AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051986

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051986.t1 MTR_2g099380 97.608 418 10 0 6 423 31 448 0.0 858
MS.gene051986.t1 MTR_4g068180 79.762 420 83 1 6 423 36 455 0.0 698
MS.gene051986.t1 MTR_2g099380 97.020 302 9 0 6 307 31 332 0.0 613
MS.gene051986.t1 MTR_4g114580 28.451 355 181 10 109 407 116 453 3.96e-28 115
MS.gene051986.t1 MTR_3g083840 26.608 342 182 9 109 394 88 416 3.02e-24 104
MS.gene051986.t1 MTR_8g085300 26.608 342 182 8 109 394 99 427 3.15e-21 95.9
MS.gene051986.t1 MTR_6g016590 25.449 334 174 11 82 391 31 313 1.02e-17 84.7
MS.gene051986.t1 MTR_5g098140 25.523 239 134 5 119 353 106 304 9.65e-16 79.0
MS.gene051986.t1 MTR_1g069705 26.103 272 142 11 111 347 60 307 1.05e-15 79.0
MS.gene051986.t1 MTR_4g115090 24.662 296 176 11 111 390 350 614 3.50e-15 78.2
MS.gene051986.t1 MTR_2g099185 26.818 220 117 6 177 391 356 536 4.34e-14 74.7
MS.gene051986.t1 MTR_2g099185 28.333 180 101 4 177 351 356 512 4.59e-14 74.3
MS.gene051986.t1 MTR_2g099185 28.333 180 101 4 177 351 361 517 4.93e-14 74.3
MS.gene051986.t1 MTR_1g067150 25.000 264 149 10 122 373 607 833 1.40e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051986.t1 AT2G30710 75.837 418 98 2 6 423 26 440 0.0 667
MS.gene051986.t1 AT1G04830 26.835 436 236 12 27 394 11 431 1.12e-28 117
MS.gene051986.t1 AT1G04830 26.835 436 236 12 27 394 11 431 1.30e-28 117
MS.gene051986.t1 AT4G13730 25.146 342 198 6 98 394 96 424 8.84e-23 100
MS.gene051986.t1 AT4G13730 24.646 353 197 7 98 394 96 435 1.34e-20 94.0
MS.gene051986.t1 AT3G02460 26.277 274 147 8 126 391 88 314 5.30e-18 85.5
MS.gene051986.t1 AT3G02460 26.277 274 147 8 126 391 88 314 7.20e-18 84.7
MS.gene051986.t1 AT1G04830 25.187 401 244 11 27 394 11 388 7.91e-18 85.5
MS.gene051986.t1 AT4G13730 24.841 314 167 7 98 355 96 396 9.70e-18 85.1
MS.gene051986.t1 AT5G15930 25.182 274 152 7 125 391 84 311 1.13e-17 84.3
MS.gene051986.t1 AT3G07890 26.667 240 130 7 119 353 109 307 1.11e-16 82.0
MS.gene051986.t1 AT3G07890 26.667 240 130 7 119 353 109 307 1.11e-16 82.0
MS.gene051986.t1 AT3G07890 26.667 240 130 7 119 353 109 307 1.11e-16 82.0
MS.gene051986.t1 AT3G07890 26.667 240 130 7 119 353 109 307 1.11e-16 82.0
MS.gene051986.t1 AT3G07890 26.667 240 130 7 119 353 109 307 1.11e-16 82.0
MS.gene051986.t1 AT2G43490 30.178 169 94 3 184 351 359 504 1.55e-15 79.3
MS.gene051986.t1 AT2G43490 30.178 169 94 3 184 351 355 500 1.71e-15 79.3
MS.gene051986.t1 AT2G43490 30.178 169 94 3 184 351 355 500 1.71e-15 79.3
MS.gene051986.t1 AT2G43490 30.178 169 94 3 184 351 359 504 1.71e-15 79.3
MS.gene051986.t1 AT2G43490 30.178 169 94 3 184 351 359 504 1.71e-15 79.3
MS.gene051986.t1 AT2G43490 30.178 169 94 3 184 351 359 504 1.71e-15 79.3
MS.gene051986.t1 AT2G43490 30.178 169 94 3 184 351 359 504 1.71e-15 79.3
MS.gene051986.t1 AT2G43490 30.178 169 94 3 184 351 359 504 1.84e-15 79.0
MS.gene051986.t1 AT3G02460 25.957 235 124 6 126 353 88 279 2.47e-15 76.6
MS.gene051986.t1 AT5G52580 25.140 358 219 13 53 390 300 628 4.44e-15 77.8
MS.gene051986.t1 AT5G52580 25.140 358 219 13 53 390 294 622 5.09e-15 77.8
MS.gene051986.t1 AT3G59570 31.361 169 92 4 184 351 363 508 6.04e-15 77.4
MS.gene051986.t1 AT3G59570 31.361 169 92 4 184 351 363 508 7.86e-15 77.0
MS.gene051986.t1 AT3G59570 31.361 169 92 4 184 351 363 508 8.84e-15 77.0
MS.gene051986.t1 AT3G02460 25.641 234 124 6 126 352 88 278 1.08e-14 74.7
MS.gene051986.t1 AT3G02460 24.900 249 137 6 126 367 88 293 1.18e-14 75.1
MS.gene051986.t1 AT5G52580 25.497 302 180 11 105 390 367 639 3.58e-14 75.1
MS.gene051986.t1 AT2G37290 25.658 304 176 9 60 354 248 510 4.80e-14 74.7
MS.gene051986.t1 AT2G37290 25.658 304 176 9 60 354 248 510 4.93e-14 74.7
MS.gene051986.t1 AT4G28550 25.581 172 101 4 183 351 166 313 2.79e-11 65.1

Find 110 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTCTGAGCGTTCCGTATC+AGG 0.228799 2.2:+3549347 None:intergenic
CCATCTTGTCACACGCCTTT+GGG 0.282740 2.2:-3547320 MS.gene051986:CDS
TCCATCTTGTCACACGCCTT+TGG 0.286854 2.2:-3547321 MS.gene051986:CDS
AAGACAAGCCTTTGAATTCC+TGG 0.289816 2.2:+3548261 None:intergenic
TACCACCCATGGAAGATTTC+CGG 0.302895 2.2:+3550498 None:intergenic
TCTGGAACCATGGTTATATT+AGG 0.309896 2.2:-3550431 MS.gene051986:intron
TTCCTATCAGAATACTTAGA+AGG 0.315927 2.2:-3548408 MS.gene051986:CDS
CACCAACTAATTCAGATAGA+AGG 0.337858 2.2:-3549433 MS.gene051986:CDS
TTCAAGCCATATGGAGAATC+AGG 0.344007 2.2:-3547571 MS.gene051986:CDS
CCCTGAACATATCCACTTGC+TGG 0.349458 2.2:+3548465 None:intergenic
GGTAGATCCGATAGATAATT+CGG 0.350997 2.2:-3550796 MS.gene051986:CDS
CTTCAGTTGGGTTCTCTACA+TGG 0.352778 2.2:+3550525 None:intergenic
TGTCTTTAAGTTGAAGGAAT+TGG 0.360423 2.2:-3548244 MS.gene051986:CDS
CCAGTCCCTGATTCTCCATA+TGG 0.362525 2.2:+3547565 None:intergenic
ATTTCTGAACTTGTGGTTGC+TGG 0.363338 2.2:+3549179 None:intergenic
GCAACATCAGGTACAGTTCT+TGG 0.375969 2.2:+3549208 None:intergenic
CTAAAGGGTCGTAGCATTCC+TGG 0.383114 2.2:-3550840 MS.gene051986:CDS
TCCAGCAAGTGGATATGTTC+AGG 0.385704 2.2:-3548466 MS.gene051986:CDS
GAGGCATTTAGGCAGCTAAA+TGG 0.395459 2.2:+3546535 None:intergenic
AAGGCTTGTCTTTAAGTTGA+AGG 0.402702 2.2:-3548250 MS.gene051986:CDS
GAATTGGTCAGGAGGATTGA+TGG 0.404086 2.2:-3548228 MS.gene051986:intron
CACAATGGAAGCAAGCCATT+TGG 0.405862 2.2:-3550584 MS.gene051986:CDS
AGTTCCTCATATAGTGATAC+TGG 0.414241 2.2:-3550747 MS.gene051986:CDS
AACACCTTCCAACTCAGAAC+TGG 0.415204 2.2:-3546629 MS.gene051986:CDS
TTCTTTGTCAAGGTTACTAA+AGG 0.415801 2.2:-3550856 MS.gene051986:intron
TCCCTTCTATCTGAATTAGT+TGG 0.425652 2.2:+3549431 None:intergenic
TTCTTCAATTTGCTTTCCGC+TGG 0.426482 2.2:-3547539 MS.gene051986:CDS
TAGAAGGGAGCATAGATAAC+TGG 0.429552 2.2:-3548392 MS.gene051986:CDS
TGCTTGTCAAAATTGCTTGA+TGG 0.434811 2.2:-3548312 MS.gene051986:CDS
AATATATACACAAGGAAGTC+AGG 0.439682 2.2:+3547268 None:intergenic
ACTCACCGTAAGAAGAAAAC+TGG 0.439969 2.2:+3547243 None:intergenic
TTCTCCATATGGCTTGAAAC+AGG 0.439984 2.2:+3547576 None:intergenic
TATCTATCGGATCTACCCTC+TGG 0.446012 2.2:+3550802 None:intergenic
TTAAGTTGAAGGAATTGGTC+AGG 0.452027 2.2:-3548239 MS.gene051986:CDS
ACTGTAGGACGCATATAATC+TGG 0.454179 2.2:+3549798 None:intergenic
AGATCCTGTTTCAAGCCATA+TGG 0.461315 2.2:-3547580 MS.gene051986:CDS
TCTGAGTTGGAAGGTGTTGA+AGG 0.469826 2.2:+3546634 None:intergenic
CTATCGTTGGTAGTTCCAAA+TGG 0.472101 2.2:+3550569 None:intergenic
AACTCAGAACTGGACTGATC+AGG 0.476523 2.2:-3546619 MS.gene051986:CDS
TCTTTGTCAAGGTTACTAAA+GGG 0.477125 2.2:-3550855 MS.gene051986:intron
CACTATATGAGGAACTCCTT+TGG 0.478396 2.2:+3550754 None:intergenic
GAGGAACTCCTTTGGTAAGT+TGG 0.479046 2.2:+3550762 None:intergenic
ATAAATTGCGTGAATTAGCT+TGG 0.481343 2.2:-3549830 MS.gene051986:CDS
CATCTTCTTCCAGGGCCATT+CGG 0.484264 2.2:-3548491 MS.gene051986:intron
TTCAGTTGGGTTCTCTACAT+GGG 0.488921 2.2:+3550526 None:intergenic
ATTTCCGGACTTCTTCAGTT+GGG 0.489184 2.2:+3550513 None:intergenic
AAGTTCACAAAGGTTCTCTC+TGG 0.491096 2.2:-3550449 MS.gene051986:CDS
CCCAAAGGCGTGTGACAAGA+TGG 0.496262 2.2:+3547320 None:intergenic
TCCTATCAGAATACTTAGAA+GGG 0.501199 2.2:-3548407 MS.gene051986:CDS
TGTGCCAGTATCACTATATG+AGG 0.509178 2.2:+3550743 None:intergenic
TCCAGTGATTTCTGAACTTG+TGG 0.509701 2.2:+3549172 None:intergenic
GTAGATCCGATAGATAATTC+GGG 0.510981 2.2:-3550795 MS.gene051986:CDS
TGATCAGTCCAGTTCTGAGT+TGG 0.511650 2.2:+3546621 None:intergenic
GATTTCCGGACTTCTTCAGT+TGG 0.513734 2.2:+3550512 None:intergenic
TGAGATCAGCATGCTTCGCC+AGG 0.514763 2.2:-3549324 MS.gene051986:intron
ATGTAGAGGCTGACTGCTAT+TGG 0.515608 2.2:-3548335 MS.gene051986:CDS
GTATTATGATATTCCTGATA+CGG 0.517822 2.2:-3549360 MS.gene051986:CDS
CCAGCAAGTGGATATGTTCA+GGG 0.518965 2.2:-3548465 MS.gene051986:CDS
TGCTGGAAGAATGCAACATC+AGG 0.522302 2.2:+3549196 None:intergenic
TCCCTTCTAAGTATTCTGAT+AGG 0.522873 2.2:+3548406 None:intergenic
TACAGTGTGGAGACTTCTCT+TGG 0.524492 2.2:-3549781 MS.gene051986:intron
CAAACCCTCAGAAATGTTCA+AGG 0.526816 2.2:-3551409 None:intergenic
AGAACCCAACTGAAGAAGTC+CGG 0.535528 2.2:-3550517 MS.gene051986:CDS
ATCTATCGGATCTACCCTCT+GGG 0.548642 2.2:+3550803 None:intergenic
ATCAGTAGTCCTACCACCCA+TGG 0.554168 2.2:+3550487 None:intergenic
AGAAGTCCGGAAATCTTCCA+TGG 0.554526 2.2:-3550504 MS.gene051986:CDS
TTGCTCAACCAGGAATTCAA+AGG 0.558227 2.2:-3548269 MS.gene051986:CDS
TACTCTCTCGTGCATTTATG+TGG 0.564315 2.2:-3546584 MS.gene051986:CDS
CATTACACATTTGCTCAACC+AGG 0.564692 2.2:-3548279 MS.gene051986:CDS
AAAGGTTCTCTCTGGAACCA+TGG 0.569589 2.2:-3550441 MS.gene051986:CDS
AGTTGGGTTCTCTACATGGG+AGG 0.571413 2.2:+3550529 None:intergenic
ACCAACTAATTCAGATAGAA+GGG 0.572533 2.2:-3549432 MS.gene051986:CDS
GCCATTCGGCATCCAGCAAG+TGG 0.577019 2.2:-3548477 MS.gene051986:CDS
CCATATGGAGAATCAGGGAC+TGG 0.579566 2.2:-3547565 MS.gene051986:CDS
ATACACAAGGAAGTCAGGTA+AGG 0.582696 2.2:+3547273 None:intergenic
TCGTGCAACTGAAACAATAG+AGG 0.583962 2.2:-3550715 MS.gene051986:intron
GTAAAATCTTATTGACCCAG+AGG 0.584370 2.2:-3550818 MS.gene051986:CDS
TACAGTTCTTGGACAATCAA+CGG 0.584447 2.2:+3549219 None:intergenic
ATTTAGGCAGCTAAATGGCT+AGG 0.588967 2.2:+3546540 None:intergenic
AGTTGAAGGAATTGGTCAGG+AGG 0.592078 2.2:-3548236 MS.gene051986:CDS
AAGGCGTGTGACAAGATGGA+AGG 0.595513 2.2:+3547324 None:intergenic
GGAAATCTTCCATGGGTGGT+AGG 0.596520 2.2:-3550496 MS.gene051986:CDS
TCCACTTGCTGGATGCCGAA+TGG 0.597438 2.2:+3548476 None:intergenic
ACCACAAGTTCAGAAATCAC+TGG 0.601882 2.2:-3549173 MS.gene051986:CDS
TATAAGCCCGAATTATCTAT+CGG 0.604731 2.2:+3550789 None:intergenic
GACTGATCAGGAACTCGAGA+TGG 0.605616 2.2:-3546607 MS.gene051986:CDS
TGGGACACATATCTAGCTGA+AGG 0.612669 2.2:-3547301 MS.gene051986:CDS
ACTAATTCAGATAGAAGGGA+GGG 0.621364 2.2:-3549428 MS.gene051986:CDS
CAGTCCAGTTCTGAGTTGGA+AGG 0.623870 2.2:+3546625 None:intergenic
CAGCTAGATATGTGTCCCAA+AGG 0.627022 2.2:+3547305 None:intergenic
AGATAAAATCTCTAATGTAG+AGG 0.630211 2.2:-3548349 MS.gene051986:CDS
TCAAGCCATATGGAGAATCA+GGG 0.631147 2.2:-3547570 MS.gene051986:CDS
GTCCGGAAATCTTCCATGGG+TGG 0.634104 2.2:-3550500 MS.gene051986:CDS
AGGCGTGTGACAAGATGGAA+GGG 0.635093 2.2:+3547325 None:intergenic
GAAGTCCGGAAATCTTCCAT+GGG 0.635178 2.2:-3550503 MS.gene051986:CDS
AAGTATACCTAATATAACCA+TGG 0.637927 2.2:+3550424 None:intergenic
TAAAATCTTATTGACCCAGA+GGG 0.642301 2.2:-3550817 MS.gene051986:CDS
AACTAATTCAGATAGAAGGG+AGG 0.643726 2.2:-3549429 MS.gene051986:CDS
AAACCCTCAGAAATGTTCAA+GGG 0.645133 2.2:-3551408 None:intergenic
AAGAGAAGTCTCCACACTGT+AGG 0.654955 2.2:+3549783 None:intergenic
TGGAGCGTATTCTTTACGCA+TGG 0.656098 2.2:-3549153 MS.gene051986:intron
TATACTCACCAACTTACCAA+AGG 0.657656 2.2:-3550770 MS.gene051986:CDS
CAGCAAGTGGATATGTTCAG+GGG 0.660340 2.2:-3548464 MS.gene051986:CDS
AAGAGTTATGAAGTTCACAA+AGG 0.667469 2.2:-3550459 MS.gene051986:CDS
ATTATATGCGTCCTACAGTG+TGG 0.667641 2.2:-3549794 MS.gene051986:CDS
AACTGGCAAATATATACACA+AGG 0.671598 2.2:+3547260 None:intergenic
TTGCGTGAATTAGCTTGGAG+TGG 0.688224 2.2:-3549825 MS.gene051986:CDS
TTAGAAGACAGTTGAACCAG+CGG 0.695324 2.2:+3547523 None:intergenic
ATACAGGAAGAAGTTCACAA+TGG 0.706853 2.2:-3550599 MS.gene051986:intron
CAACTGTCTTCTAATCCGCG+AGG 0.710013 2.2:-3547514 MS.gene051986:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTAAATAAATATTATTC+AGG + chr2.2:3548026-3548045 None:intergenic 10.0%
!!! AAAAAAATCAACTTTTTTAA+TGG + chr2.2:3546714-3546733 None:intergenic 10.0%
!!! AAAAAATCAACTTTTTTAAT+GGG + chr2.2:3546713-3546732 None:intergenic 10.0%
!!! ATTTTGAAAAAGAATAATTA+GGG - chr2.2:3548375-3548394 MS.gene051986:CDS 10.0%
!! AAACAAAACAAATTACTAAT+TGG + chr2.2:3547007-3547026 None:intergenic 15.0%
!! AAACAAATTACAATATAAAC+GGG + chr2.2:3550734-3550753 None:intergenic 15.0%
!! AAATATCAAGTTATTTAGAA+TGG + chr2.2:3547674-3547693 None:intergenic 15.0%
!! AAATGTATGTTTATATATCA+TGG - chr2.2:3549401-3549420 MS.gene051986:CDS 15.0%
!! AACAACACTATAATTAATAA+AGG - chr2.2:3550494-3550513 MS.gene051986:CDS 15.0%
!! ACAACACTATAATTAATAAA+GGG - chr2.2:3550495-3550514 MS.gene051986:CDS 15.0%
!! ACTAGAATGAAAATAATATA+AGG + chr2.2:3548838-3548857 None:intergenic 15.0%
!! ATATCTAAACAAATTATTGA+GGG - chr2.2:3548274-3548293 MS.gene051986:CDS 15.0%
!! CAAACAAATTACAATATAAA+CGG + chr2.2:3550735-3550754 None:intergenic 15.0%
!!! ATTTTACTATTCATATTTTG+TGG - chr2.2:3547248-3547267 MS.gene051986:intron 15.0%
!!! GATTTTGAAAAAGAATAATT+AGG - chr2.2:3548374-3548393 MS.gene051986:CDS 15.0%
!!! TTTTGAAAAAGAATAATTAG+GGG - chr2.2:3548376-3548395 MS.gene051986:CDS 15.0%
!! AAACAAATATGTTGAAACTT+AGG - chr2.2:3550276-3550295 MS.gene051986:intron 20.0%
!! AACAAATATGTTGAAACTTA+GGG - chr2.2:3550277-3550296 MS.gene051986:intron 20.0%
!! AACAACATATCAATTGTATA+AGG + chr2.2:3547063-3547082 None:intergenic 20.0%
!! ACAAACAAAATAAGTTAGTT+TGG + chr2.2:3550034-3550053 None:intergenic 20.0%
!! ACAAGTTTAACATTGAAAAA+TGG + chr2.2:3548050-3548069 None:intergenic 20.0%
!! ATAGTTAAGGATGAAAATTA+TGG + chr2.2:3548081-3548100 None:intergenic 20.0%
!! ATATACATTTATGAGACTTA+TGG - chr2.2:3547283-3547302 MS.gene051986:CDS 20.0%
!! ATTTATCTACAGAATAGTTA+AGG + chr2.2:3548094-3548113 None:intergenic 20.0%
!! GACTTAAAATGATTATCAAT+AGG + chr2.2:3548409-3548428 None:intergenic 20.0%
!! GATATCTAAACAAATTATTG+AGG - chr2.2:3548273-3548292 MS.gene051986:CDS 20.0%
!! TACATAACACAGTAATAAAT+TGG - chr2.2:3549293-3549312 MS.gene051986:intron 20.0%
!! TGATAAACTAATCAACAAAT+CGG + chr2.2:3546674-3546693 None:intergenic 20.0%
!! TTATCAATCAGTAAGATAAT+CGG + chr2.2:3549039-3549058 None:intergenic 20.0%
!!! AGTAGTTAATTTTTTAGTAG+TGG + chr2.2:3547910-3547929 None:intergenic 20.0%
!!! ATTCTTTATTTTTACTGTCT+AGG - chr2.2:3551123-3551142 MS.gene051986:intron 20.0%
!!! CGTTTATATTGTAATTTGTT+TGG - chr2.2:3550733-3550752 MS.gene051986:CDS 20.0%
!!! GAAAAGATAATATTTTTGCA+AGG + chr2.2:3546588-3546607 None:intergenic 20.0%
!!! GATAATCATTTTAAGTCAAT+AGG - chr2.2:3548412-3548431 MS.gene051986:CDS 20.0%
!!! GATTTTATCTGAAGATAAAT+CGG + chr2.2:3549579-3549598 None:intergenic 20.0%
!!! TAAATTTTTGTATGCATCTT+GGG - chr2.2:3549881-3549900 MS.gene051986:intron 20.0%
!!! TAACTCTTATATTTTCAGTA+TGG - chr2.2:3551154-3551173 MS.gene051986:intron 20.0%
!!! TATGTTTTAAGAAAAACAAC+AGG + chr2.2:3549752-3549771 None:intergenic 20.0%
!!! TGTTTTTAATTTACTATCGT+TGG + chr2.2:3547385-3547404 None:intergenic 20.0%
!!! TTAAATTTTTGTATGCATCT+TGG - chr2.2:3549880-3549899 MS.gene051986:intron 20.0%
!!! TTACTGATTGATAATATTGA+TGG - chr2.2:3549045-3549064 MS.gene051986:intron 20.0%
!!! TTTGTTGATTAGTTTATCAT+CGG - chr2.2:3546675-3546694 MS.gene051986:CDS 20.0%
!!! TTTTACTTCTCTAAAATTGA+GGG + chr2.2:3550126-3550145 None:intergenic 20.0%
!!! TTTTAGTCAATAATTAAGAG+TGG + chr2.2:3548654-3548673 None:intergenic 20.0%
! AAACTGATATATTGAAAGAG+AGG + chr2.2:3550066-3550085 None:intergenic 25.0%
! AACACAGTAATAAATTGGAT+TGG - chr2.2:3549298-3549317 MS.gene051986:intron 25.0%
! AAGTATACCTAATATAACCA+TGG + chr2.2:3547517-3547536 None:intergenic 25.0%
! AAGTATCATATGTAATTCTG+AGG - chr2.2:3547620-3547639 MS.gene051986:intron 25.0%
! AATTAAGAGTGGCATAATTA+AGG + chr2.2:3548643-3548662 None:intergenic 25.0%
! AATTTCACCCCTAAAAAAAT+GGG - chr2.2:3546610-3546629 MS.gene051986:CDS 25.0%
! ACATATGATACTTTCATAAC+TGG + chr2.2:3547613-3547632 None:intergenic 25.0%
! ACTCTTGAGATCTTTAATTA+TGG - chr2.2:3549345-3549364 MS.gene051986:CDS 25.0%
! AGATAAAATCTCTAATGTAG+AGG - chr2.2:3549589-3549608 MS.gene051986:intron 25.0%
! GATAAACTAATCAACAAATC+GGG + chr2.2:3546673-3546692 None:intergenic 25.0%
! GATAGGAAAACAACAAAAAA+TGG + chr2.2:3549518-3549537 None:intergenic 25.0%
! GATTATGATAAAGCAGTAAA+TGG + chr2.2:3547785-3547804 None:intergenic 25.0%
! GTATTATGATATTCCTGATA+CGG - chr2.2:3548578-3548597 MS.gene051986:intron 25.0%
! GTTTCAGAATTATTCTTTCA+TGG - chr2.2:3548300-3548319 MS.gene051986:CDS 25.0%
! TAATTTCACCCCTAAAAAAA+TGG - chr2.2:3546609-3546628 MS.gene051986:CDS 25.0%
! TCAAGAAGAAAAATTAACCA+TGG + chr2.2:3548454-3548473 None:intergenic 25.0%
! TGCTTATATGAAAAATGCAT+TGG - chr2.2:3548334-3548353 MS.gene051986:CDS 25.0%
! TTATGTACTTCAAATGCAAA+AGG + chr2.2:3549280-3549299 None:intergenic 25.0%
!! AATACTAGCATTTTACAGAA+TGG + chr2.2:3550877-3550896 None:intergenic 25.0%
!! ATTAGTTTATCATCGGATAT+AGG - chr2.2:3546682-3546701 MS.gene051986:CDS 25.0%
!! CTATTCATATTTTGTGGTTA+TGG - chr2.2:3547254-3547273 MS.gene051986:CDS 25.0%
!! TGTGTATTCTTGTTATACTT+TGG - chr2.2:3548249-3548268 MS.gene051986:CDS 25.0%
!! TTGACAATGAACAACATTTT+GGG + chr2.2:3547961-3547980 None:intergenic 25.0%
!! TTTCAGTAGCAGATTTTATT+TGG + chr2.2:3550324-3550343 None:intergenic 25.0%
!! TTTTTATTGAGGTCAAAAGA+TGG - chr2.2:3548874-3548893 MS.gene051986:intron 25.0%
!!! AAAGAATAATTAGGGGTATT+TGG - chr2.2:3548383-3548402 MS.gene051986:CDS 25.0%
!!! AGAAATTTGTTGAACTTGTA+AGG + chr2.2:3550467-3550486 None:intergenic 25.0%
!!! AGTTCAGATCAGAATTTTTT+AGG - chr2.2:3548223-3548242 MS.gene051986:intron 25.0%
!!! ATGATTTTTTCTTAGTGTTG+TGG - chr2.2:3546832-3546851 MS.gene051986:intron 25.0%
!!! CATTTTATTTTATGTCACCA+TGG + chr2.2:3550242-3550261 None:intergenic 25.0%
!!! GTTTTACTTCTCTAAAATTG+AGG + chr2.2:3550127-3550146 None:intergenic 25.0%
!!! TTGTTGTGGATTTTTTATTG+AGG - chr2.2:3548863-3548882 MS.gene051986:intron 25.0%
AACATTAGGGAATGCAAAAA+TGG + chr2.2:3549803-3549822 None:intergenic 30.0%
AACTGGCAAATATATACACA+AGG + chr2.2:3550681-3550700 None:intergenic 30.0%
AAGAGTTATGAAGTTCACAA+AGG - chr2.2:3547479-3547498 MS.gene051986:intron 30.0%
AATATATACACAAGGAAGTC+AGG + chr2.2:3550673-3550692 None:intergenic 30.0%
AATTGTTAAGAGCTGAAACA+GGG + chr2.2:3546911-3546930 None:intergenic 30.0%
ACACAGATCAGATGAAAATT+GGG + chr2.2:3546801-3546820 None:intergenic 30.0%
ACATTAGGGAATGCAAAAAT+GGG + chr2.2:3549802-3549821 None:intergenic 30.0%
ACCAACTAATTCAGATAGAA+GGG - chr2.2:3548506-3548525 MS.gene051986:intron 30.0%
AGATAATCGGAACAAAATCT+AGG + chr2.2:3549026-3549045 None:intergenic 30.0%
ATAAATTGCGTGAATTAGCT+TGG - chr2.2:3548108-3548127 MS.gene051986:intron 30.0%
ATCAGACATCACACTTAAAA+AGG + chr2.2:3550578-3550597 None:intergenic 30.0%
ATCCTGTCTTAAATAGTTAG+CGG - chr2.2:3548971-3548990 MS.gene051986:intron 30.0%
ATCTTGTAGTCAAGATGATA+AGG - chr2.2:3550766-3550785 MS.gene051986:CDS 30.0%
CTAAACAAATTATTGAGGGT+GGG - chr2.2:3548278-3548297 MS.gene051986:CDS 30.0%
CTATAACCTAACATGCTAAA+CGG + chr2.2:3551052-3551071 None:intergenic 30.0%
GTATGACACTATGAAATGAT+AGG - chr2.2:3549927-3549946 MS.gene051986:intron 30.0%
TAAAATCTTATTGACCCAGA+GGG - chr2.2:3547121-3547140 MS.gene051986:intron 30.0%
TAAGCAAAAAATAGTCGACA+AGG + chr2.2:3549379-3549398 None:intergenic 30.0%
TAATTGTTAAGAGCTGAAAC+AGG + chr2.2:3546912-3546931 None:intergenic 30.0%
TACACAGATCAGATGAAAAT+TGG + chr2.2:3546802-3546821 None:intergenic 30.0%
TATAACCTAACATGCTAAAC+GGG + chr2.2:3551051-3551070 None:intergenic 30.0%
TATAAGCCCGAATTATCTAT+CGG + chr2.2:3547152-3547171 None:intergenic 30.0%
TCCTATCAGAATACTTAGAA+GGG - chr2.2:3549531-3549550 MS.gene051986:intron 30.0%
TCTAAACAAATTATTGAGGG+TGG - chr2.2:3548277-3548296 MS.gene051986:CDS 30.0%
TCTGATCTGTGTAATCAAAT+TGG - chr2.2:3546809-3546828 MS.gene051986:intron 30.0%
TCTTTGTCAAGGTTACTAAA+GGG - chr2.2:3547083-3547102 MS.gene051986:intron 30.0%
TGTGGATATGAAATGAAATG+TGG - chr2.2:3546850-3546869 MS.gene051986:intron 30.0%
TTAAAGATGAACTGACAACA+GGG - chr2.2:3548477-3548496 MS.gene051986:CDS 30.0%
TTCCTATCAGAATACTTAGA+AGG - chr2.2:3549530-3549549 MS.gene051986:intron 30.0%
TTCTTTGTCAAGGTTACTAA+AGG - chr2.2:3547082-3547101 MS.gene051986:intron 30.0%
TTTAAAGATGAACTGACAAC+AGG - chr2.2:3548476-3548495 MS.gene051986:CDS 30.0%
TTTCTGATTGCTGTCAAAAT+TGG - chr2.2:3546953-3546972 MS.gene051986:intron 30.0%
! AAGCTTAATCCATTTCTAGA+AGG + chr2.2:3549088-3549107 None:intergenic 30.0%
! AATATAGCTTCTTGTTGTGA+TGG + chr2.2:3547887-3547906 None:intergenic 30.0%
! AGCTTAATCCATTTCTAGAA+GGG + chr2.2:3549087-3549106 None:intergenic 30.0%
! ATATAGCTTCTTGTTGTGAT+GGG + chr2.2:3547886-3547905 None:intergenic 30.0%
! ATTTGCCAGTTTTCTTCTTA+CGG - chr2.2:3550690-3550709 MS.gene051986:intron 30.0%
! CTGAATTTTTATGCTGAACT+AGG - chr2.2:3550987-3551006 MS.gene051986:intron 30.0%
! CTTGACAATGAACAACATTT+TGG + chr2.2:3547962-3547981 None:intergenic 30.0%
! GTTTTATGTGAACTTAGGTT+TGG - chr2.2:3547721-3547740 MS.gene051986:intron 30.0%
!! GATATGTTGTTTCTTTGTCA+AGG - chr2.2:3547072-3547091 MS.gene051986:intron 30.0%
!! TGTCTTTAAGTTGAAGGAAT+TGG - chr2.2:3549694-3549713 MS.gene051986:intron 30.0%
!!! CAATTGATATCTGCTTTTTC+AGG - chr2.2:3547814-3547833 MS.gene051986:intron 30.0%
!!! CTGAAATGCCCATTTTTTTA+GGG + chr2.2:3546621-3546640 None:intergenic 30.0%
!!! TGAAATGCCCATTTTTTTAG+GGG + chr2.2:3546620-3546639 None:intergenic 30.0%
!!! TTATTTTTACTGTCTAGGAG+AGG - chr2.2:3551128-3551147 MS.gene051986:intron 30.0%
AAATGATAGGTTGTCGTACA+AGG - chr2.2:3549940-3549959 MS.gene051986:intron 35.0%
AACTAATTCAGATAGAAGGG+AGG - chr2.2:3548509-3548528 MS.gene051986:intron 35.0%
AATGATAGGTTGTCGTACAA+GGG - chr2.2:3549941-3549960 MS.gene051986:intron 35.0%
ACAGATCAGATGAAAATTGG+GGG + chr2.2:3546799-3546818 None:intergenic 35.0%
ACCATGAAAGCAGTATCTAA+TGG + chr2.2:3550216-3550235 None:intergenic 35.0%
ACCATTAGATACTGCTTTCA+TGG - chr2.2:3550212-3550231 MS.gene051986:intron 35.0%
ACTAATTCAGATAGAAGGGA+GGG - chr2.2:3548510-3548529 MS.gene051986:intron 35.0%
AGAATGCCAAAAAACGAACA+AGG + chr2.2:3551108-3551127 None:intergenic 35.0%
AGTTCCTCATATAGTGATAC+TGG - chr2.2:3547191-3547210 MS.gene051986:intron 35.0%
ATACAGGAAGAAGTTCACAA+TGG - chr2.2:3547339-3547358 MS.gene051986:intron 35.0%
ATGGTTAGACAGGGTTTATA+AGG - chr2.2:3548914-3548933 MS.gene051986:intron 35.0%
CACAGATCAGATGAAAATTG+GGG + chr2.2:3546800-3546819 None:intergenic 35.0%
CACCAACTAATTCAGATAGA+AGG - chr2.2:3548505-3548524 MS.gene051986:intron 35.0%
CACTAAACCGTATAGACATA+CGG + chr2.2:3549854-3549873 None:intergenic 35.0%
CATTAGGGAATGCAAAAATG+GGG + chr2.2:3549801-3549820 None:intergenic 35.0%
CATTCTAGTGTTCTTTGTTG+TGG - chr2.2:3548849-3548868 MS.gene051986:intron 35.0%
CCAAATCCAAATGCAAAAGA+GGG + chr2.2:3549995-3550014 None:intergenic 35.0%
CCTAAAAAAATGGGCATTTC+AGG - chr2.2:3546619-3546638 MS.gene051986:CDS 35.0%
CTAAACGGGACCAATAAAAA+GGG + chr2.2:3551037-3551056 None:intergenic 35.0%
GAATGCCAAAAAACGAACAA+GGG + chr2.2:3551107-3551126 None:intergenic 35.0%
GATACTTTCATAACTGGAAG+AGG + chr2.2:3547607-3547626 None:intergenic 35.0%
GCAACGTGTTAGACTTATTA+TGG + chr2.2:3547652-3547671 None:intergenic 35.0%
GGGTTGTTCACATAACATTA+GGG + chr2.2:3549816-3549835 None:intergenic 35.0%
GGTAGATCCGATAGATAATT+CGG - chr2.2:3547142-3547161 MS.gene051986:intron 35.0%
GTAAAATCTTATTGACCCAG+AGG - chr2.2:3547120-3547139 MS.gene051986:intron 35.0%
GTAGATCCGATAGATAATTC+GGG - chr2.2:3547143-3547162 MS.gene051986:intron 35.0%
GTAGTCAAGATGATAAGGAA+TGG - chr2.2:3550771-3550790 MS.gene051986:CDS 35.0%
GTATGTCTATACGGTTTAGT+GGG - chr2.2:3549853-3549872 MS.gene051986:intron 35.0%
TAATATAAGGCCTGACAAAC+AGG + chr2.2:3548825-3548844 None:intergenic 35.0%
TACAGTTCTTGGACAATCAA+CGG + chr2.2:3548722-3548741 None:intergenic 35.0%
TATACTCACCAACTTACCAA+AGG - chr2.2:3547168-3547187 MS.gene051986:intron 35.0%
TCCAAATCCAAATGCAAAAG+AGG + chr2.2:3549996-3550015 None:intergenic 35.0%
TCCCTTCTAAGTATTCTGAT+AGG + chr2.2:3549535-3549554 None:intergenic 35.0%
TCCCTTCTATCTGAATTAGT+TGG + chr2.2:3548510-3548529 None:intergenic 35.0%
TGCTTGTCAAAATTGCTTGA+TGG - chr2.2:3549626-3549645 MS.gene051986:intron 35.0%
TGGACTGAACAAATTTGACA+CGG - chr2.2:3550544-3550563 MS.gene051986:CDS 35.0%
TGGGTTGTTCACATAACATT+AGG + chr2.2:3549817-3549836 None:intergenic 35.0%
TGGTAGATTTCAGTAAACGA+CGG - chr2.2:3550825-3550844 MS.gene051986:CDS 35.0%
! AACATTTTGGGCCAAAATCA+AGG + chr2.2:3547949-3547968 None:intergenic 35.0%
! ACATTTTGGGCCAAAATCAA+GGG + chr2.2:3547948-3547967 None:intergenic 35.0%
! ATACTTCTGTTTCTTCCTAG+CGG - chr2.2:3549181-3549200 MS.gene051986:CDS 35.0%
! ATCAAAGTGTTCAACTCAGA+TGG - chr2.2:3550904-3550923 MS.gene051986:intron 35.0%
! ATCCGCTAACTATTTAAGAC+AGG + chr2.2:3548976-3548995 None:intergenic 35.0%
! CTAAAATTGAGGGCATGTAA+TGG + chr2.2:3550116-3550135 None:intergenic 35.0%
! GTCATACTCACATTTTCTCT+AGG + chr2.2:3549914-3549933 None:intergenic 35.0%
! GTCTCACATACCCTTTTTAT+TGG - chr2.2:3551024-3551043 MS.gene051986:intron 35.0%
! GTCTTTCATTCCCTTGATTT+TGG - chr2.2:3547935-3547954 MS.gene051986:intron 35.0%
! TAGTTTCTTTTCCTACGTCA+TGG + chr2.2:3549217-3549236 None:intergenic 35.0%
! TCAAAGTGTTCAACTCAGAT+GGG - chr2.2:3550905-3550924 MS.gene051986:intron 35.0%
! TCTGGAACCATGGTTATATT+AGG - chr2.2:3547507-3547526 MS.gene051986:intron 35.0%
! TGGGTCAATAAGATTTTACC+AGG + chr2.2:3547119-3547138 None:intergenic 35.0%
! TGTAGATTCCCTTCTAGAAA+TGG - chr2.2:3549076-3549095 MS.gene051986:intron 35.0%
!! AAGGCTTGTCTTTAAGTTGA+AGG - chr2.2:3549688-3549707 MS.gene051986:intron 35.0%
!! GTCGAGTTTTATGTGAACTT+AGG - chr2.2:3547716-3547735 MS.gene051986:intron 35.0%
!! TTAAGTTGAAGGAATTGGTC+AGG - chr2.2:3549699-3549718 MS.gene051986:intron 35.0%
!! TTGATGGTAACCTTTTTCTC+TGG - chr2.2:3549726-3549745 MS.gene051986:intron 35.0%
!!! ATCTATCGTCGTTTTTTCAG+TGG - chr2.2:3551237-3551256 MS.gene051986:intron 35.0%
!!! CCTGAAATGCCCATTTTTTT+AGG + chr2.2:3546622-3546641 None:intergenic 35.0%
!!! GGATTTTAGTTCGAGTAAGA+TGG - chr2.2:3548895-3548914 MS.gene051986:intron 35.0%
AAAAATCAGTGCAAACCTCG+CGG + chr2.2:3550442-3550461 None:intergenic 40.0%
AAACAACAGGCCAGAGAAAA+AGG + chr2.2:3549739-3549758 None:intergenic 40.0%
AACCACACCGTATGTCTATA+CGG - chr2.2:3549844-3549863 MS.gene051986:intron 40.0%
AAGACAAGCCTTTGAATTCC+TGG + chr2.2:3549680-3549699 None:intergenic 40.0%
AAGTTCACAAAGGTTCTCTC+TGG - chr2.2:3547489-3547508 MS.gene051986:intron 40.0%
ACCACAAGTTCAGAAATCAC+TGG - chr2.2:3548765-3548784 MS.gene051986:intron 40.0%
ACTCACCGTAAGAAGAAAAC+TGG + chr2.2:3550698-3550717 None:intergenic 40.0%
ACTGTAGGACGCATATAATC+TGG + chr2.2:3548143-3548162 None:intergenic 40.0%
AGATCCTGTTTCAAGCCATA+TGG - chr2.2:3550358-3550377 MS.gene051986:intron 40.0%
ATAACTGGAAGAGGTCACTT+AGG + chr2.2:3547598-3547617 None:intergenic 40.0%
ATACACAAGGAAGTCAGGTA+AGG + chr2.2:3550668-3550687 None:intergenic 40.0%
ATACGGTGTGGTTGTTGAAA+TGG + chr2.2:3549837-3549856 None:intergenic 40.0%
ATATGGCTTGAAACAGGATC+TGG + chr2.2:3550359-3550378 None:intergenic 40.0%
ATTATATGCGTCCTACAGTG+TGG - chr2.2:3548144-3548163 MS.gene051986:intron 40.0%
ATTTCCGGACTTCTTCAGTT+GGG + chr2.2:3547428-3547447 None:intergenic 40.0%
ATTTCTGAACTTGTGGTTGC+TGG + chr2.2:3548762-3548781 None:intergenic 40.0%
CACTATATGAGGAACTCCTT+TGG + chr2.2:3547187-3547206 None:intergenic 40.0%
CATTACACATTTGCTCAACC+AGG - chr2.2:3549659-3549678 MS.gene051986:intron 40.0%
CCAAAAAACGAACAAGGGTA+AGG + chr2.2:3551102-3551121 None:intergenic 40.0%
CGTATGTCTATACGGTTTAG+TGG - chr2.2:3549852-3549871 MS.gene051986:intron 40.0%
GATAACCTCATCTTCTTCCA+GGG - chr2.2:3549439-3549458 MS.gene051986:CDS 40.0%
GCAAAAAATAGTCGACAAGG+AGG + chr2.2:3549376-3549395 None:intergenic 40.0%
GCTAAACGGGACCAATAAAA+AGG + chr2.2:3551038-3551057 None:intergenic 40.0%
GTGACTTCTGCTCTTAATAC+AGG - chr2.2:3547323-3547342 MS.gene051986:CDS 40.0%
GTGGCATAATTAAGGATACC+TGG + chr2.2:3548635-3548654 None:intergenic 40.0%
GTTAGACAGGGTTTATAAGG+CGG - chr2.2:3548917-3548936 MS.gene051986:intron 40.0%
GTTGCAATCTATGCTTGAGA+TGG - chr2.2:3549320-3549339 MS.gene051986:intron 40.0%
GTTTACTGAAATCTACCAGC+CGG + chr2.2:3550823-3550842 None:intergenic 40.0%
TACGGTGTGGTTGTTGAAAT+GGG + chr2.2:3549836-3549855 None:intergenic 40.0%
TACTCTCTCGTGCATTTATG+TGG - chr2.2:3551354-3551373 MS.gene051986:intron 40.0%
TCAAGCCATATGGAGAATCA+GGG - chr2.2:3550368-3550387 MS.gene051986:intron 40.0%
TCCAGTGATTTCTGAACTTG+TGG + chr2.2:3548769-3548788 None:intergenic 40.0%
TCGAGTAAGATGGTTAGACA+GGG - chr2.2:3548905-3548924 MS.gene051986:intron 40.0%
TCGTGCAACTGAAACAATAG+AGG - chr2.2:3547223-3547242 MS.gene051986:intron 40.0%
TGATAACCTCATCTTCTTCC+AGG - chr2.2:3549438-3549457 MS.gene051986:CDS 40.0%
TGTGCCAGTATCACTATATG+AGG + chr2.2:3547198-3547217 None:intergenic 40.0%
TTACAGATGACCTGTTTGTC+AGG - chr2.2:3548812-3548831 MS.gene051986:intron 40.0%
TTAGAAGACAGTTGAACCAG+CGG + chr2.2:3550418-3550437 None:intergenic 40.0%
TTAGACAGGGTTTATAAGGC+GGG - chr2.2:3548918-3548937 MS.gene051986:intron 40.0%
TTCAAGCCATATGGAGAATC+AGG - chr2.2:3550367-3550386 MS.gene051986:intron 40.0%
TTCAGTTGGGTTCTCTACAT+GGG + chr2.2:3547415-3547434 None:intergenic 40.0%
TTCGAGTAAGATGGTTAGAC+AGG - chr2.2:3548904-3548923 MS.gene051986:intron 40.0%
TTCTCCATATGGCTTGAAAC+AGG + chr2.2:3550365-3550384 None:intergenic 40.0%
TTGCTCAACCAGGAATTCAA+AGG - chr2.2:3549669-3549688 MS.gene051986:intron 40.0%
! AAAAAGGGTATGTGAGACTG+TGG + chr2.2:3551022-3551041 None:intergenic 40.0%
! ACTGCTTTCATGGTTTTCCA+TGG - chr2.2:3550222-3550241 MS.gene051986:intron 40.0%
! CCCTCTTTTGCATTTGGATT+TGG - chr2.2:3549992-3550011 MS.gene051986:intron 40.0%
! GTCAACGTCATGATTTTCCA+TGG - chr2.2:3548434-3548453 MS.gene051986:CDS 40.0%
! TAACAGCCCTCTTTTGCATT+TGG - chr2.2:3549986-3550005 MS.gene051986:intron 40.0%
! TAGAAGCATGTAAGACAGTG+TGG - chr2.2:3549108-3549127 MS.gene051986:intron 40.0%
! TAGAAGGGAGCATAGATAAC+TGG - chr2.2:3549546-3549565 MS.gene051986:intron 40.0%
! TTCTTCAATTTGCTTTCCGC+TGG - chr2.2:3550399-3550418 MS.gene051986:intron 40.0%
!! CTATCGTTGGTAGTTCCAAA+TGG + chr2.2:3547372-3547391 None:intergenic 40.0%
!!! CCTTACCCTTGTTCGTTTTT+TGG - chr2.2:3551099-3551118 MS.gene051986:intron 40.0%
!!! CGTACAAGGGTGTCTATTTT+GGG - chr2.2:3549954-3549973 MS.gene051986:intron 40.0%
!!! TCGTACAAGGGTGTCTATTT+TGG - chr2.2:3549953-3549972 MS.gene051986:intron 40.0%
AACACCTTCCAACTCAGAAC+TGG - chr2.2:3551309-3551328 MS.gene051986:intron 45.0%
AACCGTATAGACATACGGTG+TGG + chr2.2:3549849-3549868 None:intergenic 45.0%
AACTCAGAACTGGACTGATC+AGG - chr2.2:3551319-3551338 MS.gene051986:intron 45.0%
AAGAGAAGTCTCCACACTGT+AGG + chr2.2:3548158-3548177 None:intergenic 45.0%
AGAACCCAACTGAAGAAGTC+CGG - chr2.2:3547421-3547440 MS.gene051986:intron 45.0%
AGAAGTCCGGAAATCTTCCA+TGG - chr2.2:3547434-3547453 MS.gene051986:intron 45.0%
AGTGTTCAACTCAGATGGGA+TGG - chr2.2:3550909-3550928 MS.gene051986:intron 45.0%
AGTTGAAGGAATTGGTCAGG+AGG - chr2.2:3549702-3549721 MS.gene051986:intron 45.0%
ATCTATCGGATCTACCCTCT+GGG + chr2.2:3547138-3547157 None:intergenic 45.0%
ATGTAGAGGCTGACTGCTAT+TGG - chr2.2:3549603-3549622 MS.gene051986:intron 45.0%
CACAATGGAAGCAAGCCATT+TGG - chr2.2:3547354-3547373 MS.gene051986:intron 45.0%
CAGCAAGTGGATATGTTCAG+GGG - chr2.2:3549474-3549493 MS.gene051986:intron 45.0%
CAGCTAGATATGTGTCCCAA+AGG + chr2.2:3550636-3550655 None:intergenic 45.0%
CCAGCAAGTGGATATGTTCA+GGG - chr2.2:3549473-3549492 MS.gene051986:intron 45.0%
CTTCAGTTGGGTTCTCTACA+TGG + chr2.2:3547416-3547435 None:intergenic 45.0%
GAAGTCCGGAAATCTTCCAT+GGG - chr2.2:3547435-3547454 MS.gene051986:intron 45.0%
GAATTGGTCAGGAGGATTGA+TGG - chr2.2:3549710-3549729 MS.gene051986:intron 45.0%
GAGGAACTCCTTTGGTAAGT+TGG + chr2.2:3547179-3547198 None:intergenic 45.0%
GATTTCCGGACTTCTTCAGT+TGG + chr2.2:3547429-3547448 None:intergenic 45.0%
GCAACATCAGGTACAGTTCT+TGG + chr2.2:3548733-3548752 None:intergenic 45.0%
TACAGTGTGGAGACTTCTCT+TGG - chr2.2:3548157-3548176 MS.gene051986:intron 45.0%
TACCACCCATGGAAGATTTC+CGG + chr2.2:3547443-3547462 None:intergenic 45.0%
TATCTATCGGATCTACCCTC+TGG + chr2.2:3547139-3547158 None:intergenic 45.0%
TCCAGCAAGTGGATATGTTC+AGG - chr2.2:3549472-3549491 MS.gene051986:intron 45.0%
TGCTGGAAGAATGCAACATC+AGG + chr2.2:3548745-3548764 None:intergenic 45.0%
TGGAGCGTATTCTTTACGCA+TGG - chr2.2:3548785-3548804 MS.gene051986:intron 45.0%
TGGGACACATATCTAGCTGA+AGG - chr2.2:3550637-3550656 MS.gene051986:intron 45.0%
TTGGTCCCGTTTAGCATGTT+AGG - chr2.2:3551043-3551062 MS.gene051986:intron 45.0%
! GACGGTACAAACGTTTTCTG+TGG - chr2.2:3550843-3550862 MS.gene051986:CDS 45.0%
! TTGCGTGAATTAGCTTGGAG+TGG - chr2.2:3548113-3548132 MS.gene051986:intron 45.0%
!! AAAGGTTCTCTCTGGAACCA+TGG - chr2.2:3547497-3547516 MS.gene051986:intron 45.0%
!! GAGAGCATTGATGAAGACTG+AGG + chr2.2:3550170-3550189 None:intergenic 45.0%
!! TCTGAGTTGGAAGGTGTTGA+AGG + chr2.2:3551307-3551326 None:intergenic 45.0%
!! TGATCAGTCCAGTTCTGAGT+TGG + chr2.2:3551320-3551339 None:intergenic 45.0%
!!! AGGGAGTTTTGAGAAGGAAG+CGG - chr2.2:3548529-3548548 MS.gene051986:intron 45.0%
AAGGCGTGTGACAAGATGGA+AGG + chr2.2:3550617-3550636 None:intergenic 50.0%
AATGGCCCTGGAAGAAGATG+AGG + chr2.2:3549447-3549466 None:intergenic 50.0%
ACTGAAATCTACCAGCCGGA+GGG + chr2.2:3550819-3550838 None:intergenic 50.0%
AGGCGTGTGACAAGATGGAA+GGG + chr2.2:3550616-3550635 None:intergenic 50.0%
AGTTGGGTTCTCTACATGGG+AGG + chr2.2:3547412-3547431 None:intergenic 50.0%
ATCAGTAGTCCTACCACCCA+TGG + chr2.2:3547454-3547473 None:intergenic 50.0%
CAACTGTCTTCTAATCCGCG+AGG - chr2.2:3550424-3550443 MS.gene051986:intron 50.0%
CATCTTCTTCCAGGGCCATT+CGG - chr2.2:3549447-3549466 MS.gene051986:intron 50.0%
CCAGTCCCTGATTCTCCATA+TGG + chr2.2:3550376-3550395 None:intergenic 50.0%
CCATATGGAGAATCAGGGAC+TGG - chr2.2:3550373-3550392 MS.gene051986:intron 50.0%
CCATCTTGTCACACGCCTTT+GGG - chr2.2:3550618-3550637 MS.gene051986:intron 50.0%
CCCTGAACATATCCACTTGC+TGG + chr2.2:3549476-3549495 None:intergenic 50.0%
CTAAAGGGTCGTAGCATTCC+TGG - chr2.2:3547098-3547117 MS.gene051986:intron 50.0%
GACTGATCAGGAACTCGAGA+TGG - chr2.2:3551331-3551350 MS.gene051986:intron 50.0%
GGAAATCTTCCATGGGTGGT+AGG - chr2.2:3547442-3547461 MS.gene051986:intron 50.0%
TACTGAAATCTACCAGCCGG+AGG + chr2.2:3550820-3550839 None:intergenic 50.0%
TCAGATGGGATGGATGCATG+TGG - chr2.2:3550919-3550938 MS.gene051986:intron 50.0%
TCCATCTTGTCACACGCCTT+TGG - chr2.2:3550617-3550636 MS.gene051986:intron 50.0%
TTGTCAATATGTGCCCCCTC+CGG - chr2.2:3550801-3550820 MS.gene051986:CDS 50.0%
! GCAGTTTAGAGCCATGACGT+AGG - chr2.2:3549203-3549222 MS.gene051986:CDS 50.0%
!! CAGTCCAGTTCTGAGTTGGA+AGG + chr2.2:3551316-3551335 None:intergenic 50.0%
!!! GAAGGGAGGGAGTTTTGAGA+AGG - chr2.2:3548523-3548542 MS.gene051986:intron 50.0%
CTGAAATCTACCAGCCGGAG+GGG + chr2.2:3550818-3550837 None:intergenic 55.0%
GTCCGGAAATCTTCCATGGG+TGG - chr2.2:3547438-3547457 MS.gene051986:intron 55.0%
TCGTCTGAGCGTTCCGTATC+AGG + chr2.2:3548594-3548613 None:intergenic 55.0%
TGAAATCTACCAGCCGGAGG+GGG + chr2.2:3550817-3550836 None:intergenic 55.0%
TGAGATCAGCATGCTTCGCC+AGG - chr2.2:3548614-3548633 MS.gene051986:intron 55.0%
! CCCAAAGGCGTGTGACAAGA+TGG + chr2.2:3550621-3550640 None:intergenic 55.0%
! TCCACTTGCTGGATGCCGAA+TGG + chr2.2:3549465-3549484 None:intergenic 55.0%
!! CATGGCTCTAAACTGCCGCT+AGG + chr2.2:3549199-3549218 None:intergenic 55.0%
GCCATTCGGCATCCAGCAAG+TGG - chr2.2:3549461-3549480 MS.gene051986:intron 60.0%
CAATATGTGCCCCCTCCGGC+TGG - chr2.2:3550805-3550824 MS.gene051986:CDS 65.0%
TGCTGGATGCCGAATGGCCC+TGG + chr2.2:3549459-3549478 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 3546542 3551418 3546542 ID=MS.gene051986
chr2.2 mRNA 3546542 3551418 3546542 ID=MS.gene051986.t1;Parent=MS.gene051986
chr2.2 exon 3551405 3551418 3551405 ID=MS.gene051986.t1.exon1;Parent=MS.gene051986.t1
chr2.2 CDS 3551405 3551418 3551405 ID=cds.MS.gene051986.t1;Parent=MS.gene051986.t1
chr2.2 exon 3550716 3550866 3550716 ID=MS.gene051986.t1.exon2;Parent=MS.gene051986.t1
chr2.2 CDS 3550716 3550866 3550716 ID=cds.MS.gene051986.t1;Parent=MS.gene051986.t1
chr2.2 exon 3550432 3550615 3550432 ID=MS.gene051986.t1.exon3;Parent=MS.gene051986.t1
chr2.2 CDS 3550432 3550615 3550432 ID=cds.MS.gene051986.t1;Parent=MS.gene051986.t1
chr2.2 exon 3549782 3549852 3549782 ID=MS.gene051986.t1.exon4;Parent=MS.gene051986.t1
chr2.2 CDS 3549782 3549852 3549782 ID=cds.MS.gene051986.t1;Parent=MS.gene051986.t1
chr2.2 exon 3549325 3549462 3549325 ID=MS.gene051986.t1.exon5;Parent=MS.gene051986.t1
chr2.2 CDS 3549325 3549462 3549325 ID=cds.MS.gene051986.t1;Parent=MS.gene051986.t1
chr2.2 exon 3549154 3549245 3549154 ID=MS.gene051986.t1.exon6;Parent=MS.gene051986.t1
chr2.2 CDS 3549154 3549245 3549154 ID=cds.MS.gene051986.t1;Parent=MS.gene051986.t1
chr2.2 exon 3548229 3548500 3548229 ID=MS.gene051986.t1.exon7;Parent=MS.gene051986.t1
chr2.2 CDS 3548229 3548500 3548229 ID=cds.MS.gene051986.t1;Parent=MS.gene051986.t1
chr2.2 exon 3547515 3547600 3547515 ID=MS.gene051986.t1.exon8;Parent=MS.gene051986.t1
chr2.2 CDS 3547515 3547600 3547515 ID=cds.MS.gene051986.t1;Parent=MS.gene051986.t1
chr2.2 exon 3547249 3547350 3547249 ID=MS.gene051986.t1.exon9;Parent=MS.gene051986.t1
chr2.2 CDS 3547249 3547350 3547249 ID=cds.MS.gene051986.t1;Parent=MS.gene051986.t1
chr2.2 exon 3546542 3546703 3546542 ID=MS.gene051986.t1.exon10;Parent=MS.gene051986.t1
chr2.2 CDS 3546542 3546703 3546542 ID=cds.MS.gene051986.t1;Parent=MS.gene051986.t1
Gene Sequence

>MS.gene051986

ATGTTCAAGGGTATGTTTTTTTTTCTTCTTCTTTAAATTAGTTCCTTGCAAAAATATTATCTTTTCTTAATTTCACCCCTAAAAAAATGGGCATTTCAGGAATCTTCATGATCTCGAGAATTACGCTGCCCGATTTGTTGATTAGTTTATCATCGGATATAGGAAAAACCCATTAAAAAAGTTGATTTTTTTTAACACTAAGATCAATGATTATGAATGATTATAGTGTTGTGTGTTAGATAAATGATAATTAACCCCCAATTTTCATCTGATCTGTGTAATCAAATTGGATGATTTTTTCTTAGTGTTGTGGATATGAAATGAAATGTGGTGATAATTGAAGTTAGAAAAGTATGAATGATTGAGCCCTGTTTCAGCTCTTAACAATTATTAATTTTGCATTTGAAGCATTTTCTGATTGCTGTCAAAATTGGAGATGATATAAAAAAATTATGTTTTTAGCCAATTAGTAATTTGTTTTGTTTATAGATTTATATGTTTCAGAGAGATAGTTTGTACCTTATACAATTGATATGTTGTTTCTTTGTCAAGGTTACTAAAGGGTCGTAGCATTCCTGGTAAAATCTTATTGACCCAGAGGGTAGATCCGATAGATAATTCGGGCTTATACTCACCAACTTACCAAAGGAGTTCCTCATATAGTGATACTGGCACAAGCAATCGTGCAACTGAAACAATAGAGGTGATTTTACTATTCATATTTTGTGGTTATGGCTCATTATATACATTTATGAGACTTATGGATAGCGCTTCATCTAGTGTGACTTCTGCTCTTAATACAGGAAGAAGTTCACAATGGAAGCAAGCCATTTGGAACTACCAACGATAGTAAATTAAAAACATCAACCTCCCATGTAGAGAACCCAACTGAAGAAGTCCGGAAATCTTCCATGGGTGGTAGGACTACTGATTCTGCAAGAGTTATGAAGTTCACAAAGGTTCTCTCTGGAACCATGGTTATATTAGGTATACTTTTATCTTCTGTATTTCTATTTTCTTTTATATCACATATTGACTTATTCTCTATTTGCTCCTAAGTGACCTCTTCCAGTTATGAAAGTATCATATGTAATTCTGAGGTATATGCCATAATAAGTCTAACACGTTGCCATTCTAAATAACTTGATATTTTCTCTCTTCTGATTTTTTAGATGTCGAGTTTTATGTGAACTTAGGTTTGGTTATCAATTATTATATATATAGTTATGTACTTGTCTAACCATTTACTGCTTTATCATAATCAGACATAAACAATTGATATCTGCTTTTTCAGGTTGTTGTTAGTTTATATGCACAAACGATTCATAATAAATATATACGCCCATCACAACAAGAAGCTATATTCCACTACTAAAAAATTAACTACTTGAGTGTCTTTCATTCCCTTGATTTTGGCCCAAAATGTTGTTCATTGTCAAGCATCTATCATTCTTGTTTGCTTATGCTATAAAGCAATTATGCCTGAATAATATTTATTTAGTTTTCCATTTTTCAATGTTAAACTTGTTATGCAAACCATAATTTTCATCCTTAACTATTCTGTAGATAAATTGCGTGAATTAGCTTGGAGTGGTGTTCCAGATTATATGCGTCCTACAGTGTGGAGACTTCTCTTGGTAAGCTCTATGATCTTCAAGAAGTACAATAACTATAATCTTAGAGTTCAGATCAGAATTTTTTAGGATATGTGTATTCTTGTTATACTTTGGTGATATCTAAACAAATTATTGAGGGTGGGTTTCAGAATTATTCTTTCATGGAGATTTAATGCTGCTTATATGAAAAATGCATTGGAAAAATATCATACAAATGATTTTGAAAAAGAATAATTAGGGGTATTTGGCCTATTGATAATCATTTTAAGTCAATAGGTCAACGTCATGATTTTCCATGGTTAATTTTTCTTCTTGAAATTTAAAGATGAACTGACAACAGGGATATGCACCAACTAATTCAGATAGAAGGGAGGGAGTTTTGAGAAGGAAGCGGCTCGAGTATCTTGATTGTGTTTCTCAGTATTATGATATTCCTGATACGGAACGCTCAGACGATGAGATCAGCATGCTTCGCCAGGTATCCTTAATTATGCCACTCTTAATTATTGACTAAAATAAATACTTTTTTTTTAACGTTTACTTTTTATGTTTGTTAGATTGCCGTTGATTGTCCAAGAACTGTACCTGATGTTGCATTCTTCCAGCAACCACAAGTTCAGAAATCACTGGAGCGTATTCTTTACGCATGGTATATTACAGATGACCTGTTTGTCAGGCCTTATATTATTTTCATTCTAGTGTTCTTTGTTGTGGATTTTTTATTGAGGTCAAAAGATGGATTTTAGTTCGAGTAAGATGGTTAGACAGGGTTTATAAGGCGGGATTTGTACTTTCTTTTTGAGATTGTATTCAATCCTGTCTTAAATAGTTAGCGGATGAAGTTATTTCTGTAAGATAGACTGATCCTAGATTTTGTTCCGATTATCTTACTGATTGATAATATTGATGGACACTGTTTGTAGATTCCCTTCTAGAAATGGATTAAGCTTTAGAAGCATGTAAGACAGTGTGGATATTTAATGCACTTTCAGAAGATGCTGAGAATATTTGCTCTAGTTTCACATACTTCTGTTTCTTCCTAGCGGCAGTTTAGAGCCATGACGTAGGAAAAGAAACTAGATAAAAGATGCAAGAACACTGACAGTCTTTTGTGATCTACCTTTTGCATTTGAAGTACATAACACAGTAATAAATTGGATTGGTTGCAATCTATGCTTGAGATGGATACTCTTGAGATCTTTAATTATGGATTAGCCTCCTTGTCGACTATTTTTTGCTTATGAAATGTATGTTTATATATCATGGTTATTTTACTTACATGATAACCTCATCTTCTTCCAGGGCCATTCGGCATCCAGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTCACGCCATTTTTTGTTGTTTTCCTATCAGAATACTTAGAAGGGAGCATAGATAACTGGACAATGTCCGATTTATCTTCAGATAAAATCTCTAATGTAGAGGCTGACTGCTATTGGTGCTTGTCAAAATTGCTTGATGGTATGCAAGATCATTACACATTTGCTCAACCAGGAATTCAAAGGCTTGTCTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGGTAACCTTTTTCTCTGGCCTGTTGTTTTTCTTAAAACATAGTATCTATGATTGTATGAACTTAATACCCCATTTTTGCATTCCCTAATGTTATGTGAACAACCCATTTCAACAACCACACCGTATGTCTATACGGTTTAGTGGGTTTTTTAAATTTTTGTATGCATCTTGGGATGCGTGCCTAGAGAAAATGTGAGTATGACACTATGAAATGATAGGTTGTCGTACAAGGGTGTCTATTTTGGGTTGTACATATAACAGCCCTCTTTTGCATTTGGATTTGGATATGTATTAGTATTACCAAACTAACTTATTTTGTTTGTTATTTACTACCTCTCTTTCAATATATCAGTTTATGTTTTTTGTACAGTGAATGAAAAAACCATTACATGCCCTCAATTTTAGAGAAGTAAAACTACATTTGACTAAATTATCTCCTCAGTCTTCATCAATGCTCTCTCTTTATTCACTTTGTTGAGATACCATTAGATACTGCTTTCATGGTTTTCCATGGTGACATAAAATAAAATGAAATTTATTATCTAAAACAAATATGTTGAAACTTAGGGAGTATATTATTATTTGTATATCCAAATAAAATCTGCTACTGAAACTTTGAGCTGCGCCAGATCCTGTTTCAAGCCATATGGAGAATCAGGGACTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGCGAGGTTTGCACTGATTTTTTTCCTTACAAGTTCAACAAATTTCTACAGAAGAACAACACTATAATTAATAAAGGGACTGCATATTAAATTTCACGAGATAATGGACTGAACAAATTTGACACGGCTTTTATGCCTTTTTAAGTGTGATGTCTGATTTATGTTATCAGATACCCTTCCATCTTGTCACACGCCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCTGACTTCCTTGTGTATATATTTGCCAGTTTTCTTCTTACGGTGAGTCACTATACTTTGTCCCGTTTATATTGTAATTTGTTTGGATTAAATTTTATCTTGTAGTCAAGATGATAAGGAATGGTAATTTTTTGTCAATATGTGCCCCCTCCGGCTGGTAGATTTCAGTAAACGACGGTACAAACGTTTTCTGTGGAATAGATACCATTCTGTAAAATGCTAGTATTATTACATATCAAAGTGTTCAACTCAGATGGGATGGATGCATGTGGATGCATTCTAACAATCATTGCAAAAGACAGTGTTCATTATGTTATCTGAATTTTTATGCTGAACTAGGAACTTATAGCCACAGTCTCACATACCCTTTTTATTGGTCCCGTTTAGCATGTTAGGTTATAGATTCTTCATGTATGTTGCTCTGAAGCTCCTTACCCTTGTTCGTTTTTTGGCATTCTTTATTTTTACTGTCTAGGAGAGGATTTAACTCTTATATTTTCAGTATGGTTGCTTTTGATTATTTTCTTTAGCAATGATTATGCAGTATAAAAGTAAATGTTCTCTAATATCTATCGTCGTTTTTTCAGTGGTCAGACGAAATTCAGAAGCTTGATTTTCAAGAGTTAGTAATGTTCCTTCAACACCTTCCAACTCAGAACTGGACTGATCAGGAACTCGAGATGGTACTCTCTCGTGCATTTATGTGGCACAGCATGTTTAACAACTCTCCTAGCCATTTAGCTGCCTAA
Protein sequence

>MS.gene051986.t1

MFKGMLLKGRSIPGKILLTQRVDPIDNSGLYSPTYQRSSSYSDTGTSNRATETIEEEVHNGSKPFGTTNDSKLKTSTSHVENPTEEVRKSSMGGRTTDSARVMKFTKVLSGTMVILDKLRELAWSGVPDYMRPTVWRLLLGYAPTNSDRREGVLRRKRLEYLDCVSQYYDIPDTERSDDEISMLRQIAVDCPRTVPDVAFFQQPQVQKSLERILYAWAIRHPASGYVQGINDLVTPFFVVFLSEYLEGSIDNWTMSDLSSDKISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSSHMENQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDEIQKLDFQELVMFLQHLPTQNWTDQELEMVLSRAFMWHSMFNNSPSHLAA