AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052170.t1 MTR_8g027395 69.773 397 113 4 9 404 7 397 0.0 545
MS.gene052170.t1 MTR_3g101010 71.576 387 108 2 18 404 5 389 0.0 539
MS.gene052170.t1 MTR_3g018740 69.666 389 112 4 15 402 3 386 0.0 531
MS.gene052170.t1 MTR_4g045707 66.925 387 124 4 18 404 6 388 0.0 511
MS.gene052170.t1 MTR_8g027420 65.206 388 118 4 17 404 5 375 3.32e-172 486
MS.gene052170.t1 MTR_3g101030 61.634 404 133 5 19 404 30 429 1.30e-171 486
MS.gene052170.t1 MTR_2g045980 64.175 388 130 4 18 402 5 386 4.58e-171 483
MS.gene052170.t1 MTR_2g046030 64.175 388 130 4 18 402 5 386 6.50e-171 483
MS.gene052170.t1 MTR_8g461160 64.010 389 134 4 18 402 6 392 3.87e-170 481
MS.gene052170.t1 MTR_4g088535 63.144 388 121 4 16 403 5 370 4.69e-169 478
MS.gene052170.t1 MTR_3g101180 61.905 399 140 6 15 403 3 399 6.88e-169 478
MS.gene052170.t1 MTR_3g048000 60.437 412 133 5 1 403 1 391 1.05e-167 475
MS.gene052170.t1 MTR_7g451890 60.448 402 150 5 10 404 3 402 4.59e-167 474
MS.gene052170.t1 MTR_4g088525 65.312 369 118 4 37 403 8 368 2.37e-166 471
MS.gene052170.t1 MTR_7g050750 61.381 391 145 4 18 404 8 396 2.24e-164 467
MS.gene052170.t1 MTR_3g101130 60.459 392 146 4 16 404 4 389 1.00e-163 465
MS.gene052170.t1 MTR_7g047780 60.199 402 151 5 10 404 3 402 2.18e-163 464
MS.gene052170.t1 MTR_7g050810 59.214 407 149 6 9 404 4 404 5.62e-160 456
MS.gene052170.t1 MTR_3g015620 61.084 406 126 6 1 402 1 378 4.71e-158 450
MS.gene052170.t1 MTR_3g101050 62.183 394 124 9 14 402 23 396 2.75e-149 429
MS.gene052170.t1 MTR_3g102920 56.188 404 130 7 10 403 43 409 3.97e-140 406
MS.gene052170.t1 MTR_3g100520 84.685 222 21 1 183 404 1 209 3.94e-133 380
MS.gene052170.t1 MTR_3g101200 52.525 396 159 5 10 403 23 391 4.45e-125 367
MS.gene052170.t1 MTR_3g101190 54.521 365 101 5 40 404 13 312 1.16e-124 363
MS.gene052170.t1 MTR_3g100995 66.148 257 80 4 149 404 14 264 4.47e-119 347
MS.gene052170.t1 MTR_3g100010 52.260 354 111 6 7 320 1 336 5.44e-110 327
MS.gene052170.t1 MTR_7g050830 51.840 326 121 5 9 310 5 318 6.18e-106 316
MS.gene052170.t1 MTR_3g018747 63.359 262 78 4 142 402 9 253 1.60e-105 312
MS.gene052170.t1 MTR_3g015760 56.250 288 106 5 123 402 4 279 5.85e-101 301
MS.gene052170.t1 MTR_3g111160 65.919 223 72 3 183 404 1 220 1.57e-88 267
MS.gene052170.t1 MTR_3g101110 57.741 239 67 4 145 378 71 280 1.53e-85 262
MS.gene052170.t1 MTR_3g114310 41.266 395 211 11 23 404 24 410 2.26e-84 263
MS.gene052170.t1 MTR_2g046410 63.768 207 69 3 199 402 144 347 1.27e-80 251
MS.gene052170.t1 MTR_3g099970 60.606 198 59 3 142 339 20 198 2.86e-79 243
MS.gene052170.t1 MTR_3g111150 57.222 180 49 2 21 198 2 155 7.45e-65 205
MS.gene052170.t1 MTR_3g101020 56.842 190 51 4 216 404 1 160 1.71e-63 201
MS.gene052170.t1 MTR_3g100990 82.677 127 22 0 16 142 3 129 4.95e-62 208
MS.gene052170.t1 MTR_3g102870 66.000 150 49 2 205 354 1 148 7.93e-62 197
MS.gene052170.t1 MTR_3g101150 61.250 160 56 3 248 403 1 158 6.03e-58 187
MS.gene052170.t1 MTR_4g093550 63.095 84 31 0 18 101 6 89 2.45e-27 104
MS.gene052170.t1 MTR_6g046890 57.500 80 24 2 35 104 16 95 8.38e-20 85.5
MS.gene052170.t1 MTR_3g101140 63.768 69 24 1 337 404 48 116 4.72e-17 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052170.t1 AT1G47710 51.680 387 184 3 18 402 5 390 1.19e-141 409
MS.gene052170.t1 AT1G47710 51.680 387 184 3 18 402 32 417 4.45e-141 409
MS.gene052170.t1 AT3G45220 47.328 393 191 6 18 401 5 390 7.44e-125 366
MS.gene052170.t1 AT2G25240 47.423 388 190 7 18 401 5 382 5.22e-120 353
MS.gene052170.t1 AT2G26390 46.096 397 186 9 18 401 5 386 4.19e-116 344
MS.gene052170.t1 AT1G62170 41.730 393 193 8 18 401 66 431 1.58e-102 311
MS.gene052170.t1 AT1G64030 41.795 390 198 6 18 401 5 371 4.08e-99 300
MS.gene052170.t1 AT2G14540 42.821 397 198 7 10 401 25 397 2.36e-97 296
MS.gene052170.t1 AT2G35580 40.196 408 200 10 1 401 1 371 7.72e-97 294
MS.gene052170.t1 AT1G62170 38.498 426 193 9 18 401 66 464 2.19e-95 293
MS.gene052170.t1 AT1G64010 46.364 220 92 5 183 401 1 195 1.40e-58 190
MS.gene052170.t1 AT1G64010 44.660 206 88 5 197 401 1 181 2.55e-50 168
MS.gene052170.t1 AT1G62160 38.222 225 105 7 184 401 21 218 3.23e-32 121
MS.gene052170.t1 AT1G63280 48.696 115 55 2 142 254 8 120 8.87e-31 114
MS.gene052170.t1 AT1G51330 47.748 111 55 2 141 248 30 140 1.41e-25 103
MS.gene052170.t1 AT1G64020 34.783 115 66 4 23 132 10 120 6.57e-14 68.6

Find 97 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATGCAATGTACTTTAA+AGG 0.146186 3.2:-83783332 MS.gene052170:CDS
TGATTAAAGAAGTGAATTTA+TGG 0.223064 3.2:-83783433 MS.gene052170:CDS
TCATCTTCGCCTTGATTATA+AGG 0.237108 3.2:+83783164 None:intergenic
TCCAATAAACCGTTTCTTAT+AGG 0.238320 3.2:+83783217 None:intergenic
GAGTAATAATTTCTTTAATA+AGG 0.258043 3.2:+83783390 None:intergenic
GTTAGGTTGTTGACTGAATT+TGG 0.264199 3.2:+83783368 None:intergenic
TCCTATAAGAAACGGTTTAT+TGG 0.267830 3.2:-83783218 MS.gene052170:CDS
TGACGGAGCTACCATTTAAA+AGG 0.273055 3.2:+83783258 None:intergenic
CCAAGATTCAATATTTCGTT+TGG 0.303904 3.2:-83782999 MS.gene052170:CDS
TGCATTTGCAAATATGAGTT+TGG 0.309749 3.2:+83783346 None:intergenic
GTTGAGATGGTCAGTGGATT+TGG 0.313863 3.2:+83784793 None:intergenic
CTATCTGATGCTGCTTCTTC+CGG 0.324419 3.2:-83784740 MS.gene052170:CDS
AAACTTCTCTAATTAGAAAT+AGG 0.325707 3.2:+83782730 None:intergenic
GAAATATGTTGGAAACATAT+AGG 0.352361 3.2:+83782877 None:intergenic
TATGAAAACATACCTTGTTC+TGG 0.356984 3.2:+83784600 None:intergenic
TCCCACGCAACAACAGCTTC+TGG 0.368338 3.2:-83784828 MS.gene052170:CDS
GTCAACTTTGGTTGAGAAGC+TGG 0.373900 3.2:-83783093 MS.gene052170:CDS
GAAGGAAGGTTGAAGAGAAA+TGG 0.376988 3.2:+83784673 None:intergenic
CTCTTTCATCCAAGGTGTGT+GGG 0.385352 3.2:-83784705 MS.gene052170:CDS
GATTAAAGAAGTGAATTTAT+GGG 0.386003 3.2:-83783432 MS.gene052170:CDS
ATTAGCCACAATTTCTTTGA+AGG 0.395580 3.2:+83784655 None:intergenic
CAAGATTCAATATTTCGTTT+GGG 0.400361 3.2:-83782998 MS.gene052170:CDS
GGAAACTTTGGTTTGGTTGG+TGG 0.403182 3.2:+83784958 None:intergenic
GACAGTCCATCCTTTGCATC+TGG 0.405033 3.2:+83783113 None:intergenic
CAGGTGCTCAATCCTCTTGT+TGG 0.408553 3.2:-83782681 MS.gene052170:CDS
CTTTGTCTTCCTTATAATCA+AGG 0.415705 3.2:-83783173 MS.gene052170:CDS
CCTCATGGCTGCTGCCTCTG+AGG 0.417264 3.2:-83784852 MS.gene052170:CDS
CCATGAGGCTGAGCGTAACT+TGG 0.418916 3.2:+83784867 None:intergenic
TCCGTTTGTTGATTGATTCA+CGG 0.423037 3.2:+83785008 None:intergenic
ACCGGAACAATCCTCTTTGT+TGG 0.428785 3.2:-83782705 MS.gene052170:CDS
GAAAGAGAGGCGAGGCCCGC+CGG 0.429775 3.2:+83784721 None:intergenic
GACCATGGTAAGGGAAACTT+TGG 0.431672 3.2:+83784946 None:intergenic
GAAAGATTTGTGAAATATGT+TGG 0.433321 3.2:+83782866 None:intergenic
AACAATCCTCTTTGTTGGGC+AGG 0.435386 3.2:-83782700 MS.gene052170:CDS
CTCATGGCTGCTGCCTCTGA+GGG 0.435904 3.2:-83784851 MS.gene052170:CDS
TTGCAAATATGAGTTTGGTT+AGG 0.436046 3.2:+83783351 None:intergenic
AAGGGAAACTTTGGTTTGGT+TGG 0.440125 3.2:+83784955 None:intergenic
CCGGAACAATCCTCTTTGTT+GGG 0.441601 3.2:-83782704 MS.gene052170:CDS
CCAAACGAAATATTGAATCT+TGG 0.448102 3.2:+83782999 None:intergenic
TAATGATTATAAAGCCACTT+TGG 0.450703 3.2:-83784636 MS.gene052170:CDS
CACTTCTTTAATCACTTCAC+TGG 0.457017 3.2:+83783442 None:intergenic
TTCATTGAAGTAAATGAAGA+AGG 0.457204 3.2:-83782846 MS.gene052170:CDS
CCGTTTGTTGATTGATTCAC+GGG 0.460807 3.2:+83785009 None:intergenic
ACTGATACGATGAAGGAGTT+AGG 0.462036 3.2:-83782966 MS.gene052170:CDS
CCCAACAAAGAGGATTGTTC+CGG 0.470616 3.2:+83782704 None:intergenic
CGGAAGAAGCAGCATCAGAT+AGG 0.486728 3.2:+83784741 None:intergenic
AGAGATGTTTGACCATGGTA+AGG 0.494445 3.2:+83784936 None:intergenic
TTTCTTATAGGAGGTCATGA+AGG 0.498012 3.2:+83783229 None:intergenic
TGGTAAGGGAAACTTTGGTT+TGG 0.501909 3.2:+83784951 None:intergenic
ACCTTCCTTCAAAGAAATTG+TGG 0.502391 3.2:-83784660 MS.gene052170:CDS
CCTCGCCTCTCTTTCATCCA+AGG 0.508325 3.2:-83784713 MS.gene052170:CDS
GTAAAACCTCCAGAAGAGAA+AGG 0.510977 3.2:+83782933 None:intergenic
GCCACAATTTCTTTGAAGGA+AGG 0.512461 3.2:+83784659 None:intergenic
AATAAACCGTTTCTTATAGG+AGG 0.518982 3.2:+83783220 None:intergenic
CCCGTGAATCAATCAACAAA+CGG 0.520413 3.2:-83785009 MS.gene052170:CDS
CAATGTACTTTAAAGGAACA+TGG 0.522199 3.2:-83783325 MS.gene052170:CDS
TCATGACCTCCTATAAGAAA+CGG 0.525564 3.2:-83783226 MS.gene052170:CDS
TCTCTTTCATCCAAGGTGTG+TGG 0.526400 3.2:-83784706 MS.gene052170:CDS
TTTCTTCCAGATGCAAAGGA+TGG 0.531417 3.2:-83783119 MS.gene052170:CDS
GACTGAGAAGTTTGATACTT+CGG 0.537810 3.2:-83783303 MS.gene052170:CDS
TCTGATGCTGCTTCTTCCGG+CGG 0.542664 3.2:-83784737 MS.gene052170:CDS
TTCAGTTGATTTCCAGAACA+AGG 0.543538 3.2:-83784612 MS.gene052170:intron
TTTGATCAACCCACACACCT+TGG 0.549446 3.2:+83784696 None:intergenic
GAATTTATGGGCTGAAGAAG+AGG 0.549526 3.2:-83783420 MS.gene052170:CDS
TTCTTATAGGAGGTCATGAA+GGG 0.550790 3.2:+83783230 None:intergenic
CTGATGCTGCTTCTTCCGGC+GGG 0.551412 3.2:-83784736 MS.gene052170:CDS
TCCAGAAGCTGTTGTTGCGT+GGG 0.552353 3.2:+83784827 None:intergenic
GTCCAGAAGCTGTTGTTGCG+TGG 0.552957 3.2:+83784826 None:intergenic
AAAGGATGGACTGTCAACTT+TGG 0.555822 3.2:-83783105 MS.gene052170:CDS
CCAAGTTACGCTCAGCCTCA+TGG 0.556554 3.2:-83784867 MS.gene052170:CDS
GGAAACAAGATGAGAGGCGA+TGG 0.556903 3.2:+83784769 None:intergenic
GGTCATGAAGGGAACTTTGA+CGG 0.559017 3.2:+83783241 None:intergenic
TGGGCTGAAGAAGAGGCAAA+TGG 0.561310 3.2:-83783413 MS.gene052170:CDS
AGCAGCATCAGATAGGATGA+TGG 0.563820 3.2:+83784748 None:intergenic
CTAATTAGAGAAGTTTCGAC+CGG 0.568701 3.2:-83782723 MS.gene052170:CDS
GAAGTTTGATACTTCGGTAA+CGG 0.571905 3.2:-83783297 MS.gene052170:CDS
GAGAGGCGATGGAGTTGAGA+TGG 0.573677 3.2:+83784780 None:intergenic
GAAATCAACTGAAGCCAAAG+TGG 0.575945 3.2:+83784622 None:intergenic
GGTTGATTCATCGTGAAGGA+CGG 0.577040 3.2:+83784979 None:intergenic
AGTTAAGATCATCCAACAAG+AGG 0.577438 3.2:+83782669 None:intergenic
TGAAACTACTGATACGATGA+AGG 0.578251 3.2:-83782973 MS.gene052170:CDS
GAGATGTTTGACCATGGTAA+GGG 0.580757 3.2:+83784937 None:intergenic
TCTCTAATTAGAAATAGGAA+AGG 0.584531 3.2:+83782735 None:intergenic
GATGGTCAGTGGATTTGGAT+CGG 0.592329 3.2:+83784798 None:intergenic
TTGTTGCGTGGGACCCTCAG+AGG 0.607840 3.2:+83784838 None:intergenic
TGAGCACCTGCCCAACAAAG+AGG 0.624187 3.2:+83782694 None:intergenic
AACCAAAGTTTCCCTTACCA+TGG 0.630609 3.2:-83784948 MS.gene052170:CDS
CCTCAGAGGCAGCAGCCATG+AGG 0.640062 3.2:+83784852 None:intergenic
TGGTGGTTGATTCATCGTGA+AGG 0.640526 3.2:+83784975 None:intergenic
GATGATGGAAACAAGATGAG+AGG 0.645061 3.2:+83784763 None:intergenic
TGAGAAGAGATGTTTGACCA+TGG 0.646563 3.2:+83784931 None:intergenic
ACACACCTTGGATGAAAGAG+AGG 0.656878 3.2:+83784708 None:intergenic
AGCGTAACTTGGAGTGACAG+CGG 0.664638 3.2:+83784878 None:intergenic
GCTACAAAGTCTTCTCGATG+TGG 0.664760 3.2:+83782765 None:intergenic
GGTCAGTGGATTTGGATCGG+AGG 0.671238 3.2:+83784801 None:intergenic
GATGGAGTTGAGATGGTCAG+TGG 0.682782 3.2:+83784787 None:intergenic
CCTTGGATGAAAGAGAGGCG+AGG 0.711185 3.2:+83784713 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATCAAAATAAAGAAAT+TGG - chr3.2:83783569-83783588 MS.gene052170:intron 10.0%
!!! TTAATTTGATATGATTTTAA+AGG - chr3.2:83784228-83784247 MS.gene052170:intron 10.0%
!! AAAAAACTAATTATTTGTGA+AGG + chr3.2:83783261-83783280 None:intergenic 15.0%
!! GAGTAATAATTTCTTTAATA+AGG + chr3.2:83784306-83784325 None:intergenic 15.0%
!!! AAAAAACTAATAGTTTGTTA+AGG + chr3.2:83783190-83783209 None:intergenic 15.0%
!!! TTCAAATTTTATAGTACAAA+AGG - chr3.2:83783975-83783994 MS.gene052170:intron 15.0%
!!! TTTTATTTCATAACCTAATT+TGG - chr3.2:83783293-83783312 MS.gene052170:CDS 15.0%
!! AAACTTCTCTAATTAGAAAT+AGG + chr3.2:83784966-83784985 None:intergenic 20.0%
!! AATTAACATGAAATAACATG+AGG + chr3.2:83783149-83783168 None:intergenic 20.0%
!! ATCAGAATATAAAACAATCA+AGG + chr3.2:83783865-83783884 None:intergenic 20.0%
!! ATTAACATGAAATAACATGA+GGG + chr3.2:83783148-83783167 None:intergenic 20.0%
!! GATTAAAGAAGTGAATTTAT+GGG - chr3.2:83784261-83784280 MS.gene052170:intron 20.0%
!! GTGAAAATTATGTTAACAAA+AGG - chr3.2:83784142-83784161 MS.gene052170:intron 20.0%
!! TAATACAATGCTAAATTAGT+TGG + chr3.2:83784121-83784140 None:intergenic 20.0%
!! TCAGAATATAAAACAATCAA+GGG + chr3.2:83783864-83783883 None:intergenic 20.0%
!! TGATTAAAGAAGTGAATTTA+TGG - chr3.2:83784260-83784279 MS.gene052170:intron 20.0%
!! TTGTACTATAAAATTTGAAG+AGG + chr3.2:83783974-83783993 None:intergenic 20.0%
!!! AGTGATTTTTACCTTTTAAA+TGG - chr3.2:83784424-83784443 MS.gene052170:intron 20.0%
!!! CTCTAAAATTATTTTAGATG+AGG + chr3.2:83784030-83784049 None:intergenic 20.0%
! AAATAAAGAAATTGGACAGA+TGG - chr3.2:83783577-83783596 MS.gene052170:intron 25.0%
! AATAAAGAAATTGGACAGAT+GGG - chr3.2:83783578-83783597 MS.gene052170:intron 25.0%
! AATAACGTTAGATCCAAATT+AGG + chr3.2:83783309-83783328 None:intergenic 25.0%
! AGCACAAATAATATTTGTGT+TGG - chr3.2:83783339-83783358 MS.gene052170:CDS 25.0%
! ATACACACTATTCAAAATGA+TGG + chr3.2:83783630-83783649 None:intergenic 25.0%
! CAAGATTCAATATTTCGTTT+GGG - chr3.2:83784695-83784714 MS.gene052170:CDS 25.0%
! CTTATTAAAAAAGTGGAAGT+AGG - chr3.2:83784658-83784677 MS.gene052170:CDS 25.0%
! GAAAGATTTGTGAAATATGT+TGG + chr3.2:83784830-83784849 None:intergenic 25.0%
! GAAATATGTTGGAAACATAT+AGG + chr3.2:83784819-83784838 None:intergenic 25.0%
! GCTTAAACATATTTGCATAT+TGG - chr3.2:83783482-83783501 MS.gene052170:intron 25.0%
! TAATGATTATAAAGCCACTT+TGG - chr3.2:83783057-83783076 MS.gene052170:CDS 25.0%
! TACACACTATTCAAAATGAT+GGG + chr3.2:83783629-83783648 None:intergenic 25.0%
! TCTCTAATTAGAAATAGGAA+AGG + chr3.2:83784961-83784980 None:intergenic 25.0%
! TCTTCCTCTTATTAAAAAAG+TGG - chr3.2:83784651-83784670 MS.gene052170:CDS 25.0%
! TTAATATATGGAGTGGAAAT+AGG + chr3.2:83783123-83783142 None:intergenic 25.0%
! TTCATTGAAGTAAATGAAGA+AGG - chr3.2:83784847-83784866 MS.gene052170:CDS 25.0%
!! CATTTTGAATAGTGTGTATT+TGG - chr3.2:83783631-83783650 MS.gene052170:intron 25.0%
!! GTATGAATTTGCTTTATATG+CGG - chr3.2:83783656-83783675 MS.gene052170:intron 25.0%
!! TGCTTTGATCAATTTAGAAT+TGG + chr3.2:83783915-83783934 None:intergenic 25.0%
!!! ACTTCCACTTTTTTAATAAG+AGG + chr3.2:83784658-83784677 None:intergenic 25.0%
!!! GGGATGATATTTATTTTGAT+GGG + chr3.2:83783755-83783774 None:intergenic 25.0%
!!! TATAGATGTCATTTTTTCAG+TGG + chr3.2:83783808-83783827 None:intergenic 25.0%
AATAAACCGTTTCTTATAGG+AGG + chr3.2:83784476-83784495 None:intergenic 30.0%
ACAAAGGTTTGTCACATATA+TGG + chr3.2:83783941-83783960 None:intergenic 30.0%
ATCTAGAAAACAGAAAGGAT+AGG + chr3.2:83784098-83784117 None:intergenic 30.0%
ATTAGCCACAATTTCTTTGA+AGG + chr3.2:83783041-83783060 None:intergenic 30.0%
CCAAACGAAATATTGAATCT+TGG + chr3.2:83784697-83784716 None:intergenic 30.0%
CCAAGATTCAATATTTCGTT+TGG - chr3.2:83784694-83784713 MS.gene052170:CDS 30.0%
CTTTGTCTTCCTTATAATCA+AGG - chr3.2:83784520-83784539 MS.gene052170:intron 30.0%
GCAAATGCAATGTACTTTAA+AGG - chr3.2:83784361-83784380 MS.gene052170:intron 30.0%
TATGAAAACATACCTTGTTC+TGG + chr3.2:83783096-83783115 None:intergenic 30.0%
TCCAATAAACCGTTTCTTAT+AGG + chr3.2:83784479-83784498 None:intergenic 30.0%
TCCTATAAGAAACGGTTTAT+TGG - chr3.2:83784475-83784494 MS.gene052170:intron 30.0%
TGCATTTGCAAATATGAGTT+TGG + chr3.2:83784350-83784369 None:intergenic 30.0%
TGGGAAAACATTATACATAC+AGG + chr3.2:83783610-83783629 None:intergenic 30.0%
TTGCAAATATGAGTTTGGTT+AGG + chr3.2:83784345-83784364 None:intergenic 30.0%
TTTGAATAGTGTGTATTTGG+AGG - chr3.2:83783634-83783653 MS.gene052170:intron 30.0%
! ACATGAGACCTTAATGTTTT+AGG - chr3.2:83783392-83783411 MS.gene052170:CDS 30.0%
! CAATGTACTTTAAAGGAACA+TGG - chr3.2:83784368-83784387 MS.gene052170:intron 30.0%
! TATTTTTCTTCCAGATGCAA+AGG - chr3.2:83784570-83784589 MS.gene052170:intron 30.0%
!! AACATGAGGGCATTAATATA+TGG + chr3.2:83783135-83783154 None:intergenic 30.0%
!! TCTTTGTTGGAGTTTGTTTT+CGG + chr3.2:83783687-83783706 None:intergenic 30.0%
!! TTCTGGAGGTTTTACAAAAA+TGG - chr3.2:83784768-83784787 MS.gene052170:CDS 30.0%
!!! GGGGATGATATTTATTTTGA+TGG + chr3.2:83783756-83783775 None:intergenic 30.0%
ACCTTCCTTCAAAGAAATTG+TGG - chr3.2:83783033-83783052 MS.gene052170:CDS 35.0%
ATGCAAATATGTTTAAGCGC+TGG + chr3.2:83783480-83783499 None:intergenic 35.0%
CACTTCTTTAATCACTTCAC+TGG + chr3.2:83784254-83784273 None:intergenic 35.0%
CCAACCAACCTAAAACATTA+AGG + chr3.2:83783403-83783422 None:intergenic 35.0%
CTAATTAGAGAAGTTTCGAC+CGG - chr3.2:83784970-83784989 MS.gene052170:CDS 35.0%
GAAGTTTGATACTTCGGTAA+CGG - chr3.2:83784396-83784415 MS.gene052170:intron 35.0%
GACTGAGAAGTTTGATACTT+CGG - chr3.2:83784390-83784409 MS.gene052170:intron 35.0%
GTTGGATCTAGAAAACAGAA+AGG + chr3.2:83784103-83784122 None:intergenic 35.0%
TCATCTTCGCCTTGATTATA+AGG + chr3.2:83784532-83784551 None:intergenic 35.0%
TCATGACCTCCTATAAGAAA+CGG - chr3.2:83784467-83784486 MS.gene052170:intron 35.0%
TGAAACTACTGATACGATGA+AGG - chr3.2:83784720-83784739 MS.gene052170:CDS 35.0%
TTCTTATAGGAGGTCATGAA+GGG + chr3.2:83784466-83784485 None:intergenic 35.0%
TTTCTTATAGGAGGTCATGA+AGG + chr3.2:83784467-83784486 None:intergenic 35.0%
! ATTTTACCTTTCTCTTCTGG+AGG - chr3.2:83784754-83784773 MS.gene052170:CDS 35.0%
! CGGTTTATTGGAGATTTTGA+TGG - chr3.2:83784487-83784506 MS.gene052170:intron 35.0%
! GTGATTTTACCTTTCTCTTC+TGG - chr3.2:83784751-83784770 MS.gene052170:CDS 35.0%
! GTTAGGTTGTTGACTGAATT+TGG + chr3.2:83784328-83784347 None:intergenic 35.0%
! TCCGTTTGTTGATTGATTCA+CGG + chr3.2:83782688-83782707 None:intergenic 35.0%
! TGGAGGTTTTACAAAAATGG+TGG - chr3.2:83784771-83784790 MS.gene052170:CDS 35.0%
! TTCAGTTGATTTCCAGAACA+AGG - chr3.2:83783081-83783100 MS.gene052170:CDS 35.0%
!! AAGAGGCGTTTCAATAACAA+AGG + chr3.2:83783957-83783976 None:intergenic 35.0%
!! CTTTGTTGGAGTTTGTTTTC+GGG + chr3.2:83783686-83783705 None:intergenic 35.0%
!! GAGACCTTAATGTTTTAGGT+TGG - chr3.2:83783396-83783415 MS.gene052170:CDS 35.0%
!!! AACAATCAAGGGTGTTCTTT+TGG + chr3.2:83783853-83783872 None:intergenic 35.0%
!!! AATGGTGGATTCTTCTTTTG+TGG - chr3.2:83784786-83784805 MS.gene052170:CDS 35.0%
!!! ACAATCAAGGGTGTTCTTTT+GGG + chr3.2:83783852-83783871 None:intergenic 35.0%
!!! ATGGTGGATTCTTCTTTTGT+GGG - chr3.2:83784787-83784806 MS.gene052170:CDS 35.0%
!!! ATGTCATTTTTTCAGTGGTC+AGG + chr3.2:83783803-83783822 None:intergenic 35.0%
!!! CCTTAATGTTTTAGGTTGGT+TGG - chr3.2:83783400-83783419 MS.gene052170:CDS 35.0%
!!! TATAGGAGTTGGTGGTTTTA+GGG + chr3.2:83783776-83783795 None:intergenic 35.0%
AAAGAAATTGGACAGATGGG+TGG - chr3.2:83783581-83783600 MS.gene052170:intron 40.0%
AACCAAAGTTTCCCTTACCA+TGG - chr3.2:83782745-83782764 MS.gene052170:CDS 40.0%
ACTGATACGATGAAGGAGTT+AGG - chr3.2:83784727-83784746 MS.gene052170:CDS 40.0%
AGAGATGTTTGACCATGGTA+AGG + chr3.2:83782760-83782779 None:intergenic 40.0%
ATAGCACACGTTCATGACTT+TGG - chr3.2:83783883-83783902 MS.gene052170:intron 40.0%
CCCGTGAATCAATCAACAAA+CGG - chr3.2:83782684-83782703 MS.gene052170:CDS 40.0%
GAAATCAACTGAAGCCAAAG+TGG + chr3.2:83783074-83783093 None:intergenic 40.0%
GAAGGAAGGTTGAAGAGAAA+TGG + chr3.2:83783023-83783042 None:intergenic 40.0%
GAGATGTTTGACCATGGTAA+GGG + chr3.2:83782759-83782778 None:intergenic 40.0%
GTAAAACCTCCAGAAGAGAA+AGG + chr3.2:83784763-83784782 None:intergenic 40.0%
TGACGGAGCTACCATTTAAA+AGG + chr3.2:83784438-83784457 None:intergenic 40.0%
TGAGAAGAGATGTTTGACCA+TGG + chr3.2:83782765-83782784 None:intergenic 40.0%
TGGTAAGGGAAACTTTGGTT+TGG + chr3.2:83782745-83782764 None:intergenic 40.0%
TTCAGTGGTCAGGTAAGTAT+AGG + chr3.2:83783793-83783812 None:intergenic 40.0%
TTTCTTCCAGATGCAAAGGA+TGG - chr3.2:83784574-83784593 MS.gene052170:intron 40.0%
! CCGTTTGTTGATTGATTCAC+GGG + chr3.2:83782687-83782706 None:intergenic 40.0%
! GAATTTATGGGCTGAAGAAG+AGG - chr3.2:83784273-83784292 MS.gene052170:intron 40.0%
! GCCACAATTTCTTTGAAGGA+AGG + chr3.2:83783037-83783056 None:intergenic 40.0%
! GGTAGAACTTGCTCTAAATC+AGG + chr3.2:83783240-83783259 None:intergenic 40.0%
! TGATGGGTGTTGTCCTTTAT+GGG + chr3.2:83783739-83783758 None:intergenic 40.0%
! TTGATGGGTGTTGTCCTTTA+TGG + chr3.2:83783740-83783759 None:intergenic 40.0%
!! AAAGGATGGACTGTCAACTT+TGG - chr3.2:83784588-83784607 MS.gene052170:intron 40.0%
!! AAGGGAAACTTTGGTTTGGT+TGG + chr3.2:83782741-83782760 None:intergenic 40.0%
!! GAGGGCATTAATATATGGAG+TGG + chr3.2:83783130-83783149 None:intergenic 40.0%
!! GATGATGGAAACAAGATGAG+AGG + chr3.2:83782933-83782952 None:intergenic 40.0%
!!! ATAGGAGTTGGTGGTTTTAG+GGG + chr3.2:83783775-83783794 None:intergenic 40.0%
!!! CAATCAAGGGTGTTCTTTTG+GGG + chr3.2:83783851-83783870 None:intergenic 40.0%
!!! GTATAGGAGTTGGTGGTTTT+AGG + chr3.2:83783777-83783796 None:intergenic 40.0%
AACAATCCTCTTTGTTGGGC+AGG - chr3.2:83784993-83785012 MS.gene052170:CDS 45.0%
ACACACCTTGGATGAAAGAG+AGG + chr3.2:83782988-83783007 None:intergenic 45.0%
ACCGGAACAATCCTCTTTGT+TGG - chr3.2:83784988-83785007 MS.gene052170:CDS 45.0%
AGCAGCATCAGATAGGATGA+TGG + chr3.2:83782948-83782967 None:intergenic 45.0%
CAGGTAAGTATAGGAGTTGG+TGG + chr3.2:83783784-83783803 None:intergenic 45.0%
CCCAACAAAGAGGATTGTTC+CGG + chr3.2:83784992-83785011 None:intergenic 45.0%
CCGGAACAATCCTCTTTGTT+GGG - chr3.2:83784989-83785008 MS.gene052170:CDS 45.0%
CCTACGATCAACACCCATAA+AGG - chr3.2:83783723-83783742 MS.gene052170:intron 45.0%
CTCTTTCATCCAAGGTGTGT+GGG - chr3.2:83782988-83783007 MS.gene052170:CDS 45.0%
GACCATGGTAAGGGAAACTT+TGG + chr3.2:83782750-83782769 None:intergenic 45.0%
GATCGTAGGTGTGTCTTTGT+TGG + chr3.2:83783700-83783719 None:intergenic 45.0%
GCGTGTGTGTGTATATAGCA+TGG - chr3.2:83783432-83783451 MS.gene052170:CDS 45.0%
GCTACAAAGTCTTCTCGATG+TGG + chr3.2:83784931-83784950 None:intergenic 45.0%
GGTCAGGTAAGTATAGGAGT+TGG + chr3.2:83783787-83783806 None:intergenic 45.0%
GGTCATGAAGGGAACTTTGA+CGG + chr3.2:83784455-83784474 None:intergenic 45.0%
GTCAACTTTGGTTGAGAAGC+TGG - chr3.2:83784600-83784619 MS.gene052170:intron 45.0%
TCTCTTTCATCCAAGGTGTG+TGG - chr3.2:83782987-83783006 MS.gene052170:CDS 45.0%
TTGATCGTAGGTGTGATCGT+AGG + chr3.2:83783714-83783733 None:intergenic 45.0%
TTTGATCAACCCACACACCT+TGG + chr3.2:83783000-83783019 None:intergenic 45.0%
! CTATCTGATGCTGCTTCTTC+CGG - chr3.2:83782953-83782972 MS.gene052170:CDS 45.0%
! GATGGTCAGTGGATTTGGAT+CGG + chr3.2:83782898-83782917 None:intergenic 45.0%
! GGTTGATTCATCGTGAAGGA+CGG + chr3.2:83782717-83782736 None:intergenic 45.0%
! GTTGAGATGGTCAGTGGATT+TGG + chr3.2:83782903-83782922 None:intergenic 45.0%
! TGGTGGTTGATTCATCGTGA+AGG + chr3.2:83782721-83782740 None:intergenic 45.0%
!! CCTTTATGGGTGTTGATCGT+AGG + chr3.2:83783726-83783745 None:intergenic 45.0%
!! GGAAACTTTGGTTTGGTTGG+TGG + chr3.2:83782738-83782757 None:intergenic 45.0%
!!! TGTTCTTTTGGGGTGAGTAG+TGG + chr3.2:83783841-83783860 None:intergenic 45.0%
!! AAATTATACTTATAAAAATT+TGG + chr3.2:83783551-83783570 None:intergenic 5.0%
AGCGTAACTTGGAGTGACAG+CGG + chr3.2:83782818-83782837 None:intergenic 50.0%
CAGGTGCTCAATCCTCTTGT+TGG - chr3.2:83785012-83785031 MS.gene052170:CDS 50.0%
CGGAAGAAGCAGCATCAGAT+AGG + chr3.2:83782955-83782974 None:intergenic 50.0%
GACAGTCCATCCTTTGCATC+TGG + chr3.2:83784583-83784602 None:intergenic 50.0%
GAGGCGTATGCTAAAGTAGC+AGG + chr3.2:83784011-83784030 None:intergenic 50.0%
GATGGAGTTGAGATGGTCAG+TGG + chr3.2:83782909-83782928 None:intergenic 50.0%
GGAAACAAGATGAGAGGCGA+TGG + chr3.2:83782927-83782946 None:intergenic 50.0%
TCCAGAAGCTGTTGTTGCGT+GGG + chr3.2:83782869-83782888 None:intergenic 50.0%
TGGGCTGAAGAAGAGGCAAA+TGG - chr3.2:83784280-83784299 MS.gene052170:intron 50.0%
CCAAGTTACGCTCAGCCTCA+TGG - chr3.2:83782826-83782845 MS.gene052170:CDS 55.0%
CCATGAGGCTGAGCGTAACT+TGG + chr3.2:83782829-83782848 None:intergenic 55.0%
CCTCGCCTCTCTTTCATCCA+AGG - chr3.2:83782980-83782999 MS.gene052170:CDS 55.0%
CCTTGGATGAAAGAGAGGCG+AGG + chr3.2:83782983-83783002 None:intergenic 55.0%
GAGAGGCGATGGAGTTGAGA+TGG + chr3.2:83782916-83782935 None:intergenic 55.0%
GTCCAGAAGCTGTTGTTGCG+TGG + chr3.2:83782870-83782889 None:intergenic 55.0%
TCCCACGCAACAACAGCTTC+TGG - chr3.2:83782865-83782884 MS.gene052170:CDS 55.0%
TGAGCACCTGCCCAACAAAG+AGG + chr3.2:83785002-83785021 None:intergenic 55.0%
! GGTCAGTGGATTTGGATCGG+AGG + chr3.2:83782895-83782914 None:intergenic 55.0%
! TCTGATGCTGCTTCTTCCGG+CGG - chr3.2:83782956-83782975 MS.gene052170:CDS 55.0%
CTCATGGCTGCTGCCTCTGA+GGG - chr3.2:83782842-83782861 MS.gene052170:CDS 60.0%
TTGTTGCGTGGGACCCTCAG+AGG + chr3.2:83782858-83782877 None:intergenic 60.0%
! CTGATGCTGCTTCTTCCGGC+GGG - chr3.2:83782957-83782976 MS.gene052170:CDS 60.0%
CCTCAGAGGCAGCAGCCATG+AGG + chr3.2:83782844-83782863 None:intergenic 65.0%
CCTCATGGCTGCTGCCTCTG+AGG - chr3.2:83782841-83782860 MS.gene052170:CDS 65.0%
GAAAGAGAGGCGAGGCCCGC+CGG + chr3.2:83782975-83782994 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 83782677 83785038 83782677 ID=MS.gene052170
chr3.2 mRNA 83782677 83785038 83782677 ID=MS.gene052170.t1;Parent=MS.gene052170
chr3.2 exon 83784613 83785038 83784613 ID=MS.gene052170.t1.exon1;Parent=MS.gene052170.t1
chr3.2 CDS 83784613 83785038 83784613 ID=cds.MS.gene052170.t1;Parent=MS.gene052170.t1
chr3.2 exon 83782677 83783465 83782677 ID=MS.gene052170.t1.exon2;Parent=MS.gene052170.t1
chr3.2 CDS 83782677 83783465 83782677 ID=cds.MS.gene052170.t1;Parent=MS.gene052170.t1
Gene Sequence

>MS.gene052170

ATGGCTACCCGTGAATCAATCAACAAACGGAAAAGAACCGTCCTTCACGATGAATCAACCACCAACCAAACCAAAGTTTCCCTTACCATGGTCAAACATCTCTTCTCAAAAGAATCAGACAAGAACGTTGTATTTTCACCGCTGTCACTCCAAGTTACGCTCAGCCTCATGGCTGCTGCCTCTGAGGGTCCCACGCAACAACAGCTTCTGGACTTCCTCCGATCCAAATCCACTGACCATCTCAACTCCATCGCCTCTCATCTTGTTTCCATCATCCTATCTGATGCTGCTTCTTCCGGCGGGCCTCGCCTCTCTTTCATCCAAGGTGTGTGGGTTGATCAAACCATTTCTCTTCAACCTTCCTTCAAAGAAATTGTGGCTAATGATTATAAAGCCACTTTGGCTTCAGTTGATTTCCAGAACAAGGTATGTTTTCATATCTTCCTATTTCCACTCCATATATTAATGCCCTCATGTTATTTCATGTTAATTAATTAATTAAAAGTTCTACCTTAACAAACTATTAGTTTTTTTTTATATATTATTATTTTATTTCATAACCTGATTTAGAGCAAGTTCTACCTTCACAAATAATTAGTTTTTTTTATTATTATTATTTTATTTCATAACCTAATTTGGATCTAACGTTATTCTACATATGAAGCACAAATAATATTTGTGTTGGTTAATCTTAGATGAAGTGTGTGATTCATGAACATGAGACCTTAATGTTTTAGGTTGGTTGGTGTGTGCGTGCGTGTGTGTGTATATAGCATGGTTTAAGAGTGACTTTTTCAATTCCAGCGCTTAAACATATTTGCATATTGGTGTATTAAAAAAGATAAATTTAGTTTGTTACGATATGAAAGTGCCAAATTTTTATAAGTATAATTTTAATCAAAATAAAGAAATTGGACAGATGGGTGGACACCTGTATGTATAATGTTTTCCCATCATTTTGAATAGTGTGTATTTGGAGGTATGAATTTGCTTTATATGCGGAACACCCGAAAACAAACTCCAACAAAGACACACCTACGATCACACCTACGATCAACACCCATAAAGGACAACACCCATCAAAATAAATATCATCCCCTAAAACCACCAACTCCTATACTTACCTGACCACTGAAAAAATGACATCTATAACAATCGTCGCCACTACTCACCCCAAAAGAACACCCTTGATTGTTTTATATTCTGATAGCACACGTTCATGACTTTGGTAATTACCAATTCTAAATTGATCAAAGCAATTCCATATATGTGACAAACCTTTGTTATTGAAACGCCTCTTCAAATTTTATAGTACAAAAGGCATAAACTTTCCTGCTACTTTAGCATACGCCTCATCTAAAATAATTTTAGAGCAACAAGCATTAACTTCTATGAAAACAATTGAGAAATACAACTTTCCTATCCTTTCTGTTTTCTAGATCCAACTAATTTAGCATTGTATTATGTGAAAATTATGTTAACAAAAGGTTAATTTTTTCTATTGAAATACTTGTGAAAATAATTCAACTTATCTATTTACATAACTGATTTTTAATTTGATATGATTTTAAAGGCCAGTGAAGTGATTAAAGAAGTGAATTTATGGGCTGAAGAAGAGGCAAATGGCCTTATTAAAGAAATTATTACTCCAAATTCAGTCAACAACCTAACCAAACTCATATTTGCAAATGCAATGTACTTTAAAGGAACATGGACTGAGAAGTTTGATACTTCGGTAACGGAAGACAGTGATTTTTACCTTTTAAATGGTAGCTCCGTCAAAGTTCCCTTCATGACCTCCTATAAGAAACGGTTTATTGGAGATTTTGATGGTTTTAAAGTTCTTTGTCTTCCTTATAATCAAGGCGAAGATGAGCGTCAATTCTCTATGTATATTTTTCTTCCAGATGCAAAGGATGGACTGTCAACTTTGGTTGAGAAGCTGGCTTCTGAATTTGAGTTACTAGAACACAATCTTCCTCTTATTAAAAAAGTGGAAGTAGGTGAGTTCAAGATTCCAAGATTCAATATTTCGTTTGGGATTGAAACTACTGATACGATGAAGGAGTTAGGAGTGATTTTACCTTTCTCTTCTGGAGGTTTTACAAAAATGGTGGATTCTTCTTTTGTGGGTAAAAACCTATATGTTTCCAACATATTTCACAAATCTTTCATTGAAGTAAATGAAGAAGGCACTGAAGCTGCTGCATTCACTACTTATACAAATCGCAAATCACACAGAAAGTCATGTCCACATCGAGAAGACTTTGTAGCTGATCATCCTTTCCTATTTCTAATTAGAGAAGTTTCGACCGGAACAATCCTCTTTGTTGGGCAGGTGCTCAATCCTCTTGTTGGATGA

Protein sequence

>MS.gene052170.t1

MATRESINKRKRTVLHDESTTNQTKVSLTMVKHLFSKESDKNVVFSPLSLQVTLSLMAAASEGPTQQQLLDFLRSKSTDHLNSIASHLVSIILSDAASSGGPRLSFIQGVWVDQTISLQPSFKEIVANDYKATLASVDFQNKASEVIKEVNLWAEEEANGLIKEIITPNSVNNLTKLIFANAMYFKGTWTEKFDTSVTEDSDFYLLNGSSVKVPFMTSYKKRFIGDFDGFKVLCLPYNQGEDERQFSMYIFLPDAKDGLSTLVEKLASEFELLEHNLPLIKKVEVGEFKIPRFNISFGIETTDTMKELGVILPFSSGGFTKMVDSSFVGKNLYVSNIFHKSFIEVNEEGTEAAAFTTYTNRKSHRKSCPHREDFVADHPFLFLIREVSTGTILFVGQVLNPLVG