AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050523


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050523.t1 MTR_7g114990 97.436 351 9 0 1 351 1 351 0.0 710
MS.gene050523.t1 MTR_7g114980 83.573 347 49 3 8 346 4 350 0.0 588
MS.gene050523.t1 MTR_7g115010 77.193 342 59 3 9 346 5 331 0.0 535
MS.gene050523.t1 MTR_7g114980 82.353 289 43 3 8 288 4 292 1.90e-172 481
MS.gene050523.t1 MTR_1g102750 64.286 336 117 2 13 345 5 340 3.87e-167 469
MS.gene050523.t1 MTR_7g114970 65.579 337 111 4 13 345 7 342 1.58e-165 466
MS.gene050523.t1 MTR_7g114970 69.286 280 81 4 13 288 7 285 2.44e-143 407
MS.gene050523.t1 MTR_7g114970 69.176 279 81 4 13 287 7 284 1.74e-142 405
MS.gene050523.t1 MTR_1g102750 66.548 281 91 2 13 290 5 285 6.87e-142 404
MS.gene050523.t1 MTR_7g021680 58.434 332 129 6 16 344 7 332 3.13e-138 396
MS.gene050523.t1 MTR_7g021820 58.434 332 129 6 16 344 7 332 3.13e-138 396
MS.gene050523.t1 MTR_7g021850 57.313 335 134 6 13 344 4 332 3.32e-136 391
MS.gene050523.t1 MTR_7g114970 66.667 246 79 2 103 345 3 248 4.99e-122 352
MS.gene050523.t1 MTR_7g114970 71.066 197 55 2 13 208 7 202 3.02e-101 297
MS.gene050523.t1 MTR_7g114970 65.000 200 67 2 149 345 1 200 1.56e-93 277
MS.gene050523.t1 MTR_7g067855 66.879 157 17 2 230 351 5 161 2.04e-63 199
MS.gene050523.t1 MTR_7g021825 58.710 155 60 3 159 310 7 160 1.87e-62 197
MS.gene050523.t1 MTR_1g102740 58.491 106 44 0 240 345 3 108 2.17e-41 140
MS.gene050523.t1 MTR_7g021670 52.713 129 59 2 13 141 4 130 7.38e-39 139
MS.gene050523.t1 MTR_7g021670 52.830 106 46 2 239 344 145 246 1.73e-33 124
MS.gene050523.t1 MTR_6g035180 93.750 64 4 0 288 351 7 70 9.48e-36 125
MS.gene050523.t1 MTR_1g047250 30.599 317 201 9 17 318 5 317 1.89e-31 121
MS.gene050523.t1 MTR_3g449790 29.846 325 192 12 16 316 38 350 3.03e-27 110
MS.gene050523.t1 MTR_3g449790 29.538 325 187 12 16 316 38 344 3.82e-27 110
MS.gene050523.t1 MTR_3g092140 27.011 348 210 14 25 342 46 379 1.47e-25 107
MS.gene050523.t1 MTR_1g042730 27.545 334 183 12 18 302 66 389 7.14e-24 102
MS.gene050523.t1 MTR_4g092750 27.986 293 184 9 18 301 6 280 1.16e-21 94.4
MS.gene050523.t1 MTR_4g092750 27.931 290 182 9 18 298 6 277 3.00e-20 89.7
MS.gene050523.t1 MTR_8g088160 27.572 243 132 9 22 226 48 284 5.03e-20 89.7
MS.gene050523.t1 MTR_4g092750 31.963 219 134 6 18 227 6 218 1.25e-19 88.2
MS.gene050523.t1 MTR_7g021685 50.000 58 29 0 13 70 4 61 2.10e-13 66.6
MS.gene050523.t1 MTR_4g072060 27.628 333 163 13 16 316 3 289 4.93e-13 69.3
MS.gene050523.t1 MTR_6g073110 26.087 345 187 14 9 328 2 303 5.01e-13 69.3
MS.gene050523.t1 MTR_4g036845 26.000 300 163 10 37 314 20 282 6.85e-13 68.9
MS.gene050523.t1 MTR_2g085125 24.534 322 216 10 16 317 51 365 7.40e-13 69.3
MS.gene050523.t1 MTR_3g083130 26.263 297 156 11 54 325 44 302 2.21e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050523.t1 AT1G60710 60.597 335 126 4 13 344 7 338 2.18e-144 412
MS.gene050523.t1 AT1G60690 59.701 335 129 4 13 344 7 338 7.74e-144 410
MS.gene050523.t1 AT1G60750 57.658 333 123 4 13 344 8 323 5.80e-139 398
MS.gene050523.t1 AT1G60680 56.560 343 142 5 13 351 7 346 6.52e-139 398
MS.gene050523.t1 AT1G60730 57.612 335 136 4 13 344 7 338 3.90e-138 396
MS.gene050523.t1 AT1G60730 54.366 355 136 5 13 344 7 358 3.75e-133 384
MS.gene050523.t1 AT1G10810 55.425 341 146 4 13 350 7 344 3.09e-130 376
MS.gene050523.t1 AT1G10810 57.818 275 111 3 79 350 20 292 1.23e-110 324
MS.gene050523.t1 AT1G60680 63.551 214 76 2 13 225 7 219 1.73e-96 286
MS.gene050523.t1 AT1G10810 58.590 227 87 2 13 239 7 226 4.48e-90 271
MS.gene050523.t1 AT1G60730 54.286 140 63 1 13 152 7 145 3.85e-46 155
MS.gene050523.t1 AT1G04690 30.693 303 189 8 17 304 5 301 2.41e-32 124
MS.gene050523.t1 AT1G06690 29.179 329 197 11 16 320 49 365 1.07e-28 114
MS.gene050523.t1 AT5G53580 28.659 328 186 13 23 321 45 353 9.17e-28 112
MS.gene050523.t1 AT4G33670 26.923 312 197 10 18 316 9 302 1.69e-24 102
MS.gene050523.t1 AT1G04420 26.801 347 200 13 18 316 61 401 1.13e-19 89.7
MS.gene050523.t1 AT2G21260 26.807 332 167 13 16 316 3 289 4.42e-16 78.2
MS.gene050523.t1 AT2G21250 26.727 333 166 13 16 316 3 289 7.75e-15 74.7
MS.gene050523.t1 AT2G21260 27.632 228 118 7 114 316 16 221 2.30e-14 72.4
MS.gene050523.t1 AT2G37760 27.839 273 134 11 50 296 29 264 2.39e-12 67.0
MS.gene050523.t1 AT2G37760 27.839 273 134 11 50 296 29 264 2.39e-12 67.0
MS.gene050523.t1 AT2G37760 27.839 273 134 11 50 296 29 264 2.43e-12 67.0
MS.gene050523.t1 AT2G37760 27.839 273 134 11 50 296 29 264 3.93e-12 66.6
MS.gene050523.t1 AT2G37760 27.839 273 134 11 50 296 29 264 3.93e-12 66.6
MS.gene050523.t1 AT2G27680 23.571 280 187 8 19 279 52 323 4.66e-11 63.9

Find 87 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGACACTGCTGATGTTTA+TGG 0.130046 7.4:+2492210 MS.gene050523:CDS
CGATGGTGGGAATGAAATTT+TGG 0.194348 7.4:+2492236 MS.gene050523:CDS
ATCCAGGTGGCTACAAAATT+TGG 0.216306 7.4:+2492492 MS.gene050523:CDS
TCCCATACCACCGGCACTTC+TGG 0.235548 7.4:-2492520 None:intergenic
GTTGAGACCGTTGAAACTTT+TGG 0.258801 7.4:-2494673 None:intergenic
ACTTGGAACCCAAGGCTTTC+AGG 0.279174 7.4:+2491973 MS.gene050523:CDS
TGTGCTCTCCTTATTGTATC+AGG 0.290458 7.4:-2492980 None:intergenic
GATCCTCTTCCTGAAGAAAT+TGG 0.293230 7.4:+2492144 MS.gene050523:CDS
TAGGTTTCAAAATTCGGTTT+AGG 0.304608 7.4:+2492093 MS.gene050523:intron
AGGTTTCAAAATTCGGTTTA+GGG 0.317344 7.4:+2492094 MS.gene050523:intron
AACAACTAAGATTGAGAATC+TGG 0.331104 7.4:+2494507 MS.gene050523:CDS
ACGGAAATGCCAATTTCTTC+AGG 0.353338 7.4:-2492153 None:intergenic
CGAAGATGTGCCGAGCTTCA+TGG 0.363687 7.4:+2493358 MS.gene050523:CDS
ACTGAATGCATGCTTAATTA+CGG 0.364560 7.4:-2492172 None:intergenic
CCTTTACCAAGTGGACTATA+TGG 0.375897 7.4:-2493311 None:intergenic
TGATACAGAGAGCTTGGTAT+TGG 0.386936 7.4:+2493281 MS.gene050523:intron
AAAATTCGGTTTAGGGTGTA+TGG 0.387624 7.4:+2492101 MS.gene050523:CDS
GAGGGAAAAGTTAAGTATAT+TGG 0.391690 7.4:+2492941 MS.gene050523:CDS
AAGGATGTTGTGCCTATTCC+TGG 0.394764 7.4:+2493818 MS.gene050523:CDS
GGTAGGTGAACTTAAGAAAC+TGG 0.404929 7.4:+2492913 MS.gene050523:intron
ATCCAGAAGTGCCGGTGGTA+TGG 0.406125 7.4:+2492518 MS.gene050523:CDS
AAGCCAGCCCTGATACAATA+AGG 0.414769 7.4:+2492972 MS.gene050523:CDS
CCGCTTCCAAGCTGAGAACT+TGG 0.415734 7.4:+2493697 MS.gene050523:CDS
CTACCTGCTATATCATCTTC+AGG 0.426229 7.4:-2494598 None:intergenic
GCACAACATCCTTGCCTTGT+TGG 0.434088 7.4:-2493808 None:intergenic
TCTATTTGTAAAGCTGTGAT+AGG 0.434957 7.4:-2493013 None:intergenic
TACAAATAGAGTGGTCTCTC+TGG 0.437707 7.4:+2493026 MS.gene050523:CDS
TCCTTAACTGTATCCTCAAT+AGG 0.446629 7.4:-2492651 None:intergenic
TCTCCTTATTGTATCAGGGC+TGG 0.459103 7.4:-2492975 None:intergenic
AGGCGTGTTAGCAAACTTCC+AGG 0.460821 7.4:-2494650 None:intergenic
CCATATAGTCCACTTGGTAA+AGG 0.481916 7.4:+2493311 MS.gene050523:CDS
ATGCCAATTTCTTCAGGAAG+AGG 0.491719 7.4:-2492147 None:intergenic
TCCAGAAGTGCCGGTGGTAT+GGG 0.494504 7.4:+2492519 MS.gene050523:CDS
CAAGTTCTCAGCTTGGAAGC+GGG 0.500791 7.4:-2493696 None:intergenic
CTAATTCCTCATGTCACACT+TGG 0.500882 7.4:+2491956 MS.gene050523:CDS
ATTAAGCATGCATTCAGTAA+AGG 0.507501 7.4:+2492177 MS.gene050523:CDS
AGAACAAGGTTATATATGAT+AGG 0.508380 7.4:+2493723 MS.gene050523:CDS
ACGAGATAGTTCCTCTCTGC+AGG 0.515403 7.4:+2493065 MS.gene050523:CDS
CGATACAACTGTGCCTATTG+AGG 0.516697 7.4:+2492638 MS.gene050523:CDS
CCAAGTTCTCAGCTTGGAAG+CGG 0.517525 7.4:-2493697 None:intergenic
TCTTGACCAAGTTCTCAGCT+TGG 0.528939 7.4:-2493703 None:intergenic
GTGCTCTCCTTATTGTATCA+GGG 0.530977 7.4:-2492979 None:intergenic
ACCTTTGATTCCCATACCAC+CGG 0.535653 7.4:-2492529 None:intergenic
ATGGAATGGATAGTTTATCC+TGG 0.545904 7.4:+2494632 MS.gene050523:CDS
CTGCTCAGTTAGCATTAGCA+TGG 0.546251 7.4:+2493780 MS.gene050523:CDS
GGGTGTATGGCCCTCAGTGG+AGG 0.554437 7.4:+2492114 MS.gene050523:CDS
CACGCCTCCAAAAGTTTCAA+CGG 0.555051 7.4:+2494666 MS.gene050523:CDS
ACTTAAGAAACTGGTGGACG+AGG 0.557105 7.4:+2492922 MS.gene050523:CDS
TTGTGTTTGTGTTTGTGTTG+CGG 0.560555 7.4:-2491927 None:intergenic
TGATGATACCTGAAAGCCTT+GGG 0.564484 7.4:-2491981 None:intergenic
GCCGGTGGTATGGGAATCAA+AGG 0.566837 7.4:+2492528 MS.gene050523:CDS
CATGTCACACTTGGAACCCA+AGG 0.578508 7.4:+2491965 MS.gene050523:CDS
GTTCCTGAAGATGATATAGC+AGG 0.578538 7.4:+2494595 MS.gene050523:CDS
TATGGGAATCAAAGGTTCAC+CGG 0.579317 7.4:+2492536 MS.gene050523:CDS
ACTATCAGAAGAGGACATGC+GGG 0.584092 7.4:+2494558 MS.gene050523:CDS
GAGAATCTGGATCAAAACCT+TGG 0.589578 7.4:+2494520 MS.gene050523:CDS
CAGCTTGAACGCACATACTC+CGG 0.590970 7.4:-2492555 None:intergenic
TTTGGTATATCCAGAAGTGC+CGG 0.592216 7.4:+2492510 MS.gene050523:CDS
TGAGAACTTGGTCAAGAACA+AGG 0.594858 7.4:+2493709 MS.gene050523:CDS
AGCAGTGAAACTATCAGAAG+AGG 0.596544 7.4:+2494549 MS.gene050523:CDS
ACTTCCCAGAGAAAAGATCC+AGG 0.597330 7.4:+2492476 MS.gene050523:CDS
ATCATTATAACCTCCACTGA+GGG 0.598759 7.4:-2492124 None:intergenic
TAGTAGATACTACAATGGAA+TGG 0.602882 7.4:+2494618 MS.gene050523:CDS
ATGGGTACTCCAACAAGGCA+AGG 0.611881 7.4:+2493799 MS.gene050523:CDS
GATGTTTATGGACTCGATGG+TGG 0.612735 7.4:+2492222 MS.gene050523:CDS
ATTGTACCATATAGTCCACT+TGG 0.612810 7.4:+2493305 MS.gene050523:CDS
AAGTTCTCAGCTTGGAAGCG+GGG 0.613856 7.4:-2493695 None:intergenic
AAATGCTATACCATGAAGCT+CGG 0.620782 7.4:-2493368 None:intergenic
ATGTTTATGGACTCGATGGT+GGG 0.621527 7.4:+2492223 MS.gene050523:CDS
GAAAGTCTTAGCAAGAAGCA+TGG 0.623738 7.4:+2493749 MS.gene050523:CDS
AACTATCAGAAGAGGACATG+CGG 0.624051 7.4:+2494557 MS.gene050523:CDS
CTTAAGAAACTGGTGGACGA+GGG 0.626596 7.4:+2492923 MS.gene050523:CDS
TCTCTGGACTCGCGACATTG+AGG 0.626799 7.4:+2493042 MS.gene050523:CDS
GCTGATGTTTATGGACTCGA+TGG 0.627574 7.4:+2492219 MS.gene050523:CDS
TGCTCAGTTAGCATTAGCAT+GGG 0.633628 7.4:+2493781 MS.gene050523:CDS
GTGATGATACCTGAAAGCCT+TGG 0.646270 7.4:-2491982 None:intergenic
TCACAGCTTTACAAATAGAG+TGG 0.653310 7.4:+2493017 MS.gene050523:CDS
TTAGGGTGTATGGCCCTCAG+TGG 0.653469 7.4:+2492111 MS.gene050523:CDS
AGGTGAACTTAAGAAACTGG+TGG 0.677931 7.4:+2492916 MS.gene050523:CDS
GTTTCACTGCTAATGCACCA+AGG 0.681712 7.4:-2494537 None:intergenic
TGGGTTCCAAGTGTGACATG+AGG 0.682273 7.4:-2491962 None:intergenic
GCAGGTAGTAGATACTACAA+TGG 0.684368 7.4:+2494613 MS.gene050523:CDS
TTAGCATGGGTACTCCAACA+AGG 0.686154 7.4:+2493794 MS.gene050523:CDS
GGTATATCCAGAAGTGCCGG+TGG 0.696646 7.4:+2492513 MS.gene050523:CDS
GATCATTATAACCTCCACTG+AGG 0.735023 7.4:-2492125 None:intergenic
ACTCGAACTAACCTGCAGAG+AGG 0.749098 7.4:-2493076 None:intergenic
TCCCAGAGAAAAGATCCAGG+TGG 0.757635 7.4:+2492479 MS.gene050523:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTGTTTTTATTATAGTT+AGG - chr7.4:2494109-2494128 None:intergenic 10.0%
!!! TTTTATTCTTGAAAATATTA+TGG + chr7.4:2494466-2494485 MS.gene050523:intron 10.0%
!! AAAAAGCTGAAAATAAAATT+AGG - chr7.4:2494448-2494467 None:intergenic 15.0%
!! AAAGAAAAAAAAACTCAAAT+TGG - chr7.4:2492416-2492435 None:intergenic 15.0%
!!! ACAACATAAACTTTTTAAAA+AGG - chr7.4:2493640-2493659 None:intergenic 15.0%
!!! ATAAACTTTTTAAAAAGGAA+AGG - chr7.4:2493635-2493654 None:intergenic 15.0%
!!! ATATCTTTTATGTTCTAAAT+TGG + chr7.4:2492368-2492387 MS.gene050523:intron 15.0%
!!! TCTATTGTTGTTTTTATTTT+AGG + chr7.4:2492074-2492093 MS.gene050523:intron 15.0%
!!! TTATTTTAGGTTTCAAAATT+CGG + chr7.4:2492087-2492106 MS.gene050523:intron 15.0%
!! ATGTAACGTTATAAATCATA+CGG + chr7.4:2494252-2494271 MS.gene050523:intron 20.0%
!! CTTGATCATGAATTAAATAT+TGG + chr7.4:2493477-2493496 MS.gene050523:intron 20.0%
!! TAAAAATTTAGAAGAACCTT+TGG - chr7.4:2494383-2494402 None:intergenic 20.0%
!! TAACAAGTTTATTGTGTTAT+AGG + chr7.4:2492892-2492911 MS.gene050523:intron 20.0%
!! TAACAATTTATCACATAGTT+TGG + chr7.4:2494150-2494169 MS.gene050523:intron 20.0%
!! TATAGAGAGAAGAATATAAA+TGG - chr7.4:2492035-2492054 None:intergenic 20.0%
!! TTAATATTTACTCATTTGTC+CGG - chr7.4:2492340-2492359 None:intergenic 20.0%
!!! ATTCAAGTTTGAAGATTATT+TGG + chr7.4:2492847-2492866 MS.gene050523:intron 20.0%
!!! TCTAACAAAAGTGTATTTTT+TGG - chr7.4:2494078-2494097 None:intergenic 20.0%
!!! TTTATGTTCTAAATTGGATA+CGG + chr7.4:2492374-2492393 MS.gene050523:intron 20.0%
! AAGCTGAAAATAAAATTAGG+TGG - chr7.4:2494445-2494464 None:intergenic 25.0%
! AAGTTTATTGTGTTATAGGT+AGG + chr7.4:2492896-2492915 MS.gene050523:intron 25.0%
! AGAACAAGGTTATATATGAT+AGG + chr7.4:2493723-2493742 MS.gene050523:CDS 25.0%
! ATGTCTTAACAGTAATTCTA+TGG - chr7.4:2493429-2493448 None:intergenic 25.0%
! CAACACAATCAAATAATGAA+AGG - chr7.4:2492440-2492459 None:intergenic 25.0%
! CATGTGAGAAAAAACAAATA+AGG - chr7.4:2493579-2493598 None:intergenic 25.0%
! CATGTTAATTCTTACTGATA+TGG + chr7.4:2492738-2492757 MS.gene050523:intron 25.0%
! CTCTTAATATATGAAATGCA+AGG - chr7.4:2494333-2494352 None:intergenic 25.0%
! GATCAATGCTATTACATAAT+TGG - chr7.4:2493453-2493472 None:intergenic 25.0%
! TAAACTTGAGTAATGTTACA+GGG + chr7.4:2493545-2493564 MS.gene050523:intron 25.0%
! TATCACATAGTTTGGTTAAT+TGG + chr7.4:2494158-2494177 MS.gene050523:intron 25.0%
! TGTTCAGATTCATAAATAAG+AGG - chr7.4:2493948-2493967 None:intergenic 25.0%
! TTAAACTTGAGTAATGTTAC+AGG + chr7.4:2493544-2493563 MS.gene050523:intron 25.0%
! TTCTTAATTGTTAGGATACA+TGG - chr7.4:2493984-2494003 None:intergenic 25.0%
!!! ATTATTTGATTGTGTTGACT+AGG + chr7.4:2492443-2492462 MS.gene050523:intron 25.0%
AAAACCAGTTTATAGAGGTA+GGG - chr7.4:2492807-2492826 None:intergenic 30.0%
AAACTTGAGTAATGTTACAG+GGG + chr7.4:2493546-2493565 MS.gene050523:intron 30.0%
AACAACTAAGATTGAGAATC+TGG + chr7.4:2494507-2494526 MS.gene050523:CDS 30.0%
ACTGAATGCATGCTTAATTA+CGG - chr7.4:2492175-2492194 None:intergenic 30.0%
AGGTTTCAAAATTCGGTTTA+GGG + chr7.4:2492094-2492113 MS.gene050523:intron 30.0%
ATGGTGCATTCTTAATTGTT+AGG - chr7.4:2493992-2494011 None:intergenic 30.0%
ATTAAGCATGCATTCAGTAA+AGG + chr7.4:2492177-2492196 MS.gene050523:CDS 30.0%
CTAATCATAGCTACAAGAAT+CGG + chr7.4:2492278-2492297 MS.gene050523:intron 30.0%
GAGAGTCCCAAATTATAAAT+GGG + chr7.4:2492775-2492794 MS.gene050523:intron 30.0%
GAGGGAAAAGTTAAGTATAT+TGG + chr7.4:2492941-2492960 MS.gene050523:CDS 30.0%
GAGTCTCCCATTTATAATTT+GGG - chr7.4:2492784-2492803 None:intergenic 30.0%
TAGGTTTCAAAATTCGGTTT+AGG + chr7.4:2492093-2492112 MS.gene050523:intron 30.0%
TAGTAGATACTACAATGGAA+TGG + chr7.4:2494618-2494637 MS.gene050523:CDS 30.0%
TCTATTTGTAAAGCTGTGAT+AGG - chr7.4:2493016-2493035 None:intergenic 30.0%
TGAGAGTCCCAAATTATAAA+TGG + chr7.4:2492774-2492793 MS.gene050523:intron 30.0%
TTGAACAACTTTCATTGATG+AGG + chr7.4:2493162-2493181 MS.gene050523:intron 30.0%
! ACAACGATAGAAGAAGTATA+TGG - chr7.4:2494011-2494030 None:intergenic 30.0%
! CTCATATTTCTGATACTGTT+AGG - chr7.4:2493921-2493940 None:intergenic 30.0%
!!! CTCTATAAACTGGTTTTGTA+GGG + chr7.4:2492810-2492829 MS.gene050523:intron 30.0%
!!! GAATGAAATTTTGGTTGGAA+AGG + chr7.4:2492245-2492264 MS.gene050523:CDS 30.0%
AAACCAGTTTATAGAGGTAG+GGG - chr7.4:2492806-2492825 None:intergenic 35.0%
AAATGCTATACCATGAAGCT+CGG - chr7.4:2493371-2493390 None:intergenic 35.0%
ATCATTATAACCTCCACTGA+GGG - chr7.4:2492127-2492146 None:intergenic 35.0%
ATGACTCATATTCACCAACA+AGG - chr7.4:2494297-2494316 None:intergenic 35.0%
ATGGAATGGATAGTTTATCC+TGG + chr7.4:2494632-2494651 MS.gene050523:CDS 35.0%
ATTACAAGTTTACCCCTTGT+TGG + chr7.4:2494280-2494299 MS.gene050523:intron 35.0%
ATTGTACCATATAGTCCACT+TGG + chr7.4:2493305-2493324 MS.gene050523:CDS 35.0%
CAAAACCAGTTTATAGAGGT+AGG - chr7.4:2492808-2492827 None:intergenic 35.0%
CCTACAAAACCAGTTTATAG+AGG - chr7.4:2492812-2492831 None:intergenic 35.0%
GCAAAAAAACCTTTACCAAG+TGG - chr7.4:2493323-2493342 None:intergenic 35.0%
GGAGTCTCCCATTTATAATT+TGG - chr7.4:2492785-2492804 None:intergenic 35.0%
GTTACTCAGGGTTAAAGAAA+TGG + chr7.4:2493186-2493205 MS.gene050523:intron 35.0%
TACAACAATCACTCTGTTGT+CGG - chr7.4:2494194-2494213 None:intergenic 35.0%
TCACAGCTTTACAAATAGAG+TGG + chr7.4:2493017-2493036 MS.gene050523:CDS 35.0%
TCCTTAACTGTATCCTCAAT+AGG - chr7.4:2492654-2492673 None:intergenic 35.0%
TGACTCATATTCACCAACAA+GGG - chr7.4:2494296-2494315 None:intergenic 35.0%
TTGTGTTTGTGTTTGTGTTG+CGG - chr7.4:2491930-2491949 None:intergenic 35.0%
TTTGACACTGCTGATGTTTA+TGG + chr7.4:2492210-2492229 MS.gene050523:CDS 35.0%
TTTGATTGCAGTCTCTTAAC+TGG + chr7.4:2493892-2493911 MS.gene050523:intron 35.0%
! AAAATTCGGTTTAGGGTGTA+TGG + chr7.4:2492101-2492120 MS.gene050523:CDS 35.0%
! TATGGACTTCTTTTGTTCTC+AGG + chr7.4:2494484-2494503 MS.gene050523:intron 35.0%
! TGCATATTTTGTAACTCACC+AGG - chr7.4:2493839-2493858 None:intergenic 35.0%
! TTTTGTAACTCACCAGGAAT+AGG - chr7.4:2493833-2493852 None:intergenic 35.0%
! TTTTGTTGATACAGAGAGCT+TGG + chr7.4:2493275-2493294 MS.gene050523:intron 35.0%
!!! AAAGGTTTTTTTGCTGGCAA+AGG + chr7.4:2493329-2493348 MS.gene050523:CDS 35.0%
!!! CCTCTATAAACTGGTTTTGT+AGG + chr7.4:2492809-2492828 MS.gene050523:intron 35.0%
!!! CTTGGTAAAGGTTTTTTTGC+TGG + chr7.4:2493323-2493342 MS.gene050523:CDS 35.0%
AACTATCAGAAGAGGACATG+CGG + chr7.4:2494557-2494576 MS.gene050523:CDS 40.0%
ACGGAAATGCCAATTTCTTC+AGG - chr7.4:2492156-2492175 None:intergenic 40.0%
AGCAGTGAAACTATCAGAAG+AGG + chr7.4:2494549-2494568 MS.gene050523:CDS 40.0%
AGGTGAACTTAAGAAACTGG+TGG + chr7.4:2492916-2492935 MS.gene050523:CDS 40.0%
ATCATAGCTACAAGAATCGG+AGG + chr7.4:2492281-2492300 MS.gene050523:intron 40.0%
ATCCAGGTGGCTACAAAATT+TGG + chr7.4:2492492-2492511 MS.gene050523:CDS 40.0%
ATGCCAATTTCTTCAGGAAG+AGG - chr7.4:2492150-2492169 None:intergenic 40.0%
ATGTTTATGGACTCGATGGT+GGG + chr7.4:2492223-2492242 MS.gene050523:CDS 40.0%
CATTGATGAGGAGTTACTCA+GGG + chr7.4:2493174-2493193 MS.gene050523:intron 40.0%
CCATATAGTCCACTTGGTAA+AGG + chr7.4:2493311-2493330 MS.gene050523:CDS 40.0%
CTAATTCCTCATGTCACACT+TGG + chr7.4:2491956-2491975 MS.gene050523:CDS 40.0%
CTACCTGCTATATCATCTTC+AGG - chr7.4:2494601-2494620 None:intergenic 40.0%
CTTATCCTGTGAACTTAGAG+AGG - chr7.4:2493103-2493122 None:intergenic 40.0%
GAAAGTCTTAGCAAGAAGCA+TGG + chr7.4:2493749-2493768 MS.gene050523:CDS 40.0%
GAAATGGAACTGATTGCTCT+TGG + chr7.4:2493202-2493221 MS.gene050523:intron 40.0%
GACTCATATTCACCAACAAG+GGG - chr7.4:2494295-2494314 None:intergenic 40.0%
GAGAATCTGGATCAAAACCT+TGG + chr7.4:2494520-2494539 MS.gene050523:CDS 40.0%
GATCATTATAACCTCCACTG+AGG - chr7.4:2492128-2492147 None:intergenic 40.0%
GATCCTCTTCCTGAAGAAAT+TGG + chr7.4:2492144-2492163 MS.gene050523:CDS 40.0%
GCAGGTAGTAGATACTACAA+TGG + chr7.4:2494613-2494632 MS.gene050523:CDS 40.0%
GCCTATTGAGGATACAGTTA+AGG + chr7.4:2492650-2492669 MS.gene050523:intron 40.0%
GGTAGGTGAACTTAAGAAAC+TGG + chr7.4:2492913-2492932 MS.gene050523:intron 40.0%
GTACTCAGGTTACTAACCAA+AGG + chr7.4:2494364-2494383 MS.gene050523:intron 40.0%
GTGCTCTCCTTATTGTATCA+GGG - chr7.4:2492982-2493001 None:intergenic 40.0%
GTTCCTGAAGATGATATAGC+AGG + chr7.4:2494595-2494614 MS.gene050523:CDS 40.0%
TACAAATAGAGTGGTCTCTC+TGG + chr7.4:2493026-2493045 MS.gene050523:CDS 40.0%
TATGGGAATCAAAGGTTCAC+CGG + chr7.4:2492536-2492555 MS.gene050523:CDS 40.0%
TCATTGATGAGGAGTTACTC+AGG + chr7.4:2493173-2493192 MS.gene050523:intron 40.0%
TGAGAACTTGGTCAAGAACA+AGG + chr7.4:2493709-2493728 MS.gene050523:CDS 40.0%
TGATACAGAGAGCTTGGTAT+TGG + chr7.4:2493281-2493300 MS.gene050523:intron 40.0%
TGATGATACCTGAAAGCCTT+GGG - chr7.4:2491984-2492003 None:intergenic 40.0%
TGCTCAGTTAGCATTAGCAT+GGG + chr7.4:2493781-2493800 MS.gene050523:CDS 40.0%
TGTGCTCTCCTTATTGTATC+AGG - chr7.4:2492983-2493002 None:intergenic 40.0%
! GTTGAGACCGTTGAAACTTT+TGG - chr7.4:2494676-2494695 None:intergenic 40.0%
! TACCAAATTTTGTAGCCACC+TGG - chr7.4:2492497-2492516 None:intergenic 40.0%
! TTAGGTGGAAAGCATATGCA+TGG - chr7.4:2494430-2494449 None:intergenic 40.0%
! TTTGGTATATCCAGAAGTGC+CGG + chr7.4:2492510-2492529 MS.gene050523:CDS 40.0%
!! CCTTTACCAAGTGGACTATA+TGG - chr7.4:2493314-2493333 None:intergenic 40.0%
!! GGTGGGAATGAAATTTTGGT+TGG + chr7.4:2492240-2492259 MS.gene050523:CDS 40.0%
!!! CGATGGTGGGAATGAAATTT+TGG + chr7.4:2492236-2492255 MS.gene050523:CDS 40.0%
AAGCCAGCCCTGATACAATA+AGG + chr7.4:2492972-2492991 MS.gene050523:CDS 45.0%
AAGGATGTTGTGCCTATTCC+TGG + chr7.4:2493818-2493837 MS.gene050523:CDS 45.0%
ACCTTTGATTCCCATACCAC+CGG - chr7.4:2492532-2492551 None:intergenic 45.0%
ACTATCAGAAGAGGACATGC+GGG + chr7.4:2494558-2494577 MS.gene050523:CDS 45.0%
ACTCCCCTACCTCTATAAAC+TGG + chr7.4:2492800-2492819 MS.gene050523:intron 45.0%
ACTTCCCAGAGAAAAGATCC+AGG + chr7.4:2492476-2492495 MS.gene050523:CDS 45.0%
AGCTACAAGAATCGGAGGTT+AGG + chr7.4:2492286-2492305 MS.gene050523:intron 45.0%
AGGTTAGGTAGTTTCCCTAG+AGG + chr7.4:2492301-2492320 MS.gene050523:intron 45.0%
CACGCCTCCAAAAGTTTCAA+CGG + chr7.4:2494666-2494685 MS.gene050523:CDS 45.0%
CATTTGTCCGGATTTGAACC+AGG - chr7.4:2492328-2492347 None:intergenic 45.0%
CGATACAACTGTGCCTATTG+AGG + chr7.4:2492638-2492657 MS.gene050523:CDS 45.0%
CTGCTCAGTTAGCATTAGCA+TGG + chr7.4:2493780-2493799 MS.gene050523:CDS 45.0%
GAGTGTCATCTGATGTACTC+AGG + chr7.4:2494350-2494369 MS.gene050523:intron 45.0%
GAGTTCCTCTCTAAGTTCAC+AGG + chr7.4:2493095-2493114 MS.gene050523:intron 45.0%
GATGTTTATGGACTCGATGG+TGG + chr7.4:2492222-2492241 MS.gene050523:CDS 45.0%
GATTTGAACCAGGACCTCTA+GGG - chr7.4:2492318-2492337 None:intergenic 45.0%
GCTGATGTTTATGGACTCGA+TGG + chr7.4:2492219-2492238 MS.gene050523:CDS 45.0%
GTGATGATACCTGAAAGCCT+TGG - chr7.4:2491985-2492004 None:intergenic 45.0%
GTTTCACTGCTAATGCACCA+AGG - chr7.4:2494540-2494559 None:intergenic 45.0%
TAGAGGTCCTGGTTCAAATC+CGG + chr7.4:2492318-2492337 MS.gene050523:intron 45.0%
TCTCCTTATTGTATCAGGGC+TGG - chr7.4:2492978-2492997 None:intergenic 45.0%
TCTTGACCAAGTTCTCAGCT+TGG - chr7.4:2493706-2493725 None:intergenic 45.0%
TTAGCATGGGTACTCCAACA+AGG + chr7.4:2493794-2493813 MS.gene050523:CDS 45.0%
! ACTTAAGAAACTGGTGGACG+AGG + chr7.4:2492922-2492941 MS.gene050523:CDS 45.0%
! CTTAAGAAACTGGTGGACGA+GGG + chr7.4:2492923-2492942 MS.gene050523:CDS 45.0%
! GAGACCGTTGAAACTTTTGG+AGG - chr7.4:2494673-2494692 None:intergenic 45.0%
AAGTTCTCAGCTTGGAAGCG+GGG - chr7.4:2493698-2493717 None:intergenic 50.0%
ACGAGATAGTTCCTCTCTGC+AGG + chr7.4:2493065-2493084 MS.gene050523:CDS 50.0%
ACTCGAACTAACCTGCAGAG+AGG - chr7.4:2493079-2493098 None:intergenic 50.0%
ACTTGGAACCCAAGGCTTTC+AGG + chr7.4:2491973-2491992 MS.gene050523:CDS 50.0%
AGGCGTGTTAGCAAACTTCC+AGG - chr7.4:2494653-2494672 None:intergenic 50.0%
ATGGGTACTCCAACAAGGCA+AGG + chr7.4:2493799-2493818 MS.gene050523:CDS 50.0%
CAAGTTCTCAGCTTGGAAGC+GGG - chr7.4:2493699-2493718 None:intergenic 50.0%
CAGCTTGAACGCACATACTC+CGG - chr7.4:2492558-2492577 None:intergenic 50.0%
CATGTCACACTTGGAACCCA+AGG + chr7.4:2491965-2491984 MS.gene050523:CDS 50.0%
CCAAGTTCTCAGCTTGGAAG+CGG - chr7.4:2493700-2493719 None:intergenic 50.0%
GCACAACATCCTTGCCTTGT+TGG - chr7.4:2493811-2493830 None:intergenic 50.0%
GGATTTGAACCAGGACCTCT+AGG - chr7.4:2492319-2492338 None:intergenic 50.0%
TCCCAGAGAAAAGATCCAGG+TGG + chr7.4:2492479-2492498 MS.gene050523:CDS 50.0%
TGGGTTCCAAGTGTGACATG+AGG - chr7.4:2491965-2491984 None:intergenic 50.0%
! AGCCACCTGGATCTTTTCTC+TGG - chr7.4:2492484-2492503 None:intergenic 50.0%
! GCCACCTGGATCTTTTCTCT+GGG - chr7.4:2492483-2492502 None:intergenic 50.0%
CCGCTTCCAAGCTGAGAACT+TGG + chr7.4:2493697-2493716 MS.gene050523:CDS 55.0%
CGAAGATGTGCCGAGCTTCA+TGG + chr7.4:2493358-2493377 MS.gene050523:CDS 55.0%
GCCGGTGGTATGGGAATCAA+AGG + chr7.4:2492528-2492547 MS.gene050523:CDS 55.0%
GGTAGTTTCCCTAGAGGTCC+TGG + chr7.4:2492307-2492326 MS.gene050523:intron 55.0%
TCTCTGGACTCGCGACATTG+AGG + chr7.4:2493042-2493061 MS.gene050523:CDS 55.0%
TTAGGGTGTATGGCCCTCAG+TGG + chr7.4:2492111-2492130 MS.gene050523:CDS 55.0%
!! ATCCAGAAGTGCCGGTGGTA+TGG + chr7.4:2492518-2492537 MS.gene050523:CDS 55.0%
!! GGTATATCCAGAAGTGCCGG+TGG + chr7.4:2492513-2492532 MS.gene050523:CDS 55.0%
!! TCCAGAAGTGCCGGTGGTAT+GGG + chr7.4:2492519-2492538 MS.gene050523:CDS 55.0%
TCCCATACCACCGGCACTTC+TGG - chr7.4:2492523-2492542 None:intergenic 60.0%
GGGTGTATGGCCCTCAGTGG+AGG + chr7.4:2492114-2492133 MS.gene050523:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 2491923 2494699 2491923 ID=MS.gene050523
chr7.4 mRNA 2491923 2494699 2491923 ID=MS.gene050523.t1;Parent=MS.gene050523
chr7.4 exon 2491923 2491994 2491923 ID=MS.gene050523.t1.exon1;Parent=MS.gene050523.t1
chr7.4 CDS 2491923 2491994 2491923 ID=cds.MS.gene050523.t1;Parent=MS.gene050523.t1
chr7.4 exon 2492096 2492266 2492096 ID=MS.gene050523.t1.exon2;Parent=MS.gene050523.t1
chr7.4 CDS 2492096 2492266 2492096 ID=cds.MS.gene050523.t1;Parent=MS.gene050523.t1
chr7.4 exon 2492465 2492665 2492465 ID=MS.gene050523.t1.exon3;Parent=MS.gene050523.t1
chr7.4 CDS 2492465 2492665 2492465 ID=cds.MS.gene050523.t1;Parent=MS.gene050523.t1
chr7.4 exon 2492914 2493086 2492914 ID=MS.gene050523.t1.exon4;Parent=MS.gene050523.t1
chr7.4 CDS 2492914 2493086 2492914 ID=cds.MS.gene050523.t1;Parent=MS.gene050523.t1
chr7.4 exon 2493289 2493379 2493289 ID=MS.gene050523.t1.exon5;Parent=MS.gene050523.t1
chr7.4 CDS 2493289 2493379 2493289 ID=cds.MS.gene050523.t1;Parent=MS.gene050523.t1
chr7.4 exon 2493686 2493839 2493686 ID=MS.gene050523.t1.exon6;Parent=MS.gene050523.t1
chr7.4 CDS 2493686 2493839 2493686 ID=cds.MS.gene050523.t1;Parent=MS.gene050523.t1
chr7.4 exon 2494506 2494699 2494506 ID=MS.gene050523.t1.exon7;Parent=MS.gene050523.t1
chr7.4 CDS 2494506 2494699 2494506 ID=cds.MS.gene050523.t1;Parent=MS.gene050523.t1
Gene Sequence

>MS.gene050523

ATGACCGCAACACAAACACAAACACAAACTGAACTAATTCCTCATGTCACACTTGGAACCCAAGGCTTTCAGGTATCATCACTCACTTCTACACTTACAGATACAAATGCCATTTATATTCTTCTCTCTATACTATACTAATTTACGACTATCTATTGTTGTTTTTATTTTAGGTTTCAAAATTCGGTTTAGGGTGTATGGCCCTCAGTGGAGGTTATAATGATCCTCTTCCTGAAGAAATTGGCATTTCCGTAATTAAGCATGCATTCAGTAAAGGAATCACTTTTTTTGACACTGCTGATGTTTATGGACTCGATGGTGGGAATGAAATTTTGGTTGGAAAGGTATATACATACTAATCATAGCTACAAGAATCGGAGGTTAGGTAGTTTCCCTAGAGGTCCTGGTTCAAATCCGGACAAATGAGTAAATATTAATCTCAAGAATATCTTTTATGTTCTAAATTGGATACGGAAATTGAAACTTCATGCCAATTTGAGTTTTTTTTTCTTTTCCTTTCATTATTTGATTGTGTTGACTAGGCTTTAAAGCAACTTCCCAGAGAAAAGATCCAGGTGGCTACAAAATTTGGTATATCCAGAAGTGCCGGTGGTATGGGAATCAAAGGTTCACCGGAGTATGTGCGTTCAAGCTGCGAAGCTAGCTTGAAACGTCTCGATGTTGAATACATTGATCTCTATTATCAGCACAGAGTCGATACAACTGTGCCTATTGAGGATACAGTTAAGGATATTTCTTCTTATGTAAAACTAGTATTTGATTTGAGATCAGAACACGACTACACGTTACATATACATGTTAATTCTTACTGATATGGTTAGATTATTTGTTGAGAGTCCCAAATTATAAATGGGAGACTCCCCTACCTCTATAAACTGGTTTTGTAGGGTTGAGTTATTGACGATTCAAGTTTGAAGATTATTTGGCTTATTTCACTAGATGTGTTGTTAACAAGTTTATTGTGTTATAGGTAGGTGAACTTAAGAAACTGGTGGACGAGGGAAAAGTTAAGTATATTGGACTATCTGAAGCCAGCCCTGATACAATAAGGAGAGCACATGCTGTTCATCCTATCACAGCTTTACAAATAGAGTGGTCTCTCTGGACTCGCGACATTGAGGACGAGATAGTTCCTCTCTGCAGGTTAGTTCGAGTTCCTCTCTAAGTTCACAGGATAAGATTACAACACTCATGACTGTTTGTTCATTAAATAATAATTTGAACAACTTTCATTGATGAGGAGTTACTCAGGGTTAAAGAAATGGAACTGATTGCTCTTGGCTGTATTGAATTTTATGTTTGTGTTAAATGAGATTTTACTTATTTCAAGCTTTTGTTGATACAGAGAGCTTGGTATTGGAATTGTACCATATAGTCCACTTGGTAAAGGTTTTTTTGCTGGCAAAGGAGTTCTCGAAGATGTGCCGAGCTTCATGGTATAGCATTTTAGTATTTGAATTGAATGTGCGTTTCTCTTGCTTGCCATAGAATTACTGTTAAGACATGCCAATTATGTAATAGCATTGATCAAATCTTGATCATGAATTAAATATTGGTTGCTTTGTTGTCTTATTTTGTAAACAAACAAATGCTTGCTTTTTTAAACTTGAGTAATGTTACAGGGGATAGCATCCTTATTTGTTTTTTCTCACATGAATGATGTTTAAAGTCTTCTATAAAATTAAAGACCTTTCCTTTTTAAAAAGTTTATGTTGTTTTCTGATGATTATTTCGCTTATCAGACTTCTTTTCCCCGCTTCCAAGCTGAGAACTTGGTCAAGAACAAGGTTATATATGATAGGATTGAAAGTCTTAGCAAGAAGCATGGATGCACTACTGCTCAGTTAGCATTAGCATGGGTACTCCAACAAGGCAAGGATGTTGTGCCTATTCCTGGTGAGTTACAAAATATGCATATTTTTTCGAAAACAGTATTATTGTAAAAATCTTTGATTGCAGTCTCTTAACTGGTATCCTAACAGTATCAGAAATATGAGTTTTCCTCTTATTTATGAATCTGAACAATTAAGAGAAGAACCATGTATCCTAACAATTAAGAATGCACCATATACTTCTTCTATCGTTGTGTACTGATCAATTAAGAGAAGAACTATGTACACTCATCTTTACACCAAAAAATACACTTTTGTTAGATACGAAAACCTAACTATAATAAAAACAAATAAATAAATGCACACAAGAACATTAACAATTTATCACATAGTTTGGTTAATTGGTCTTACGTCTCCGACAACAGAGTGATTGTTGTAGTTCTTCGATTATGCAATACTTCAGATTATAGAGTACAATGTAACGTTATAAATCATACGGTACAGATTACAAGTTTACCCCTTGTTGGTGAATATGAGTCATATTCAACAACTTTCCTTGCATTTCATATATTAAGAGTGTCATCTGATGTACTCAGGTTACTAACCAAAGGTTCTTCTAAATTTTTAAGTGCTGATAATGTACTATACAAGCCATGCATATGCTTTCCACCTAATTTTATTTTCAGCTTTTTTTATTCTTGAAAATATTATGGACTTCTTTTGTTCTCAGGAACAACTAAGATTGAGAATCTGGATCAAAACCTTGGTGCATTAGCAGTGAAACTATCAGAAGAGGACATGCGGGAAATTTCTGCTGCAGTTCCTGAAGATGATATAGCAGGTAGTAGATACTACAATGGAATGGATAGTTTATCCTGGAAGTTTGCTAACACGCCTCCAAAAGTTTCAACGGTCTCAACCTGA

Protein sequence

>MS.gene050523.t1

MTATQTQTQTELIPHVTLGTQGFQVSKFGLGCMALSGGYNDPLPEEIGISVIKHAFSKGITFFDTADVYGLDGGNEILVGKALKQLPREKIQVATKFGISRSAGGMGIKGSPEYVRSSCEASLKRLDVEYIDLYYQHRVDTTVPIEDTVGELKKLVDEGKVKYIGLSEASPDTIRRAHAVHPITALQIEWSLWTRDIEDEIVPLCRELGIGIVPYSPLGKGFFAGKGVLEDVPSFMTSFPRFQAENLVKNKVIYDRIESLSKKHGCTTAQLALAWVLQQGKDVVPIPGTTKIENLDQNLGALAVKLSEEDMREISAAVPEDDIAGSRYYNGMDSLSWKFANTPPKVSTVST