Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052170.t1 | XP_003602973.1 | 71.6 | 387 | 108 | 2 | 18 | 404 | 5 | 389 | 1.20E-149 | 539.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052170.t1 | Q9S7T8 | 51.7 | 387 | 184 | 3 | 18 | 402 | 5 | 390 | 1.0e-109 | 398.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052170.t1 | G7J5Q8 | 71.6 | 387 | 108 | 2 | 18 | 404 | 5 | 389 | 8.6e-150 | 539.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052170 | MS.gene48429 | 0.853722 | 1.98E-61 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene006610 | MS.gene052170 | PPI |
MS.gene052170 | MS.gene031697 | PPI |
MS.gene065945 | MS.gene052170 | PPI |
MS.gene052170 | MS.gene045585 | PPI |
MS.gene052170 | MS.gene065944 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052170.t1 | MTR_8g027395 | 69.773 | 397 | 113 | 4 | 9 | 404 | 7 | 397 | 0.0 | 545 |
MS.gene052170.t1 | MTR_3g101010 | 71.576 | 387 | 108 | 2 | 18 | 404 | 5 | 389 | 0.0 | 539 |
MS.gene052170.t1 | MTR_3g018740 | 69.666 | 389 | 112 | 4 | 15 | 402 | 3 | 386 | 0.0 | 531 |
MS.gene052170.t1 | MTR_4g045707 | 66.925 | 387 | 124 | 4 | 18 | 404 | 6 | 388 | 0.0 | 511 |
MS.gene052170.t1 | MTR_8g027420 | 65.206 | 388 | 118 | 4 | 17 | 404 | 5 | 375 | 3.32e-172 | 486 |
MS.gene052170.t1 | MTR_3g101030 | 61.634 | 404 | 133 | 5 | 19 | 404 | 30 | 429 | 1.30e-171 | 486 |
MS.gene052170.t1 | MTR_2g045980 | 64.175 | 388 | 130 | 4 | 18 | 402 | 5 | 386 | 4.58e-171 | 483 |
MS.gene052170.t1 | MTR_2g046030 | 64.175 | 388 | 130 | 4 | 18 | 402 | 5 | 386 | 6.50e-171 | 483 |
MS.gene052170.t1 | MTR_8g461160 | 64.010 | 389 | 134 | 4 | 18 | 402 | 6 | 392 | 3.87e-170 | 481 |
MS.gene052170.t1 | MTR_4g088535 | 63.144 | 388 | 121 | 4 | 16 | 403 | 5 | 370 | 4.69e-169 | 478 |
MS.gene052170.t1 | MTR_3g101180 | 61.905 | 399 | 140 | 6 | 15 | 403 | 3 | 399 | 6.88e-169 | 478 |
MS.gene052170.t1 | MTR_3g048000 | 60.437 | 412 | 133 | 5 | 1 | 403 | 1 | 391 | 1.05e-167 | 475 |
MS.gene052170.t1 | MTR_7g451890 | 60.448 | 402 | 150 | 5 | 10 | 404 | 3 | 402 | 4.59e-167 | 474 |
MS.gene052170.t1 | MTR_4g088525 | 65.312 | 369 | 118 | 4 | 37 | 403 | 8 | 368 | 2.37e-166 | 471 |
MS.gene052170.t1 | MTR_7g050750 | 61.381 | 391 | 145 | 4 | 18 | 404 | 8 | 396 | 2.24e-164 | 467 |
MS.gene052170.t1 | MTR_3g101130 | 60.459 | 392 | 146 | 4 | 16 | 404 | 4 | 389 | 1.00e-163 | 465 |
MS.gene052170.t1 | MTR_7g047780 | 60.199 | 402 | 151 | 5 | 10 | 404 | 3 | 402 | 2.18e-163 | 464 |
MS.gene052170.t1 | MTR_7g050810 | 59.214 | 407 | 149 | 6 | 9 | 404 | 4 | 404 | 5.62e-160 | 456 |
MS.gene052170.t1 | MTR_3g015620 | 61.084 | 406 | 126 | 6 | 1 | 402 | 1 | 378 | 4.71e-158 | 450 |
MS.gene052170.t1 | MTR_3g101050 | 62.183 | 394 | 124 | 9 | 14 | 402 | 23 | 396 | 2.75e-149 | 429 |
MS.gene052170.t1 | MTR_3g102920 | 56.188 | 404 | 130 | 7 | 10 | 403 | 43 | 409 | 3.97e-140 | 406 |
MS.gene052170.t1 | MTR_3g100520 | 84.685 | 222 | 21 | 1 | 183 | 404 | 1 | 209 | 3.94e-133 | 380 |
MS.gene052170.t1 | MTR_3g101200 | 52.525 | 396 | 159 | 5 | 10 | 403 | 23 | 391 | 4.45e-125 | 367 |
MS.gene052170.t1 | MTR_3g101190 | 54.521 | 365 | 101 | 5 | 40 | 404 | 13 | 312 | 1.16e-124 | 363 |
MS.gene052170.t1 | MTR_3g100995 | 66.148 | 257 | 80 | 4 | 149 | 404 | 14 | 264 | 4.47e-119 | 347 |
MS.gene052170.t1 | MTR_3g100010 | 52.260 | 354 | 111 | 6 | 7 | 320 | 1 | 336 | 5.44e-110 | 327 |
MS.gene052170.t1 | MTR_7g050830 | 51.840 | 326 | 121 | 5 | 9 | 310 | 5 | 318 | 6.18e-106 | 316 |
MS.gene052170.t1 | MTR_3g018747 | 63.359 | 262 | 78 | 4 | 142 | 402 | 9 | 253 | 1.60e-105 | 312 |
MS.gene052170.t1 | MTR_3g015760 | 56.250 | 288 | 106 | 5 | 123 | 402 | 4 | 279 | 5.85e-101 | 301 |
MS.gene052170.t1 | MTR_3g111160 | 65.919 | 223 | 72 | 3 | 183 | 404 | 1 | 220 | 1.57e-88 | 267 |
MS.gene052170.t1 | MTR_3g101110 | 57.741 | 239 | 67 | 4 | 145 | 378 | 71 | 280 | 1.53e-85 | 262 |
MS.gene052170.t1 | MTR_3g114310 | 41.266 | 395 | 211 | 11 | 23 | 404 | 24 | 410 | 2.26e-84 | 263 |
MS.gene052170.t1 | MTR_2g046410 | 63.768 | 207 | 69 | 3 | 199 | 402 | 144 | 347 | 1.27e-80 | 251 |
MS.gene052170.t1 | MTR_3g099970 | 60.606 | 198 | 59 | 3 | 142 | 339 | 20 | 198 | 2.86e-79 | 243 |
MS.gene052170.t1 | MTR_3g111150 | 57.222 | 180 | 49 | 2 | 21 | 198 | 2 | 155 | 7.45e-65 | 205 |
MS.gene052170.t1 | MTR_3g101020 | 56.842 | 190 | 51 | 4 | 216 | 404 | 1 | 160 | 1.71e-63 | 201 |
MS.gene052170.t1 | MTR_3g100990 | 82.677 | 127 | 22 | 0 | 16 | 142 | 3 | 129 | 4.95e-62 | 208 |
MS.gene052170.t1 | MTR_3g102870 | 66.000 | 150 | 49 | 2 | 205 | 354 | 1 | 148 | 7.93e-62 | 197 |
MS.gene052170.t1 | MTR_3g101150 | 61.250 | 160 | 56 | 3 | 248 | 403 | 1 | 158 | 6.03e-58 | 187 |
MS.gene052170.t1 | MTR_4g093550 | 63.095 | 84 | 31 | 0 | 18 | 101 | 6 | 89 | 2.45e-27 | 104 |
MS.gene052170.t1 | MTR_6g046890 | 57.500 | 80 | 24 | 2 | 35 | 104 | 16 | 95 | 8.38e-20 | 85.5 |
MS.gene052170.t1 | MTR_3g101140 | 63.768 | 69 | 24 | 1 | 337 | 404 | 48 | 116 | 4.72e-17 | 77.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052170.t1 | AT1G47710 | 51.680 | 387 | 184 | 3 | 18 | 402 | 5 | 390 | 1.19e-141 | 409 |
MS.gene052170.t1 | AT1G47710 | 51.680 | 387 | 184 | 3 | 18 | 402 | 32 | 417 | 4.45e-141 | 409 |
MS.gene052170.t1 | AT3G45220 | 47.328 | 393 | 191 | 6 | 18 | 401 | 5 | 390 | 7.44e-125 | 366 |
MS.gene052170.t1 | AT2G25240 | 47.423 | 388 | 190 | 7 | 18 | 401 | 5 | 382 | 5.22e-120 | 353 |
MS.gene052170.t1 | AT2G26390 | 46.096 | 397 | 186 | 9 | 18 | 401 | 5 | 386 | 4.19e-116 | 344 |
MS.gene052170.t1 | AT1G62170 | 41.730 | 393 | 193 | 8 | 18 | 401 | 66 | 431 | 1.58e-102 | 311 |
MS.gene052170.t1 | AT1G64030 | 41.795 | 390 | 198 | 6 | 18 | 401 | 5 | 371 | 4.08e-99 | 300 |
MS.gene052170.t1 | AT2G14540 | 42.821 | 397 | 198 | 7 | 10 | 401 | 25 | 397 | 2.36e-97 | 296 |
MS.gene052170.t1 | AT2G35580 | 40.196 | 408 | 200 | 10 | 1 | 401 | 1 | 371 | 7.72e-97 | 294 |
MS.gene052170.t1 | AT1G62170 | 38.498 | 426 | 193 | 9 | 18 | 401 | 66 | 464 | 2.19e-95 | 293 |
MS.gene052170.t1 | AT1G64010 | 46.364 | 220 | 92 | 5 | 183 | 401 | 1 | 195 | 1.40e-58 | 190 |
MS.gene052170.t1 | AT1G64010 | 44.660 | 206 | 88 | 5 | 197 | 401 | 1 | 181 | 2.55e-50 | 168 |
MS.gene052170.t1 | AT1G62160 | 38.222 | 225 | 105 | 7 | 184 | 401 | 21 | 218 | 3.23e-32 | 121 |
MS.gene052170.t1 | AT1G63280 | 48.696 | 115 | 55 | 2 | 142 | 254 | 8 | 120 | 8.87e-31 | 114 |
MS.gene052170.t1 | AT1G51330 | 47.748 | 111 | 55 | 2 | 141 | 248 | 30 | 140 | 1.41e-25 | 103 |
MS.gene052170.t1 | AT1G64020 | 34.783 | 115 | 66 | 4 | 23 | 132 | 10 | 120 | 6.57e-14 | 68.6 |
Find 97 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAAATGCAATGTACTTTAA+AGG | 0.146186 | 3.2:-83783332 | MS.gene052170:CDS |
TGATTAAAGAAGTGAATTTA+TGG | 0.223064 | 3.2:-83783433 | MS.gene052170:CDS |
TCATCTTCGCCTTGATTATA+AGG | 0.237108 | 3.2:+83783164 | None:intergenic |
TCCAATAAACCGTTTCTTAT+AGG | 0.238320 | 3.2:+83783217 | None:intergenic |
GAGTAATAATTTCTTTAATA+AGG | 0.258043 | 3.2:+83783390 | None:intergenic |
GTTAGGTTGTTGACTGAATT+TGG | 0.264199 | 3.2:+83783368 | None:intergenic |
TCCTATAAGAAACGGTTTAT+TGG | 0.267830 | 3.2:-83783218 | MS.gene052170:CDS |
TGACGGAGCTACCATTTAAA+AGG | 0.273055 | 3.2:+83783258 | None:intergenic |
CCAAGATTCAATATTTCGTT+TGG | 0.303904 | 3.2:-83782999 | MS.gene052170:CDS |
TGCATTTGCAAATATGAGTT+TGG | 0.309749 | 3.2:+83783346 | None:intergenic |
GTTGAGATGGTCAGTGGATT+TGG | 0.313863 | 3.2:+83784793 | None:intergenic |
CTATCTGATGCTGCTTCTTC+CGG | 0.324419 | 3.2:-83784740 | MS.gene052170:CDS |
AAACTTCTCTAATTAGAAAT+AGG | 0.325707 | 3.2:+83782730 | None:intergenic |
GAAATATGTTGGAAACATAT+AGG | 0.352361 | 3.2:+83782877 | None:intergenic |
TATGAAAACATACCTTGTTC+TGG | 0.356984 | 3.2:+83784600 | None:intergenic |
TCCCACGCAACAACAGCTTC+TGG | 0.368338 | 3.2:-83784828 | MS.gene052170:CDS |
GTCAACTTTGGTTGAGAAGC+TGG | 0.373900 | 3.2:-83783093 | MS.gene052170:CDS |
GAAGGAAGGTTGAAGAGAAA+TGG | 0.376988 | 3.2:+83784673 | None:intergenic |
CTCTTTCATCCAAGGTGTGT+GGG | 0.385352 | 3.2:-83784705 | MS.gene052170:CDS |
GATTAAAGAAGTGAATTTAT+GGG | 0.386003 | 3.2:-83783432 | MS.gene052170:CDS |
ATTAGCCACAATTTCTTTGA+AGG | 0.395580 | 3.2:+83784655 | None:intergenic |
CAAGATTCAATATTTCGTTT+GGG | 0.400361 | 3.2:-83782998 | MS.gene052170:CDS |
GGAAACTTTGGTTTGGTTGG+TGG | 0.403182 | 3.2:+83784958 | None:intergenic |
GACAGTCCATCCTTTGCATC+TGG | 0.405033 | 3.2:+83783113 | None:intergenic |
CAGGTGCTCAATCCTCTTGT+TGG | 0.408553 | 3.2:-83782681 | MS.gene052170:CDS |
CTTTGTCTTCCTTATAATCA+AGG | 0.415705 | 3.2:-83783173 | MS.gene052170:CDS |
CCTCATGGCTGCTGCCTCTG+AGG | 0.417264 | 3.2:-83784852 | MS.gene052170:CDS |
CCATGAGGCTGAGCGTAACT+TGG | 0.418916 | 3.2:+83784867 | None:intergenic |
TCCGTTTGTTGATTGATTCA+CGG | 0.423037 | 3.2:+83785008 | None:intergenic |
ACCGGAACAATCCTCTTTGT+TGG | 0.428785 | 3.2:-83782705 | MS.gene052170:CDS |
GAAAGAGAGGCGAGGCCCGC+CGG | 0.429775 | 3.2:+83784721 | None:intergenic |
GACCATGGTAAGGGAAACTT+TGG | 0.431672 | 3.2:+83784946 | None:intergenic |
GAAAGATTTGTGAAATATGT+TGG | 0.433321 | 3.2:+83782866 | None:intergenic |
AACAATCCTCTTTGTTGGGC+AGG | 0.435386 | 3.2:-83782700 | MS.gene052170:CDS |
CTCATGGCTGCTGCCTCTGA+GGG | 0.435904 | 3.2:-83784851 | MS.gene052170:CDS |
TTGCAAATATGAGTTTGGTT+AGG | 0.436046 | 3.2:+83783351 | None:intergenic |
AAGGGAAACTTTGGTTTGGT+TGG | 0.440125 | 3.2:+83784955 | None:intergenic |
CCGGAACAATCCTCTTTGTT+GGG | 0.441601 | 3.2:-83782704 | MS.gene052170:CDS |
CCAAACGAAATATTGAATCT+TGG | 0.448102 | 3.2:+83782999 | None:intergenic |
TAATGATTATAAAGCCACTT+TGG | 0.450703 | 3.2:-83784636 | MS.gene052170:CDS |
CACTTCTTTAATCACTTCAC+TGG | 0.457017 | 3.2:+83783442 | None:intergenic |
TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.2:-83782846 | MS.gene052170:CDS |
CCGTTTGTTGATTGATTCAC+GGG | 0.460807 | 3.2:+83785009 | None:intergenic |
ACTGATACGATGAAGGAGTT+AGG | 0.462036 | 3.2:-83782966 | MS.gene052170:CDS |
CCCAACAAAGAGGATTGTTC+CGG | 0.470616 | 3.2:+83782704 | None:intergenic |
CGGAAGAAGCAGCATCAGAT+AGG | 0.486728 | 3.2:+83784741 | None:intergenic |
AGAGATGTTTGACCATGGTA+AGG | 0.494445 | 3.2:+83784936 | None:intergenic |
TTTCTTATAGGAGGTCATGA+AGG | 0.498012 | 3.2:+83783229 | None:intergenic |
TGGTAAGGGAAACTTTGGTT+TGG | 0.501909 | 3.2:+83784951 | None:intergenic |
ACCTTCCTTCAAAGAAATTG+TGG | 0.502391 | 3.2:-83784660 | MS.gene052170:CDS |
CCTCGCCTCTCTTTCATCCA+AGG | 0.508325 | 3.2:-83784713 | MS.gene052170:CDS |
GTAAAACCTCCAGAAGAGAA+AGG | 0.510977 | 3.2:+83782933 | None:intergenic |
GCCACAATTTCTTTGAAGGA+AGG | 0.512461 | 3.2:+83784659 | None:intergenic |
AATAAACCGTTTCTTATAGG+AGG | 0.518982 | 3.2:+83783220 | None:intergenic |
CCCGTGAATCAATCAACAAA+CGG | 0.520413 | 3.2:-83785009 | MS.gene052170:CDS |
CAATGTACTTTAAAGGAACA+TGG | 0.522199 | 3.2:-83783325 | MS.gene052170:CDS |
TCATGACCTCCTATAAGAAA+CGG | 0.525564 | 3.2:-83783226 | MS.gene052170:CDS |
TCTCTTTCATCCAAGGTGTG+TGG | 0.526400 | 3.2:-83784706 | MS.gene052170:CDS |
TTTCTTCCAGATGCAAAGGA+TGG | 0.531417 | 3.2:-83783119 | MS.gene052170:CDS |
GACTGAGAAGTTTGATACTT+CGG | 0.537810 | 3.2:-83783303 | MS.gene052170:CDS |
TCTGATGCTGCTTCTTCCGG+CGG | 0.542664 | 3.2:-83784737 | MS.gene052170:CDS |
TTCAGTTGATTTCCAGAACA+AGG | 0.543538 | 3.2:-83784612 | MS.gene052170:intron |
TTTGATCAACCCACACACCT+TGG | 0.549446 | 3.2:+83784696 | None:intergenic |
GAATTTATGGGCTGAAGAAG+AGG | 0.549526 | 3.2:-83783420 | MS.gene052170:CDS |
TTCTTATAGGAGGTCATGAA+GGG | 0.550790 | 3.2:+83783230 | None:intergenic |
CTGATGCTGCTTCTTCCGGC+GGG | 0.551412 | 3.2:-83784736 | MS.gene052170:CDS |
TCCAGAAGCTGTTGTTGCGT+GGG | 0.552353 | 3.2:+83784827 | None:intergenic |
GTCCAGAAGCTGTTGTTGCG+TGG | 0.552957 | 3.2:+83784826 | None:intergenic |
AAAGGATGGACTGTCAACTT+TGG | 0.555822 | 3.2:-83783105 | MS.gene052170:CDS |
CCAAGTTACGCTCAGCCTCA+TGG | 0.556554 | 3.2:-83784867 | MS.gene052170:CDS |
GGAAACAAGATGAGAGGCGA+TGG | 0.556903 | 3.2:+83784769 | None:intergenic |
GGTCATGAAGGGAACTTTGA+CGG | 0.559017 | 3.2:+83783241 | None:intergenic |
TGGGCTGAAGAAGAGGCAAA+TGG | 0.561310 | 3.2:-83783413 | MS.gene052170:CDS |
AGCAGCATCAGATAGGATGA+TGG | 0.563820 | 3.2:+83784748 | None:intergenic |
CTAATTAGAGAAGTTTCGAC+CGG | 0.568701 | 3.2:-83782723 | MS.gene052170:CDS |
GAAGTTTGATACTTCGGTAA+CGG | 0.571905 | 3.2:-83783297 | MS.gene052170:CDS |
GAGAGGCGATGGAGTTGAGA+TGG | 0.573677 | 3.2:+83784780 | None:intergenic |
GAAATCAACTGAAGCCAAAG+TGG | 0.575945 | 3.2:+83784622 | None:intergenic |
GGTTGATTCATCGTGAAGGA+CGG | 0.577040 | 3.2:+83784979 | None:intergenic |
AGTTAAGATCATCCAACAAG+AGG | 0.577438 | 3.2:+83782669 | None:intergenic |
TGAAACTACTGATACGATGA+AGG | 0.578251 | 3.2:-83782973 | MS.gene052170:CDS |
GAGATGTTTGACCATGGTAA+GGG | 0.580757 | 3.2:+83784937 | None:intergenic |
TCTCTAATTAGAAATAGGAA+AGG | 0.584531 | 3.2:+83782735 | None:intergenic |
GATGGTCAGTGGATTTGGAT+CGG | 0.592329 | 3.2:+83784798 | None:intergenic |
TTGTTGCGTGGGACCCTCAG+AGG | 0.607840 | 3.2:+83784838 | None:intergenic |
TGAGCACCTGCCCAACAAAG+AGG | 0.624187 | 3.2:+83782694 | None:intergenic |
AACCAAAGTTTCCCTTACCA+TGG | 0.630609 | 3.2:-83784948 | MS.gene052170:CDS |
CCTCAGAGGCAGCAGCCATG+AGG | 0.640062 | 3.2:+83784852 | None:intergenic |
TGGTGGTTGATTCATCGTGA+AGG | 0.640526 | 3.2:+83784975 | None:intergenic |
GATGATGGAAACAAGATGAG+AGG | 0.645061 | 3.2:+83784763 | None:intergenic |
TGAGAAGAGATGTTTGACCA+TGG | 0.646563 | 3.2:+83784931 | None:intergenic |
ACACACCTTGGATGAAAGAG+AGG | 0.656878 | 3.2:+83784708 | None:intergenic |
AGCGTAACTTGGAGTGACAG+CGG | 0.664638 | 3.2:+83784878 | None:intergenic |
GCTACAAAGTCTTCTCGATG+TGG | 0.664760 | 3.2:+83782765 | None:intergenic |
GGTCAGTGGATTTGGATCGG+AGG | 0.671238 | 3.2:+83784801 | None:intergenic |
GATGGAGTTGAGATGGTCAG+TGG | 0.682782 | 3.2:+83784787 | None:intergenic |
CCTTGGATGAAAGAGAGGCG+AGG | 0.711185 | 3.2:+83784713 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAATCAAAATAAAGAAAT+TGG | - | chr3.2:83783569-83783588 | MS.gene052170:intron | 10.0% |
!!! | TTAATTTGATATGATTTTAA+AGG | - | chr3.2:83784228-83784247 | MS.gene052170:intron | 10.0% |
!! | AAAAAACTAATTATTTGTGA+AGG | + | chr3.2:83783261-83783280 | None:intergenic | 15.0% |
!! | GAGTAATAATTTCTTTAATA+AGG | + | chr3.2:83784306-83784325 | None:intergenic | 15.0% |
!!! | AAAAAACTAATAGTTTGTTA+AGG | + | chr3.2:83783190-83783209 | None:intergenic | 15.0% |
!!! | TTCAAATTTTATAGTACAAA+AGG | - | chr3.2:83783975-83783994 | MS.gene052170:intron | 15.0% |
!!! | TTTTATTTCATAACCTAATT+TGG | - | chr3.2:83783293-83783312 | MS.gene052170:CDS | 15.0% |
!! | AAACTTCTCTAATTAGAAAT+AGG | + | chr3.2:83784966-83784985 | None:intergenic | 20.0% |
!! | AATTAACATGAAATAACATG+AGG | + | chr3.2:83783149-83783168 | None:intergenic | 20.0% |
!! | ATCAGAATATAAAACAATCA+AGG | + | chr3.2:83783865-83783884 | None:intergenic | 20.0% |
!! | ATTAACATGAAATAACATGA+GGG | + | chr3.2:83783148-83783167 | None:intergenic | 20.0% |
!! | GATTAAAGAAGTGAATTTAT+GGG | - | chr3.2:83784261-83784280 | MS.gene052170:intron | 20.0% |
!! | GTGAAAATTATGTTAACAAA+AGG | - | chr3.2:83784142-83784161 | MS.gene052170:intron | 20.0% |
!! | TAATACAATGCTAAATTAGT+TGG | + | chr3.2:83784121-83784140 | None:intergenic | 20.0% |
!! | TCAGAATATAAAACAATCAA+GGG | + | chr3.2:83783864-83783883 | None:intergenic | 20.0% |
!! | TGATTAAAGAAGTGAATTTA+TGG | - | chr3.2:83784260-83784279 | MS.gene052170:intron | 20.0% |
!! | TTGTACTATAAAATTTGAAG+AGG | + | chr3.2:83783974-83783993 | None:intergenic | 20.0% |
!!! | AGTGATTTTTACCTTTTAAA+TGG | - | chr3.2:83784424-83784443 | MS.gene052170:intron | 20.0% |
!!! | CTCTAAAATTATTTTAGATG+AGG | + | chr3.2:83784030-83784049 | None:intergenic | 20.0% |
! | AAATAAAGAAATTGGACAGA+TGG | - | chr3.2:83783577-83783596 | MS.gene052170:intron | 25.0% |
! | AATAAAGAAATTGGACAGAT+GGG | - | chr3.2:83783578-83783597 | MS.gene052170:intron | 25.0% |
! | AATAACGTTAGATCCAAATT+AGG | + | chr3.2:83783309-83783328 | None:intergenic | 25.0% |
! | AGCACAAATAATATTTGTGT+TGG | - | chr3.2:83783339-83783358 | MS.gene052170:CDS | 25.0% |
! | ATACACACTATTCAAAATGA+TGG | + | chr3.2:83783630-83783649 | None:intergenic | 25.0% |
! | CAAGATTCAATATTTCGTTT+GGG | - | chr3.2:83784695-83784714 | MS.gene052170:CDS | 25.0% |
! | CTTATTAAAAAAGTGGAAGT+AGG | - | chr3.2:83784658-83784677 | MS.gene052170:CDS | 25.0% |
! | GAAAGATTTGTGAAATATGT+TGG | + | chr3.2:83784830-83784849 | None:intergenic | 25.0% |
! | GAAATATGTTGGAAACATAT+AGG | + | chr3.2:83784819-83784838 | None:intergenic | 25.0% |
! | GCTTAAACATATTTGCATAT+TGG | - | chr3.2:83783482-83783501 | MS.gene052170:intron | 25.0% |
! | TAATGATTATAAAGCCACTT+TGG | - | chr3.2:83783057-83783076 | MS.gene052170:CDS | 25.0% |
! | TACACACTATTCAAAATGAT+GGG | + | chr3.2:83783629-83783648 | None:intergenic | 25.0% |
! | TCTCTAATTAGAAATAGGAA+AGG | + | chr3.2:83784961-83784980 | None:intergenic | 25.0% |
! | TCTTCCTCTTATTAAAAAAG+TGG | - | chr3.2:83784651-83784670 | MS.gene052170:CDS | 25.0% |
! | TTAATATATGGAGTGGAAAT+AGG | + | chr3.2:83783123-83783142 | None:intergenic | 25.0% |
! | TTCATTGAAGTAAATGAAGA+AGG | - | chr3.2:83784847-83784866 | MS.gene052170:CDS | 25.0% |
!! | CATTTTGAATAGTGTGTATT+TGG | - | chr3.2:83783631-83783650 | MS.gene052170:intron | 25.0% |
!! | GTATGAATTTGCTTTATATG+CGG | - | chr3.2:83783656-83783675 | MS.gene052170:intron | 25.0% |
!! | TGCTTTGATCAATTTAGAAT+TGG | + | chr3.2:83783915-83783934 | None:intergenic | 25.0% |
!!! | ACTTCCACTTTTTTAATAAG+AGG | + | chr3.2:83784658-83784677 | None:intergenic | 25.0% |
!!! | GGGATGATATTTATTTTGAT+GGG | + | chr3.2:83783755-83783774 | None:intergenic | 25.0% |
!!! | TATAGATGTCATTTTTTCAG+TGG | + | chr3.2:83783808-83783827 | None:intergenic | 25.0% |
AATAAACCGTTTCTTATAGG+AGG | + | chr3.2:83784476-83784495 | None:intergenic | 30.0% | |
ACAAAGGTTTGTCACATATA+TGG | + | chr3.2:83783941-83783960 | None:intergenic | 30.0% | |
ATCTAGAAAACAGAAAGGAT+AGG | + | chr3.2:83784098-83784117 | None:intergenic | 30.0% | |
ATTAGCCACAATTTCTTTGA+AGG | + | chr3.2:83783041-83783060 | None:intergenic | 30.0% | |
CCAAACGAAATATTGAATCT+TGG | + | chr3.2:83784697-83784716 | None:intergenic | 30.0% | |
CCAAGATTCAATATTTCGTT+TGG | - | chr3.2:83784694-83784713 | MS.gene052170:CDS | 30.0% | |
CTTTGTCTTCCTTATAATCA+AGG | - | chr3.2:83784520-83784539 | MS.gene052170:intron | 30.0% | |
GCAAATGCAATGTACTTTAA+AGG | - | chr3.2:83784361-83784380 | MS.gene052170:intron | 30.0% | |
TATGAAAACATACCTTGTTC+TGG | + | chr3.2:83783096-83783115 | None:intergenic | 30.0% | |
TCCAATAAACCGTTTCTTAT+AGG | + | chr3.2:83784479-83784498 | None:intergenic | 30.0% | |
TCCTATAAGAAACGGTTTAT+TGG | - | chr3.2:83784475-83784494 | MS.gene052170:intron | 30.0% | |
TGCATTTGCAAATATGAGTT+TGG | + | chr3.2:83784350-83784369 | None:intergenic | 30.0% | |
TGGGAAAACATTATACATAC+AGG | + | chr3.2:83783610-83783629 | None:intergenic | 30.0% | |
TTGCAAATATGAGTTTGGTT+AGG | + | chr3.2:83784345-83784364 | None:intergenic | 30.0% | |
TTTGAATAGTGTGTATTTGG+AGG | - | chr3.2:83783634-83783653 | MS.gene052170:intron | 30.0% | |
! | ACATGAGACCTTAATGTTTT+AGG | - | chr3.2:83783392-83783411 | MS.gene052170:CDS | 30.0% |
! | CAATGTACTTTAAAGGAACA+TGG | - | chr3.2:83784368-83784387 | MS.gene052170:intron | 30.0% |
! | TATTTTTCTTCCAGATGCAA+AGG | - | chr3.2:83784570-83784589 | MS.gene052170:intron | 30.0% |
!! | AACATGAGGGCATTAATATA+TGG | + | chr3.2:83783135-83783154 | None:intergenic | 30.0% |
!! | TCTTTGTTGGAGTTTGTTTT+CGG | + | chr3.2:83783687-83783706 | None:intergenic | 30.0% |
!! | TTCTGGAGGTTTTACAAAAA+TGG | - | chr3.2:83784768-83784787 | MS.gene052170:CDS | 30.0% |
!!! | GGGGATGATATTTATTTTGA+TGG | + | chr3.2:83783756-83783775 | None:intergenic | 30.0% |
ACCTTCCTTCAAAGAAATTG+TGG | - | chr3.2:83783033-83783052 | MS.gene052170:CDS | 35.0% | |
ATGCAAATATGTTTAAGCGC+TGG | + | chr3.2:83783480-83783499 | None:intergenic | 35.0% | |
CACTTCTTTAATCACTTCAC+TGG | + | chr3.2:83784254-83784273 | None:intergenic | 35.0% | |
CCAACCAACCTAAAACATTA+AGG | + | chr3.2:83783403-83783422 | None:intergenic | 35.0% | |
CTAATTAGAGAAGTTTCGAC+CGG | - | chr3.2:83784970-83784989 | MS.gene052170:CDS | 35.0% | |
GAAGTTTGATACTTCGGTAA+CGG | - | chr3.2:83784396-83784415 | MS.gene052170:intron | 35.0% | |
GACTGAGAAGTTTGATACTT+CGG | - | chr3.2:83784390-83784409 | MS.gene052170:intron | 35.0% | |
GTTGGATCTAGAAAACAGAA+AGG | + | chr3.2:83784103-83784122 | None:intergenic | 35.0% | |
TCATCTTCGCCTTGATTATA+AGG | + | chr3.2:83784532-83784551 | None:intergenic | 35.0% | |
TCATGACCTCCTATAAGAAA+CGG | - | chr3.2:83784467-83784486 | MS.gene052170:intron | 35.0% | |
TGAAACTACTGATACGATGA+AGG | - | chr3.2:83784720-83784739 | MS.gene052170:CDS | 35.0% | |
TTCTTATAGGAGGTCATGAA+GGG | + | chr3.2:83784466-83784485 | None:intergenic | 35.0% | |
TTTCTTATAGGAGGTCATGA+AGG | + | chr3.2:83784467-83784486 | None:intergenic | 35.0% | |
! | ATTTTACCTTTCTCTTCTGG+AGG | - | chr3.2:83784754-83784773 | MS.gene052170:CDS | 35.0% |
! | CGGTTTATTGGAGATTTTGA+TGG | - | chr3.2:83784487-83784506 | MS.gene052170:intron | 35.0% |
! | GTGATTTTACCTTTCTCTTC+TGG | - | chr3.2:83784751-83784770 | MS.gene052170:CDS | 35.0% |
! | GTTAGGTTGTTGACTGAATT+TGG | + | chr3.2:83784328-83784347 | None:intergenic | 35.0% |
! | TCCGTTTGTTGATTGATTCA+CGG | + | chr3.2:83782688-83782707 | None:intergenic | 35.0% |
! | TGGAGGTTTTACAAAAATGG+TGG | - | chr3.2:83784771-83784790 | MS.gene052170:CDS | 35.0% |
! | TTCAGTTGATTTCCAGAACA+AGG | - | chr3.2:83783081-83783100 | MS.gene052170:CDS | 35.0% |
!! | AAGAGGCGTTTCAATAACAA+AGG | + | chr3.2:83783957-83783976 | None:intergenic | 35.0% |
!! | CTTTGTTGGAGTTTGTTTTC+GGG | + | chr3.2:83783686-83783705 | None:intergenic | 35.0% |
!! | GAGACCTTAATGTTTTAGGT+TGG | - | chr3.2:83783396-83783415 | MS.gene052170:CDS | 35.0% |
!!! | AACAATCAAGGGTGTTCTTT+TGG | + | chr3.2:83783853-83783872 | None:intergenic | 35.0% |
!!! | AATGGTGGATTCTTCTTTTG+TGG | - | chr3.2:83784786-83784805 | MS.gene052170:CDS | 35.0% |
!!! | ACAATCAAGGGTGTTCTTTT+GGG | + | chr3.2:83783852-83783871 | None:intergenic | 35.0% |
!!! | ATGGTGGATTCTTCTTTTGT+GGG | - | chr3.2:83784787-83784806 | MS.gene052170:CDS | 35.0% |
!!! | ATGTCATTTTTTCAGTGGTC+AGG | + | chr3.2:83783803-83783822 | None:intergenic | 35.0% |
!!! | CCTTAATGTTTTAGGTTGGT+TGG | - | chr3.2:83783400-83783419 | MS.gene052170:CDS | 35.0% |
!!! | TATAGGAGTTGGTGGTTTTA+GGG | + | chr3.2:83783776-83783795 | None:intergenic | 35.0% |
AAAGAAATTGGACAGATGGG+TGG | - | chr3.2:83783581-83783600 | MS.gene052170:intron | 40.0% | |
AACCAAAGTTTCCCTTACCA+TGG | - | chr3.2:83782745-83782764 | MS.gene052170:CDS | 40.0% | |
ACTGATACGATGAAGGAGTT+AGG | - | chr3.2:83784727-83784746 | MS.gene052170:CDS | 40.0% | |
AGAGATGTTTGACCATGGTA+AGG | + | chr3.2:83782760-83782779 | None:intergenic | 40.0% | |
ATAGCACACGTTCATGACTT+TGG | - | chr3.2:83783883-83783902 | MS.gene052170:intron | 40.0% | |
CCCGTGAATCAATCAACAAA+CGG | - | chr3.2:83782684-83782703 | MS.gene052170:CDS | 40.0% | |
GAAATCAACTGAAGCCAAAG+TGG | + | chr3.2:83783074-83783093 | None:intergenic | 40.0% | |
GAAGGAAGGTTGAAGAGAAA+TGG | + | chr3.2:83783023-83783042 | None:intergenic | 40.0% | |
GAGATGTTTGACCATGGTAA+GGG | + | chr3.2:83782759-83782778 | None:intergenic | 40.0% | |
GTAAAACCTCCAGAAGAGAA+AGG | + | chr3.2:83784763-83784782 | None:intergenic | 40.0% | |
TGACGGAGCTACCATTTAAA+AGG | + | chr3.2:83784438-83784457 | None:intergenic | 40.0% | |
TGAGAAGAGATGTTTGACCA+TGG | + | chr3.2:83782765-83782784 | None:intergenic | 40.0% | |
TGGTAAGGGAAACTTTGGTT+TGG | + | chr3.2:83782745-83782764 | None:intergenic | 40.0% | |
TTCAGTGGTCAGGTAAGTAT+AGG | + | chr3.2:83783793-83783812 | None:intergenic | 40.0% | |
TTTCTTCCAGATGCAAAGGA+TGG | - | chr3.2:83784574-83784593 | MS.gene052170:intron | 40.0% | |
! | CCGTTTGTTGATTGATTCAC+GGG | + | chr3.2:83782687-83782706 | None:intergenic | 40.0% |
! | GAATTTATGGGCTGAAGAAG+AGG | - | chr3.2:83784273-83784292 | MS.gene052170:intron | 40.0% |
! | GCCACAATTTCTTTGAAGGA+AGG | + | chr3.2:83783037-83783056 | None:intergenic | 40.0% |
! | GGTAGAACTTGCTCTAAATC+AGG | + | chr3.2:83783240-83783259 | None:intergenic | 40.0% |
! | TGATGGGTGTTGTCCTTTAT+GGG | + | chr3.2:83783739-83783758 | None:intergenic | 40.0% |
! | TTGATGGGTGTTGTCCTTTA+TGG | + | chr3.2:83783740-83783759 | None:intergenic | 40.0% |
!! | AAAGGATGGACTGTCAACTT+TGG | - | chr3.2:83784588-83784607 | MS.gene052170:intron | 40.0% |
!! | AAGGGAAACTTTGGTTTGGT+TGG | + | chr3.2:83782741-83782760 | None:intergenic | 40.0% |
!! | GAGGGCATTAATATATGGAG+TGG | + | chr3.2:83783130-83783149 | None:intergenic | 40.0% |
!! | GATGATGGAAACAAGATGAG+AGG | + | chr3.2:83782933-83782952 | None:intergenic | 40.0% |
!!! | ATAGGAGTTGGTGGTTTTAG+GGG | + | chr3.2:83783775-83783794 | None:intergenic | 40.0% |
!!! | CAATCAAGGGTGTTCTTTTG+GGG | + | chr3.2:83783851-83783870 | None:intergenic | 40.0% |
!!! | GTATAGGAGTTGGTGGTTTT+AGG | + | chr3.2:83783777-83783796 | None:intergenic | 40.0% |
AACAATCCTCTTTGTTGGGC+AGG | - | chr3.2:83784993-83785012 | MS.gene052170:CDS | 45.0% | |
ACACACCTTGGATGAAAGAG+AGG | + | chr3.2:83782988-83783007 | None:intergenic | 45.0% | |
ACCGGAACAATCCTCTTTGT+TGG | - | chr3.2:83784988-83785007 | MS.gene052170:CDS | 45.0% | |
AGCAGCATCAGATAGGATGA+TGG | + | chr3.2:83782948-83782967 | None:intergenic | 45.0% | |
CAGGTAAGTATAGGAGTTGG+TGG | + | chr3.2:83783784-83783803 | None:intergenic | 45.0% | |
CCCAACAAAGAGGATTGTTC+CGG | + | chr3.2:83784992-83785011 | None:intergenic | 45.0% | |
CCGGAACAATCCTCTTTGTT+GGG | - | chr3.2:83784989-83785008 | MS.gene052170:CDS | 45.0% | |
CCTACGATCAACACCCATAA+AGG | - | chr3.2:83783723-83783742 | MS.gene052170:intron | 45.0% | |
CTCTTTCATCCAAGGTGTGT+GGG | - | chr3.2:83782988-83783007 | MS.gene052170:CDS | 45.0% | |
GACCATGGTAAGGGAAACTT+TGG | + | chr3.2:83782750-83782769 | None:intergenic | 45.0% | |
GATCGTAGGTGTGTCTTTGT+TGG | + | chr3.2:83783700-83783719 | None:intergenic | 45.0% | |
GCGTGTGTGTGTATATAGCA+TGG | - | chr3.2:83783432-83783451 | MS.gene052170:CDS | 45.0% | |
GCTACAAAGTCTTCTCGATG+TGG | + | chr3.2:83784931-83784950 | None:intergenic | 45.0% | |
GGTCAGGTAAGTATAGGAGT+TGG | + | chr3.2:83783787-83783806 | None:intergenic | 45.0% | |
GGTCATGAAGGGAACTTTGA+CGG | + | chr3.2:83784455-83784474 | None:intergenic | 45.0% | |
GTCAACTTTGGTTGAGAAGC+TGG | - | chr3.2:83784600-83784619 | MS.gene052170:intron | 45.0% | |
TCTCTTTCATCCAAGGTGTG+TGG | - | chr3.2:83782987-83783006 | MS.gene052170:CDS | 45.0% | |
TTGATCGTAGGTGTGATCGT+AGG | + | chr3.2:83783714-83783733 | None:intergenic | 45.0% | |
TTTGATCAACCCACACACCT+TGG | + | chr3.2:83783000-83783019 | None:intergenic | 45.0% | |
! | CTATCTGATGCTGCTTCTTC+CGG | - | chr3.2:83782953-83782972 | MS.gene052170:CDS | 45.0% |
! | GATGGTCAGTGGATTTGGAT+CGG | + | chr3.2:83782898-83782917 | None:intergenic | 45.0% |
! | GGTTGATTCATCGTGAAGGA+CGG | + | chr3.2:83782717-83782736 | None:intergenic | 45.0% |
! | GTTGAGATGGTCAGTGGATT+TGG | + | chr3.2:83782903-83782922 | None:intergenic | 45.0% |
! | TGGTGGTTGATTCATCGTGA+AGG | + | chr3.2:83782721-83782740 | None:intergenic | 45.0% |
!! | CCTTTATGGGTGTTGATCGT+AGG | + | chr3.2:83783726-83783745 | None:intergenic | 45.0% |
!! | GGAAACTTTGGTTTGGTTGG+TGG | + | chr3.2:83782738-83782757 | None:intergenic | 45.0% |
!!! | TGTTCTTTTGGGGTGAGTAG+TGG | + | chr3.2:83783841-83783860 | None:intergenic | 45.0% |
!! | AAATTATACTTATAAAAATT+TGG | + | chr3.2:83783551-83783570 | None:intergenic | 5.0% |
AGCGTAACTTGGAGTGACAG+CGG | + | chr3.2:83782818-83782837 | None:intergenic | 50.0% | |
CAGGTGCTCAATCCTCTTGT+TGG | - | chr3.2:83785012-83785031 | MS.gene052170:CDS | 50.0% | |
CGGAAGAAGCAGCATCAGAT+AGG | + | chr3.2:83782955-83782974 | None:intergenic | 50.0% | |
GACAGTCCATCCTTTGCATC+TGG | + | chr3.2:83784583-83784602 | None:intergenic | 50.0% | |
GAGGCGTATGCTAAAGTAGC+AGG | + | chr3.2:83784011-83784030 | None:intergenic | 50.0% | |
GATGGAGTTGAGATGGTCAG+TGG | + | chr3.2:83782909-83782928 | None:intergenic | 50.0% | |
GGAAACAAGATGAGAGGCGA+TGG | + | chr3.2:83782927-83782946 | None:intergenic | 50.0% | |
TCCAGAAGCTGTTGTTGCGT+GGG | + | chr3.2:83782869-83782888 | None:intergenic | 50.0% | |
TGGGCTGAAGAAGAGGCAAA+TGG | - | chr3.2:83784280-83784299 | MS.gene052170:intron | 50.0% | |
CCAAGTTACGCTCAGCCTCA+TGG | - | chr3.2:83782826-83782845 | MS.gene052170:CDS | 55.0% | |
CCATGAGGCTGAGCGTAACT+TGG | + | chr3.2:83782829-83782848 | None:intergenic | 55.0% | |
CCTCGCCTCTCTTTCATCCA+AGG | - | chr3.2:83782980-83782999 | MS.gene052170:CDS | 55.0% | |
CCTTGGATGAAAGAGAGGCG+AGG | + | chr3.2:83782983-83783002 | None:intergenic | 55.0% | |
GAGAGGCGATGGAGTTGAGA+TGG | + | chr3.2:83782916-83782935 | None:intergenic | 55.0% | |
GTCCAGAAGCTGTTGTTGCG+TGG | + | chr3.2:83782870-83782889 | None:intergenic | 55.0% | |
TCCCACGCAACAACAGCTTC+TGG | - | chr3.2:83782865-83782884 | MS.gene052170:CDS | 55.0% | |
TGAGCACCTGCCCAACAAAG+AGG | + | chr3.2:83785002-83785021 | None:intergenic | 55.0% | |
! | GGTCAGTGGATTTGGATCGG+AGG | + | chr3.2:83782895-83782914 | None:intergenic | 55.0% |
! | TCTGATGCTGCTTCTTCCGG+CGG | - | chr3.2:83782956-83782975 | MS.gene052170:CDS | 55.0% |
CTCATGGCTGCTGCCTCTGA+GGG | - | chr3.2:83782842-83782861 | MS.gene052170:CDS | 60.0% | |
TTGTTGCGTGGGACCCTCAG+AGG | + | chr3.2:83782858-83782877 | None:intergenic | 60.0% | |
! | CTGATGCTGCTTCTTCCGGC+GGG | - | chr3.2:83782957-83782976 | MS.gene052170:CDS | 60.0% |
CCTCAGAGGCAGCAGCCATG+AGG | + | chr3.2:83782844-83782863 | None:intergenic | 65.0% | |
CCTCATGGCTGCTGCCTCTG+AGG | - | chr3.2:83782841-83782860 | MS.gene052170:CDS | 65.0% | |
GAAAGAGAGGCGAGGCCCGC+CGG | + | chr3.2:83782975-83782994 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 83782677 | 83785038 | 83782677 | ID=MS.gene052170 |
chr3.2 | mRNA | 83782677 | 83785038 | 83782677 | ID=MS.gene052170.t1;Parent=MS.gene052170 |
chr3.2 | exon | 83784613 | 83785038 | 83784613 | ID=MS.gene052170.t1.exon1;Parent=MS.gene052170.t1 |
chr3.2 | CDS | 83784613 | 83785038 | 83784613 | ID=cds.MS.gene052170.t1;Parent=MS.gene052170.t1 |
chr3.2 | exon | 83782677 | 83783465 | 83782677 | ID=MS.gene052170.t1.exon2;Parent=MS.gene052170.t1 |
chr3.2 | CDS | 83782677 | 83783465 | 83782677 | ID=cds.MS.gene052170.t1;Parent=MS.gene052170.t1 |
Gene Sequence |
Protein sequence |