Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051808.t1 | XP_013458432.1 | 97.8 | 223 | 5 | 0 | 1 | 223 | 81 | 303 | 1.60E-122 | 448.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051808.t1 | Q8RXP6 | 83.5 | 224 | 37 | 0 | 1 | 224 | 81 | 304 | 1.3e-107 | 390.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051808.t1 | A0A072UTS0 | 97.8 | 223 | 5 | 0 | 1 | 223 | 81 | 303 | 1.2e-122 | 448.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051808 | MS.gene24838 | 0.80883 | 2.55E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAATTACCATTTCCATTT+TGG | 0.116815 | 8.1:+6637350 | None:intergenic |
| TCCAATAAACCACTTCAAAA+AGG | 0.216497 | 8.1:+6637904 | None:intergenic |
| ACATCTAGAATAGTTGTATT+TGG | 0.232242 | 8.1:-6639756 | MS.gene051808:CDS |
| ACATTATGCGAACCATTTCT+AGG | 0.283186 | 8.1:+6640145 | None:intergenic |
| CTTGCAATCCAGAAAGAAAA+AGG | 0.302434 | 8.1:+6637566 | None:intergenic |
| CTCTTTGTTGAGTTTCCCAC+TGG | 0.386526 | 8.1:-6637475 | MS.gene051808:CDS |
| GTTTCCCACTGGCATGCATA+TGG | 0.396359 | 8.1:-6637464 | MS.gene051808:CDS |
| CTGGCATGCATATGGATACT+TGG | 0.401670 | 8.1:-6637456 | MS.gene051808:CDS |
| TATACCGGAGGTACCTTGTC+AGG | 0.404338 | 8.1:+6639687 | None:intergenic |
| GAAGACAGATCATCCCAAAA+TGG | 0.408555 | 8.1:-6637364 | MS.gene051808:CDS |
| CATATGGATACTTGGCTAGC+TGG | 0.425262 | 8.1:-6637448 | MS.gene051808:CDS |
| TGCGAACCATTTCTAGGCGA+TGG | 0.445466 | 8.1:+6640151 | None:intergenic |
| TCATTGTGCCCAGGCTGCAT+TGG | 0.452616 | 8.1:-6639808 | MS.gene051808:intron |
| AGATCATCCCAAAATGGAAA+TGG | 0.454293 | 8.1:-6637358 | MS.gene051808:intron |
| AGGAATTACTAAGGATGCTC+AGG | 0.455541 | 8.1:-6639908 | MS.gene051808:intron |
| TTGTATTTGGACGGTCACTT+GGG | 0.463552 | 8.1:-6639743 | MS.gene051808:CDS |
| AGGCAGCTGCTCGTAATAAT+CGG | 0.470365 | 8.1:-6637501 | MS.gene051808:CDS |
| GTTGTATTTGGACGGTCACT+TGG | 0.474806 | 8.1:-6639744 | MS.gene051808:CDS |
| TATTGCCCATCGCCTAGAAA+TGG | 0.484709 | 8.1:-6640157 | MS.gene051808:CDS |
| ACATCTATATTGGATATGGC+TGG | 0.485579 | 8.1:-6637938 | MS.gene051808:CDS |
| TTAGTAATTCCTTTCTGAGA+AGG | 0.488171 | 8.1:+6639919 | None:intergenic |
| TTCTGGATTGCAAGATGAGA+TGG | 0.490483 | 8.1:-6637557 | MS.gene051808:CDS |
| AGCATTTGCATATGTGATGC+GGG | 0.491858 | 8.1:+6637532 | None:intergenic |
| ACAACACAATTGAGTAGCTT+AGG | 0.501083 | 8.1:+6637863 | None:intergenic |
| ATTGGAGGTAGCGGTACAAA+AGG | 0.509368 | 8.1:-6637887 | MS.gene051808:CDS |
| TAGCTGGTGGTGATCAGTAC+TGG | 0.510693 | 8.1:-6637432 | MS.gene051808:CDS |
| TTCTCAGAAAGGAATTACTA+AGG | 0.516053 | 8.1:-6639917 | MS.gene051808:CDS |
| AAGTGGTTTATTGGAGGTAG+CGG | 0.532556 | 8.1:-6637896 | MS.gene051808:CDS |
| GCGAACCATTTCTAGGCGAT+GGG | 0.535013 | 8.1:+6640152 | None:intergenic |
| ATTGTGTTGTACGTTCTCCA+TGG | 0.540016 | 8.1:-6637850 | MS.gene051808:CDS |
| TGTATTTGGACGGTCACTTG+GGG | 0.549377 | 8.1:-6639742 | MS.gene051808:CDS |
| TTACAGTTACGGAGCAAGTG+AGG | 0.556183 | 8.1:-6639947 | MS.gene051808:intron |
| TATGCAAATGCTATATGCTA+AGG | 0.558462 | 8.1:-6637521 | MS.gene051808:CDS |
| TGGAGTACTATTGATGTCGT+TGG | 0.558709 | 8.1:-6637830 | MS.gene051808:CDS |
| TACAGTTACGGAGCAAGTGA+GGG | 0.572061 | 8.1:-6639946 | MS.gene051808:intron |
| CTAGAATAGTTGTATTTGGA+CGG | 0.588714 | 8.1:-6639752 | MS.gene051808:CDS |
| GAGGGCTATCCTTCTCAGAA+AGG | 0.590380 | 8.1:-6639928 | MS.gene051808:CDS |
| TACTATTGATGTCGTTGGAG+AGG | 0.596216 | 8.1:-6637825 | MS.gene051808:intron |
| CATTGGATCATCTTTCTCAG+AGG | 0.602275 | 8.1:-6639791 | MS.gene051808:CDS |
| TAGCATTTGCATATGTGATG+CGG | 0.615703 | 8.1:+6637531 | None:intergenic |
| ACGACATCAATAGTACTCCA+TGG | 0.623192 | 8.1:+6637833 | None:intergenic |
| ATACCGGAGGTACCTTGTCA+GGG | 0.654922 | 8.1:+6639688 | None:intergenic |
| AGTATCCATATGCATGCCAG+TGG | 0.658826 | 8.1:+6637459 | None:intergenic |
| GTATTTGGACGGTCACTTGG+GGG | 0.672252 | 8.1:-6639741 | MS.gene051808:CDS |
| AACAAGAAATAACCCTGACA+AGG | 0.674539 | 8.1:-6639700 | MS.gene051808:intron |
| GCATTTGCATATGTGATGCG+GGG | 0.677683 | 8.1:+6637533 | None:intergenic |
| GTATCCATATGCATGCCAGT+GGG | 0.683235 | 8.1:+6637460 | None:intergenic |
| ATGGATACTTGGCTAGCTGG+TGG | 0.693186 | 8.1:-6637445 | MS.gene051808:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAATTAAAACTAATTTA+GGG | - | chr8.1:6639383-6639402 | MS.gene051808:intron | 10.0% |
| !!! | ATTTTTGTTTTTAATTAATC+TGG | - | chr8.1:6639110-6639129 | MS.gene051808:intron | 10.0% |
| !!! | TTATTTTGAAAACAAAATAT+TGG | + | chr8.1:6639214-6639233 | None:intergenic | 10.0% |
| !!! | TTTGAAATTAAAACTAATTT+AGG | - | chr8.1:6639382-6639401 | MS.gene051808:intron | 10.0% |
| !! | TTAAAAAATATGTTCCTATT+AGG | - | chr8.1:6638191-6638210 | MS.gene051808:intron | 15.0% |
| !!! | ATTTTCTTGAAAAAACAAAA+TGG | + | chr8.1:6637202-6637221 | None:intergenic | 15.0% |
| !!! | TAATAGGAACATATTTTTTA+AGG | + | chr8.1:6638192-6638211 | None:intergenic | 15.0% |
| !!! | TATACAACTTTTGTATTTTT+TGG | - | chr8.1:6640269-6640288 | MS.gene051808:intron | 15.0% |
| !! | AGTAATGTCAATAACAATAA+TGG | + | chr8.1:6638878-6638897 | None:intergenic | 20.0% |
| !! | CAACAAAAATTGTAGATTAA+AGG | + | chr8.1:6639508-6639527 | None:intergenic | 20.0% |
| !! | CAATAATATACATAGTATAC+CGG | + | chr8.1:6637844-6637863 | None:intergenic | 20.0% |
| !! | CAATTAAACCAGTAATAAAA+AGG | + | chr8.1:6639910-6639929 | None:intergenic | 20.0% |
| !! | TATGAAAAATCAAAAGCTTA+AGG | + | chr8.1:6637456-6637475 | None:intergenic | 20.0% |
| !! | TATGTGTTGGAAAATTATAT+AGG | - | chr8.1:6638322-6638341 | MS.gene051808:intron | 20.0% |
| !! | TGAAGAAAATTCCAATAAAA+AGG | + | chr8.1:6637674-6637693 | None:intergenic | 20.0% |
| !! | TTGTAGATATTACAATGTTA+GGG | - | chr8.1:6637241-6637260 | MS.gene051808:intron | 20.0% |
| !!! | AAACACTTTTACATCTATAT+TGG | - | chr8.1:6639565-6639584 | MS.gene051808:intron | 20.0% |
| !!! | AGAATCTTATTTATGCTATA+CGG | + | chr8.1:6638433-6638452 | None:intergenic | 20.0% |
| !!! | ATAAATTACCATTTCCATTT+TGG | + | chr8.1:6640166-6640185 | None:intergenic | 20.0% |
| !!! | ATCATTTGATTTTACAGTTA+CGG | - | chr8.1:6637555-6637574 | MS.gene051808:CDS | 20.0% |
| !!! | TAAATTACCATTTCCATTTT+GGG | + | chr8.1:6640165-6640184 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTGTCTCTAGAA+AGG | - | chr8.1:6639861-6639880 | MS.gene051808:intron | 20.0% |
| !!! | TTTTACATCTATATTGGATA+TGG | - | chr8.1:6639571-6639590 | MS.gene051808:intron | 20.0% |
| ! | AAATCATAAGTTGTTGAAAG+AGG | + | chr8.1:6638958-6638977 | None:intergenic | 25.0% |
| ! | AACAAATCTACAATCCTAAT+AGG | + | chr8.1:6638208-6638227 | None:intergenic | 25.0% |
| ! | AATCAAAGAGCTATGAAAAT+AGG | - | chr8.1:6638535-6638554 | MS.gene051808:intron | 25.0% |
| ! | ATCAAAGAGCTATGAAAATA+GGG | - | chr8.1:6638536-6638555 | MS.gene051808:intron | 25.0% |
| ! | ATTAAAGGTTTACAACCATA+TGG | + | chr8.1:6639493-6639512 | None:intergenic | 25.0% |
| ! | CGGTATACTATGTATATTAT+TGG | - | chr8.1:6637842-6637861 | MS.gene051808:CDS | 25.0% |
| ! | CTTGGAGAAAAATAAATTGA+TGG | - | chr8.1:6637885-6637904 | MS.gene051808:CDS | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | + | chr8.1:6638588-6638607 | None:intergenic | 25.0% |
| ! | GTTGTAGATATTACAATGTT+AGG | - | chr8.1:6637240-6637259 | MS.gene051808:intron | 25.0% |
| ! | TATCTAAAAGTTAGTAGTCA+AGG | + | chr8.1:6637338-6637357 | None:intergenic | 25.0% |
| ! | TCTTGAAAAAACAAAATGGT+TGG | + | chr8.1:6637198-6637217 | None:intergenic | 25.0% |
| ! | TGTAGATATTACAATGTTAG+GGG | - | chr8.1:6637242-6637261 | MS.gene051808:intron | 25.0% |
| ! | TTATCTATCTTTACTTGATC+AGG | - | chr8.1:6637294-6637313 | MS.gene051808:intron | 25.0% |
| !! | AAATATTGGAGTCTATTTTC+AGG | + | chr8.1:6639200-6639219 | None:intergenic | 25.0% |
| !! | AATCTCTGTATTGTTATTCT+CGG | - | chr8.1:6639464-6639483 | MS.gene051808:intron | 25.0% |
| !! | ACATCTAGAATAGTTGTATT+TGG | - | chr8.1:6637757-6637776 | MS.gene051808:intron | 25.0% |
| !!! | AAAGAAAAGATTTTGATTCG+CGG | + | chr8.1:6639041-6639060 | None:intergenic | 25.0% |
| !!! | AACTTTTGTATTTTTTGGTG+TGG | - | chr8.1:6640274-6640293 | MS.gene051808:intron | 25.0% |
| !!! | TTGTTTTTTCAAGAAAATGC+TGG | - | chr8.1:6637204-6637223 | MS.gene051808:intron | 25.0% |
| AATAACAATACAGAGATTCC+TGG | + | chr8.1:6639462-6639481 | None:intergenic | 30.0% | |
| AATCCAGAAAGAAAAAGGAT+AGG | + | chr8.1:6639945-6639964 | None:intergenic | 30.0% | |
| ACACCATCAAATTTAATCTG+TGG | + | chr8.1:6639137-6639156 | None:intergenic | 30.0% | |
| ACCTTGGAAAACTAGAAATT+TGG | + | chr8.1:6638035-6638054 | None:intergenic | 30.0% | |
| ACTTACTAGCATTATTCTCT+TGG | - | chr8.1:6638403-6638422 | MS.gene051808:intron | 30.0% | |
| ATAAATAAGATTCTTCGCAC+AGG | - | chr8.1:6638439-6638458 | MS.gene051808:intron | 30.0% | |
| ATATTACAATGTTAGGGGTT+AGG | - | chr8.1:6637247-6637266 | MS.gene051808:intron | 30.0% | |
| ATGTCCTGTAAGAAAATGAA+CGG | + | chr8.1:6640317-6640336 | None:intergenic | 30.0% | |
| CAATTCCTTGAATAATAGCA+TGG | - | chr8.1:6638267-6638286 | MS.gene051808:intron | 30.0% | |
| CCAATAAACCACTTCAAAAA+GGG | + | chr8.1:6639611-6639630 | None:intergenic | 30.0% | |
| CTAGAATAGTTGTATTTGGA+CGG | - | chr8.1:6637761-6637780 | MS.gene051808:intron | 30.0% | |
| CTTACTAGCATTATTCTCTT+GGG | - | chr8.1:6638404-6638423 | MS.gene051808:intron | 30.0% | |
| GAAAAATAAAGGGCAGAATT+CGG | + | chr8.1:6639737-6639756 | None:intergenic | 30.0% | |
| GTTTCAAAACTGAAATGGAT+GGG | - | chr8.1:6640202-6640221 | MS.gene051808:intron | 30.0% | |
| TAATATACATAGTATACCGG+AGG | + | chr8.1:6637841-6637860 | None:intergenic | 30.0% | |
| TATGCAAATGCTATATGCTA+AGG | - | chr8.1:6639992-6640011 | MS.gene051808:intron | 30.0% | |
| TCCAATAAACCACTTCAAAA+AGG | + | chr8.1:6639612-6639631 | None:intergenic | 30.0% | |
| TCTTTCCATGCTATTATTCA+AGG | + | chr8.1:6638275-6638294 | None:intergenic | 30.0% | |
| TGTTTCAAAACTGAAATGGA+TGG | - | chr8.1:6640201-6640220 | MS.gene051808:intron | 30.0% | |
| TTCATATCCTTGTGTGTTAT+TGG | - | chr8.1:6637640-6637659 | MS.gene051808:intron | 30.0% | |
| TTCTCAGAAAGGAATTACTA+AGG | - | chr8.1:6637596-6637615 | MS.gene051808:intron | 30.0% | |
| TTGTAATATCTACAACAACC+AGG | + | chr8.1:6637236-6637255 | None:intergenic | 30.0% | |
| TTTCTTTGGATTCTCTCTTA+AGG | - | chr8.1:6639054-6639073 | MS.gene051808:intron | 30.0% | |
| ! | AATTTCTCTGAAAACACACA+TGG | - | chr8.1:6638819-6638838 | MS.gene051808:intron | 30.0% |
| ! | ATTTCTTCATGTAAAGCACT+TGG | + | chr8.1:6638802-6638821 | None:intergenic | 30.0% |
| ! | ATTTTTCATATACAGCACTC+TGG | - | chr8.1:6637466-6637485 | MS.gene051808:CDS | 30.0% |
| ! | CATTAAAGAGCACAAGTTAT+TGG | + | chr8.1:6638703-6638722 | None:intergenic | 30.0% |
| ! | GAGCATTACCTTTTTATTAC+TGG | - | chr8.1:6639899-6639918 | MS.gene051808:intron | 30.0% |
| ! | GCGAATCAAAATCTTTTCTT+TGG | - | chr8.1:6639040-6639059 | MS.gene051808:intron | 30.0% |
| ! | TATTGAGTGTGCCAATTTTA+TGG | - | chr8.1:6638146-6638165 | MS.gene051808:intron | 30.0% |
| ! | TCAGGTTCAATTTCTTTTGA+AGG | - | chr8.1:6637312-6637331 | MS.gene051808:intron | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | - | chr8.1:6638592-6638611 | MS.gene051808:intron | 30.0% |
| ! | TTAGTAATTCCTTTCTGAGA+AGG | + | chr8.1:6637597-6637616 | None:intergenic | 30.0% |
| ! | TTATTTTCCTTGCTTTGGTA+TGG | - | chr8.1:6639241-6639260 | MS.gene051808:intron | 30.0% |
| ! | TTTTCTTGCTTTCTTACAGA+GGG | - | chr8.1:6637412-6637431 | MS.gene051808:CDS | 30.0% |
| !! | AAATGGATGGGTTAAAAAAG+TGG | - | chr8.1:6640214-6640233 | MS.gene051808:intron | 30.0% |
| !! | TATTGAGTTGGATCCAAATA+TGG | - | chr8.1:6638572-6638591 | MS.gene051808:intron | 30.0% |
| !! | TGTTCCAAGCTTTCTTATTT+TGG | - | chr8.1:6639336-6639355 | MS.gene051808:intron | 30.0% |
| !! | TTTTGTTACCCTTTTTGAAG+TGG | - | chr8.1:6639600-6639619 | MS.gene051808:intron | 30.0% |
| !!! | TCCAAATTTCTAGTTTTCCA+AGG | - | chr8.1:6638031-6638050 | MS.gene051808:intron | 30.0% |
| !!! | TCCATTTCAGTTTTGAAACA+CGG | + | chr8.1:6640201-6640220 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGTGGTTTATTGG+AGG | - | chr8.1:6639611-6639630 | MS.gene051808:intron | 30.0% |
| AAAGAGCTATGAAAATAGGG+TGG | - | chr8.1:6638539-6638558 | MS.gene051808:intron | 35.0% | |
| AACAAGAAATAACCCTGACA+AGG | - | chr8.1:6637813-6637832 | MS.gene051808:intron | 35.0% | |
| ACAACACAATTGAGTAGCTT+AGG | + | chr8.1:6639653-6639672 | None:intergenic | 35.0% | |
| ACATCTATATTGGATATGGC+TGG | - | chr8.1:6639575-6639594 | MS.gene051808:intron | 35.0% | |
| ACATTATGCGAACCATTTCT+AGG | + | chr8.1:6637371-6637390 | None:intergenic | 35.0% | |
| ACCAAGTGAGCTATGAAAAT+AGG | - | chr8.1:6638726-6638745 | MS.gene051808:intron | 35.0% | |
| AGATCATCCCAAAATGGAAA+TGG | - | chr8.1:6640155-6640174 | MS.gene051808:CDS | 35.0% | |
| ATCTACAACAAGAGAAACCT+TGG | + | chr8.1:6638051-6638070 | None:intergenic | 35.0% | |
| CAGAGGAGCAGAAAAATAAA+GGG | + | chr8.1:6639747-6639766 | None:intergenic | 35.0% | |
| CCAAAACCAGCATACAAAAT+TGG | + | chr8.1:6638475-6638494 | None:intergenic | 35.0% | |
| CCAAAGCAAGGAAAATAATC+TGG | + | chr8.1:6639239-6639258 | None:intergenic | 35.0% | |
| CCAAGTGAGCTATGAAAATA+GGG | - | chr8.1:6638727-6638746 | MS.gene051808:intron | 35.0% | |
| CGAATAGTCAAAATGAAGAC+TGG | - | chr8.1:6639406-6639425 | MS.gene051808:intron | 35.0% | |
| CTAGCTACATATAATGCATG+CGG | + | chr8.1:6637970-6637989 | None:intergenic | 35.0% | |
| CTTGCAATCCAGAAAGAAAA+AGG | + | chr8.1:6639950-6639969 | None:intergenic | 35.0% | |
| GGACCACAGATTAAATTTGA+TGG | - | chr8.1:6639131-6639150 | MS.gene051808:intron | 35.0% | |
| GTTGCCAAAATAAGAAAGCT+TGG | + | chr8.1:6639343-6639362 | None:intergenic | 35.0% | |
| TAGCATTTGCATATGTGATG+CGG | + | chr8.1:6639985-6640004 | None:intergenic | 35.0% | |
| TCAGAGGAGCAGAAAAATAA+AGG | + | chr8.1:6639748-6639767 | None:intergenic | 35.0% | |
| TGATTAGGATTACGTCACTT+GGG | - | chr8.1:6639765-6639784 | MS.gene051808:CDS | 35.0% | |
| TGGAACAACAACAATAACGA+CGG | + | chr8.1:6638683-6638702 | None:intergenic | 35.0% | |
| TGTATCTTGCTTTCTTGTCT+TGG | - | chr8.1:6638986-6639005 | MS.gene051808:intron | 35.0% | |
| TGTCTTCAGACTATAAACCA+GGG | + | chr8.1:6637932-6637951 | None:intergenic | 35.0% | |
| TGTTATTCTCGGAAACCATA+TGG | - | chr8.1:6639475-6639494 | MS.gene051808:intron | 35.0% | |
| TGTTCATTGCTCTTATGTGT+TGG | - | chr8.1:6638309-6638328 | MS.gene051808:intron | 35.0% | |
| TTGCTATATGCCTTCACTTA+AGG | + | chr8.1:6637995-6638014 | None:intergenic | 35.0% | |
| ! | AAAGAAAATTTGCTCGAGGA+AGG | + | chr8.1:6638352-6638371 | None:intergenic | 35.0% |
| ! | AAGAAAATTTGCTCGAGGAA+GGG | + | chr8.1:6638351-6638370 | None:intergenic | 35.0% |
| ! | ATCAAAAGCTTAAGGTGTCA+AGG | + | chr8.1:6637448-6637467 | None:intergenic | 35.0% |
| ! | ATTTTCATAGCTCACTTGGT+GGG | + | chr8.1:6638726-6638745 | None:intergenic | 35.0% |
| ! | ATTTTTCTGCTCCTCTGATT+AGG | - | chr8.1:6639750-6639769 | MS.gene051808:CDS | 35.0% |
| ! | CCAGATTATTTTCCTTGCTT+TGG | - | chr8.1:6639236-6639255 | MS.gene051808:intron | 35.0% |
| ! | GTTTTCTTGCTTTCTTACAG+AGG | - | chr8.1:6637411-6637430 | MS.gene051808:CDS | 35.0% |
| ! | TATTTTCATAGCTCACTTGG+TGG | + | chr8.1:6638727-6638746 | None:intergenic | 35.0% |
| ! | TGACAAAGAAAATTTGCTCG+AGG | + | chr8.1:6638356-6638375 | None:intergenic | 35.0% |
| ! | TGGTCTTCAGACCTTTTTAT+TGG | - | chr8.1:6637660-6637679 | MS.gene051808:intron | 35.0% |
| ! | TGTTGACCTTTCTGCATTTT+AGG | - | chr8.1:6639523-6639542 | MS.gene051808:intron | 35.0% |
| ! | TTAAGTGAAGGCATATAGCA+AGG | - | chr8.1:6637994-6638013 | MS.gene051808:intron | 35.0% |
| ! | TTCAATTTTCATGCTGTGCT+TGG | - | chr8.1:6637867-6637886 | MS.gene051808:CDS | 35.0% |
| ! | TTGTCCGTTCATTTTCTTAC+AGG | - | chr8.1:6640310-6640329 | MS.gene051808:CDS | 35.0% |
| !! | TATTGGAGTCTATTTTCAGG+TGG | + | chr8.1:6639197-6639216 | None:intergenic | 35.0% |
| !!! | CCAATTTTGTATGCTGGTTT+TGG | - | chr8.1:6638472-6638491 | MS.gene051808:intron | 35.0% |
| !!! | CCCTTTTTGAAGTGGTTTAT+TGG | - | chr8.1:6639608-6639627 | MS.gene051808:intron | 35.0% |
| !!! | TTTTTAAGGCATGTGTAGCA+GGG | + | chr8.1:6638178-6638197 | None:intergenic | 35.0% |
| !!! | TTTTTTAAGGCATGTGTAGC+AGG | + | chr8.1:6638179-6638198 | None:intergenic | 35.0% |
| AAGTGGTTTATTGGAGGTAG+CGG | - | chr8.1:6639617-6639636 | MS.gene051808:intron | 40.0% | |
| ACGACATCAATAGTACTCCA+TGG | + | chr8.1:6639683-6639702 | None:intergenic | 40.0% | |
| AGCATTTGCATATGTGATGC+GGG | + | chr8.1:6639984-6640003 | None:intergenic | 40.0% | |
| AGGAATTACTAAGGATGCTC+AGG | - | chr8.1:6637605-6637624 | MS.gene051808:intron | 40.0% | |
| AGTCAAAATGAAGACTGGAC+TGG | - | chr8.1:6639411-6639430 | MS.gene051808:intron | 40.0% | |
| AGTGACGTAATCCTAATCAG+AGG | + | chr8.1:6639764-6639783 | None:intergenic | 40.0% | |
| ATGTCACCTTATGACTGAGT+TGG | - | chr8.1:6637520-6637539 | MS.gene051808:CDS | 40.0% | |
| ATTGTGTTGTACGTTCTCCA+TGG | - | chr8.1:6639663-6639682 | MS.gene051808:intron | 40.0% | |
| CAGCAACCTAAAATGCAGAA+AGG | + | chr8.1:6639532-6639551 | None:intergenic | 40.0% | |
| CATTGGATCATCTTTCTCAG+AGG | - | chr8.1:6637722-6637741 | MS.gene051808:intron | 40.0% | |
| CTGAAGACCAATAACACACA+AGG | + | chr8.1:6637650-6637669 | None:intergenic | 40.0% | |
| CTGATTAGGATTACGTCACT+TGG | - | chr8.1:6639764-6639783 | MS.gene051808:CDS | 40.0% | |
| CTGTCTTCAGACTATAAACC+AGG | + | chr8.1:6637933-6637952 | None:intergenic | 40.0% | |
| GAACTTTCCATACCAAAGCA+AGG | + | chr8.1:6639251-6639270 | None:intergenic | 40.0% | |
| GAAGACAGATCATCCCAAAA+TGG | - | chr8.1:6640149-6640168 | MS.gene051808:CDS | 40.0% | |
| GCCGTGTTTCAAAACTGAAA+TGG | - | chr8.1:6640197-6640216 | MS.gene051808:intron | 40.0% | |
| GTAGCTAGTTCCTTAAGTGA+AGG | - | chr8.1:6637982-6638001 | MS.gene051808:intron | 40.0% | |
| TACTATTGATGTCGTTGGAG+AGG | - | chr8.1:6639688-6639707 | MS.gene051808:intron | 40.0% | |
| TGGATCCAACTCAATAACGA+CGG | + | chr8.1:6638568-6638587 | None:intergenic | 40.0% | |
| TTAGAGCCAACTCAGTCATA+AGG | + | chr8.1:6637529-6637548 | None:intergenic | 40.0% | |
| TTCTGGATTGCAAGATGAGA+TGG | - | chr8.1:6639956-6639975 | MS.gene051808:intron | 40.0% | |
| TTCTGGTCAGAAATTTAGCC+AGG | - | chr8.1:6639441-6639460 | MS.gene051808:intron | 40.0% | |
| TTGTATTTGGACGGTCACTT+GGG | - | chr8.1:6637770-6637789 | MS.gene051808:intron | 40.0% | |
| TTTATTACCTCATTGTGCCC+AGG | - | chr8.1:6637696-6637715 | MS.gene051808:intron | 40.0% | |
| ! | AAAGGGCCAATTTTGTATGC+TGG | - | chr8.1:6638466-6638485 | MS.gene051808:intron | 40.0% |
| ! | ATTCTTCGCACAGGTTCTAA+AGG | - | chr8.1:6638448-6638467 | MS.gene051808:intron | 40.0% |
| ! | CAGCCTATCCTTTTTCTTTC+TGG | - | chr8.1:6639939-6639958 | MS.gene051808:CDS | 40.0% |
| ! | CCCTATTTTCATAGCTCACT+TGG | + | chr8.1:6638730-6638749 | None:intergenic | 40.0% |
| ! | CTTCATGTAAAGCACTTGGT+GGG | + | chr8.1:6638798-6638817 | None:intergenic | 40.0% |
| ! | TCTTCATGTAAAGCACTTGG+TGG | + | chr8.1:6638799-6638818 | None:intergenic | 40.0% |
| ! | TGGAGTACTATTGATGTCGT+TGG | - | chr8.1:6639683-6639702 | MS.gene051808:intron | 40.0% |
| !! | AGAAAATGCTGGAAGTATCC+TGG | - | chr8.1:6637215-6637234 | MS.gene051808:intron | 40.0% |
| !! | AGCTGAGGCTTTTAACTGTA+AGG | - | chr8.1:6639313-6639332 | MS.gene051808:intron | 40.0% |
| !! | GATCTGTCTTCGTTTTTCTC+TGG | + | chr8.1:6640140-6640159 | None:intergenic | 40.0% |
| !! | TTATGACTGAGTTGGCTCTA+AGG | - | chr8.1:6637528-6637547 | MS.gene051808:CDS | 40.0% |
| !! | TTCTTCGCACAGGTTCTAAA+GGG | - | chr8.1:6638449-6638468 | MS.gene051808:intron | 40.0% |
| !! | TTGCATTTAAGTTGTCTCCC+TGG | - | chr8.1:6637912-6637931 | MS.gene051808:CDS | 40.0% |
| !!! | CTATTTTCAGGTGGCTTCTA+AGG | + | chr8.1:6639188-6639207 | None:intergenic | 40.0% |
| !!! | CTTTCTGCATTTTAGGTTGC+TGG | - | chr8.1:6639530-6639549 | MS.gene051808:intron | 40.0% |
| !!! | GTTTTGGAGAAGTATTGGCA+TGG | - | chr8.1:6638488-6638507 | MS.gene051808:intron | 40.0% |
| !!! | TGCTGGTTTTGGAGAAGTAT+TGG | - | chr8.1:6638483-6638502 | MS.gene051808:intron | 40.0% |
| !!! | TTTTAAGGCATGTGTAGCAG+GGG | + | chr8.1:6638177-6638196 | None:intergenic | 40.0% |
| AAAGATGATCCAATGCAGCC+TGG | + | chr8.1:6637717-6637736 | None:intergenic | 45.0% | |
| AAGATGATCCAATGCAGCCT+GGG | + | chr8.1:6637716-6637735 | None:intergenic | 45.0% | |
| AAGGACAAGTTTGTGTGCGA+GGG | - | chr8.1:6639073-6639092 | MS.gene051808:intron | 45.0% | |
| AGGCAGCTGCTCGTAATAAT+CGG | - | chr8.1:6640012-6640031 | MS.gene051808:intron | 45.0% | |
| AGTATCCATATGCATGCCAG+TGG | + | chr8.1:6640057-6640076 | None:intergenic | 45.0% | |
| CATATGGATACTTGGCTAGC+TGG | - | chr8.1:6640065-6640084 | MS.gene051808:intron | 45.0% | |
| CTCAGTCATAAGGTGACATG+TGG | + | chr8.1:6637519-6637538 | None:intergenic | 45.0% | |
| CTCTTTGTTGAGTTTCCCAC+TGG | - | chr8.1:6640038-6640057 | MS.gene051808:intron | 45.0% | |
| CTGGCATGCATATGGATACT+TGG | - | chr8.1:6640057-6640076 | MS.gene051808:intron | 45.0% | |
| GCATTTGCATATGTGATGCG+GGG | + | chr8.1:6639983-6640002 | None:intergenic | 45.0% | |
| GGTTACCGTCGTTATTGAGT+TGG | - | chr8.1:6638560-6638579 | MS.gene051808:intron | 45.0% | |
| GTATCCATATGCATGCCAGT+GGG | + | chr8.1:6640056-6640075 | None:intergenic | 45.0% | |
| GTTGTATTTGGACGGTCACT+TGG | - | chr8.1:6637769-6637788 | MS.gene051808:intron | 45.0% | |
| TAAGGACAAGTTTGTGTGCG+AGG | - | chr8.1:6639072-6639091 | MS.gene051808:intron | 45.0% | |
| TACAGTTACGGAGCAAGTGA+GGG | - | chr8.1:6637567-6637586 | MS.gene051808:CDS | 45.0% | |
| TATTGCCCATCGCCTAGAAA+TGG | - | chr8.1:6637356-6637375 | MS.gene051808:intron | 45.0% | |
| TGAAGTGAGACTTCAAGCTG+AGG | - | chr8.1:6639298-6639317 | MS.gene051808:intron | 45.0% | |
| TGTATTTGGACGGTCACTTG+GGG | - | chr8.1:6637771-6637790 | MS.gene051808:intron | 45.0% | |
| TTACAGTTACGGAGCAAGTG+AGG | - | chr8.1:6637566-6637585 | MS.gene051808:CDS | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr8.1:6638641-6638660 | None:intergenic | 45.0% |
| ! | ATTGGAGGTAGCGGTACAAA+AGG | - | chr8.1:6639626-6639645 | MS.gene051808:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr8.1:6638642-6638661 | None:intergenic | 45.0% |
| ! | TTTAAGGCATGTGTAGCAGG+GGG | + | chr8.1:6638176-6638195 | None:intergenic | 45.0% |
| CAGGGGGAGAGCCATAAAAT+TGG | + | chr8.1:6638160-6638179 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr8.1:6638640-6638659 | MS.gene051808:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr8.1:6638637-6638656 | None:intergenic | 50.0% | |
| GAGGGCTATCCTTCTCAGAA+AGG | - | chr8.1:6637585-6637604 | MS.gene051808:intron | 50.0% | |
| GTATTTGGACGGTCACTTGG+GGG | - | chr8.1:6637772-6637791 | MS.gene051808:intron | 50.0% | |
| GTTTCCCACTGGCATGCATA+TGG | - | chr8.1:6640049-6640068 | MS.gene051808:intron | 50.0% | |
| TGATGTCGTTGGAGAGGTGA+GGG | - | chr8.1:6639694-6639713 | MS.gene051808:intron | 50.0% | |
| TTGATGTCGTTGGAGAGGTG+AGG | - | chr8.1:6639693-6639712 | MS.gene051808:intron | 50.0% | |
| ! | ATGGATACTTGGCTAGCTGG+TGG | - | chr8.1:6640068-6640087 | MS.gene051808:intron | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr8.1:6638643-6638662 | None:intergenic | 50.0% |
| ! | GCGAACCATTTCTAGGCGAT+GGG | + | chr8.1:6637364-6637383 | None:intergenic | 50.0% |
| ! | TAACCCTGACAAGGTACCTC+CGG | - | chr8.1:6637822-6637841 | MS.gene051808:intron | 50.0% |
| ! | TAGCTGGTGGTGATCAGTAC+TGG | - | chr8.1:6640081-6640100 | MS.gene051808:intron | 50.0% |
| ! | TGCGAACCATTTCTAGGCGA+TGG | + | chr8.1:6637365-6637384 | None:intergenic | 50.0% |
| !! | ATACCGGAGGTACCTTGTCA+GGG | + | chr8.1:6637828-6637847 | None:intergenic | 50.0% |
| !! | GTGAGGCTTCTAAAGTGAGC+AGG | + | chr8.1:6639166-6639185 | None:intergenic | 50.0% |
| !! | TATACCGGAGGTACCTTGTC+AGG | + | chr8.1:6637829-6637848 | None:intergenic | 50.0% |
| !! | TTCAGGTGGCTTCTAAGGTG+AGG | + | chr8.1:6639183-6639202 | None:intergenic | 50.0% |
| AATGCAGCCTGGGCACAATG+AGG | + | chr8.1:6637706-6637725 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr8.1:6638629-6638648 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr8.1:6638628-6638647 | MS.gene051808:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr8.1:6638635-6638654 | MS.gene051808:intron | 55.0% | |
| GTTGGAGAGGTGAGGGATGA+TGG | - | chr8.1:6639701-6639720 | MS.gene051808:CDS | 55.0% | |
| TCATTGTGCCCAGGCTGCAT+TGG | - | chr8.1:6637705-6637724 | MS.gene051808:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr8.1:6638629-6638648 | MS.gene051808:intron | 55.0% | |
| !! | ACTGGACTGGCGCAATCTTC+TGG | - | chr8.1:6639424-6639443 | MS.gene051808:intron | 55.0% |
| ! | CGGTCACTTGGGGGTGCAGT+TGG | - | chr8.1:6637781-6637800 | MS.gene051808:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 6637193 | 6640342 | 6637193 | ID=MS.gene051808 |
| chr8.1 | mRNA | 6637193 | 6640342 | 6637193 | ID=MS.gene051808.t1;Parent=MS.gene051808 |
| chr8.1 | exon | 6640307 | 6640342 | 6640307 | ID=MS.gene051808.t1.exon1;Parent=MS.gene051808.t1 |
| chr8.1 | CDS | 6640307 | 6640342 | 6640307 | ID=cds.MS.gene051808.t1;Parent=MS.gene051808.t1 |
| chr8.1 | exon | 6640102 | 6640180 | 6640102 | ID=MS.gene051808.t1.exon2;Parent=MS.gene051808.t1 |
| chr8.1 | CDS | 6640102 | 6640180 | 6640102 | ID=cds.MS.gene051808.t1;Parent=MS.gene051808.t1 |
| chr8.1 | exon | 6639909 | 6639963 | 6639909 | ID=MS.gene051808.t1.exon3;Parent=MS.gene051808.t1 |
| chr8.1 | CDS | 6639909 | 6639963 | 6639909 | ID=cds.MS.gene051808.t1;Parent=MS.gene051808.t1 |
| chr8.1 | exon | 6639701 | 6639817 | 6639701 | ID=MS.gene051808.t1.exon4;Parent=MS.gene051808.t1 |
| chr8.1 | CDS | 6639701 | 6639817 | 6639701 | ID=cds.MS.gene051808.t1;Parent=MS.gene051808.t1 |
| chr8.1 | exon | 6637826 | 6637990 | 6637826 | ID=MS.gene051808.t1.exon5;Parent=MS.gene051808.t1 |
| chr8.1 | CDS | 6637826 | 6637990 | 6637826 | ID=cds.MS.gene051808.t1;Parent=MS.gene051808.t1 |
| chr8.1 | exon | 6637359 | 6637602 | 6637359 | ID=MS.gene051808.t1.exon6;Parent=MS.gene051808.t1 |
| chr8.1 | CDS | 6637359 | 6637602 | 6637359 | ID=cds.MS.gene051808.t1;Parent=MS.gene051808.t1 |
| chr8.1 | exon | 6637193 | 6637203 | 6637193 | ID=MS.gene051808.t1.exon7;Parent=MS.gene051808.t1 |
| chr8.1 | CDS | 6637193 | 6637203 | 6637193 | ID=cds.MS.gene051808.t1;Parent=MS.gene051808.t1 |
| Gene Sequence |
| Protein sequence |
