.2 | CDS | 59602048 | 59602105 | 59602048 | ID=cds.MS.gene049717.t1;Parent=MS.gene049717.t1 |
| chr3.2 | exon | 59602467 | 59602582 | 59602467 | ID=MS.gene049717.t1.exon5;Parent=MS.gene049717.t1 |
| chr3.2 | CDS | 59602467 | 59602582 | 59602467 | ID=cds.MS.gene049717.t1;Parent=MS.gene049717.t1 |
| Gene Sequence |
| Protein sequence |
