Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050378.t1 | XP_003611121.1 | 87.8 | 115 | 14 | 0 | 1 | 115 | 1 | 115 | 8.10E-25 | 124 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050378.t1 | G7KDE4 | 87.8 | 115 | 14 | 0 | 1 | 115 | 1 | 115 | 5.8e-25 | 124.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050378 | MS.gene072116 | 0.800637 | 1.31E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050378.t1 | MTR_5g010590 | 95.694 | 209 | 9 | 0 | 1 | 209 | 1 | 209 | 2.03e-133 | 373 |
MS.gene050378.t1 | MTR_5g010590 | 95.804 | 143 | 6 | 0 | 1 | 143 | 1 | 143 | 4.61e-82 | 242 |
MS.gene050378.t1 | MTR_8g097320 | 50.000 | 186 | 89 | 2 | 28 | 209 | 15 | 200 | 2.79e-54 | 172 |
MS.gene050378.t1 | MTR_8g097320 | 48.677 | 189 | 90 | 3 | 28 | 209 | 15 | 203 | 2.47e-52 | 167 |
MS.gene050378.t1 | MTR_1g100647 | 57.600 | 125 | 53 | 0 | 83 | 207 | 85 | 209 | 6.60e-44 | 146 |
MS.gene050378.t1 | MTR_8g031370 | 59.542 | 131 | 51 | 1 | 77 | 207 | 72 | 200 | 8.75e-44 | 145 |
MS.gene050378.t1 | MTR_7g076730 | 54.545 | 121 | 55 | 0 | 87 | 207 | 13 | 133 | 1.66e-40 | 135 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050378.t1 | AT5G23750 | 60.000 | 125 | 50 | 0 | 83 | 207 | 105 | 229 | 6.10e-48 | 157 |
MS.gene050378.t1 | AT5G23750 | 60.000 | 125 | 50 | 0 | 83 | 207 | 77 | 201 | 8.99e-48 | 155 |
MS.gene050378.t1 | AT5G23750 | 60.000 | 125 | 50 | 0 | 83 | 207 | 78 | 202 | 1.19e-47 | 155 |
MS.gene050378.t1 | AT3G48940 | 57.692 | 130 | 54 | 1 | 79 | 207 | 46 | 175 | 1.47e-43 | 144 |
MS.gene050378.t1 | AT3G61260 | 55.385 | 130 | 58 | 0 | 78 | 207 | 83 | 212 | 9.56e-43 | 143 |
MS.gene050378.t1 | AT2G45820 | 57.778 | 135 | 57 | 0 | 73 | 207 | 56 | 190 | 1.55e-38 | 132 |
MS.gene050378.t1 | AT1G63295 | 40.310 | 129 | 74 | 2 | 82 | 207 | 23 | 151 | 8.84e-21 | 85.1 |
MS.gene050378.t1 | AT1G63295 | 42.857 | 112 | 64 | 0 | 82 | 193 | 63 | 174 | 2.98e-20 | 84.7 |
MS.gene050378.t1 | AT4G00670 | 38.889 | 108 | 65 | 1 | 101 | 207 | 16 | 123 | 3.93e-18 | 77.4 |
Find 35 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCAATCTTCTGTTGGATTA+TGG | 0.203365 | 5.2:+3725929 | MS.gene050378:CDS |
AAGCATGCAAACAATTTCTT+TGG | 0.279239 | 5.2:-3726734 | None:intergenic |
AGGGGATCATGATGATAAAA+AGG | 0.323089 | 5.2:+3725600 | MS.gene050378:CDS |
GCAATCTTCTGTTGGATTAT+GGG | 0.326593 | 5.2:+3725930 | MS.gene050378:CDS |
CATGCTGATAATAAGGAAAC+AGG | 0.326940 | 5.2:+3725580 | MS.gene050378:CDS |
AAAAGACAAAGGCAGAAAAT+AGG | 0.344478 | 5.2:+3725798 | MS.gene050378:CDS |
AGATGATCATGCTGATAATA+AGG | 0.356606 | 5.2:+3725573 | MS.gene050378:CDS |
GGGGAAAGCTCTTCAGGAAC+AGG | 0.393746 | 5.2:-3724703 | None:intergenic |
GCTTTCCCCTGTTGTGGAAA+AGG | 0.394410 | 5.2:+3724717 | MS.gene050378:CDS |
ACAACAGGGGAAAGCTCTTC+AGG | 0.423226 | 5.2:-3724709 | None:intergenic |
ACCACAGCTACAGTCTCTTC+TGG | 0.424564 | 5.2:+3724678 | MS.gene050378:CDS |
TGGCCTGCTGAGTAGGCTCC+TGG | 0.430478 | 5.2:-3724771 | None:intergenic |
TGAAGAGCTTTCCCCTGTTG+TGG | 0.460075 | 5.2:+3724711 | MS.gene050378:CDS |
TACAAGAAGCAATCTTCTGT+TGG | 0.476983 | 5.2:+3725922 | MS.gene050378:CDS |
AAGCAAGAAATCATCTATAG+AGG | 0.477360 | 5.2:+3725957 | MS.gene050378:CDS |
TGATTCAGTCTTGTTGATGC+TGG | 0.478635 | 5.2:-3724656 | None:intergenic |
AATTGTAGCAGAGAAAAGAT+TGG | 0.480532 | 5.2:+3725748 | MS.gene050378:CDS |
ATTGGCTTTAATTAAAGCAT+GGG | 0.513985 | 5.2:+3725766 | MS.gene050378:CDS |
GATTGGCTTTAATTAAAGCA+TGG | 0.523135 | 5.2:+3725765 | MS.gene050378:CDS |
CAGCCAGGAGCCTACTCAGC+AGG | 0.535469 | 5.2:+3724768 | MS.gene050378:CDS |
GTTGAGATGGCCTGCTGAGT+AGG | 0.537629 | 5.2:-3724778 | None:intergenic |
GGAAGAATGTCTGGAGCTAG+AGG | 0.552801 | 5.2:+3726676 | MS.gene050378:CDS |
CTGATCATCAAGTGTTGAGA+TGG | 0.554532 | 5.2:-3724791 | None:intergenic |
GGCACAACTCAAGAAATTTG+AGG | 0.555597 | 5.2:+3725978 | MS.gene050378:CDS |
AAGCAACATCAGTATCAGCC+AGG | 0.580435 | 5.2:+3724753 | MS.gene050378:CDS |
ATTTCTTTGGTGCAACTCCA+CGG | 0.591194 | 5.2:-3726721 | None:intergenic |
GCTGCAAAGTTTCGTAGCCG+TGG | 0.595886 | 5.2:+3726704 | MS.gene050378:CDS |
ATCTTCTGTTGGATTATGGG+AGG | 0.596122 | 5.2:+3725933 | MS.gene050378:CDS |
ATGCTGATAATAAGGAAACA+GGG | 0.613410 | 5.2:+3725581 | MS.gene050378:CDS |
CAAGTCATGGGAGAATCAGA+AGG | 0.618923 | 5.2:+3724631 | None:intergenic |
TCCAGAAGAGACTGTAGCTG+TGG | 0.625821 | 5.2:-3724679 | None:intergenic |
TGCTGATAATAAGGAAACAG+GGG | 0.629518 | 5.2:+3725582 | MS.gene050378:CDS |
GGAAGAAAGTGAAAAGACAA+AGG | 0.645779 | 5.2:+3725787 | MS.gene050378:CDS |
GGGAAAGCTCTTCAGGAACA+GGG | 0.646598 | 5.2:-3724702 | None:intergenic |
GCTAAGGTCTCAACTGACAG+AGG | 0.669431 | 5.2:+3725625 | MS.gene050378:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGAAAAATGTATAAATAAA+GGG | - | chr5.2:3726175-3726194 | None:intergenic | 10.0% |
!! | TAAGAAAAATGTATAAATAA+AGG | - | chr5.2:3726176-3726195 | None:intergenic | 10.0% |
!!! | ACAAAATTGTTTTAATTAAT+AGG | + | chr5.2:3726544-3726563 | MS.gene050378:intron | 10.0% |
!!! | TTTTAATTAATAGGAAAATT+TGG | + | chr5.2:3726553-3726572 | MS.gene050378:intron | 10.0% |
!! | AATTAGAGTTATATTGTATT+GGG | - | chr5.2:3726110-3726129 | None:intergenic | 15.0% |
!! | AGAAAAATGTATAAATAAAG+GGG | - | chr5.2:3726174-3726193 | None:intergenic | 15.0% |
!! | TAATTAGAGTTATATTGTAT+TGG | - | chr5.2:3726111-3726130 | None:intergenic | 15.0% |
!! | TATCGTATTTATAGTTAATA+TGG | + | chr5.2:3725384-3725403 | MS.gene050378:intron | 15.0% |
!!! | AGTTAATATGGAAATTTTTT+GGG | + | chr5.2:3725396-3725415 | MS.gene050378:intron | 15.0% |
!!! | TAGTTAATATGGAAATTTTT+TGG | + | chr5.2:3725395-3725414 | MS.gene050378:intron | 15.0% |
!! | AAAGTGGAATATATTGTATT+GGG | - | chr5.2:3726151-3726170 | None:intergenic | 20.0% |
!! | ATAGTCATAAATCTATAAGA+TGG | - | chr5.2:3725831-3725850 | None:intergenic | 20.0% |
!! | TAGTCATAAATCTATAAGAT+GGG | - | chr5.2:3725830-3725849 | None:intergenic | 20.0% |
!!! | CTATCTTGTTTAAATTGTTA+AGG | + | chr5.2:3725181-3725200 | MS.gene050378:intron | 20.0% |
!!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr5.2:3726041-3726060 | None:intergenic | 20.0% |
!!! | GTTAATATGGAAATTTTTTG+GGG | + | chr5.2:3725397-3725416 | MS.gene050378:intron | 20.0% |
!!! | GTTTTAGACTTCAAAATTTT+AGG | - | chr5.2:3725434-3725453 | None:intergenic | 20.0% |
!!! | GTTTTGTTTTGTTGTAAATT+AGG | + | chr5.2:3726273-3726292 | MS.gene050378:intron | 20.0% |
! | AATAGTTGAAGCTCAAAAAA+GGG | + | chr5.2:3726655-3726674 | MS.gene050378:CDS | 25.0% |
! | AGCTTAATTGTTTAGAAAGA+AGG | - | chr5.2:3725337-3725356 | None:intergenic | 25.0% |
! | CCTAGAACAAATAAAATATG+AGG | + | chr5.2:3725311-3725330 | MS.gene050378:intron | 25.0% |
! | GAAAGTGGAATATATTGTAT+TGG | - | chr5.2:3726152-3726171 | None:intergenic | 25.0% |
! | TCTAGTATAATGAAGGTTTA+GGG | - | chr5.2:3726412-3726431 | None:intergenic | 25.0% |
! | TTCTAGTATAATGAAGGTTT+AGG | - | chr5.2:3726413-3726432 | None:intergenic | 25.0% |
! | TTTAAGCCTCCAAATATATT+AGG | - | chr5.2:3725223-3725242 | None:intergenic | 25.0% |
!! | AATTTTGTAAGTTACCAATG+AGG | - | chr5.2:3726532-3726551 | None:intergenic | 25.0% |
!! | ATGAATAAAGTGAGTATTGT+GGG | - | chr5.2:3726471-3726490 | None:intergenic | 25.0% |
!! | ATTTTGTAAGTTACCAATGA+GGG | - | chr5.2:3726531-3726550 | None:intergenic | 25.0% |
!! | TCATCATATTTTTCATACAG+AGG | + | chr5.2:3725546-3725565 | MS.gene050378:intron | 25.0% |
!! | TTGAAATGACTCAGTTATTT+TGG | - | chr5.2:3726064-3726083 | None:intergenic | 25.0% |
!!! | ATTGGCTTTAATTAAAGCAT+GGG | + | chr5.2:3725766-3725785 | MS.gene050378:CDS | 25.0% |
!!! | CCTCATATTTTATTTGTTCT+AGG | - | chr5.2:3725314-3725333 | None:intergenic | 25.0% |
!!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr5.2:3726042-3726061 | None:intergenic | 25.0% |
!!! | TGAAATGACTCAGTTATTTT+GGG | - | chr5.2:3726063-3726082 | None:intergenic | 25.0% |
AAAAGACAAAGGCAGAAAAT+AGG | + | chr5.2:3725798-3725817 | MS.gene050378:CDS | 30.0% | |
AAATTGTTAAGGTCATTGTC+AGG | + | chr5.2:3725192-3725211 | MS.gene050378:intron | 30.0% | |
AAGCAAGAAATCATCTATAG+AGG | + | chr5.2:3725957-3725976 | MS.gene050378:CDS | 30.0% | |
AAGCATGCAAACAATTTCTT+TGG | - | chr5.2:3726737-3726756 | None:intergenic | 30.0% | |
AATTGTAGCAGAGAAAAGAT+TGG | + | chr5.2:3725748-3725767 | MS.gene050378:CDS | 30.0% | |
AATTGTTAAGGTCATTGTCA+GGG | + | chr5.2:3725193-3725212 | MS.gene050378:intron | 30.0% | |
AGATGATCATGCTGATAATA+AGG | + | chr5.2:3725573-3725592 | MS.gene050378:CDS | 30.0% | |
ATGCTGATAATAAGGAAACA+GGG | + | chr5.2:3725581-3725600 | MS.gene050378:CDS | 30.0% | |
CAATAGTTGAAGCTCAAAAA+AGG | + | chr5.2:3726654-3726673 | MS.gene050378:CDS | 30.0% | |
CATCTCTTCTAGTATAATGA+AGG | - | chr5.2:3726419-3726438 | None:intergenic | 30.0% | |
TCATTATACTAGAAGAGATG+CGG | + | chr5.2:3726419-3726438 | MS.gene050378:intron | 30.0% | |
TGATGATAAAAAGGATGCTA+AGG | + | chr5.2:3725609-3725628 | MS.gene050378:CDS | 30.0% | |
TGTATAAATAAAGGGGAAAG+TGG | - | chr5.2:3726167-3726186 | None:intergenic | 30.0% | |
! | ATATTAGTTGTTTCCCTCAT+TGG | + | chr5.2:3726515-3726534 | MS.gene050378:intron | 30.0% |
! | ATTTTGTTGCATTAGATGCT+GGG | + | chr5.2:3725717-3725736 | MS.gene050378:intron | 30.0% |
! | GAAGTCTAAAACCTTTACTT+GGG | + | chr5.2:3725442-3725461 | MS.gene050378:intron | 30.0% |
! | GATGAATAAAGTGAGTATTG+TGG | - | chr5.2:3726472-3726491 | None:intergenic | 30.0% |
! | TGAAGTCTAAAACCTTTACT+TGG | + | chr5.2:3725441-3725460 | MS.gene050378:intron | 30.0% |
!! | GATTGGCTTTAATTAAAGCA+TGG | + | chr5.2:3725765-3725784 | MS.gene050378:CDS | 30.0% |
AGAAAATGGGTCAGATATTC+CGG | - | chr5.2:3726028-3726047 | None:intergenic | 35.0% | |
AGCAATCTTCTGTTGGATTA+TGG | + | chr5.2:3725929-3725948 | MS.gene050378:CDS | 35.0% | |
AGCCTCCAAATATATTAGGT+CGG | - | chr5.2:3725219-3725238 | None:intergenic | 35.0% | |
AGGGGATCATGATGATAAAA+AGG | + | chr5.2:3725600-3725619 | MS.gene050378:CDS | 35.0% | |
CATGCTGATAATAAGGAAAC+AGG | + | chr5.2:3725580-3725599 | MS.gene050378:CDS | 35.0% | |
CATTATACTAGAAGAGATGC+GGG | + | chr5.2:3726420-3726439 | MS.gene050378:intron | 35.0% | |
GAGCATGATGAAAGATGAAA+TGG | + | chr5.2:3725887-3725906 | MS.gene050378:intron | 35.0% | |
GCAATCTTCTGTTGGATTAT+GGG | + | chr5.2:3725930-3725949 | MS.gene050378:CDS | 35.0% | |
GGAAGAAAGTGAAAAGACAA+AGG | + | chr5.2:3725787-3725806 | MS.gene050378:CDS | 35.0% | |
TACAAGAAGCAATCTTCTGT+TGG | + | chr5.2:3725922-3725941 | MS.gene050378:CDS | 35.0% | |
TCAAAAAAGGGAAGAATGTC+TGG | + | chr5.2:3726667-3726686 | MS.gene050378:CDS | 35.0% | |
TGCTGATAATAAGGAAACAG+GGG | + | chr5.2:3725582-3725601 | MS.gene050378:CDS | 35.0% | |
! | CAAACTGACTCAGATAAAAC+GGG | + | chr5.2:3726211-3726230 | MS.gene050378:intron | 35.0% |
! | CATTTTGTTGCATTAGATGC+TGG | + | chr5.2:3725716-3725735 | MS.gene050378:intron | 35.0% |
! | CCAAACTGACTCAGATAAAA+CGG | + | chr5.2:3726210-3726229 | MS.gene050378:intron | 35.0% |
AAAAGCTCATGCAGTGATCA+GGG | - | chr5.2:3725489-3725508 | None:intergenic | 40.0% | |
AAAGATGAAATGGTCACGCA+GGG | + | chr5.2:3725897-3725916 | MS.gene050378:intron | 40.0% | |
ACAAAGGCAGAAAATAGGCA+AGG | + | chr5.2:3725803-3725822 | MS.gene050378:intron | 40.0% | |
ATCTTCTGTTGGATTATGGG+AGG | + | chr5.2:3725933-3725952 | MS.gene050378:CDS | 40.0% | |
CATCTCTTCTAAGCACTCTT+GGG | + | chr5.2:3726444-3726463 | MS.gene050378:intron | 40.0% | |
GAAAATGGGTCAGATATTCC+GGG | - | chr5.2:3726027-3726046 | None:intergenic | 40.0% | |
GGCACAACTCAAGAAATTTG+AGG | + | chr5.2:3725978-3725997 | MS.gene050378:CDS | 40.0% | |
TCATCTCTTCTAAGCACTCT+TGG | + | chr5.2:3726443-3726462 | MS.gene050378:intron | 40.0% | |
! | AAACCTTTACTTGGGTTGCT+TGG | + | chr5.2:3725450-3725469 | MS.gene050378:intron | 40.0% |
! | ATTTCTTTGGTGCAACTCCA+CGG | - | chr5.2:3726724-3726743 | None:intergenic | 40.0% |
! | CCGTTTTATCTGAGTCAGTT+TGG | - | chr5.2:3726213-3726232 | None:intergenic | 40.0% |
! | CTGATTCCTTTTCCACAACA+GGG | - | chr5.2:3724726-3724745 | None:intergenic | 40.0% |
! | TCTGATTCCTTTTCCACAAC+AGG | - | chr5.2:3724727-3724746 | None:intergenic | 40.0% |
! | TGATTCCTTTTCCACAACAG+GGG | - | chr5.2:3724725-3724744 | None:intergenic | 40.0% |
!! | CTGATCATCAAGTGTTGAGA+TGG | - | chr5.2:3724794-3724813 | None:intergenic | 40.0% |
!! | GACGGAGGGAGTATTATTTA+TGG | + | chr5.2:3726233-3726252 | MS.gene050378:intron | 40.0% |
!! | TGATTCAGTCTTGTTGATGC+TGG | - | chr5.2:3724659-3724678 | None:intergenic | 40.0% |
AAGCAACATCAGTATCAGCC+AGG | + | chr5.2:3724753-3724772 | MS.gene050378:CDS | 45.0% | |
CAAAAGCTCATGCAGTGATC+AGG | - | chr5.2:3725490-3725509 | None:intergenic | 45.0% | |
CAGGGCCGACCTAATATATT+TGG | + | chr5.2:3725211-3725230 | MS.gene050378:intron | 45.0% | |
CGAACTTGTGCATGTAACAG+AGG | - | chr5.2:3726381-3726400 | None:intergenic | 45.0% | |
CGACACATTTCAGTTCCACA+AGG | - | chr5.2:3726336-3726355 | None:intergenic | 45.0% | |
CTGACTCAGATAAAACGGGA+CGG | + | chr5.2:3726215-3726234 | MS.gene050378:intron | 45.0% | |
GAAAGATGAAATGGTCACGC+AGG | + | chr5.2:3725896-3725915 | MS.gene050378:intron | 45.0% | |
GGCCGACCTAATATATTTGG+AGG | + | chr5.2:3725214-3725233 | MS.gene050378:intron | 45.0% | |
ACAACAGGGGAAAGCTCTTC+AGG | - | chr5.2:3724712-3724731 | None:intergenic | 50.0% | |
ACCACAGCTACAGTCTCTTC+TGG | + | chr5.2:3724678-3724697 | MS.gene050378:CDS | 50.0% | |
ACTCAGATAAAACGGGACGG+AGG | + | chr5.2:3726218-3726237 | MS.gene050378:intron | 50.0% | |
ATGGGTCAGATATTCCGGGA+CGG | - | chr5.2:3726023-3726042 | None:intergenic | 50.0% | |
ATTAGTTACTCCCTCCGTCC+CGG | + | chr5.2:3726006-3726025 | MS.gene050378:intron | 50.0% | |
CTCAGATAAAACGGGACGGA+GGG | + | chr5.2:3726219-3726238 | MS.gene050378:intron | 50.0% | |
GACAAATCTCTCGAGCCTTG+TGG | + | chr5.2:3726318-3726337 | MS.gene050378:intron | 50.0% | |
GCTAAGGTCTCAACTGACAG+AGG | + | chr5.2:3725625-3725644 | MS.gene050378:CDS | 50.0% | |
GCTTTCCCCTGTTGTGGAAA+AGG | + | chr5.2:3724717-3724736 | MS.gene050378:CDS | 50.0% | |
GGGAAAGCTCTTCAGGAACA+GGG | - | chr5.2:3724705-3724724 | None:intergenic | 50.0% | |
TCCAGAAGAGACTGTAGCTG+TGG | - | chr5.2:3724682-3724701 | None:intergenic | 50.0% | |
TGAAGAGCTTTCCCCTGTTG+TGG | + | chr5.2:3724711-3724730 | MS.gene050378:CDS | 50.0% | |
! | GGAAGAATGTCTGGAGCTAG+AGG | + | chr5.2:3726676-3726695 | MS.gene050378:CDS | 50.0% |
GCTCATGCAGTGATCAGGGT+TGG | - | chr5.2:3725485-3725504 | None:intergenic | 55.0% | |
GCTGCAAAGTTTCGTAGCCG+TGG | + | chr5.2:3726704-3726723 | MS.gene050378:CDS | 55.0% | |
GGGCCAAGCAACCCAAGTAA+AGG | - | chr5.2:3725456-3725475 | None:intergenic | 55.0% | |
GGGGAAAGCTCTTCAGGAAC+AGG | - | chr5.2:3724706-3724725 | None:intergenic | 55.0% | |
GTCAGATATTCCGGGACGGA+GGG | - | chr5.2:3726019-3726038 | None:intergenic | 55.0% | |
GTTGAGATGGCCTGCTGAGT+AGG | - | chr5.2:3724781-3724800 | None:intergenic | 55.0% | |
! | ACTTGGGTTGCTTGGCCCTT+GGG | + | chr5.2:3725458-3725477 | MS.gene050378:intron | 55.0% |
! | TACTTGGGTTGCTTGGCCCT+TGG | + | chr5.2:3725457-3725476 | MS.gene050378:intron | 55.0% |
GGTCAGATATTCCGGGACGG+AGG | - | chr5.2:3726020-3726039 | None:intergenic | 60.0% | |
! | CTTGGGTTGCTTGGCCCTTG+GGG | + | chr5.2:3725459-3725478 | MS.gene050378:intron | 60.0% |
!! | AGTGATCAGGGTTGGCCCCA+AGG | - | chr5.2:3725477-3725496 | None:intergenic | 60.0% |
!! | GTGATCAGGGTTGGCCCCAA+GGG | - | chr5.2:3725476-3725495 | None:intergenic | 60.0% |
CAGCCAGGAGCCTACTCAGC+AGG | + | chr5.2:3724768-3724787 | MS.gene050378:CDS | 65.0% | |
TGGCCTGCTGAGTAGGCTCC+TGG | - | chr5.2:3724774-3724793 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 3724637 | 3726766 | 3724637 | ID=MS.gene050378 |
chr5.2 | mRNA | 3724637 | 3726766 | 3724637 | ID=MS.gene050378.t1;Parent=MS.gene050378 |
chr5.2 | exon | 3724637 | 3724814 | 3724637 | ID=MS.gene050378.t1.exon1;Parent=MS.gene050378.t1 |
chr5.2 | CDS | 3724637 | 3724814 | 3724637 | ID=cds.MS.gene050378.t1;Parent=MS.gene050378.t1 |
chr5.2 | exon | 3725566 | 3725646 | 3725566 | ID=MS.gene050378.t1.exon2;Parent=MS.gene050378.t1 |
chr5.2 | CDS | 3725566 | 3725646 | 3725566 | ID=cds.MS.gene050378.t1;Parent=MS.gene050378.t1 |
chr5.2 | exon | 3725732 | 3725819 | 3725732 | ID=MS.gene050378.t1.exon3;Parent=MS.gene050378.t1 |
chr5.2 | CDS | 3725732 | 3725819 | 3725732 | ID=cds.MS.gene050378.t1;Parent=MS.gene050378.t1 |
chr5.2 | exon | 3725918 | 3725999 | 3725918 | ID=MS.gene050378.t1.exon4;Parent=MS.gene050378.t1 |
chr5.2 | CDS | 3725918 | 3725999 | 3725918 | ID=cds.MS.gene050378.t1;Parent=MS.gene050378.t1 |
chr5.2 | exon | 3726566 | 3726766 | 3726566 | ID=MS.gene050378.t1.exon5;Parent=MS.gene050378.t1 |
chr5.2 | CDS | 3726566 | 3726766 | 3726566 | ID=cds.MS.gene050378.t1;Parent=MS.gene050378.t1 |
Gene Sequence |
Protein sequence |