Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049888.t1 | AES98340.1 | 92.3 | 548 | 40 | 1 | 1 | 548 | 43 | 588 | 5.40E-278 | 966.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049888.t1 | O81832 | 41.5 | 550 | 284 | 6 | 1 | 548 | 38 | 551 | 1.9e-122 | 441.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049888.t1 | G7K610 | 92.3 | 548 | 40 | 1 | 1 | 548 | 43 | 588 | 3.9e-278 | 966.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049888 | MS.gene049889 | 0.928408 | 3.01E-92 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 118 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTCCATATCATGCTTTC+TGG | 0.134771 | 5.3:-53633819 | None:intergenic |
| TTCCATTGCTGTGGTGATTT+TGG | 0.165436 | 5.3:-53634176 | None:intergenic |
| CGAAATCTTGTTAAGGTTCT+TGG | 0.194051 | 5.3:+53635478 | MS.gene049888:CDS |
| GTGGACAGAGATTCGAATTT+TGG | 0.197977 | 5.3:+53634494 | MS.gene049888:CDS |
| CAAGGCGTTGACGAATTAAT+AGG | 0.228972 | 5.3:-53634013 | None:intergenic |
| ATTGCAGTCAAAAGACTTTC+AGG | 0.237357 | 5.3:+53635391 | MS.gene049888:CDS |
| GTTTGGATATAATCGAAAAT+TGG | 0.245319 | 5.3:+53633710 | MS.gene049888:CDS |
| TTGGTAAACACTCCATATTT+TGG | 0.252901 | 5.3:-53634051 | None:intergenic |
| AAGCTTGGTGAAGGTGGTTT+TGG | 0.255275 | 5.3:+53635231 | MS.gene049888:CDS |
| TTAGAACTTTACCTTGTATA+CGG | 0.255716 | 5.3:-53635256 | None:intergenic |
| ATATTCAAACCAAAGCTTAA+AGG | 0.270097 | 5.3:+53634692 | MS.gene049888:CDS |
| CAACCACTGACTTCTCCTTT+TGG | 0.288094 | 5.3:-53634398 | None:intergenic |
| AAGTCAGTGGTTGTTCTCTT+TGG | 0.295566 | 5.3:+53634408 | MS.gene049888:CDS |
| TGATCTAGCTACAATAATTA+AGG | 0.306345 | 5.3:+53635182 | MS.gene049888:CDS |
| TACCGGATACTACAAATTCT+TGG | 0.312517 | 5.3:+53634294 | MS.gene049888:CDS |
| ATGTTCCTGAATCCAAAATA+TGG | 0.332861 | 5.3:+53634039 | MS.gene049888:CDS |
| CCCCGTTCGAAGAGTGGTTT+GGG | 0.349687 | 5.3:+53633428 | MS.gene049888:CDS |
| CAAACCGCTATGTAGGAATA+TGG | 0.351595 | 5.3:+53633394 | MS.gene049888:CDS |
| ATGGGTTTCAGAAATTTGTT+AGG | 0.369650 | 5.3:+53634264 | MS.gene049888:CDS |
| GCAATCCAGAAAGCATGATA+TGG | 0.371561 | 5.3:+53633814 | MS.gene049888:CDS |
| AGAATCTTACCTTTAAGCTT+TGG | 0.374457 | 5.3:-53634701 | None:intergenic |
| CTATTACCTGGAATGACGTT+TGG | 0.376224 | 5.3:+53633693 | MS.gene049888:CDS |
| ACATGGGCGTGGGAAGAAAT+TGG | 0.391875 | 5.3:+53634604 | MS.gene049888:CDS |
| AATGCACAATGCACGATTGA+TGG | 0.394263 | 5.3:+53634119 | MS.gene049888:CDS |
| ACCTTCACCAAGCTTATTGT+TGG | 0.395608 | 5.3:-53635223 | None:intergenic |
| TGGCAGCACTTTGGTCTCTA+AGG | 0.395703 | 5.3:+53633329 | None:intergenic |
| AAGGCGTTGACGAATTAATA+GGG | 0.398141 | 5.3:-53634012 | None:intergenic |
| TTATAATCATAAAGCGGGTT+AGG | 0.398523 | 5.3:-53633906 | None:intergenic |
| GTTCTTGGTTGTTGCATTGA+AGG | 0.405020 | 5.3:+53635493 | MS.gene049888:CDS |
| AATGAAGACGATCCATCTTC+GGG | 0.406803 | 5.3:+53633762 | MS.gene049888:CDS |
| ATTTGTTAGGATGAAGTTAC+CGG | 0.409749 | 5.3:+53634277 | MS.gene049888:CDS |
| TGTGAATATTACAATGTTTG+TGG | 0.414836 | 5.3:+53634092 | MS.gene049888:CDS |
| ACCCAAACCACTCTTCGAAC+GGG | 0.415456 | 5.3:-53633429 | None:intergenic |
| ATCCAAGAATTTGTAGTATC+CGG | 0.416938 | 5.3:-53634296 | None:intergenic |
| ATTGTTGGTTGAGAAGTTAT+CGG | 0.420829 | 5.3:-53635208 | None:intergenic |
| TTGTTCAAGAGCTGCACAAC+AGG | 0.421106 | 5.3:-53633588 | None:intergenic |
| TCCCCGTTCGAAGAGTGGTT+TGG | 0.421986 | 5.3:+53633427 | MS.gene049888:CDS |
| GATGTGTGCGTGGTGGAAAT+TGG | 0.422312 | 5.3:+53634219 | MS.gene049888:CDS |
| GCAACATCGAAATCTTGTTA+AGG | 0.424766 | 5.3:+53635471 | MS.gene049888:CDS |
| GAATGAAGACGATCCATCTT+CGG | 0.425318 | 5.3:+53633761 | MS.gene049888:CDS |
| AATGTTGCTTGTGATGCTAT+TGG | 0.426560 | 5.3:+53634652 | MS.gene049888:CDS |
| AAGTATCCGATGGCATGATT+TGG | 0.429164 | 5.3:-53634070 | None:intergenic |
| TTATATCCAAACGTCATTCC+AGG | 0.439646 | 5.3:-53633699 | None:intergenic |
| GTTGACGAATTAATAGGGTT+TGG | 0.444857 | 5.3:-53634007 | None:intergenic |
| GTGGTGGAAATTGGAGTTGC+GGG | 0.453759 | 5.3:+53634228 | MS.gene049888:CDS |
| CCTCTCTCTAGTGGAGTTGT+CGG | 0.468503 | 5.3:+53633876 | MS.gene049888:CDS |
| ACCACAATGACTCTCTTGTC+TGG | 0.472477 | 5.3:+53633529 | MS.gene049888:CDS |
| TAGCGGTTTGAGGACTTACC+AGG | 0.480811 | 5.3:-53633381 | None:intergenic |
| TATTCCTACATAGCGGTTTG+AGG | 0.485993 | 5.3:-53633391 | None:intergenic |
| TCGACTAAAATCTGTAGGTC+AGG | 0.487209 | 5.3:+53633843 | MS.gene049888:CDS |
| GCATATAAATCTCCCGAAGA+TGG | 0.490496 | 5.3:-53633774 | None:intergenic |
| CCTTGTGATACACTATTACC+TGG | 0.495929 | 5.3:+53633681 | MS.gene049888:CDS |
| ATTTCCTGATGGCAGCACTT+TGG | 0.496809 | 5.3:+53633320 | None:intergenic |
| CCAATGTGTCAATGTTTACC+TGG | 0.497816 | 5.3:+53634146 | MS.gene049888:CDS |
| AACAATAAGCTTGGTGAAGG+TGG | 0.505810 | 5.3:+53635225 | MS.gene049888:CDS |
| TTCTCAACCAACAATAAGCT+TGG | 0.512752 | 5.3:+53635216 | MS.gene049888:CDS |
| TTTATTGGAATCTCACTGCT+TGG | 0.513814 | 5.3:+53633736 | MS.gene049888:CDS |
| CAACTTTATAATCATAAAGC+GGG | 0.515308 | 5.3:-53633911 | None:intergenic |
| AAGGATGGAACCTTTGAGAT+GGG | 0.516044 | 5.3:+53633348 | MS.gene049888:CDS |
| CAAATTTCTGAAACCCATCT+CGG | 0.523036 | 5.3:-53634259 | None:intergenic |
| GTGAATATAGGTCATATACA+TGG | 0.529029 | 5.3:+53634587 | MS.gene049888:intron |
| GAGATGGGTTTCTTCAAACC+TGG | 0.529447 | 5.3:+53633363 | MS.gene049888:CDS |
| TAGAACTTTACCTTGTATAC+GGG | 0.530154 | 5.3:-53635255 | None:intergenic |
| AGCAATGGAATTCAATGGAC+TGG | 0.533380 | 5.3:+53634189 | MS.gene049888:CDS |
| CTTTCAGGAAATTCTGAGCA+AGG | 0.539383 | 5.3:+53635406 | MS.gene049888:CDS |
| AAGTCCTCAAACCGCTATGT+AGG | 0.540034 | 5.3:+53633387 | MS.gene049888:CDS |
| AGCCAAAATCACCACAGCAA+TGG | 0.541547 | 5.3:+53634174 | MS.gene049888:CDS |
| CCATGGAATCCTCTCTCTAG+TGG | 0.542585 | 5.3:+53633867 | MS.gene049888:CDS |
| TTTAGTTCTCAGAGATGAGA+AGG | 0.543173 | 5.3:+53633617 | MS.gene049888:CDS |
| GTTGTGCAGCTCTTGAACAA+TGG | 0.543567 | 5.3:+53633591 | MS.gene049888:CDS |
| TAAGGATGGAACCTTTGAGA+TGG | 0.543733 | 5.3:+53633347 | MS.gene049888:CDS |
| TTGGTTGAGTACCGCTATAG+AGG | 0.544978 | 5.3:-53633988 | None:intergenic |
| ACCACAGCAATGGAATTCAA+TGG | 0.548148 | 5.3:+53634184 | MS.gene049888:CDS |
| AACCCAAACCACTCTTCGAA+CGG | 0.550904 | 5.3:-53633430 | None:intergenic |
| ATTGTAGCTAGATCAAAGAA+AGG | 0.551323 | 5.3:-53635174 | None:intergenic |
| AAATATCCCCGTTCGAAGAG+TGG | 0.552556 | 5.3:+53633422 | MS.gene049888:CDS |
| TATACCTATCTAGACCCAAA+AGG | 0.561078 | 5.3:+53634383 | MS.gene049888:CDS |
| ATAGGTCATATACATGGGCG+TGG | 0.567576 | 5.3:+53634593 | MS.gene049888:intron |
| AAGCAACATTGAAACTGTGA+TGG | 0.571301 | 5.3:-53634639 | None:intergenic |
| TCCAGAAAGCATGATATGGA+AGG | 0.579994 | 5.3:+53633818 | MS.gene049888:CDS |
| CGTGGTGGAAATTGGAGTTG+CGG | 0.581085 | 5.3:+53634227 | MS.gene049888:CDS |
| TTTGAAGAAACCCATCTCAA+AGG | 0.583331 | 5.3:-53633358 | None:intergenic |
| TGGTTTGAATATATAAACGT+AGG | 0.583668 | 5.3:-53634681 | None:intergenic |
| CATTGTGGTTGAGAAGCACA+AGG | 0.585143 | 5.3:-53633515 | None:intergenic |
| ACCAACAATAAGCTTGGTGA+AGG | 0.594564 | 5.3:+53635222 | MS.gene049888:CDS |
| GTAATAGTGTATCACAAGGA+TGG | 0.598679 | 5.3:-53633677 | None:intergenic |
| AGACTTTCGCAAAGTAGCGA+AGG | 0.605631 | 5.3:+53634452 | MS.gene049888:CDS |
| AGCACTTTGGTCTCTAAGGA+TGG | 0.606658 | 5.3:+53633333 | None:intergenic |
| AGGGCTCGACTAAAATCTGT+AGG | 0.607614 | 5.3:+53633838 | MS.gene049888:CDS |
| CCAGGTAAACATTGACACAT+TGG | 0.609816 | 5.3:-53634146 | None:intergenic |
| ACAACTTTATAATCATAAAG+CGG | 0.609832 | 5.3:-53633912 | None:intergenic |
| TGGATTCAGGAACATAAACA+AGG | 0.610855 | 5.3:-53634031 | None:intergenic |
| GGGAGATTTATATGCATCTG+TGG | 0.611413 | 5.3:+53633782 | MS.gene049888:CDS |
| TCCATTGAATTCCATTGCTG+TGG | 0.611616 | 5.3:-53634185 | None:intergenic |
| GAGTACCGCTATAGAGGTAA+CGG | 0.614560 | 5.3:-53633982 | None:intergenic |
| TGTTTACCAAATCATGCCAT+CGG | 0.616093 | 5.3:+53634064 | MS.gene049888:CDS |
| TGAATATAGGTCATATACAT+GGG | 0.618634 | 5.3:+53634588 | MS.gene049888:intron |
| CCAGGTAATAGTGTATCACA+AGG | 0.618710 | 5.3:-53633681 | None:intergenic |
| ATTCAGGCTACATTGCAAGA+TGG | 0.619588 | 5.3:+53635361 | MS.gene049888:intron |
| AATTCAATGGACTGGACACA+AGG | 0.619975 | 5.3:+53634197 | MS.gene049888:CDS |
| TAGGTCATATACATGGGCGT+GGG | 0.620084 | 5.3:+53634594 | MS.gene049888:intron |
| CCACTAGAGAGAGGATTCCA+TGG | 0.621585 | 5.3:-53633867 | None:intergenic |
| CCAGAAAGCATGATATGGAA+GGG | 0.622668 | 5.3:+53633819 | MS.gene049888:CDS |
| ACCAGACAAGAGAGTCATTG+TGG | 0.624097 | 5.3:-53633530 | None:intergenic |
| TAATATTCACAAGTATCCGA+TGG | 0.628521 | 5.3:-53634080 | None:intergenic |
| AAGTTGATCATAAGTCAAGA+TGG | 0.629200 | 5.3:+53633489 | MS.gene049888:CDS |
| CCCAAACCACTCTTCGAACG+GGG | 0.629536 | 5.3:-53633428 | None:intergenic |
| GTTGGTTGAGAAGTTATCGG+TGG | 0.632331 | 5.3:-53635205 | None:intergenic |
| CGATGATCTCTATATTCGAG+TGG | 0.648370 | 5.3:+53634475 | MS.gene049888:CDS |
| AAATCTGTAGGTCAGGACCA+TGG | 0.653015 | 5.3:+53633850 | MS.gene049888:CDS |
| TGGGAAGAAATTGGTCATGG+TGG | 0.662152 | 5.3:+53634613 | MS.gene049888:CDS |
| CCGACAACTCCACTAGAGAG+AGG | 0.670437 | 5.3:-53633876 | None:intergenic |
| GCGTGGGAAGAAATTGGTCA+TGG | 0.678054 | 5.3:+53634610 | MS.gene049888:CDS |
| TGTACCATATTCCTACATAG+CGG | 0.679922 | 5.3:-53633398 | None:intergenic |
| TAGTTCCGTTACCTCTATAG+CGG | 0.681845 | 5.3:+53633977 | MS.gene049888:CDS |
| TGGACACAAGGATGTGTGCG+TGG | 0.686780 | 5.3:+53634209 | MS.gene049888:CDS |
| GACCCAAAAGGAGAAGTCAG+TGG | 0.695084 | 5.3:+53634395 | MS.gene049888:CDS |
| ACACAAGGATGTGTGCGTGG+TGG | 0.721097 | 5.3:+53634212 | MS.gene049888:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAACTTTATAATCATAAAG+CGG | - | chr5.3:53633915-53633934 | None:intergenic | 20.0% |
| !! | ATATCAATACCTAATTTCTA+GGG | - | chr5.3:53635006-53635025 | None:intergenic | 20.0% |
| !! | TATATCAATACCTAATTTCT+AGG | - | chr5.3:53635007-53635026 | None:intergenic | 20.0% |
| !! | TCTTTGTTAATTGTGAATAT+AGG | + | chr5.3:53634575-53634594 | MS.gene049888:intron | 20.0% |
| !!! | ATCGAAAATTGGATTTTTAT+TGG | + | chr5.3:53633721-53633740 | MS.gene049888:CDS | 20.0% |
| ! | ATATTCAAACCAAAGCTTAA+AGG | + | chr5.3:53634692-53634711 | MS.gene049888:CDS | 25.0% |
| ! | CAACTTTATAATCATAAAGC+GGG | - | chr5.3:53633914-53633933 | None:intergenic | 25.0% |
| ! | GAATCATGTGAAAATATGAA+AGG | - | chr5.3:53634738-53634757 | None:intergenic | 25.0% |
| ! | GTTTGGATATAATCGAAAAT+TGG | + | chr5.3:53633710-53633729 | MS.gene049888:CDS | 25.0% |
| ! | TATGAACAACTCAAGAAATT+AGG | - | chr5.3:53634809-53634828 | None:intergenic | 25.0% |
| ! | TGAATATAGGTCATATACAT+GGG | + | chr5.3:53634588-53634607 | MS.gene049888:intron | 25.0% |
| ! | TGATCTAGCTACAATAATTA+AGG | + | chr5.3:53635182-53635201 | MS.gene049888:CDS | 25.0% |
| ! | TGGTTTGAATATATAAACGT+AGG | - | chr5.3:53634684-53634703 | None:intergenic | 25.0% |
| ! | TGTGAATATTACAATGTTTG+TGG | + | chr5.3:53634092-53634111 | MS.gene049888:CDS | 25.0% |
| ! | TTAGAACTTTACCTTGTATA+CGG | - | chr5.3:53635259-53635278 | None:intergenic | 25.0% |
| !! | ATATTTTCACCCTAGAAATT+AGG | + | chr5.3:53634994-53635013 | MS.gene049888:intron | 25.0% |
| !!! | ACAATGAAGAAAGTTTTTTG+TGG | + | chr5.3:53633643-53633662 | MS.gene049888:CDS | 25.0% |
| AAAGGGAAAAAAGAAAGAGA+TGG | + | chr5.3:53635126-53635145 | MS.gene049888:intron | 30.0% | |
| AATCCCATCTAATGAATCAA+AGG | + | chr5.3:53635108-53635127 | MS.gene049888:intron | 30.0% | |
| AGAATCTTACCTTTAAGCTT+TGG | - | chr5.3:53634704-53634723 | None:intergenic | 30.0% | |
| ATCCAAGAATTTGTAGTATC+CGG | - | chr5.3:53634299-53634318 | None:intergenic | 30.0% | |
| ATCCCATCTAATGAATCAAA+GGG | + | chr5.3:53635109-53635128 | MS.gene049888:intron | 30.0% | |
| ATGTTCCTGAATCCAAAATA+TGG | + | chr5.3:53634039-53634058 | MS.gene049888:CDS | 30.0% | |
| ATTGTAGCTAGATCAAAGAA+AGG | - | chr5.3:53635177-53635196 | None:intergenic | 30.0% | |
| CAGTTTCATGACTTGAAATT+TGG | - | chr5.3:53634786-53634805 | None:intergenic | 30.0% | |
| GTGAATATAGGTCATATACA+TGG | + | chr5.3:53634587-53634606 | MS.gene049888:intron | 30.0% | |
| TAATATTCACAAGTATCCGA+TGG | - | chr5.3:53634083-53634102 | None:intergenic | 30.0% | |
| TAGAACTTTACCTTGTATAC+GGG | - | chr5.3:53635258-53635277 | None:intergenic | 30.0% | |
| TTCCCTTTGATTCATTAGAT+GGG | - | chr5.3:53635114-53635133 | None:intergenic | 30.0% | |
| TTTCCCTTTGATTCATTAGA+TGG | - | chr5.3:53635115-53635134 | None:intergenic | 30.0% | |
| ! | AAGTTGATCATAAGTCAAGA+TGG | + | chr5.3:53633489-53633508 | MS.gene049888:CDS | 30.0% |
| ! | AATGAATCAAGGCTTTTGTT+TGG | - | chr5.3:53635550-53635569 | None:intergenic | 30.0% |
| ! | AGAACAATTTTGCAAGCATT+TGG | - | chr5.3:53634354-53634373 | None:intergenic | 30.0% |
| ! | ATGGGTTTCAGAAATTTGTT+AGG | + | chr5.3:53634264-53634283 | MS.gene049888:CDS | 30.0% |
| ! | ATTGTTGGTTGAGAAGTTAT+CGG | - | chr5.3:53635211-53635230 | None:intergenic | 30.0% |
| ! | ATTTGTTAGGATGAAGTTAC+CGG | + | chr5.3:53634277-53634296 | MS.gene049888:CDS | 30.0% |
| ! | TTATAATCATAAAGCGGGTT+AGG | - | chr5.3:53633909-53633928 | None:intergenic | 30.0% |
| ! | TTGGTAAACACTCCATATTT+TGG | - | chr5.3:53634054-53634073 | None:intergenic | 30.0% |
| !! | AGAGATTCGAATTTTGGTAA+GGG | + | chr5.3:53634500-53634519 | MS.gene049888:intron | 30.0% |
| !! | TATTCTCAACTCTGAAATTC+AGG | + | chr5.3:53635345-53635364 | MS.gene049888:intron | 30.0% |
| AAGCAACATTGAAACTGTGA+TGG | - | chr5.3:53634642-53634661 | None:intergenic | 35.0% | |
| ATTGCAGTCAAAAGACTTTC+AGG | + | chr5.3:53635391-53635410 | MS.gene049888:CDS | 35.0% | |
| CGAAATCTTGTTAAGGTTCT+TGG | + | chr5.3:53635478-53635497 | MS.gene049888:CDS | 35.0% | |
| GCAACATCGAAATCTTGTTA+AGG | + | chr5.3:53635471-53635490 | MS.gene049888:CDS | 35.0% | |
| GTAATAGTGTATCACAAGGA+TGG | - | chr5.3:53633680-53633699 | None:intergenic | 35.0% | |
| GTTGACGAATTAATAGGGTT+TGG | - | chr5.3:53634010-53634029 | None:intergenic | 35.0% | |
| TACCGGATACTACAAATTCT+TGG | + | chr5.3:53634294-53634313 | MS.gene049888:CDS | 35.0% | |
| TATACCTATCTAGACCCAAA+AGG | + | chr5.3:53634383-53634402 | MS.gene049888:CDS | 35.0% | |
| TGGATTCAGGAACATAAACA+AGG | - | chr5.3:53634034-53634053 | None:intergenic | 35.0% | |
| TGTACCATATTCCTACATAG+CGG | - | chr5.3:53633401-53633420 | None:intergenic | 35.0% | |
| TGTTTACCAAATCATGCCAT+CGG | + | chr5.3:53634064-53634083 | MS.gene049888:CDS | 35.0% | |
| TTATATCCAAACGTCATTCC+AGG | - | chr5.3:53633702-53633721 | None:intergenic | 35.0% | |
| TTCTCAACCAACAATAAGCT+TGG | + | chr5.3:53635216-53635235 | MS.gene049888:CDS | 35.0% | |
| TTTATTGGAATCTCACTGCT+TGG | + | chr5.3:53633736-53633755 | MS.gene049888:CDS | 35.0% | |
| TTTGAAGAAACCCATCTCAA+AGG | - | chr5.3:53633361-53633380 | None:intergenic | 35.0% | |
| ! | AATGTTGCTTGTGATGCTAT+TGG | + | chr5.3:53634652-53634671 | MS.gene049888:CDS | 35.0% |
| !! | AAGGCGTTGACGAATTAATA+GGG | - | chr5.3:53634015-53634034 | None:intergenic | 35.0% |
| !! | ACACTCCATATTTTGGATTC+AGG | - | chr5.3:53634047-53634066 | None:intergenic | 35.0% |
| !! | CAAATTTCTGAAACCCATCT+CGG | - | chr5.3:53634262-53634281 | None:intergenic | 35.0% |
| !! | CAGAGATTCGAATTTTGGTA+AGG | + | chr5.3:53634499-53634518 | MS.gene049888:intron | 35.0% |
| !! | TTTAGTTCTCAGAGATGAGA+AGG | + | chr5.3:53633617-53633636 | MS.gene049888:CDS | 35.0% |
| !!! | GAAGAAAGTTTTTTGTGGCA+AGG | + | chr5.3:53633648-53633667 | MS.gene049888:CDS | 35.0% |
| AAGTATCCGATGGCATGATT+TGG | - | chr5.3:53634073-53634092 | None:intergenic | 40.0% | |
| AAGTCAGTGGTTGTTCTCTT+TGG | + | chr5.3:53634408-53634427 | MS.gene049888:CDS | 40.0% | |
| AATGAAGACGATCCATCTTC+GGG | + | chr5.3:53633762-53633781 | MS.gene049888:CDS | 40.0% | |
| AATGCACAATGCACGATTGA+TGG | + | chr5.3:53634119-53634138 | MS.gene049888:CDS | 40.0% | |
| ACCACAGCAATGGAATTCAA+TGG | + | chr5.3:53634184-53634203 | MS.gene049888:CDS | 40.0% | |
| ACCTTCACCAAGCTTATTGT+TGG | - | chr5.3:53635226-53635245 | None:intergenic | 40.0% | |
| AGCAATGGAATTCAATGGAC+TGG | + | chr5.3:53634189-53634208 | MS.gene049888:CDS | 40.0% | |
| ATTCAGGCTACATTGCAAGA+TGG | + | chr5.3:53635361-53635380 | MS.gene049888:intron | 40.0% | |
| CAAACCGCTATGTAGGAATA+TGG | + | chr5.3:53633394-53633413 | MS.gene049888:CDS | 40.0% | |
| CCAATGTGTCAATGTTTACC+TGG | + | chr5.3:53634146-53634165 | MS.gene049888:CDS | 40.0% | |
| CCAGGTAAACATTGACACAT+TGG | - | chr5.3:53634149-53634168 | None:intergenic | 40.0% | |
| CCAGGTAATAGTGTATCACA+AGG | - | chr5.3:53633684-53633703 | None:intergenic | 40.0% | |
| CCTTGTGATACACTATTACC+TGG | + | chr5.3:53633681-53633700 | MS.gene049888:CDS | 40.0% | |
| CGATGATCTCTATATTCGAG+TGG | + | chr5.3:53634475-53634494 | MS.gene049888:CDS | 40.0% | |
| CTATTACCTGGAATGACGTT+TGG | + | chr5.3:53633693-53633712 | MS.gene049888:CDS | 40.0% | |
| CTTTCAGGAAATTCTGAGCA+AGG | + | chr5.3:53635406-53635425 | MS.gene049888:CDS | 40.0% | |
| GAATGAAGACGATCCATCTT+CGG | + | chr5.3:53633761-53633780 | MS.gene049888:CDS | 40.0% | |
| GCATATAAATCTCCCGAAGA+TGG | - | chr5.3:53633777-53633796 | None:intergenic | 40.0% | |
| GGGAAAAAAGAAAGAGATGG+AGG | + | chr5.3:53635129-53635148 | MS.gene049888:intron | 40.0% | |
| GGGAGATTTATATGCATCTG+TGG | + | chr5.3:53633782-53633801 | MS.gene049888:CDS | 40.0% | |
| GTTCTTGGTTGTTGCATTGA+AGG | + | chr5.3:53635493-53635512 | MS.gene049888:CDS | 40.0% | |
| TAGTTCCGTTACCTCTATAG+CGG | + | chr5.3:53633977-53633996 | MS.gene049888:CDS | 40.0% | |
| TATTCCTACATAGCGGTTTG+AGG | - | chr5.3:53633394-53633413 | None:intergenic | 40.0% | |
| TCCATTGAATTCCATTGCTG+TGG | - | chr5.3:53634188-53634207 | None:intergenic | 40.0% | |
| TCGACTAAAATCTGTAGGTC+AGG | + | chr5.3:53633843-53633862 | MS.gene049888:CDS | 40.0% | |
| ! | AACAATAAGCTTGGTGAAGG+TGG | + | chr5.3:53635225-53635244 | MS.gene049888:CDS | 40.0% |
| ! | ACCAACAATAAGCTTGGTGA+AGG | + | chr5.3:53635222-53635241 | MS.gene049888:CDS | 40.0% |
| ! | CCAGAAAGCATGATATGGAA+GGG | + | chr5.3:53633819-53633838 | MS.gene049888:CDS | 40.0% |
| ! | GCAATCCAGAAAGCATGATA+TGG | + | chr5.3:53633814-53633833 | MS.gene049888:CDS | 40.0% |
| ! | GTGGACAGAGATTCGAATTT+TGG | + | chr5.3:53634494-53634513 | MS.gene049888:CDS | 40.0% |
| ! | TAAGGATGGAACCTTTGAGA+TGG | + | chr5.3:53633347-53633366 | MS.gene049888:CDS | 40.0% |
| ! | TCCAGAAAGCATGATATGGA+AGG | + | chr5.3:53633818-53633837 | MS.gene049888:CDS | 40.0% |
| ! | TTCCATTGCTGTGGTGATTT+TGG | - | chr5.3:53634179-53634198 | None:intergenic | 40.0% |
| ! | TTGCTCGAATCGTCTTTTGT+TGG | - | chr5.3:53633471-53633490 | None:intergenic | 40.0% |
| !! | AAGGATGGAACCTTTGAGAT+GGG | + | chr5.3:53633348-53633367 | MS.gene049888:CDS | 40.0% |
| !! | AATTCAATGGACTGGACACA+AGG | + | chr5.3:53634197-53634216 | MS.gene049888:CDS | 40.0% |
| !! | CAAGGCGTTGACGAATTAAT+AGG | - | chr5.3:53634016-53634035 | None:intergenic | 40.0% |
| !! | TTCTCCTTTTGGGTCTAGAT+AGG | - | chr5.3:53634390-53634409 | None:intergenic | 40.0% |
| !!! | AACCACTGACTTCTCCTTTT+GGG | - | chr5.3:53634400-53634419 | None:intergenic | 40.0% |
| !!! | GGTGATTTTGGCTTAAATCC+AGG | - | chr5.3:53634167-53634186 | None:intergenic | 40.0% |
| AAATATCCCCGTTCGAAGAG+TGG | + | chr5.3:53633422-53633441 | MS.gene049888:CDS | 45.0% | |
| AAATCTGTAGGTCAGGACCA+TGG | + | chr5.3:53633850-53633869 | MS.gene049888:CDS | 45.0% | |
| AACCCAAACCACTCTTCGAA+CGG | - | chr5.3:53633433-53633452 | None:intergenic | 45.0% | |
| AAGTCCTCAAACCGCTATGT+AGG | + | chr5.3:53633387-53633406 | MS.gene049888:CDS | 45.0% | |
| ACCACAATGACTCTCTTGTC+TGG | + | chr5.3:53633529-53633548 | MS.gene049888:CDS | 45.0% | |
| ACCAGACAAGAGAGTCATTG+TGG | - | chr5.3:53633533-53633552 | None:intergenic | 45.0% | |
| AGACTTTCGCAAAGTAGCGA+AGG | + | chr5.3:53634452-53634471 | MS.gene049888:CDS | 45.0% | |
| AGCCAAAATCACCACAGCAA+TGG | + | chr5.3:53634174-53634193 | MS.gene049888:CDS | 45.0% | |
| AGGGCTCGACTAAAATCTGT+AGG | + | chr5.3:53633838-53633857 | MS.gene049888:CDS | 45.0% | |
| ATAGGTCATATACATGGGCG+TGG | + | chr5.3:53634593-53634612 | MS.gene049888:intron | 45.0% | |
| CCCTTCCATATCATGCTTTC+TGG | - | chr5.3:53633822-53633841 | None:intergenic | 45.0% | |
| GTTGGTTGAGAAGTTATCGG+TGG | - | chr5.3:53635208-53635227 | None:intergenic | 45.0% | |
| GTTGTGCAGCTCTTGAACAA+TGG | + | chr5.3:53633591-53633610 | MS.gene049888:CDS | 45.0% | |
| TAGGTCATATACATGGGCGT+GGG | + | chr5.3:53634594-53634613 | MS.gene049888:intron | 45.0% | |
| TGGGAAGAAATTGGTCATGG+TGG | + | chr5.3:53634613-53634632 | MS.gene049888:CDS | 45.0% | |
| TTGTTCAAGAGCTGCACAAC+AGG | - | chr5.3:53633591-53633610 | None:intergenic | 45.0% | |
| ! | CATTGTGGTTGAGAAGCACA+AGG | - | chr5.3:53633518-53633537 | None:intergenic | 45.0% |
| ! | GAGATGGGTTTCTTCAAACC+TGG | + | chr5.3:53633363-53633382 | MS.gene049888:CDS | 45.0% |
| ! | GAGTACCGCTATAGAGGTAA+CGG | - | chr5.3:53633985-53634004 | None:intergenic | 45.0% |
| ! | TTGGTTGAGTACCGCTATAG+AGG | - | chr5.3:53633991-53634010 | None:intergenic | 45.0% |
| !! | AAGCTTGGTGAAGGTGGTTT+TGG | + | chr5.3:53635231-53635250 | MS.gene049888:CDS | 45.0% |
| !!! | CAACCACTGACTTCTCCTTT+TGG | - | chr5.3:53634401-53634420 | None:intergenic | 45.0% |
| !!! | TGGTTTTGGACCCGTATACA+AGG | + | chr5.3:53635245-53635264 | MS.gene049888:CDS | 45.0% |
| ACATGGGCGTGGGAAGAAAT+TGG | + | chr5.3:53634604-53634623 | MS.gene049888:CDS | 50.0% | |
| ACCCAAACCACTCTTCGAAC+GGG | - | chr5.3:53633432-53633451 | None:intergenic | 50.0% | |
| CCACTAGAGAGAGGATTCCA+TGG | - | chr5.3:53633870-53633889 | None:intergenic | 50.0% | |
| CCATGGAATCCTCTCTCTAG+TGG | + | chr5.3:53633867-53633886 | MS.gene049888:CDS | 50.0% | |
| CCTCTCTCTAGTGGAGTTGT+CGG | + | chr5.3:53633876-53633895 | MS.gene049888:CDS | 50.0% | |
| GACCCAAAAGGAGAAGTCAG+TGG | + | chr5.3:53634395-53634414 | MS.gene049888:CDS | 50.0% | |
| GCGGGATCAAAAACCGAGAT+GGG | + | chr5.3:53634246-53634265 | MS.gene049888:CDS | 50.0% | |
| GCGTGGGAAGAAATTGGTCA+TGG | + | chr5.3:53634610-53634629 | MS.gene049888:CDS | 50.0% | |
| TAGCGGTTTGAGGACTTACC+AGG | - | chr5.3:53633384-53633403 | None:intergenic | 50.0% | |
| TGCGGGATCAAAAACCGAGA+TGG | + | chr5.3:53634245-53634264 | MS.gene049888:CDS | 50.0% | |
| ! | CGTGGTGGAAATTGGAGTTG+CGG | + | chr5.3:53634227-53634246 | MS.gene049888:CDS | 50.0% |
| ! | GATGTGTGCGTGGTGGAAAT+TGG | + | chr5.3:53634219-53634238 | MS.gene049888:CDS | 50.0% |
| ! | GTGGTGGAAATTGGAGTTGC+GGG | + | chr5.3:53634228-53634247 | MS.gene049888:CDS | 50.0% |
| ACACAAGGATGTGTGCGTGG+TGG | + | chr5.3:53634212-53634231 | MS.gene049888:CDS | 55.0% | |
| CCCAAACCACTCTTCGAACG+GGG | - | chr5.3:53633431-53633450 | None:intergenic | 55.0% | |
| CCCCGTTCGAAGAGTGGTTT+GGG | + | chr5.3:53633428-53633447 | MS.gene049888:CDS | 55.0% | |
| CCGACAACTCCACTAGAGAG+AGG | - | chr5.3:53633879-53633898 | None:intergenic | 55.0% | |
| TCCCCGTTCGAAGAGTGGTT+TGG | + | chr5.3:53633427-53633446 | MS.gene049888:CDS | 55.0% | |
| TGGACACAAGGATGTGTGCG+TGG | + | chr5.3:53634209-53634228 | MS.gene049888:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 53633335 | 53635577 | 53633335 | ID=MS.gene049888 |
| chr5.3 | mRNA | 53633335 | 53635577 | 53633335 | ID=MS.gene049888.t1;Parent=MS.gene049888 |
| chr5.3 | exon | 53633335 | 53634515 | 53633335 | ID=MS.gene049888.t1.exon1;Parent=MS.gene049888.t1 |
| chr5.3 | CDS | 53633335 | 53634515 | 53633335 | ID=cds.MS.gene049888.t1;Parent=MS.gene049888.t1 |
| chr5.3 | exon | 53634597 | 53634713 | 53634597 | ID=MS.gene049888.t1.exon2;Parent=MS.gene049888.t1 |
| chr5.3 | CDS | 53634597 | 53634713 | 53634597 | ID=cds.MS.gene049888.t1;Parent=MS.gene049888.t1 |
| chr5.3 | exon | 53635130 | 53635266 | 53635130 | ID=MS.gene049888.t1.exon3;Parent=MS.gene049888.t1 |
| chr5.3 | CDS | 53635130 | 53635266 | 53635130 | ID=cds.MS.gene049888.t1;Parent=MS.gene049888.t1 |
| chr5.3 | exon | 53635367 | 53635577 | 53635367 | ID=MS.gene049888.t1.exon4;Parent=MS.gene049888.t1 |
| chr5.3 | CDS | 53635367 | 53635577 | 53635367 | ID=cds.MS.gene049888.t1;Parent=MS.gene049888.t1 |
| Gene Sequence |
| Protein sequence |
