Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051593.t1 | XP_003588985.1 | 94.7 | 283 | 11 | 1 | 1 | 283 | 2 | 280 | 5.40E-149 | 537 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051593.t1 | G7I9X5 | 94.7 | 283 | 11 | 1 | 1 | 283 | 2 | 280 | 3.9e-149 | 537.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene051593 | MS.gene047175 | PPI |
| MS.gene051593 | MS.gene072034 | PPI |
| MS.gene051593 | MS.gene00645 | PPI |
| MS.gene002071 | MS.gene051593 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051593.t1 | MTR_1g016080 | 94.700 | 283 | 11 | 1 | 1 | 283 | 2 | 280 | 0.0 | 554 |
| MS.gene051593.t1 | MTR_3g104420 | 67.041 | 267 | 85 | 2 | 19 | 283 | 7 | 272 | 1.84e-131 | 374 |
| MS.gene051593.t1 | MTR_2g006770 | 42.979 | 235 | 134 | 0 | 41 | 275 | 17 | 251 | 1.96e-66 | 209 |
| MS.gene051593.t1 | MTR_8g089715 | 40.948 | 232 | 134 | 1 | 42 | 270 | 15 | 246 | 1.40e-63 | 200 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051593.t1 | AT5G11870 | 51.282 | 273 | 128 | 2 | 11 | 282 | 1 | 269 | 7.09e-101 | 296 |
| MS.gene051593.t1 | AT5G11870 | 51.128 | 266 | 125 | 2 | 11 | 275 | 1 | 262 | 2.42e-97 | 287 |
| MS.gene051593.t1 | AT1G71190 | 43.038 | 237 | 134 | 1 | 45 | 280 | 21 | 257 | 3.45e-62 | 198 |
| MS.gene051593.t1 | AT1G71190 | 35.622 | 233 | 110 | 1 | 45 | 277 | 21 | 213 | 4.21e-48 | 160 |
Find 54 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTCTATGGTGGAATTAT+AGG | 0.187272 | 1.3:+6173431 | MS.gene051593:CDS |
| AGTGGGAGAGCGTGGAATTT+TGG | 0.192446 | 1.3:-6173068 | None:intergenic |
| CGTTATCAGCGGGCACTCTT+TGG | 0.268066 | 1.3:+6174877 | MS.gene051593:CDS |
| GCTGACTTGCGCAATCTTCT+TGG | 0.276021 | 1.3:+6173103 | MS.gene051593:CDS |
| GGAATTATAGGGCTGGCTTT+TGG | 0.293351 | 1.3:+6173443 | MS.gene051593:CDS |
| ACTATACTCACTCAAGATAT+TGG | 0.300455 | 1.3:+6174704 | MS.gene051593:CDS |
| GTGATCACATTCAACGTATT+GGG | 0.314603 | 1.3:-6173220 | None:intergenic |
| ACAGGGAGCGTAAGTTTAAA+AGG | 0.336107 | 1.3:+6174951 | MS.gene051593:CDS |
| CACAAGACCCTATTGTTATC+AGG | 0.348477 | 1.3:-6173488 | None:intergenic |
| TTCAGAATTGGAGTTTGAAT+TGG | 0.355442 | 1.3:+6172933 | MS.gene051593:CDS |
| GGTCTTGTGGGACACTTTGC+CGG | 0.357053 | 1.3:+6173502 | MS.gene051593:CDS |
| GCAGAACTTATGATGATATT+CGG | 0.357442 | 1.3:+6174614 | MS.gene051593:intron |
| TGTGATCACATTCAACGTAT+TGG | 0.361470 | 1.3:-6173221 | None:intergenic |
| GGTTTAGTTCTTGCTCTTGA+AGG | 0.361789 | 1.3:+6173274 | MS.gene051593:CDS |
| TATTCTATGGTGGAATTATA+GGG | 0.371402 | 1.3:+6173432 | MS.gene051593:CDS |
| ATTTGAAGCCTGATAACAAT+AGG | 0.374727 | 1.3:+6173480 | MS.gene051593:CDS |
| AGTTTGGTTATTGAGAGAAT+TGG | 0.409279 | 1.3:+6174401 | MS.gene051593:CDS |
| TGGGCTTGGATACTATTCTA+TGG | 0.410484 | 1.3:+6173419 | MS.gene051593:CDS |
| CACAAGTAAAGGCTGCAAAA+AGG | 0.411062 | 1.3:-6174457 | None:intergenic |
| TGACGATGATGATTCAGAAT+TGG | 0.423301 | 1.3:+6172921 | None:intergenic |
| TTAGTGTGATGCTCATCTAC+AGG | 0.457946 | 1.3:+6174933 | MS.gene051593:CDS |
| TATTGTTATCAGGCTTCAAA+TGG | 0.472055 | 1.3:-6173478 | None:intergenic |
| TAGCTAAAGGAAGAATGAAC+TGG | 0.473251 | 1.3:-6174651 | None:intergenic |
| TTCATAAACAACACAAGTAA+AGG | 0.483567 | 1.3:-6174468 | None:intergenic |
| CTATGGTGGAATTATAGGGC+TGG | 0.485242 | 1.3:+6173436 | MS.gene051593:CDS |
| GAGAGAATTGGCCAGCGGAT+TGG | 0.488071 | 1.3:+6174413 | MS.gene051593:CDS |
| ATATCTTGAGTGAGTATAGT+TGG | 0.488075 | 1.3:-6174701 | None:intergenic |
| TGATAACAATAGGGTCTTGT+GGG | 0.494329 | 1.3:+6173490 | MS.gene051593:CDS |
| TTTGGGAGAGAAGAGAAAGA+AGG | 0.500392 | 1.3:-6173050 | None:intergenic |
| GATTGCGCAAGTCAGCGAAT+TGG | 0.503286 | 1.3:-6173096 | None:intergenic |
| TTACTTGTGTTGTTTATGAA+CGG | 0.506820 | 1.3:+6174471 | MS.gene051593:CDS |
| CTCAAGCAGAGACATGGGCT+TGG | 0.517835 | 1.3:+6173405 | MS.gene051593:CDS |
| TTTGAAGCCTGATAACAATA+GGG | 0.522182 | 1.3:+6173481 | MS.gene051593:CDS |
| TTAGTTCTTGCTCTTGAAGG+AGG | 0.523447 | 1.3:+6173277 | MS.gene051593:CDS |
| TGGTGGTGAGTGGGAGAGCG+TGG | 0.525369 | 1.3:-6173076 | None:intergenic |
| TGCGCAAGTCAGCGAATTGG+TGG | 0.545924 | 1.3:-6173093 | None:intergenic |
| GCAGCTGCTGCAATAGCTAA+AGG | 0.548300 | 1.3:-6174664 | None:intergenic |
| TTAGTTCTCAAGCAGAGACA+TGG | 0.556857 | 1.3:+6173399 | MS.gene051593:intron |
| CTGATAACAATAGGGTCTTG+TGG | 0.556895 | 1.3:+6173489 | MS.gene051593:CDS |
| TACAACACATTCCAATCCGC+TGG | 0.561576 | 1.3:-6174424 | None:intergenic |
| GCAAATAACTACGTTATCAG+CGG | 0.576718 | 1.3:+6174866 | MS.gene051593:CDS |
| GAATTGGAGTTTGAATTGGA+TGG | 0.576928 | 1.3:+6172937 | MS.gene051593:CDS |
| CAAATAACTACGTTATCAGC+GGG | 0.577528 | 1.3:+6174867 | MS.gene051593:CDS |
| TCAGCGAATTGGTGGTGAGT+GGG | 0.583504 | 1.3:-6173085 | None:intergenic |
| TAGTGTGATGCTCATCTACA+GGG | 0.584946 | 1.3:+6174934 | MS.gene051593:CDS |
| TCTTGAGTGAGTATAGTTGG+AGG | 0.603494 | 1.3:-6174698 | None:intergenic |
| GTCAGCGAATTGGTGGTGAG+TGG | 0.609089 | 1.3:-6173086 | None:intergenic |
| CTTGAGTGAGTATAGTTGGA+GGG | 0.610335 | 1.3:-6174697 | None:intergenic |
| TAGTTCTCAAGCAGAGACAT+GGG | 0.618415 | 1.3:+6173400 | MS.gene051593:intron |
| TGATAACGTAGTTATTTGCA+CGG | 0.644610 | 1.3:-6174862 | None:intergenic |
| GCTTGGATACTATTCTATGG+TGG | 0.660704 | 1.3:+6173422 | MS.gene051593:CDS |
| GTACTAATGGCAGATGATGG+TGG | 0.689902 | 1.3:+6174358 | MS.gene051593:intron |
| AACCAAACTAGAGAAAAGTG+AGG | 0.710937 | 1.3:-6174387 | None:intergenic |
| TTATTGAGAGAATTGGCCAG+CGG | 0.722249 | 1.3:+6174408 | MS.gene051593:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATATATTCATATGTAA+TGG | - | chr1.3:6173541-6173560 | None:intergenic | 10.0% |
| !! | TAAATATATTCATATGTAAT+GGG | - | chr1.3:6173540-6173559 | None:intergenic | 10.0% |
| !! | TGTTATAGAAATAACTTATA+CGG | - | chr1.3:6173765-6173784 | None:intergenic | 15.0% |
| !!! | AACTATTTCTATATTTGAAT+AGG | + | chr1.3:6173958-6173977 | MS.gene051593:intron | 15.0% |
| !!! | ACTATTTCTATATTTGAATA+GGG | + | chr1.3:6173959-6173978 | MS.gene051593:intron | 15.0% |
| !!! | AGATTTCATTTTTCTTAATT+TGG | + | chr1.3:6173164-6173183 | MS.gene051593:intron | 15.0% |
| !!! | TTTAAATGTTTTATACTTTG+AGG | + | chr1.3:6174540-6174559 | MS.gene051593:intron | 15.0% |
| !! | AAACTAAAATAAGTCAATCA+GGG | - | chr1.3:6175386-6175405 | None:intergenic | 20.0% |
| !! | AGGAAACATTAATTACAAAA+AGG | - | chr1.3:6175680-6175699 | None:intergenic | 20.0% |
| !! | ATAATAGAATTTACTGTGAT+TGG | + | chr1.3:6173345-6173364 | MS.gene051593:intron | 20.0% |
| !! | CTTATAAAGAGAAAATGTTA+AGG | + | chr1.3:6174227-6174246 | MS.gene051593:intron | 20.0% |
| !! | TAAACTAAAATAAGTCAATC+AGG | - | chr1.3:6175387-6175406 | None:intergenic | 20.0% |
| !! | TCTGTCATAATTTAAACAAA+TGG | - | chr1.3:6174199-6174218 | None:intergenic | 20.0% |
| !!! | ATGACATTTCAAATTTTTGA+AGG | - | chr1.3:6175128-6175147 | None:intergenic | 20.0% |
| !!! | ATTGTTTTCATAAGATATCT+TGG | - | chr1.3:6175514-6175533 | None:intergenic | 20.0% |
| !!! | CTATTTCTATATTTGAATAG+GGG | + | chr1.3:6173960-6173979 | MS.gene051593:intron | 20.0% |
| !!! | TAAGCTATTTCAATATTGTA+AGG | + | chr1.3:6173690-6173709 | MS.gene051593:intron | 20.0% |
| !!! | TAATTTTAGCATAAACTTAG+TGG | - | chr1.3:6174577-6174596 | None:intergenic | 20.0% |
| !!! | TTCATTTTTCTTAATTTGGA+TGG | + | chr1.3:6173168-6173187 | MS.gene051593:intron | 20.0% |
| !!! | TTTTGTAATTAATGTTTCCT+TGG | + | chr1.3:6175680-6175699 | MS.gene051593:intron | 20.0% |
| ! | AACTAAAATAAGTCAATCAG+GGG | - | chr1.3:6175385-6175404 | None:intergenic | 25.0% |
| ! | ACAGTAAATAAGTAACCTTA+TGG | - | chr1.3:6173311-6173330 | None:intergenic | 25.0% |
| ! | ACAGTAAATTCTATTATGAC+AGG | - | chr1.3:6173342-6173361 | None:intergenic | 25.0% |
| ! | ATAAAGAGAAAATGTTAAGG+TGG | + | chr1.3:6174230-6174249 | MS.gene051593:intron | 25.0% |
| ! | TAAAATTATGATCTGCTAGT+TGG | + | chr1.3:6174589-6174608 | MS.gene051593:intron | 25.0% |
| ! | TCTGAAGAAAAAAAACTAGT+GGG | - | chr1.3:6175151-6175170 | None:intergenic | 25.0% |
| ! | TTCATAAACAACACAAGTAA+AGG | - | chr1.3:6174471-6174490 | None:intergenic | 25.0% |
| ! | TTTGGCTAAAGAACTTAATT+AGG | + | chr1.3:6173619-6173638 | MS.gene051593:intron | 25.0% |
| !! | TATTCTATGGTGGAATTATA+GGG | + | chr1.3:6173432-6173451 | MS.gene051593:CDS | 25.0% |
| !! | TTCTGAAGAAAAAAAACTAG+TGG | - | chr1.3:6175152-6175171 | None:intergenic | 25.0% |
| !! | TTTTCATAAGATATCTTGGA+GGG | - | chr1.3:6175510-6175529 | None:intergenic | 25.0% |
| !!! | AAATTTCCCATTTTTAGTTG+TGG | + | chr1.3:6173243-6173262 | MS.gene051593:CDS | 25.0% |
| !!! | AATTTCCCATTTTTAGTTGT+GGG | + | chr1.3:6173244-6173263 | MS.gene051593:CDS | 25.0% |
| !!! | AGATATTGGTTTTCATCAAT+AGG | + | chr1.3:6174718-6174737 | MS.gene051593:CDS | 25.0% |
| !!! | TTACTTGTGTTGTTTATGAA+CGG | + | chr1.3:6174471-6174490 | MS.gene051593:CDS | 25.0% |
| !!! | TTTCTTAATTTGGATGGTTT+TGG | + | chr1.3:6173174-6173193 | MS.gene051593:intron | 25.0% |
| AAAACGAACTAAGTACTAAG+AGG | - | chr1.3:6174310-6174329 | None:intergenic | 30.0% | |
| AACCAAAAATTCCATCGAAT+AGG | - | chr1.3:6174991-6175010 | None:intergenic | 30.0% | |
| AAGCTTGAGACTATTATTAG+AGG | - | chr1.3:6174511-6174530 | None:intergenic | 30.0% | |
| AATAAGCTGATAATAGCTTG+TGG | + | chr1.3:6173839-6173858 | MS.gene051593:intron | 30.0% | |
| ACCAATGAGCTTCTTAATAA+AGG | - | chr1.3:6174337-6174356 | None:intergenic | 30.0% | |
| ACTATACTCACTCAAGATAT+TGG | + | chr1.3:6174704-6174723 | MS.gene051593:CDS | 30.0% | |
| AGCATCACACTAAGTAAAAA+CGG | - | chr1.3:6174926-6174945 | None:intergenic | 30.0% | |
| AGTTTGGTTATTGAGAGAAT+TGG | + | chr1.3:6174401-6174420 | MS.gene051593:CDS | 30.0% | |
| ATAAATGTTGCAAAAGTCTG+AGG | - | chr1.3:6174751-6174770 | None:intergenic | 30.0% | |
| ATATCTTGAGTGAGTATAGT+TGG | - | chr1.3:6174704-6174723 | None:intergenic | 30.0% | |
| ATGCTATAAGCACTTAATTG+TGG | + | chr1.3:6175621-6175640 | MS.gene051593:intron | 30.0% | |
| ATTATAGAAGAGAGCTTATG+TGG | - | chr1.3:6173999-6174018 | None:intergenic | 30.0% | |
| CAATGAGCTTCTTAATAAAG+GGG | - | chr1.3:6174335-6174354 | None:intergenic | 30.0% | |
| CCAATGAGCTTCTTAATAAA+GGG | - | chr1.3:6174336-6174355 | None:intergenic | 30.0% | |
| CCTATTCAAAAACCAATTCA+TGG | - | chr1.3:6175279-6175298 | None:intergenic | 30.0% | |
| GCAGAACTTATGATGATATT+CGG | + | chr1.3:6174614-6174633 | MS.gene051593:intron | 30.0% | |
| TATTGTTATCAGGCTTCAAA+TGG | - | chr1.3:6173481-6173500 | None:intergenic | 30.0% | |
| TGTGATTGGATTCTAATATG+AGG | + | chr1.3:6173359-6173378 | MS.gene051593:intron | 30.0% | |
| TTAAACAAATGGAGCAACTA+GGG | - | chr1.3:6174188-6174207 | None:intergenic | 30.0% | |
| TTCAGAATTGGAGTTTGAAT+TGG | + | chr1.3:6172933-6172952 | MS.gene051593:CDS | 30.0% | |
| TTCTTTAGCCAAAACAATCA+TGG | - | chr1.3:6173612-6173631 | None:intergenic | 30.0% | |
| TTGTGAAACCAAATTTCACA+AGG | - | chr1.3:6175014-6175033 | None:intergenic | 30.0% | |
| TTTAAACAAATGGAGCAACT+AGG | - | chr1.3:6174189-6174208 | None:intergenic | 30.0% | |
| ! | AACCTATTCGATGGAATTTT+TGG | + | chr1.3:6174986-6175005 | MS.gene051593:intron | 30.0% |
| ! | ATTTGAAGCCTGATAACAAT+AGG | + | chr1.3:6173480-6173499 | MS.gene051593:CDS | 30.0% |
| ! | ATTTTTACCTCACCATGAAT+TGG | + | chr1.3:6175264-6175283 | MS.gene051593:intron | 30.0% |
| ! | CTATTAGCACATGTTTGTTT+TGG | + | chr1.3:6175299-6175318 | MS.gene051593:intron | 30.0% |
| ! | CTATTCTATGGTGGAATTAT+AGG | + | chr1.3:6173431-6173450 | MS.gene051593:CDS | 30.0% |
| ! | GTTTTCATAAGATATCTTGG+AGG | - | chr1.3:6175511-6175530 | None:intergenic | 30.0% |
| ! | TGATAACGTAGTTATTTGCA+CGG | - | chr1.3:6174865-6174884 | None:intergenic | 30.0% |
| ! | TTAAGTTGTGTATCCAAACT+AGG | - | chr1.3:6173716-6173735 | None:intergenic | 30.0% |
| ! | TTCCTTTTCCATGATTGTTT+TGG | + | chr1.3:6173601-6173620 | MS.gene051593:intron | 30.0% |
| ! | TTCTAATATGAGGTGTGTTT+TGG | + | chr1.3:6173369-6173388 | MS.gene051593:intron | 30.0% |
| ! | TTTGAAGCCTGATAACAATA+GGG | + | chr1.3:6173481-6173500 | MS.gene051593:CDS | 30.0% |
| ! | TTTGGTTTCACAAATTGTTC+TGG | + | chr1.3:6175021-6175040 | MS.gene051593:intron | 30.0% |
| !! | TTTTGAAAACAGCTTGACTT+TGG | - | chr1.3:6173797-6173816 | None:intergenic | 30.0% |
| !!! | AAGGAGGATTTTTTACCATA+AGG | + | chr1.3:6173293-6173312 | MS.gene051593:CDS | 30.0% |
| !!! | AGTGTTTTAAAGGGCTTATT+TGG | - | chr1.3:6174165-6174184 | None:intergenic | 30.0% |
| !!! | CCATGAATTGGTTTTTGAAT+AGG | + | chr1.3:6175276-6175295 | MS.gene051593:intron | 30.0% |
| !!! | TTTTGGTTCCTTGTGAAATT+TGG | + | chr1.3:6175003-6175022 | MS.gene051593:intron | 30.0% |
| AACCAAACTAGAGAAAAGTG+AGG | - | chr1.3:6174390-6174409 | None:intergenic | 35.0% | |
| AGAACACCCACAACTAAAAA+TGG | - | chr1.3:6173253-6173272 | None:intergenic | 35.0% | |
| AGCCAAAACAATCATGGAAA+AGG | - | chr1.3:6173606-6173625 | None:intergenic | 35.0% | |
| AGCCTAGACAAACTAGAATT+TGG | - | chr1.3:6175182-6175201 | None:intergenic | 35.0% | |
| CAAATAACTACGTTATCAGC+GGG | + | chr1.3:6174867-6174886 | MS.gene051593:CDS | 35.0% | |
| CAATAACACTTGTGTGAGTT+TGG | - | chr1.3:6174126-6174145 | None:intergenic | 35.0% | |
| CAATATTGTAAGGCCTAGTT+TGG | + | chr1.3:6173700-6173719 | MS.gene051593:intron | 35.0% | |
| CCCTTTATTAAGAAGCTCAT+TGG | + | chr1.3:6174333-6174352 | MS.gene051593:intron | 35.0% | |
| CTATATTTGAATAGGGGATG+TGG | + | chr1.3:6173966-6173985 | MS.gene051593:intron | 35.0% | |
| GAACACCCACAACTAAAAAT+GGG | - | chr1.3:6173252-6173271 | None:intergenic | 35.0% | |
| GAATTGGAGTTTGAATTGGA+TGG | + | chr1.3:6172937-6172956 | MS.gene051593:CDS | 35.0% | |
| GCAAATAACTACGTTATCAG+CGG | + | chr1.3:6174866-6174885 | MS.gene051593:CDS | 35.0% | |
| GCATCACACTAAGTAAAAAC+GGG | - | chr1.3:6174925-6174944 | None:intergenic | 35.0% | |
| GTCTTGTGGATGTTTGAATT+TGG | - | chr1.3:6175093-6175112 | None:intergenic | 35.0% | |
| GTGATCACATTCAACGTATT+GGG | - | chr1.3:6173223-6173242 | None:intergenic | 35.0% | |
| TAGCTAAAGGAAGAATGAAC+TGG | - | chr1.3:6174654-6174673 | None:intergenic | 35.0% | |
| TCAAAAACCAATTCATGGTG+AGG | - | chr1.3:6175274-6175293 | None:intergenic | 35.0% | |
| TGTGATCACATTCAACGTAT+TGG | - | chr1.3:6173224-6173243 | None:intergenic | 35.0% | |
| ! | AAGCTCATTGGTTGTACTAA+TGG | + | chr1.3:6174345-6174364 | MS.gene051593:intron | 35.0% |
| ! | GCTTTGATCAAAATCGATTC+CGG | - | chr1.3:6175216-6175235 | None:intergenic | 35.0% |
| ! | TGATAACAATAGGGTCTTGT+GGG | + | chr1.3:6173490-6173509 | MS.gene051593:CDS | 35.0% |
| !! | AGCTGTTTTCAAAAGCTATC+TGG | + | chr1.3:6173803-6173822 | MS.gene051593:intron | 35.0% |
| !! | GAATTTGGAAAACTGACTTG+AGG | - | chr1.3:6175078-6175097 | None:intergenic | 35.0% |
| !! | TATTTGAAGCCTGACCTTTT+TGG | + | chr1.3:6174785-6174804 | MS.gene051593:intron | 35.0% |
| !! | TTCCTCACTTTTCTCTAGTT+TGG | + | chr1.3:6174385-6174404 | MS.gene051593:CDS | 35.0% |
| !! | TTGATGATGAACCTATTCGA+TGG | + | chr1.3:6174977-6174996 | MS.gene051593:intron | 35.0% |
| !! | TTTTTGAAGGACAGATGTTG+TGG | - | chr1.3:6175115-6175134 | None:intergenic | 35.0% |
| !!! | ATGAGGTGTGTTTTGGAATT+TGG | + | chr1.3:6173376-6173395 | MS.gene051593:intron | 35.0% |
| !!! | ATTTGGATGGTTTTGGTTTC+TGG | + | chr1.3:6173181-6173200 | MS.gene051593:intron | 35.0% |
| !!! | CAACTAGGGAGTGTTTTAAA+GGG | - | chr1.3:6174174-6174193 | None:intergenic | 35.0% |
| !!! | TTTGGATGGTTTTGGTTTCT+GGG | + | chr1.3:6173182-6173201 | MS.gene051593:intron | 35.0% |
| !!! | TTTTTAGTTGTGGGTGTTCT+TGG | + | chr1.3:6173253-6173272 | MS.gene051593:CDS | 35.0% |
| AAGTAAAGGCTGCAAAAAGG+AGG | - | chr1.3:6174457-6174476 | None:intergenic | 40.0% | |
| AGTAAAGGCTGCAAAAAGGA+GGG | - | chr1.3:6174456-6174475 | None:intergenic | 40.0% | |
| ATACATGCGTAGTGTCTTCT+CGG | - | chr1.3:6173937-6173956 | None:intergenic | 40.0% | |
| ATGTTTCCTTGGAAGAGCTT+TGG | + | chr1.3:6175691-6175710 | MS.gene051593:intron | 40.0% | |
| ATTGTGGAGAACAACGTTGA+AGG | + | chr1.3:6175637-6175656 | MS.gene051593:intron | 40.0% | |
| CACAAGACCCTATTGTTATC+AGG | - | chr1.3:6173491-6173510 | None:intergenic | 40.0% | |
| CACAAGTAAAGGCTGCAAAA+AGG | - | chr1.3:6174460-6174479 | None:intergenic | 40.0% | |
| CTGATAACAATAGGGTCTTG+TGG | + | chr1.3:6173489-6173508 | MS.gene051593:CDS | 40.0% | |
| CTTGAGTGAGTATAGTTGGA+GGG | - | chr1.3:6174700-6174719 | None:intergenic | 40.0% | |
| GCTTGGATACTATTCTATGG+TGG | + | chr1.3:6173422-6173441 | MS.gene051593:CDS | 40.0% | |
| GTTGTACTAATGGCAGATGA+TGG | + | chr1.3:6174355-6174374 | MS.gene051593:intron | 40.0% | |
| TAATGGGAATGCTAACCAAC+CGG | - | chr1.3:6173524-6173543 | None:intergenic | 40.0% | |
| TAGTGTGATGCTCATCTACA+GGG | + | chr1.3:6174934-6174953 | MS.gene051593:CDS | 40.0% | |
| TAGTTCTCAAGCAGAGACAT+GGG | + | chr1.3:6173400-6173419 | MS.gene051593:intron | 40.0% | |
| TCTTGAGTGAGTATAGTTGG+AGG | - | chr1.3:6174701-6174720 | None:intergenic | 40.0% | |
| TGGGCTTGGATACTATTCTA+TGG | + | chr1.3:6173419-6173438 | MS.gene051593:CDS | 40.0% | |
| TTAGTGTGATGCTCATCTAC+AGG | + | chr1.3:6174933-6174952 | MS.gene051593:CDS | 40.0% | |
| TTATTGAGAGAATTGGCCAG+CGG | + | chr1.3:6174408-6174427 | MS.gene051593:CDS | 40.0% | |
| TTTGGGAGAGAAGAGAAAGA+AGG | - | chr1.3:6173053-6173072 | None:intergenic | 40.0% | |
| ! | ACAGGGAGCGTAAGTTTAAA+AGG | + | chr1.3:6174951-6174970 | MS.gene051593:CDS | 40.0% |
| ! | GGACTCTCATATCTTGTTGT+TGG | + | chr1.3:6175712-6175731 | MS.gene051593:intron | 40.0% |
| ! | TGATCAAAATCGATTCCGGA+TGG | - | chr1.3:6175212-6175231 | None:intergenic | 40.0% |
| ! | TTAGTTCTCAAGCAGAGACA+TGG | + | chr1.3:6173399-6173418 | MS.gene051593:intron | 40.0% |
| ! | TTAGTTCTTGCTCTTGAAGG+AGG | + | chr1.3:6173277-6173296 | MS.gene051593:CDS | 40.0% |
| !! | CGCCAAATTCTAGTTTGTCT+AGG | + | chr1.3:6175177-6175196 | MS.gene051593:intron | 40.0% |
| !! | CTCATATCTTGTTGTTGGCT+TGG | + | chr1.3:6175717-6175736 | MS.gene051593:intron | 40.0% |
| !! | GGTTTAGTTCTTGCTCTTGA+AGG | + | chr1.3:6173274-6173293 | MS.gene051593:CDS | 40.0% |
| !!! | GCAACTAGGGAGTGTTTTAA+AGG | - | chr1.3:6174175-6174194 | None:intergenic | 40.0% |
| GATAAACCCCTGTGCCAAAA+AGG | - | chr1.3:6174802-6174821 | None:intergenic | 45.0% | |
| TACAACACATTCCAATCCGC+TGG | - | chr1.3:6174427-6174446 | None:intergenic | 45.0% | |
| TGATGCGAGCAGTGAGTTTA+TGG | + | chr1.3:6174031-6174050 | MS.gene051593:intron | 45.0% | |
| TTTGACCACAGCATGTGAGA+TGG | - | chr1.3:6175240-6175259 | None:intergenic | 45.0% | |
| ! | CTATGGTGGAATTATAGGGC+TGG | + | chr1.3:6173436-6173455 | MS.gene051593:CDS | 45.0% |
| ! | GTACTAATGGCAGATGATGG+TGG | + | chr1.3:6174358-6174377 | MS.gene051593:intron | 45.0% |
| !! | TGTTGGCTTGGTGACAGATT+AGG | + | chr1.3:6175729-6175748 | MS.gene051593:intron | 45.0% |
| !! | TTGGTTTCTGGGTTTTGCAC+AGG | + | chr1.3:6173193-6173212 | MS.gene051593:intron | 45.0% |
| !!! | GGAATTATAGGGCTGGCTTT+TGG | + | chr1.3:6173443-6173462 | MS.gene051593:CDS | 45.0% |
| AAGCTCCATCTCACATGCTG+TGG | + | chr1.3:6175232-6175251 | MS.gene051593:intron | 50.0% | |
| GAGAGTCCAAAGCTCTTCCA+AGG | - | chr1.3:6175700-6175719 | None:intergenic | 50.0% | |
| GATTGCGCAAGTCAGCGAAT+TGG | - | chr1.3:6173099-6173118 | None:intergenic | 50.0% | |
| GCAGCTGCTGCAATAGCTAA+AGG | - | chr1.3:6174667-6174686 | None:intergenic | 50.0% | |
| TCTAGGCTTTCGAGACCATC+CGG | + | chr1.3:6175194-6175213 | MS.gene051593:intron | 50.0% | |
| ! | GGACAGATGTTGTGGTCTTG+TGG | - | chr1.3:6175107-6175126 | None:intergenic | 50.0% |
| !! | AAGCCTGACCTTTTTGGCAC+AGG | + | chr1.3:6174791-6174810 | MS.gene051593:intron | 50.0% |
| !! | AGCCTGACCTTTTTGGCACA+GGG | + | chr1.3:6174792-6174811 | MS.gene051593:intron | 50.0% |
| !! | AGTGGGAGAGCGTGGAATTT+TGG | - | chr1.3:6173071-6173090 | None:intergenic | 50.0% |
| !! | GCTGACTTGCGCAATCTTCT+TGG | + | chr1.3:6173103-6173122 | MS.gene051593:CDS | 50.0% |
| !! | GTGGGAGAGCGTGGAATTTT+GGG | - | chr1.3:6173070-6173089 | None:intergenic | 50.0% |
| !! | TCAGCGAATTGGTGGTGAGT+GGG | - | chr1.3:6173088-6173107 | None:intergenic | 50.0% |
| ACCCCTGTGCCAAAAAGGTC+AGG | - | chr1.3:6174797-6174816 | None:intergenic | 55.0% | |
| CGTTATCAGCGGGCACTCTT+TGG | + | chr1.3:6174877-6174896 | MS.gene051593:CDS | 55.0% | |
| CTCAAGCAGAGACATGGGCT+TGG | + | chr1.3:6173405-6173424 | MS.gene051593:CDS | 55.0% | |
| GAGAGAATTGGCCAGCGGAT+TGG | + | chr1.3:6174413-6174432 | MS.gene051593:CDS | 55.0% | |
| TGCGCAAGTCAGCGAATTGG+TGG | - | chr1.3:6173096-6173115 | None:intergenic | 55.0% | |
| TTGTGGGACACTTTGCCGGT+TGG | + | chr1.3:6173506-6173525 | MS.gene051593:intron | 55.0% | |
| ! | GGTCTTGTGGGACACTTTGC+CGG | + | chr1.3:6173502-6173521 | MS.gene051593:CDS | 55.0% |
| !! | GCCTGACCTTTTTGGCACAG+GGG | + | chr1.3:6174793-6174812 | MS.gene051593:intron | 55.0% |
| !! | GTCAGCGAATTGGTGGTGAG+TGG | - | chr1.3:6173089-6173108 | None:intergenic | 55.0% |
| ! | TGGTGGTGAGTGGGAGAGCG+TGG | - | chr1.3:6173079-6173098 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 6172926 | 6175773 | 6172926 | ID=MS.gene051593 |
| chr1.3 | mRNA | 6172926 | 6175773 | 6172926 | ID=MS.gene051593.t1;Parent=MS.gene051593 |
| chr1.3 | exon | 6172926 | 6173124 | 6172926 | ID=MS.gene051593.t1.exon1;Parent=MS.gene051593.t1 |
| chr1.3 | CDS | 6172926 | 6173124 | 6172926 | ID=cds.MS.gene051593.t1;Parent=MS.gene051593.t1 |
| chr1.3 | exon | 6173215 | 6173314 | 6173215 | ID=MS.gene051593.t1.exon2;Parent=MS.gene051593.t1 |
| chr1.3 | CDS | 6173215 | 6173314 | 6173215 | ID=cds.MS.gene051593.t1;Parent=MS.gene051593.t1 |
| chr1.3 | exon | 6173403 | 6173523 | 6173403 | ID=MS.gene051593.t1.exon3;Parent=MS.gene051593.t1 |
| chr1.3 | CDS | 6173403 | 6173523 | 6173403 | ID=cds.MS.gene051593.t1;Parent=MS.gene051593.t1 |
| chr1.3 | exon | 6174371 | 6174492 | 6174371 | ID=MS.gene051593.t1.exon4;Parent=MS.gene051593.t1 |
| chr1.3 | CDS | 6174371 | 6174492 | 6174371 | ID=cds.MS.gene051593.t1;Parent=MS.gene051593.t1 |
| chr1.3 | exon | 6174618 | 6174739 | 6174618 | ID=MS.gene051593.t1.exon5;Parent=MS.gene051593.t1 |
| chr1.3 | CDS | 6174618 | 6174739 | 6174618 | ID=cds.MS.gene051593.t1;Parent=MS.gene051593.t1 |
| chr1.3 | exon | 6174813 | 6174972 | 6174813 | ID=MS.gene051593.t1.exon6;Parent=MS.gene051593.t1 |
| chr1.3 | CDS | 6174813 | 6174972 | 6174813 | ID=cds.MS.gene051593.t1;Parent=MS.gene051593.t1 |
| chr1.3 | exon | 6175746 | 6175773 | 6175746 | ID=MS.gene051593.t1.exon7;Parent=MS.gene051593.t1 |
| chr1.3 | CDS | 6175746 | 6175773 | 6175746 | ID=cds.MS.gene051593.t1;Parent=MS.gene051593.t1 |
| Gene Sequence |
| Protein sequence |
