Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051309.t1 | XP_003612840.2 | 97.5 | 241 | 6 | 0 | 1 | 241 | 1 | 241 | 1.40E-109 | 406 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051309.t1 | P93654 | 66.9 | 245 | 73 | 2 | 1 | 241 | 1 | 241 | 1.5e-64 | 247.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051309.t1 | G7KCF3 | 97.5 | 241 | 6 | 0 | 1 | 241 | 1 | 241 | 9.9e-110 | 406.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013657 | MS.gene051309 | PPI |
| MS.gene051309 | MS.gene052932 | PPI |
| MS.gene051309 | MS.gene02663 | PPI |
| MS.gene051309 | MS.gene81965 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051309.t1 | MTR_5g029650 | 97.761 | 268 | 6 | 0 | 1 | 268 | 1 | 268 | 0.0 | 529 |
| MS.gene051309.t1 | MTR_8g066340 | 84.351 | 262 | 35 | 1 | 1 | 256 | 1 | 262 | 1.20e-149 | 419 |
| MS.gene051309.t1 | MTR_7g084590 | 56.015 | 266 | 115 | 1 | 1 | 266 | 1 | 264 | 3.84e-98 | 288 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051309.t1 | AT5G46860 | 76.154 | 260 | 54 | 2 | 1 | 256 | 1 | 256 | 5.81e-140 | 394 |
| MS.gene051309.t1 | AT4G17730 | 71.756 | 262 | 59 | 5 | 1 | 251 | 1 | 258 | 7.28e-113 | 325 |
| MS.gene051309.t1 | AT4G17730 | 74.390 | 246 | 52 | 3 | 1 | 236 | 1 | 245 | 9.68e-113 | 325 |
| MS.gene051309.t1 | AT5G16830 | 61.940 | 268 | 89 | 3 | 1 | 256 | 1 | 267 | 2.46e-112 | 325 |
| MS.gene051309.t1 | AT1G32270 | 54.132 | 242 | 90 | 5 | 26 | 252 | 106 | 341 | 6.37e-73 | 227 |
| MS.gene051309.t1 | AT1G32270 | 54.113 | 231 | 85 | 5 | 26 | 241 | 106 | 330 | 4.13e-67 | 214 |
Find 53 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTACTTATGGTGATATT+TGG | 0.212646 | 5.4:+19974656 | MS.gene051309:CDS |
| GCGGAGTTCGGGCGTGTCTT+TGG | 0.216250 | 5.4:-19972008 | None:intergenic |
| CGGAGTTCGGGCGTGTCTTT+GGG | 0.218987 | 5.4:-19972007 | None:intergenic |
| TTTAGCATCTGCTATCTTCT+TGG | 0.250765 | 5.4:-19972858 | None:intergenic |
| AGAACAGCATACCCTTCTTT+TGG | 0.265138 | 5.4:+19973140 | MS.gene051309:CDS |
| TATCTAGGCGTGCTTACTTA+TGG | 0.312349 | 5.4:+19974646 | MS.gene051309:intron |
| TCACAGTTTCTCGCGGAGTT+CGG | 0.312554 | 5.4:-19972020 | None:intergenic |
| GAAGATAGCAGATGCTAAAT+TGG | 0.316353 | 5.4:+19972862 | MS.gene051309:CDS |
| CACAGTTTCTCGCGGAGTTC+GGG | 0.319462 | 5.4:-19972019 | None:intergenic |
| GAAGGAAATCTCATTATCTA+AGG | 0.366910 | 5.4:-19973749 | None:intergenic |
| GGTCTTGTTTGCCGTTGATT+TGG | 0.369827 | 5.4:-19971901 | None:intergenic |
| CTCAATGATAGCTTCGTTGA+AGG | 0.380708 | 5.4:-19973767 | None:intergenic |
| TTACTTCACCTATCTGCTGC+TGG | 0.383436 | 5.4:-19973816 | None:intergenic |
| ACAAAGATCAAGCTCATCTT+TGG | 0.398928 | 5.4:+19974122 | MS.gene051309:CDS |
| GAGACTTCATATTGGACAAT+TGG | 0.402688 | 5.4:+19972136 | MS.gene051309:CDS |
| TCTCCGCCCTGCAGCTATAC+AGG | 0.431818 | 5.4:+19973084 | MS.gene051309:intron |
| GTTGATTTGGTTTCGCCGGC+CGG | 0.434566 | 5.4:-19971888 | None:intergenic |
| CACATGAAGTTCAGCCATCC+AGG | 0.452358 | 5.4:+19972972 | MS.gene051309:CDS |
| CAAGAAATCCAGCAGCAGAT+AGG | 0.473920 | 5.4:+19973808 | MS.gene051309:CDS |
| TGAACTTCATGTGGAACAAA+AGG | 0.477693 | 5.4:-19972962 | None:intergenic |
| CCGACTCAAGCGGTAGCTTC+CGG | 0.478496 | 5.4:+19971923 | MS.gene051309:CDS |
| CGGAAGCTACCGCTTGAGTC+GGG | 0.481262 | 5.4:-19971922 | None:intergenic |
| CATGAGCAAGGAGCAATGAT+TGG | 0.486298 | 5.4:+19973871 | MS.gene051309:CDS |
| TTCATGAGAATTCTCAATGT+TGG | 0.493350 | 5.4:-19974055 | None:intergenic |
| ACCTTCTGGATTCCAAAAGA+AGG | 0.493712 | 5.4:-19973152 | None:intergenic |
| TGCCGTTGATTTGGTTTCGC+CGG | 0.496080 | 5.4:-19971892 | None:intergenic |
| CAGAGACTCGTTAACACTCT+CGG | 0.506952 | 5.4:+19971980 | MS.gene051309:CDS |
| CACAAGACGAGACTTCATAT+TGG | 0.509468 | 5.4:+19972128 | MS.gene051309:CDS |
| GGAGTTCGGGCGTGTCTTTG+GGG | 0.514990 | 5.4:-19972006 | None:intergenic |
| TTCTCATGAAGCCACTGCCC+AGG | 0.520606 | 5.4:+19974068 | MS.gene051309:CDS |
| CCGGAAGCTACCGCTTGAGT+CGG | 0.529539 | 5.4:-19971923 | None:intergenic |
| ACAGCGTCTTGCAGCTGAGA+GGG | 0.536746 | 5.4:+19972925 | MS.gene051309:CDS |
| GTTAACGAGTCTCTGAAAAG+TGG | 0.541432 | 5.4:-19971972 | None:intergenic |
| GCTGTACTTGTTCATGAGCA+AGG | 0.550972 | 5.4:+19973859 | MS.gene051309:CDS |
| CCTTCTGGATTCCAAAAGAA+GGG | 0.568913 | 5.4:-19973151 | None:intergenic |
| CTTCAACGAAGCTATCATTG+AGG | 0.569106 | 5.4:+19973768 | MS.gene051309:CDS |
| TTCAAGACTTAGAGTCCGGC+CGG | 0.574901 | 5.4:+19971873 | MS.gene051309:CDS |
| GAGTTCGGGCGTGTCTTTGG+GGG | 0.575373 | 5.4:-19972005 | None:intergenic |
| CAATATGAAGTCTCGTCTTG+TGG | 0.580440 | 5.4:-19972127 | None:intergenic |
| GGCCGGCGAAACCAAATCAA+CGG | 0.582106 | 5.4:+19971890 | MS.gene051309:CDS |
| CTGGATGGCTGAACTTCATG+TGG | 0.589529 | 5.4:-19972971 | None:intergenic |
| AGCTATACAGGCAGTGAAGT+AGG | 0.592494 | 5.4:+19973096 | MS.gene051309:intron |
| ATCATTGAGGAAAGAGAACA+AGG | 0.597740 | 5.4:+19973781 | MS.gene051309:CDS |
| CACAGCGTCTTGCAGCTGAG+AGG | 0.606915 | 5.4:+19972924 | MS.gene051309:CDS |
| TCATATTGGACAATTGGTGA+AGG | 0.616859 | 5.4:+19972142 | MS.gene051309:CDS |
| ACATCGGTCAGTCACCTGGA+TGG | 0.632153 | 5.4:-19972986 | None:intergenic |
| TTATTCATTCTGCAGACAGG+AGG | 0.640635 | 5.4:+19973720 | MS.gene051309:intron |
| GAGTCTCTGAAAAGTGGAGA+CGG | 0.652024 | 5.4:-19971966 | None:intergenic |
| TGATCTCTCACAGTTTCTCG+CGG | 0.652360 | 5.4:-19972027 | None:intergenic |
| CAAACAAGACCCGACTCAAG+CGG | 0.664630 | 5.4:+19971913 | MS.gene051309:CDS |
| ACAATTGGTGAAGGATACGT+CGG | 0.684662 | 5.4:+19972151 | MS.gene051309:CDS |
| GGTGTTGATCTGAAACACGC+CGG | 0.724240 | 5.4:-19971942 | None:intergenic |
| TCTCTGAAAAGTGGAGACGG+CGG | 0.749722 | 5.4:-19971963 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATAAAATAAGTTATAT+TGG | - | chr5.4:19972426-19972445 | None:intergenic | 10.0% |
| !! | AATATATAGTTAATAACTAT+AGG | + | chr5.4:19974317-19974336 | MS.gene051309:intron | 10.0% |
| !! | CAACAAAAAATAAAAAATAA+AGG | - | chr5.4:19973915-19973934 | None:intergenic | 10.0% |
| !! | TTACATATAAATAATACAAT+AGG | - | chr5.4:19973531-19973550 | None:intergenic | 10.0% |
| !! | TTATTAACTATATATTATGT+AGG | - | chr5.4:19974313-19974332 | None:intergenic | 10.0% |
| !! | AAAAAATAAAAAATAAAGGG+TGG | - | chr5.4:19973911-19973930 | None:intergenic | 15.0% |
| !! | AAAAATAAAAAATAAAGGGT+GGG | - | chr5.4:19973910-19973929 | None:intergenic | 15.0% |
| !! | TATCACATCATATATTATAT+TGG | - | chr5.4:19973301-19973320 | None:intergenic | 15.0% |
| !! | TCAAATTAATCAAAGTTTAA+TGG | + | chr5.4:19972273-19972292 | MS.gene051309:intron | 15.0% |
| !! | TTTAATTGATCATAATGAAT+CGG | + | chr5.4:19972632-19972651 | MS.gene051309:intron | 15.0% |
| !!! | CTTTAAAAGATAAAAGAAAA+AGG | - | chr5.4:19974566-19974585 | None:intergenic | 15.0% |
| !! | AATAAACAACTAACAAAACA+TGG | - | chr5.4:19972749-19972768 | None:intergenic | 20.0% |
| !! | AATAACTATAGGAGTTAAAA+AGG | + | chr5.4:19974328-19974347 | MS.gene051309:intron | 20.0% |
| !! | ACATTAAACTCTAATAACAT+CGG | - | chr5.4:19973005-19973024 | None:intergenic | 20.0% |
| !! | ATAACTATAGGAGTTAAAAA+GGG | + | chr5.4:19974329-19974348 | MS.gene051309:intron | 20.0% |
| !! | ATTTCTATTTATATGGAGAA+AGG | + | chr5.4:19974431-19974450 | MS.gene051309:intron | 20.0% |
| !! | GCATTTCATTTCTATTTATA+TGG | + | chr5.4:19974424-19974443 | MS.gene051309:intron | 20.0% |
| !! | TTAATTGATCATAATGAATC+GGG | + | chr5.4:19972633-19972652 | MS.gene051309:intron | 20.0% |
| !! | TTTCTATTTATATGGAGAAA+GGG | + | chr5.4:19974432-19974451 | MS.gene051309:intron | 20.0% |
| !!! | AACATCAATTATTTCTCAAA+AGG | + | chr5.4:19973488-19973507 | MS.gene051309:intron | 20.0% |
| !!! | TCATCAAATTTAATTTCATG+TGG | - | chr5.4:19973646-19973665 | None:intergenic | 20.0% |
| !!! | TTCATTTTGTAGATGATATT+GGG | + | chr5.4:19974031-19974050 | MS.gene051309:intron | 20.0% |
| !!! | TTCGATTTTAAGATATTGAT+TGG | + | chr5.4:19972088-19972107 | MS.gene051309:intron | 20.0% |
| !!! | TTTCATTTTGTAGATGATAT+TGG | + | chr5.4:19974030-19974049 | MS.gene051309:intron | 20.0% |
| ! | AATTTCTGTATTGTATTTGC+AGG | + | chr5.4:19972832-19972851 | MS.gene051309:intron | 25.0% |
| ! | CTAAGAAACTAACAATCAAA+TGG | - | chr5.4:19973692-19973711 | None:intergenic | 25.0% |
| ! | GAAATAGCTTAAACATAACT+TGG | + | chr5.4:19972453-19972472 | MS.gene051309:intron | 25.0% |
| ! | GTAATTATATTTGGCTGAAA+TGG | + | chr5.4:19973547-19973566 | MS.gene051309:intron | 25.0% |
| ! | TAACTATAGGAGTTAAAAAG+GGG | + | chr5.4:19974330-19974349 | MS.gene051309:intron | 25.0% |
| ! | TATTGCACAATTGTATGTAT+AGG | - | chr5.4:19973045-19973064 | None:intergenic | 25.0% |
| !! | CAGCACAATTTTCTAATTAT+GGG | + | chr5.4:19974515-19974534 | MS.gene051309:intron | 25.0% |
| !! | TCAGCACAATTTTCTAATTA+TGG | + | chr5.4:19974514-19974533 | MS.gene051309:intron | 25.0% |
| !!! | CTTCTTTTAAGTTTTCTATC+TGG | + | chr5.4:19973590-19973609 | MS.gene051309:intron | 25.0% |
| !!! | TCTTTTTATAATTGGGTTGT+TGG | + | chr5.4:19974156-19974175 | MS.gene051309:intron | 25.0% |
| AATAAAAAATAAAGGGTGGG+AGG | - | chr5.4:19973907-19973926 | None:intergenic | 30.0% | |
| ACCATACTGAATTAAACCAA+TGG | - | chr5.4:19974388-19974407 | None:intergenic | 30.0% | |
| ACGGTTTATCACACATTATA+TGG | - | chr5.4:19972314-19972333 | None:intergenic | 30.0% | |
| ATAAAAAATAAAGGGTGGGA+GGG | - | chr5.4:19973906-19973925 | None:intergenic | 30.0% | |
| ATGACTATACCAAGTTTAGA+CGG | + | chr5.4:19972574-19972593 | MS.gene051309:intron | 30.0% | |
| ATTGTGCAATACTAATAGCA+CGG | + | chr5.4:19973054-19973073 | MS.gene051309:intron | 30.0% | |
| CAATGGCTACATATTCTATT+AGG | - | chr5.4:19974371-19974390 | None:intergenic | 30.0% | |
| CACCAAATTAATTTAGGTGT+GGG | + | chr5.4:19974200-19974219 | MS.gene051309:intron | 30.0% | |
| CATGCATTTGCAAATTTATG+AGG | + | chr5.4:19973362-19973381 | MS.gene051309:intron | 30.0% | |
| CTAATAGAATATGTAGCCAT+TGG | + | chr5.4:19974369-19974388 | MS.gene051309:intron | 30.0% | |
| CTTAAAAGAAGTCAACGTTA+TGG | - | chr5.4:19973581-19973600 | None:intergenic | 30.0% | |
| GAAGGAAATCTCATTATCTA+AGG | - | chr5.4:19973752-19973771 | None:intergenic | 30.0% | |
| GTTTAATTCAGTATGGTTCT+CGG | + | chr5.4:19974391-19974410 | MS.gene051309:intron | 30.0% | |
| TAAGTTCAGTACAATATGTG+AGG | - | chr5.4:19974277-19974296 | None:intergenic | 30.0% | |
| TATACCTTGCTCATAAACTT+CGG | + | chr5.4:19973258-19973277 | MS.gene051309:intron | 30.0% | |
| TCAGCAACATAATAAATGCA+AGG | + | chr5.4:19973433-19973452 | MS.gene051309:intron | 30.0% | |
| TGCTTACTTATGGTGATATT+TGG | + | chr5.4:19974656-19974675 | MS.gene051309:CDS | 30.0% | |
| TTCATGAGAATTCTCAATGT+TGG | - | chr5.4:19974058-19974077 | None:intergenic | 30.0% | |
| TTCCCACACCTAAATTAATT+TGG | - | chr5.4:19974205-19974224 | None:intergenic | 30.0% | |
| ! | ATGCTGTTCTTGACTTTTAT+CGG | - | chr5.4:19973130-19973149 | None:intergenic | 30.0% |
| ! | ATTAAGTTGTTTACCCAAAC+AGG | + | chr5.4:19972500-19972519 | MS.gene051309:intron | 30.0% |
| ! | CACACCTAAATTAATTTGGT+GGG | - | chr5.4:19974201-19974220 | None:intergenic | 30.0% |
| ! | TATACAAAGTTGATCAAGTG+CGG | + | chr5.4:19972551-19972570 | MS.gene051309:intron | 30.0% |
| ! | TTAAGTTGTTTACCCAAACA+GGG | + | chr5.4:19972501-19972520 | MS.gene051309:intron | 30.0% |
| ! | TTTTCTAATTATGGGAGTTG+AGG | + | chr5.4:19974523-19974542 | MS.gene051309:intron | 30.0% |
| !! | ACATGTTCATACGTTGTTTT+CGG | + | chr5.4:19972348-19972367 | MS.gene051309:intron | 30.0% |
| !! | AGTAACATTAGAGTTGATAG+AGG | - | chr5.4:19973950-19973969 | None:intergenic | 30.0% |
| ACAAAGATCAAGCTCATCTT+TGG | + | chr5.4:19974122-19974141 | MS.gene051309:CDS | 35.0% | |
| ACCAACCCATATCAAAGAAA+AGG | - | chr5.4:19973410-19973429 | None:intergenic | 35.0% | |
| ACTCTTCATTATGGCTGAAT+CGG | + | chr5.4:19972049-19972068 | MS.gene051309:intron | 35.0% | |
| AGATACAAGAAATCACCTTC+TGG | - | chr5.4:19973169-19973188 | None:intergenic | 35.0% | |
| ATCAAAGAAAAGGACAGGAA+GGG | - | chr5.4:19973400-19973419 | None:intergenic | 35.0% | |
| ATCATTGAGGAAAGAGAACA+AGG | + | chr5.4:19973781-19973800 | MS.gene051309:CDS | 35.0% | |
| CATGTCACGAGTTATATTGA+CGG | - | chr5.4:19972333-19972352 | None:intergenic | 35.0% | |
| CCACCAAATTAATTTAGGTG+TGG | + | chr5.4:19974199-19974218 | MS.gene051309:intron | 35.0% | |
| GAAGATAGCAGATGCTAAAT+TGG | + | chr5.4:19972862-19972881 | MS.gene051309:CDS | 35.0% | |
| GAGACTTCATATTGGACAAT+TGG | + | chr5.4:19972136-19972155 | MS.gene051309:CDS | 35.0% | |
| GCATTTGCAAATTTATGAGG+CGG | + | chr5.4:19973365-19973384 | MS.gene051309:intron | 35.0% | |
| GGTTTCAGTTCACTAAACAA+TGG | - | chr5.4:19974252-19974271 | None:intergenic | 35.0% | |
| GTCCAATTGACAAAAAACAG+TGG | + | chr5.4:19972523-19972542 | MS.gene051309:intron | 35.0% | |
| TAAAAAATAAAGGGTGGGAG+GGG | - | chr5.4:19973905-19973924 | None:intergenic | 35.0% | |
| TAATGATCACCGTCTAAACT+TGG | - | chr5.4:19972586-19972605 | None:intergenic | 35.0% | |
| TATCAAAGAAAAGGACAGGA+AGG | - | chr5.4:19973401-19973420 | None:intergenic | 35.0% | |
| TCATATTGGACAATTGGTGA+AGG | + | chr5.4:19972142-19972161 | MS.gene051309:CDS | 35.0% | |
| TCCTCCCACCAAATTAATTT+AGG | + | chr5.4:19974194-19974213 | MS.gene051309:intron | 35.0% | |
| TGAACTTCATGTGGAACAAA+AGG | - | chr5.4:19972965-19972984 | None:intergenic | 35.0% | |
| TGAGAGATCACTCTTCATTA+TGG | + | chr5.4:19972040-19972059 | MS.gene051309:intron | 35.0% | |
| TTATCCGAAGTTTATGAGCA+AGG | - | chr5.4:19973265-19973284 | None:intergenic | 35.0% | |
| TTCAGTACAATATGTGAGGA+AGG | - | chr5.4:19974273-19974292 | None:intergenic | 35.0% | |
| TTGTGCAATACTAATAGCAC+GGG | + | chr5.4:19973055-19973074 | MS.gene051309:intron | 35.0% | |
| TTTAGCATCTGCTATCTTCT+TGG | - | chr5.4:19972861-19972880 | None:intergenic | 35.0% | |
| ! | ACCTAAATTAATTTGGTGGG+AGG | - | chr5.4:19974198-19974217 | None:intergenic | 35.0% |
| ! | CCACACCTAAATTAATTTGG+TGG | - | chr5.4:19974202-19974221 | None:intergenic | 35.0% |
| ! | CCTGTCCTTTTCTTTGATAT+GGG | + | chr5.4:19973402-19973421 | MS.gene051309:intron | 35.0% |
| ! | TCCTGTCCTTTTCTTTGATA+TGG | + | chr5.4:19973401-19973420 | MS.gene051309:intron | 35.0% |
| ! | TCCTTTTCTTTGATATGGGT+TGG | + | chr5.4:19973406-19973425 | MS.gene051309:intron | 35.0% |
| !! | AGTTTTCAAGACTTAGAGTC+CGG | + | chr5.4:19971869-19971888 | MS.gene051309:CDS | 35.0% |
| !! | ATGGAGAAAGGGATTTGTTT+TGG | + | chr5.4:19974443-19974462 | MS.gene051309:intron | 35.0% |
| !! | GCCATTGGTTTAATTCAGTA+TGG | + | chr5.4:19974384-19974403 | MS.gene051309:intron | 35.0% |
| !! | TGGAGAAAGGGATTTGTTTT+GGG | + | chr5.4:19974444-19974463 | MS.gene051309:intron | 35.0% |
| !!! | AGCCACTGTTTTTTGTCAAT+TGG | - | chr5.4:19972528-19972547 | None:intergenic | 35.0% |
| ACAATTGGTGAAGGATACGT+CGG | + | chr5.4:19972151-19972170 | MS.gene051309:CDS | 40.0% | |
| ACCTTCTGGATTCCAAAAGA+AGG | - | chr5.4:19973155-19973174 | None:intergenic | 40.0% | |
| AGTAAGCACGCCTAGATAAA+AGG | - | chr5.4:19974644-19974663 | None:intergenic | 40.0% | |
| CAATATGAAGTCTCGTCTTG+TGG | - | chr5.4:19972130-19972149 | None:intergenic | 40.0% | |
| CACAAGACGAGACTTCATAT+TGG | + | chr5.4:19972128-19972147 | MS.gene051309:CDS | 40.0% | |
| CCCATATCAAAGAAAAGGAC+AGG | - | chr5.4:19973405-19973424 | None:intergenic | 40.0% | |
| CCTTCTGGATTCCAAAAGAA+GGG | - | chr5.4:19973154-19973173 | None:intergenic | 40.0% | |
| CTCAATGATAGCTTCGTTGA+AGG | - | chr5.4:19973770-19973789 | None:intergenic | 40.0% | |
| CTTCAACGAAGCTATCATTG+AGG | + | chr5.4:19973768-19973787 | MS.gene051309:CDS | 40.0% | |
| GCATTATTCATTCTGCAGAC+AGG | + | chr5.4:19973717-19973736 | MS.gene051309:intron | 40.0% | |
| GTAAGCACGCCTAGATAAAA+GGG | - | chr5.4:19974643-19974662 | None:intergenic | 40.0% | |
| TAAGCACGCCTAGATAAAAG+GGG | - | chr5.4:19974642-19974661 | None:intergenic | 40.0% | |
| TATCTAGGCGTGCTTACTTA+TGG | + | chr5.4:19974646-19974665 | MS.gene051309:intron | 40.0% | |
| TTATTCATTCTGCAGACAGG+AGG | + | chr5.4:19973720-19973739 | MS.gene051309:intron | 40.0% | |
| TTGTCAATTGGACCCTGTTT+GGG | - | chr5.4:19972516-19972535 | None:intergenic | 40.0% | |
| TTTGTCAATTGGACCCTGTT+TGG | - | chr5.4:19972517-19972536 | None:intergenic | 40.0% | |
| ! | AACAAGTTGCGATTTTGCCT+GGG | - | chr5.4:19974088-19974107 | None:intergenic | 40.0% |
| ! | AGAACAGCATACCCTTCTTT+TGG | + | chr5.4:19973140-19973159 | MS.gene051309:CDS | 40.0% |
| ! | GTTAACGAGTCTCTGAAAAG+TGG | - | chr5.4:19971975-19971994 | None:intergenic | 40.0% |
| !! | GTTGTTTCCCCCTTTTATCT+AGG | + | chr5.4:19974631-19974650 | MS.gene051309:intron | 40.0% |
| !!! | AGAAAGGGATTTGTTTTGGG+GGG | + | chr5.4:19974447-19974466 | MS.gene051309:intron | 40.0% |
| !!! | GAGAAAGGGATTTGTTTTGG+GGG | + | chr5.4:19974446-19974465 | MS.gene051309:intron | 40.0% |
| !!! | GGAGAAAGGGATTTGTTTTG+GGG | + | chr5.4:19974445-19974464 | MS.gene051309:intron | 40.0% |
| AAGCACGCCTAGATAAAAGG+GGG | - | chr5.4:19974641-19974660 | None:intergenic | 45.0% | |
| AATAACATCGGTCAGTCACC+TGG | - | chr5.4:19972993-19973012 | None:intergenic | 45.0% | |
| AGCTATACAGGCAGTGAAGT+AGG | + | chr5.4:19973096-19973115 | MS.gene051309:intron | 45.0% | |
| CAAGAAATCCAGCAGCAGAT+AGG | + | chr5.4:19973808-19973827 | MS.gene051309:CDS | 45.0% | |
| CAGAGACTCGTTAACACTCT+CGG | + | chr5.4:19971980-19971999 | MS.gene051309:CDS | 45.0% | |
| CATGAGCAAGGAGCAATGAT+TGG | + | chr5.4:19973871-19973890 | MS.gene051309:CDS | 45.0% | |
| GCTGTACTTGTTCATGAGCA+AGG | + | chr5.4:19973859-19973878 | MS.gene051309:CDS | 45.0% | |
| TGATCTCTCACAGTTTCTCG+CGG | - | chr5.4:19972030-19972049 | None:intergenic | 45.0% | |
| TTACTTCACCTATCTGCTGC+TGG | - | chr5.4:19973819-19973838 | None:intergenic | 45.0% | |
| ! | GAACAAGTTGCGATTTTGCC+TGG | - | chr5.4:19974089-19974108 | None:intergenic | 45.0% |
| ! | GAGTCTCTGAAAAGTGGAGA+CGG | - | chr5.4:19971969-19971988 | None:intergenic | 45.0% |
| !! | GGTCTTGTTTGCCGTTGATT+TGG | - | chr5.4:19971904-19971923 | None:intergenic | 45.0% |
| !!! | CCCTTCTTTTGGAATCCAGA+AGG | + | chr5.4:19973151-19973170 | MS.gene051309:CDS | 45.0% |
| !! | AACAAAAAATAAAAAATAAA+GGG | - | chr5.4:19973914-19973933 | None:intergenic | 5.0% |
| !! | TATTTATATGTAATTATATT+TGG | + | chr5.4:19973538-19973557 | MS.gene051309:intron | 5.0% |
| !!! | ATAAATTTTCTTTTTATAAT+TGG | + | chr5.4:19974148-19974167 | MS.gene051309:intron | 5.0% |
| !!! | TAAATTTTCTTTTTATAATT+GGG | + | chr5.4:19974149-19974168 | MS.gene051309:intron | 5.0% |
| CAAACAAGACCCGACTCAAG+CGG | + | chr5.4:19971913-19971932 | MS.gene051309:CDS | 50.0% | |
| CACATGAAGTTCAGCCATCC+AGG | + | chr5.4:19972972-19972991 | MS.gene051309:CDS | 50.0% | |
| CTGGATGGCTGAACTTCATG+TGG | - | chr5.4:19972974-19972993 | None:intergenic | 50.0% | |
| TCACAGTTTCTCGCGGAGTT+CGG | - | chr5.4:19972023-19972042 | None:intergenic | 50.0% | |
| TCACTGCCTGTATAGCTGCA+GGG | - | chr5.4:19973093-19973112 | None:intergenic | 50.0% | |
| TTCAAGACTTAGAGTCCGGC+CGG | + | chr5.4:19971873-19971892 | MS.gene051309:CDS | 50.0% | |
| TTCACTGCCTGTATAGCTGC+AGG | - | chr5.4:19973094-19973113 | None:intergenic | 50.0% | |
| ! | TCTCTGAAAAGTGGAGACGG+CGG | - | chr5.4:19971966-19971985 | None:intergenic | 50.0% |
| !! | GGTGTTGATCTGAAACACGC+CGG | - | chr5.4:19971945-19971964 | None:intergenic | 50.0% |
| !! | TGCCGTTGATTTGGTTTCGC+CGG | - | chr5.4:19971895-19971914 | None:intergenic | 50.0% |
| ACAGCGTCTTGCAGCTGAGA+GGG | + | chr5.4:19972925-19972944 | MS.gene051309:CDS | 55.0% | |
| ACATCGGTCAGTCACCTGGA+TGG | - | chr5.4:19972989-19973008 | None:intergenic | 55.0% | |
| CACAGTTTCTCGCGGAGTTC+GGG | - | chr5.4:19972022-19972041 | None:intergenic | 55.0% | |
| GGCCGGCGAAACCAAATCAA+CGG | + | chr5.4:19971890-19971909 | MS.gene051309:CDS | 55.0% | |
| TTCTCATGAAGCCACTGCCC+AGG | + | chr5.4:19974068-19974087 | MS.gene051309:CDS | 55.0% | |
| ! | TTGCGATTTTGCCTGGGCAG+TGG | - | chr5.4:19974082-19974101 | None:intergenic | 55.0% |
| !! | GTTGATTTGGTTTCGCCGGC+CGG | - | chr5.4:19971891-19971910 | None:intergenic | 55.0% |
| !!! | AGGGATTTGTTTTGGGGGGC+AGG | + | chr5.4:19974451-19974470 | MS.gene051309:intron | 55.0% |
| !!! | GGATTTGTTTTGGGGGGCAG+GGG | + | chr5.4:19974453-19974472 | MS.gene051309:intron | 55.0% |
| !!! | GGGATTTGTTTTGGGGGGCA+GGG | + | chr5.4:19974452-19974471 | MS.gene051309:intron | 55.0% |
| CACAGCGTCTTGCAGCTGAG+AGG | + | chr5.4:19972924-19972943 | MS.gene051309:CDS | 60.0% | |
| CCGACTCAAGCGGTAGCTTC+CGG | + | chr5.4:19971923-19971942 | MS.gene051309:CDS | 60.0% | |
| CCGGAAGCTACCGCTTGAGT+CGG | - | chr5.4:19971926-19971945 | None:intergenic | 60.0% | |
| CGGAAGCTACCGCTTGAGTC+GGG | - | chr5.4:19971925-19971944 | None:intergenic | 60.0% | |
| CGGAGTTCGGGCGTGTCTTT+GGG | - | chr5.4:19972010-19972029 | None:intergenic | 60.0% | |
| CTGCCTGTATAGCTGCAGGG+CGG | - | chr5.4:19973090-19973109 | None:intergenic | 60.0% | |
| GAGTTCGGGCGTGTCTTTGG+GGG | - | chr5.4:19972008-19972027 | None:intergenic | 60.0% | |
| GGAGTTCGGGCGTGTCTTTG+GGG | - | chr5.4:19972009-19972028 | None:intergenic | 60.0% | |
| TCTCCGCCCTGCAGCTATAC+AGG | + | chr5.4:19973084-19973103 | MS.gene051309:intron | 60.0% | |
| !! | GCAGGGGTGTGAGGTTTTGG+TGG | + | chr5.4:19974469-19974488 | MS.gene051309:intron | 60.0% |
| GCGGAGTTCGGGCGTGTCTT+TGG | - | chr5.4:19972011-19972030 | None:intergenic | 65.0% | |
| !! | GGGGCAGGGGTGTGAGGTTT+TGG | + | chr5.4:19974466-19974485 | MS.gene051309:intron | 65.0% |
| !! | TTTTGGGGGGCAGGGGTGTG+AGG | + | chr5.4:19974460-19974479 | MS.gene051309:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 19971866 | 19974718 | 19971866 | ID=MS.gene051309 |
| chr5.4 | mRNA | 19971866 | 19974718 | 19971866 | ID=MS.gene051309.t1;Parent=MS.gene051309 |
| chr5.4 | exon | 19971866 | 19972038 | 19971866 | ID=MS.gene051309.t1.exon1;Parent=MS.gene051309.t1 |
| chr5.4 | CDS | 19971866 | 19972038 | 19971866 | ID=cds.MS.gene051309.t1;Parent=MS.gene051309.t1 |
| chr5.4 | exon | 19972127 | 19972220 | 19972127 | ID=MS.gene051309.t1.exon2;Parent=MS.gene051309.t1 |
| chr5.4 | CDS | 19972127 | 19972220 | 19972127 | ID=cds.MS.gene051309.t1;Parent=MS.gene051309.t1 |
| chr5.4 | exon | 19972854 | 19972993 | 19972854 | ID=MS.gene051309.t1.exon3;Parent=MS.gene051309.t1 |
| chr5.4 | CDS | 19972854 | 19972993 | 19972854 | ID=cds.MS.gene051309.t1;Parent=MS.gene051309.t1 |
| chr5.4 | exon | 19973098 | 19973172 | 19973098 | ID=MS.gene051309.t1.exon4;Parent=MS.gene051309.t1 |
| chr5.4 | CDS | 19973098 | 19973172 | 19973098 | ID=cds.MS.gene051309.t1;Parent=MS.gene051309.t1 |
| chr5.4 | exon | 19973735 | 19973892 | 19973735 | ID=MS.gene051309.t1.exon5;Parent=MS.gene051309.t1 |
| chr5.4 | CDS | 19973735 | 19973892 | 19973735 | ID=cds.MS.gene051309.t1;Parent=MS.gene051309.t1 |
| chr5.4 | exon | 19974043 | 19974143 | 19974043 | ID=MS.gene051309.t1.exon6;Parent=MS.gene051309.t1 |
| chr5.4 | CDS | 19974043 | 19974143 | 19974043 | ID=cds.MS.gene051309.t1;Parent=MS.gene051309.t1 |
| chr5.4 | exon | 19974653 | 19974718 | 19974653 | ID=MS.gene051309.t1.exon7;Parent=MS.gene051309.t1 |
| chr5.4 | CDS | 19974653 | 19974718 | 19974653 | ID=cds.MS.gene051309.t1;Parent=MS.gene051309.t1 |
| Gene Sequence |
| Protein sequence |
