Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052218.t1 | XP_003601978.1 | 93.4 | 578 | 36 | 2 | 1 | 577 | 1 | 577 | 4.00E-300 | 1040 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052218.t1 | Q9MAH1 | 43.6 | 399 | 217 | 3 | 182 | 576 | 191 | 585 | 5.1e-86 | 320.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052218.t1 | G7J3U4 | 93.4 | 578 | 36 | 2 | 1 | 577 | 1 | 577 | 2.9e-300 | 1040.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene052218 | MS.gene86308 | PPI |
| MS.gene021587 | MS.gene052218 | PPI |
| MS.gene052218 | MS.gene015906 | PPI |
| MS.gene052218 | MS.gene54083 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052218.t1 | MTR_3g087480 | 96.194 | 578 | 20 | 2 | 1 | 577 | 1 | 577 | 0.0 | 1144 |
| MS.gene052218.t1 | MTR_3g074230 | 58.056 | 360 | 144 | 2 | 220 | 576 | 189 | 544 | 6.99e-143 | 427 |
| MS.gene052218.t1 | MTR_3g074230 | 58.056 | 360 | 144 | 2 | 220 | 576 | 189 | 544 | 2.10e-142 | 427 |
| MS.gene052218.t1 | MTR_5g063200 | 52.723 | 404 | 177 | 3 | 173 | 576 | 175 | 564 | 3.60e-141 | 424 |
| MS.gene052218.t1 | MTR_2g078020 | 48.267 | 375 | 187 | 1 | 209 | 576 | 208 | 582 | 5.82e-123 | 376 |
| MS.gene052218.t1 | MTR_2g078020 | 48.267 | 375 | 187 | 1 | 209 | 576 | 208 | 582 | 2.03e-122 | 377 |
| MS.gene052218.t1 | MTR_6g013475 | 79.231 | 130 | 23 | 2 | 88 | 216 | 3 | 129 | 5.32e-62 | 201 |
| MS.gene052218.t1 | MTR_4g076240 | 25.753 | 365 | 210 | 12 | 223 | 531 | 527 | 886 | 2.09e-21 | 99.4 |
| MS.gene052218.t1 | MTR_2g090135 | 34.921 | 126 | 73 | 2 | 459 | 575 | 101 | 226 | 1.43e-15 | 77.4 |
| MS.gene052218.t1 | MTR_7g090940 | 25.459 | 381 | 225 | 12 | 224 | 551 | 658 | 1032 | 1.96e-15 | 80.5 |
| MS.gene052218.t1 | MTR_7g059150 | 34.959 | 123 | 70 | 2 | 443 | 555 | 79 | 201 | 2.24e-14 | 73.9 |
| MS.gene052218.t1 | MTR_1g030300 | 31.034 | 145 | 98 | 1 | 204 | 348 | 165 | 307 | 1.94e-13 | 73.2 |
| MS.gene052218.t1 | MTR_3g452710 | 33.945 | 109 | 70 | 1 | 223 | 329 | 12 | 120 | 1.09e-12 | 71.2 |
| MS.gene052218.t1 | MTR_2g090135 | 37.255 | 102 | 56 | 2 | 459 | 552 | 101 | 202 | 1.54e-12 | 67.4 |
| MS.gene052218.t1 | MTR_3g452710 | 33.945 | 109 | 70 | 1 | 223 | 329 | 12 | 120 | 1.68e-12 | 70.1 |
| MS.gene052218.t1 | MTR_1g041435 | 28.571 | 105 | 75 | 0 | 460 | 564 | 15 | 119 | 4.04e-12 | 68.2 |
| MS.gene052218.t1 | MTR_1g084100 | 33.929 | 112 | 73 | 1 | 463 | 574 | 98 | 208 | 1.10e-11 | 67.8 |
| MS.gene052218.t1 | MTR_5g012030 | 32.673 | 101 | 68 | 0 | 460 | 560 | 396 | 496 | 1.29e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052218.t1 | AT5G65160 | 54.758 | 599 | 223 | 10 | 7 | 576 | 11 | 590 | 0.0 | 629 |
| MS.gene052218.t1 | AT5G10090 | 60.000 | 475 | 180 | 3 | 105 | 576 | 124 | 591 | 0.0 | 581 |
| MS.gene052218.t1 | AT1G78120 | 54.247 | 365 | 166 | 1 | 214 | 577 | 151 | 515 | 1.42e-127 | 385 |
| MS.gene052218.t1 | AT2G42580 | 49.859 | 355 | 174 | 1 | 221 | 571 | 219 | 573 | 5.87e-112 | 349 |
| MS.gene052218.t1 | AT1G78120 | 53.846 | 325 | 149 | 1 | 214 | 537 | 151 | 475 | 1.56e-108 | 334 |
| MS.gene052218.t1 | AT1G53300 | 46.537 | 361 | 187 | 3 | 221 | 576 | 226 | 585 | 1.49e-105 | 333 |
| MS.gene052218.t1 | AT3G58620 | 45.856 | 362 | 192 | 2 | 214 | 571 | 203 | 564 | 2.09e-103 | 326 |
| MS.gene052218.t1 | AT3G14950 | 44.722 | 360 | 195 | 1 | 221 | 576 | 257 | 616 | 2.41e-103 | 328 |
| MS.gene052218.t1 | AT3G58620 | 45.856 | 362 | 192 | 2 | 214 | 571 | 203 | 564 | 2.84e-103 | 327 |
| MS.gene052218.t1 | AT2G41520 | 25.587 | 426 | 241 | 17 | 217 | 575 | 545 | 961 | 7.58e-22 | 100 |
| MS.gene052218.t1 | AT2G41520 | 25.587 | 426 | 241 | 17 | 217 | 575 | 445 | 861 | 7.98e-22 | 100 |
| MS.gene052218.t1 | AT5G12430 | 26.371 | 383 | 229 | 12 | 223 | 556 | 609 | 987 | 1.87e-21 | 99.8 |
| MS.gene052218.t1 | AT2G41520 | 25.436 | 401 | 242 | 15 | 217 | 575 | 545 | 930 | 2.78e-16 | 83.2 |
| MS.gene052218.t1 | AT4G12400 | 25.140 | 358 | 236 | 11 | 223 | 568 | 3 | 340 | 4.99e-15 | 78.6 |
| MS.gene052218.t1 | AT4G12400 | 31.683 | 101 | 69 | 0 | 460 | 560 | 373 | 473 | 9.79e-11 | 65.1 |
| MS.gene052218.t1 | AT4G12400 | 25.140 | 358 | 236 | 11 | 223 | 568 | 3 | 340 | 5.15e-15 | 78.6 |
| MS.gene052218.t1 | AT1G04190 | 30.769 | 130 | 89 | 1 | 446 | 575 | 5 | 133 | 5.15e-13 | 70.9 |
| MS.gene052218.t1 | AT3G04240 | 25.143 | 350 | 215 | 10 | 234 | 556 | 167 | 496 | 8.93e-13 | 72.0 |
| MS.gene052218.t1 | AT4G30480 | 32.540 | 126 | 76 | 2 | 459 | 575 | 108 | 233 | 1.76e-12 | 68.6 |
| MS.gene052218.t1 | AT4G08320 | 34.694 | 98 | 64 | 0 | 213 | 310 | 166 | 263 | 4.86e-12 | 68.6 |
| MS.gene052218.t1 | AT4G08320 | 34.694 | 98 | 64 | 0 | 213 | 310 | 166 | 263 | 5.53e-12 | 68.6 |
| MS.gene052218.t1 | AT4G30480 | 36.559 | 93 | 52 | 1 | 459 | 544 | 108 | 200 | 3.91e-11 | 63.2 |
| MS.gene052218.t1 | AT1G56440 | 33.898 | 118 | 77 | 1 | 457 | 574 | 75 | 191 | 4.93e-11 | 65.5 |
| MS.gene052218.t1 | AT1G56440 | 33.898 | 118 | 77 | 1 | 457 | 574 | 85 | 201 | 5.01e-11 | 65.9 |
Find 113 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATGTTGTATGGAAATTT+AGG | 0.096719 | 3.2:+74623692 | MS.gene052218:CDS |
| ACCAATTGGTCCAAAGAATT+TGG | 0.157579 | 3.2:-74624889 | None:intergenic |
| AAAGAAGCTGTTGGTATTTC+AGG | 0.164915 | 3.2:+74623593 | MS.gene052218:CDS |
| GACGATTGTACCAAATTCTT+TGG | 0.195700 | 3.2:+74624879 | MS.gene052218:CDS |
| TTGTTTGCCATCTTGTTGTT+AGG | 0.206579 | 3.2:-74625104 | None:intergenic |
| CTATTTAATTCCTCATCTTC+TGG | 0.221444 | 3.2:-74625553 | None:intergenic |
| CTGCTTGTTTATAATGATAA+AGG | 0.245665 | 3.2:-74624330 | None:intergenic |
| GGATTAATGACAACAGTATT+TGG | 0.247419 | 3.2:+74623299 | MS.gene052218:CDS |
| ATGGAAATTTAGGGAATATT+AGG | 0.268159 | 3.2:+74623702 | MS.gene052218:CDS |
| GAACCACCACGTCGTCGTTT+TGG | 0.274837 | 3.2:-74623383 | None:intergenic |
| CTATCATCCGGTGCAGATTC+TGG | 0.287174 | 3.2:+74624475 | MS.gene052218:CDS |
| GAAATACCAACAGCTTCTTT+TGG | 0.293308 | 3.2:-74623590 | None:intergenic |
| CAGATTTGATGATGCTTTAG+AGG | 0.308396 | 3.2:+74625055 | MS.gene052218:intron |
| TCCAGAGCAGTTGAAAATAA+TGG | 0.313493 | 3.2:+74623925 | MS.gene052218:CDS |
| TTATGTTGTATGGAAATTTA+GGG | 0.317802 | 3.2:+74623693 | MS.gene052218:CDS |
| CTTCAACTGCTTTCTCCAAT+TGG | 0.321511 | 3.2:-74625295 | None:intergenic |
| TTTGGATCATTAACGTTGTT+TGG | 0.329256 | 3.2:-74623365 | None:intergenic |
| CCAGAGCAGTTGAAAATAAT+GGG | 0.331941 | 3.2:+74623926 | MS.gene052218:CDS |
| AGCTCTTCTCAACCTTGCTT+TGG | 0.339234 | 3.2:-74625354 | None:intergenic |
| ACCAAATTCTTTGGACCAAT+TGG | 0.343365 | 3.2:+74624888 | MS.gene052218:CDS |
| AATAAGAGTACTACTTCCTT+TGG | 0.349666 | 3.2:-74623651 | None:intergenic |
| GATTAGGAAATTTACACTTT+AGG | 0.360455 | 3.2:+74624146 | MS.gene052218:CDS |
| ATCATTAACGTTGTTTGGTA+TGG | 0.365292 | 3.2:-74623360 | None:intergenic |
| AACAAATTTGAATTACCAAT+TGG | 0.367828 | 3.2:-74624903 | None:intergenic |
| GATGAATTTGAAACCTTTGA+TGG | 0.375854 | 3.2:-74623530 | None:intergenic |
| TGTTTGCCATCTTGTTGTTA+GGG | 0.377926 | 3.2:-74625103 | None:intergenic |
| CAAAGTAAAATAGAGTTATA+TGG | 0.380890 | 3.2:-74625242 | None:intergenic |
| TGCACCGGATGATAGAGTTT+TGG | 0.382756 | 3.2:-74624467 | None:intergenic |
| ACTCTTATTCGCGCTTCGTC+TGG | 0.385363 | 3.2:+74623665 | MS.gene052218:CDS |
| GGAATTAAATAGAGCATTGT+TGG | 0.387923 | 3.2:+74625564 | MS.gene052218:CDS |
| TCCGAGGCTTGTGTTGCATA+TGG | 0.389783 | 3.2:+74625200 | MS.gene052218:CDS |
| TTCACTTTAGCAACCTCATC+AGG | 0.390431 | 3.2:-74624367 | None:intergenic |
| TGCTTGTTTATAATGATAAA+GGG | 0.398764 | 3.2:-74624329 | None:intergenic |
| AACCTTGCTTTGGTGTAAGA+TGG | 0.401622 | 3.2:-74625344 | None:intergenic |
| TCTGGCAATGTTATGTTGTA+TGG | 0.402824 | 3.2:+74623683 | MS.gene052218:CDS |
| CATAGAGCTCATCATCGATT+AGG | 0.403953 | 3.2:+74624130 | MS.gene052218:CDS |
| CACGTGGTGGTTCACTTTGT+AGG | 0.410155 | 3.2:+74623882 | MS.gene052218:CDS |
| TAGATCAAAACTCGGCCAAT+TGG | 0.421549 | 3.2:+74625280 | MS.gene052218:CDS |
| ATGGATTATAGATGGAAAGA+TGG | 0.427946 | 3.2:+74625488 | MS.gene052218:intron |
| TAGAGCATTGTTGGAGGCTC+GGG | 0.429040 | 3.2:+74625573 | MS.gene052218:CDS |
| TTCTACCTTCAACTTGTTGG+TGG | 0.437992 | 3.2:-74623855 | None:intergenic |
| TGCACTGAGGCTCGCAGGTT+AGG | 0.440976 | 3.2:+74624415 | MS.gene052218:CDS |
| TTCAAATTCATCAACTACTC+AGG | 0.449757 | 3.2:+74623541 | MS.gene052218:CDS |
| CTGCTTTAACTGCTCTTGGT+AGG | 0.450208 | 3.2:+74624053 | MS.gene052218:CDS |
| ATTTCGCCAGAGAGAAAATC+AGG | 0.454949 | 3.2:+74623272 | MS.gene052218:CDS |
| AGTGCTGCTTTAACTGCTCT+TGG | 0.456396 | 3.2:+74624049 | MS.gene052218:CDS |
| GTGACAGCTGCAAGAGGAAG+AGG | 0.456849 | 3.2:+74625149 | MS.gene052218:CDS |
| TTGAAGCTGTGTTTGAATGT+AGG | 0.462334 | 3.2:+74624080 | MS.gene052218:CDS |
| TGGATTATAGATGGAAAGAT+GGG | 0.467551 | 3.2:+74625489 | MS.gene052218:intron |
| TCATTAACGTTGTTTGGTAT+GGG | 0.474787 | 3.2:-74623359 | None:intergenic |
| ATCATCCACCAACAAGTTGA+AGG | 0.475755 | 3.2:+74623850 | MS.gene052218:CDS |
| AGGCTCGCAGGTTAGGAGAT+TGG | 0.476698 | 3.2:+74624422 | MS.gene052218:CDS |
| GAAAGATGGGAAGCTTCAAT+AGG | 0.478223 | 3.2:+74625502 | MS.gene052218:CDS |
| ATAGAGCATTGTTGGAGGCT+CGG | 0.486677 | 3.2:+74625572 | MS.gene052218:CDS |
| ACGTGGTGGTTCACTTTGTA+GGG | 0.489232 | 3.2:+74623883 | MS.gene052218:CDS |
| ACCTTGCTTTGGTGTAAGAT+GGG | 0.490732 | 3.2:-74625343 | None:intergenic |
| AATGCAAATTCAAATGCAAA+AGG | 0.491684 | 3.2:+74623785 | MS.gene052218:CDS |
| TAGGGCTATATCAACTAGAA+TGG | 0.493499 | 3.2:+74623901 | MS.gene052218:CDS |
| TGAAGCTGTGTTTGAATGTA+GGG | 0.506829 | 3.2:+74624081 | MS.gene052218:CDS |
| GTTGAAAATAATGGGGAATG+AGG | 0.512910 | 3.2:+74623934 | MS.gene052218:CDS |
| GGCAAACAAGGTGTTGAGAA+AGG | 0.512946 | 3.2:+74625118 | MS.gene052218:CDS |
| CAGATTAGGAGAAACGGATA+AGG | 0.517315 | 3.2:+74624306 | MS.gene052218:intron |
| ACCTCCAAAACTCTATCATC+CGG | 0.524405 | 3.2:+74624463 | MS.gene052218:CDS |
| TCCATATGCAACACAAGCCT+CGG | 0.527621 | 3.2:-74625201 | None:intergenic |
| ATTTGATGAACAAGAAGACT+TGG | 0.528008 | 3.2:-74623474 | None:intergenic |
| CTTTATCATTATAAACAAGC+AGG | 0.531498 | 3.2:+74624331 | MS.gene052218:CDS |
| TGCAATAGCTGCATCATACA+AGG | 0.535391 | 3.2:-74623990 | None:intergenic |
| CGGTGCAGATTCTGGTCCAC+AGG | 0.538291 | 3.2:+74624483 | MS.gene052218:CDS |
| TCAAATTCATCAACTACTCA+GGG | 0.541512 | 3.2:+74623542 | MS.gene052218:CDS |
| GTAAGTGCACTGAGGCTCGC+AGG | 0.542799 | 3.2:+74624410 | MS.gene052218:CDS |
| GCTTGTGTTGCATATGGAGA+AGG | 0.544027 | 3.2:+74625206 | MS.gene052218:CDS |
| GCTCAAGTTGATATAGCTGC+TGG | 0.549363 | 3.2:+74624936 | MS.gene052218:CDS |
| TGATTACAGATTAGGAGAAA+CGG | 0.553077 | 3.2:+74624300 | MS.gene052218:intron |
| AAGAGAGACACCAGAAGATG+AGG | 0.555582 | 3.2:+74625543 | MS.gene052218:CDS |
| AACGCCACGTGGACCATCAA+AGG | 0.559475 | 3.2:+74623517 | MS.gene052218:CDS |
| ATTAAATAGAGCATTGTTGG+AGG | 0.561915 | 3.2:+74625567 | MS.gene052218:CDS |
| ACTCAGGGGTATGTTAATCA+AGG | 0.567874 | 3.2:+74623557 | MS.gene052218:CDS |
| TGATGAGCTCTATGATAATG+AGG | 0.577068 | 3.2:-74624121 | None:intergenic |
| CCAGAGAGAAAATCAGGCTG+TGG | 0.577805 | 3.2:+74623278 | MS.gene052218:CDS |
| TAATAGTTATTCAAATGCAA+TGG | 0.579556 | 3.2:+74623739 | MS.gene052218:CDS |
| ACGACGTGGTGGTTCAAAAG+AGG | 0.580831 | 3.2:+74623391 | MS.gene052218:CDS |
| CTTGTGTTGCATATGGAGAA+GGG | 0.581028 | 3.2:+74625207 | MS.gene052218:CDS |
| AAGTTGATATAGCTGCTGGC+AGG | 0.584890 | 3.2:+74624940 | MS.gene052218:CDS |
| TAATGACAACAGTATTTGGA+AGG | 0.585909 | 3.2:+74623303 | MS.gene052218:CDS |
| TAACAACAAGATGGCAAACA+AGG | 0.586586 | 3.2:+74625106 | MS.gene052218:CDS |
| AAGAGCTGATTGTAATGCCA+AGG | 0.591062 | 3.2:+74625370 | MS.gene052218:CDS |
| CGAGCTGTGACAGCTGCAAG+AGG | 0.594817 | 3.2:+74625143 | MS.gene052218:CDS |
| ACTAGACCCTAACAACAAGA+TGG | 0.595527 | 3.2:+74625097 | MS.gene052218:CDS |
| GCAAATTCAAATGCAAAAGG+AGG | 0.597517 | 3.2:+74623788 | MS.gene052218:CDS |
| CAATCGTCAACATCAAAATG+AGG | 0.603192 | 3.2:-74624864 | None:intergenic |
| TGTCTGCATCTTGATGCCTA+CGG | 0.609966 | 3.2:-74624824 | None:intergenic |
| AGAGTTCCAAAAGAAGCTGT+TGG | 0.612914 | 3.2:+74623584 | MS.gene052218:CDS |
| TTATAAACAAGCAGGATCAG+AGG | 0.623703 | 3.2:+74624339 | MS.gene052218:CDS |
| GCCCATCTTACACCAAAGCA+AGG | 0.628552 | 3.2:+74625342 | MS.gene052218:CDS |
| AATTTAGGGAATATTAGGCA+AGG | 0.632462 | 3.2:+74623707 | MS.gene052218:CDS |
| GATCCAAAACGACGACGTGG+TGG | 0.632918 | 3.2:+74623380 | MS.gene052218:CDS |
| CTGTGGACCAGAATCTGCAC+CGG | 0.635581 | 3.2:-74624482 | None:intergenic |
| AGGGGTATGTTAATCAAGGT+AGG | 0.636580 | 3.2:+74623561 | MS.gene052218:CDS |
| AAGCGCTGATAAAACTCCGT+AGG | 0.646518 | 3.2:+74624808 | MS.gene052218:CDS |
| CAGAAAACGACAACGCCACG+TGG | 0.652747 | 3.2:+74623506 | MS.gene052218:CDS |
| ATCAGAGGCTGATCCTGATG+AGG | 0.654133 | 3.2:+74624354 | MS.gene052218:CDS |
| TGACAACAGTATTTGGAAGG+CGG | 0.657393 | 3.2:+74623306 | MS.gene052218:CDS |
| CAGAGCAGTTGAAAATAATG+GGG | 0.660016 | 3.2:+74623927 | MS.gene052218:CDS |
| GCAGCTTGTAGATCAAAACT+CGG | 0.660130 | 3.2:+74625272 | MS.gene052218:CDS |
| GAAACCTTTGATGGTCCACG+TGG | 0.673817 | 3.2:-74623521 | None:intergenic |
| CAAGGCATCGAAATTCTCCG+AGG | 0.675699 | 3.2:+74625184 | MS.gene052218:CDS |
| CAACTTAAGAAACAACGAGG+TGG | 0.710109 | 3.2:+74625598 | MS.gene052218:CDS |
| CAAATTCATCAACTACTCAG+GGG | 0.711670 | 3.2:+74623543 | MS.gene052218:CDS |
| AGCAGTTGAAGATTGTACTG+CGG | 0.725831 | 3.2:+74625307 | MS.gene052218:CDS |
| AATGATCCAAAACGACGACG+TGG | 0.732125 | 3.2:+74623377 | MS.gene052218:CDS |
| TCATTTAAGTAAGTGCACTG+AGG | 0.735333 | 3.2:+74624402 | MS.gene052218:CDS |
| TATGGGAGCAGAACCCACAG+AGG | 0.785471 | 3.2:-74623342 | None:intergenic |
| GCGCAACTTAAGAAACAACG+AGG | 0.792961 | 3.2:+74625595 | MS.gene052218:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGAATATTTTAAATTGTT+GGG | + | chr3.2:74625421-74625440 | MS.gene052218:intron | 10.0% |
| !!! | TAATGAATATTTTAAATTGT+TGG | + | chr3.2:74625420-74625439 | MS.gene052218:intron | 10.0% |
| !! | AACAAATTTGAATTACCAAT+TGG | - | chr3.2:74624906-74624925 | None:intergenic | 20.0% |
| !! | AACACAATATTAAATGATTG+TGG | - | chr3.2:74625033-74625052 | None:intergenic | 20.0% |
| !! | AACTTGTATATTAATTACCT+TGG | - | chr3.2:74625390-74625409 | None:intergenic | 20.0% |
| !! | CAAAGTAAAATAGAGTTATA+TGG | - | chr3.2:74625245-74625264 | None:intergenic | 20.0% |
| !! | TAATAGTTATTCAAATGCAA+TGG | + | chr3.2:74623739-74623758 | MS.gene052218:CDS | 20.0% |
| !! | TGCTTGTTTATAATGATAAA+GGG | - | chr3.2:74624332-74624351 | None:intergenic | 20.0% |
| !! | TTATGTTGTATGGAAATTTA+GGG | + | chr3.2:74623693-74623712 | MS.gene052218:CDS | 20.0% |
| !! | TTGAAGATATGATGATATAT+AGG | - | chr3.2:74624530-74624549 | None:intergenic | 20.0% |
| !!! | AATTTGCATTTTCAAAATAC+TGG | - | chr3.2:74623775-74623794 | None:intergenic | 20.0% |
| !!! | TAGTTTATGATTTTGAATTG+TGG | + | chr3.2:74624559-74624578 | MS.gene052218:intron | 20.0% |
| ! | AATGATCATCAAAAATCCAA+AGG | + | chr3.2:74623635-74623654 | MS.gene052218:CDS | 25.0% |
| ! | AATGCAAATTCAAATGCAAA+AGG | + | chr3.2:74623785-74623804 | MS.gene052218:CDS | 25.0% |
| ! | AATGTTTATGCATTGTGAAA+TGG | + | chr3.2:74625469-74625488 | MS.gene052218:intron | 25.0% |
| ! | ATGGAAATTTAGGGAATATT+AGG | + | chr3.2:74623702-74623721 | MS.gene052218:CDS | 25.0% |
| ! | CTGCTTGTTTATAATGATAA+AGG | - | chr3.2:74624333-74624352 | None:intergenic | 25.0% |
| ! | CTTGATATTGTAGTAAATTG+TGG | + | chr3.2:74624613-74624632 | MS.gene052218:intron | 25.0% |
| ! | CTTTATCATTATAAACAAGC+AGG | + | chr3.2:74624331-74624350 | MS.gene052218:CDS | 25.0% |
| ! | GATTAGGAAATTTACACTTT+AGG | + | chr3.2:74624146-74624165 | MS.gene052218:CDS | 25.0% |
| ! | GTTATGTTGTATGGAAATTT+AGG | + | chr3.2:74623692-74623711 | MS.gene052218:CDS | 25.0% |
| ! | TTATAAAAATGGAAGATTCG+CGG | + | chr3.2:74623958-74623977 | MS.gene052218:CDS | 25.0% |
| !! | ATTATTGCTGATTACAGATT+AGG | + | chr3.2:74624292-74624311 | MS.gene052218:intron | 25.0% |
| !!! | AGGGTAATAGTTTTAATTTG+CGG | - | chr3.2:74624686-74624705 | None:intergenic | 25.0% |
| !!! | ATTGTGAAATGGATTATAGA+TGG | + | chr3.2:74625480-74625499 | MS.gene052218:intron | 25.0% |
| AATTTAGGGAATATTAGGCA+AGG | + | chr3.2:74623707-74623726 | MS.gene052218:CDS | 30.0% | |
| AGGAAATTTACACTTTAGGT+AGG | + | chr3.2:74624150-74624169 | MS.gene052218:intron | 30.0% | |
| ATCATTAACGTTGTTTGGTA+TGG | - | chr3.2:74623363-74623382 | None:intergenic | 30.0% | |
| ATTTGATGAACAAGAAGACT+TGG | - | chr3.2:74623477-74623496 | None:intergenic | 30.0% | |
| CTATTTAATTCCTCATCTTC+TGG | - | chr3.2:74625556-74625575 | None:intergenic | 30.0% | |
| GGATTAATGACAACAGTATT+TGG | + | chr3.2:74623299-74623318 | MS.gene052218:CDS | 30.0% | |
| GGGAATGAGGATTATAAAAA+TGG | + | chr3.2:74623947-74623966 | MS.gene052218:CDS | 30.0% | |
| TAATGACAACAGTATTTGGA+AGG | + | chr3.2:74623303-74623322 | MS.gene052218:CDS | 30.0% | |
| TCAAATTCATCAACTACTCA+GGG | + | chr3.2:74623542-74623561 | MS.gene052218:CDS | 30.0% | |
| TCATTAACGTTGTTTGGTAT+GGG | - | chr3.2:74623362-74623381 | None:intergenic | 30.0% | |
| TGATTACAGATTAGGAGAAA+CGG | + | chr3.2:74624300-74624319 | MS.gene052218:intron | 30.0% | |
| TGGATTATAGATGGAAAGAT+GGG | + | chr3.2:74625489-74625508 | MS.gene052218:intron | 30.0% | |
| TTCAAATTCATCAACTACTC+AGG | + | chr3.2:74623541-74623560 | MS.gene052218:CDS | 30.0% | |
| TTTGGATCATTAACGTTGTT+TGG | - | chr3.2:74623368-74623387 | None:intergenic | 30.0% | |
| ! | ACTCTATTTTACTTTGCAAC+CGG | + | chr3.2:74625249-74625268 | MS.gene052218:CDS | 30.0% |
| ! | ATGGATTATAGATGGAAAGA+TGG | + | chr3.2:74625488-74625507 | MS.gene052218:intron | 30.0% |
| ! | GATGAATTTGAAACCTTTGA+TGG | - | chr3.2:74623533-74623552 | None:intergenic | 30.0% |
| ! | TTTTTCTACCTTCAACTTGT+TGG | - | chr3.2:74623861-74623880 | None:intergenic | 30.0% |
| !! | AATAAGAGTACTACTTCCTT+TGG | - | chr3.2:74623654-74623673 | None:intergenic | 30.0% |
| !! | ATTAAATAGAGCATTGTTGG+AGG | + | chr3.2:74625567-74625586 | MS.gene052218:CDS | 30.0% |
| !! | CTTCTATAAGAAGCTGTTTT+AGG | - | chr3.2:74624022-74624041 | None:intergenic | 30.0% |
| !! | GGAATTAAATAGAGCATTGT+TGG | + | chr3.2:74625564-74625583 | MS.gene052218:CDS | 30.0% |
| !! | GTGTTTGAAACATTTTGTGA+AGG | - | chr3.2:74623434-74623453 | None:intergenic | 30.0% |
| AAAGAAGCTGTTGGTATTTC+AGG | + | chr3.2:74623593-74623612 | MS.gene052218:CDS | 35.0% | |
| ACCAAATTCTTTGGACCAAT+TGG | + | chr3.2:74624888-74624907 | MS.gene052218:CDS | 35.0% | |
| ACCAATTGGTCCAAAGAATT+TGG | - | chr3.2:74624892-74624911 | None:intergenic | 35.0% | |
| ACGTGATAGAGAGATACATT+AGG | - | chr3.2:74624706-74624725 | None:intergenic | 35.0% | |
| AGCAAAATGTTACGTGTATC+TGG | - | chr3.2:74624227-74624246 | None:intergenic | 35.0% | |
| ATTGTGATTGCGATATATCG+TGG | + | chr3.2:74624641-74624660 | MS.gene052218:intron | 35.0% | |
| CAAATTCATCAACTACTCAG+GGG | + | chr3.2:74623543-74623562 | MS.gene052218:CDS | 35.0% | |
| CAATCGTCAACATCAAAATG+AGG | - | chr3.2:74624867-74624886 | None:intergenic | 35.0% | |
| CAGAGCAGTTGAAAATAATG+GGG | + | chr3.2:74623927-74623946 | MS.gene052218:CDS | 35.0% | |
| CCAGAGCAGTTGAAAATAAT+GGG | + | chr3.2:74623926-74623945 | MS.gene052218:CDS | 35.0% | |
| CGTGATAGAGAGATACATTA+GGG | - | chr3.2:74624705-74624724 | None:intergenic | 35.0% | |
| GACGATTGTACCAAATTCTT+TGG | + | chr3.2:74624879-74624898 | MS.gene052218:CDS | 35.0% | |
| GCAAATTCAAATGCAAAAGG+AGG | + | chr3.2:74623788-74623807 | MS.gene052218:CDS | 35.0% | |
| GCTTATATTTAAGAGCAGAG+CGG | + | chr3.2:74624244-74624263 | MS.gene052218:intron | 35.0% | |
| GGTACTCATCAGTTATTAAC+TGG | + | chr3.2:74624504-74624523 | MS.gene052218:intron | 35.0% | |
| TAACAACAAGATGGCAAACA+AGG | + | chr3.2:74625106-74625125 | MS.gene052218:CDS | 35.0% | |
| TAATAACTGATGAGTACCTG+TGG | - | chr3.2:74624502-74624521 | None:intergenic | 35.0% | |
| TAGGGCTATATCAACTAGAA+TGG | + | chr3.2:74623901-74623920 | MS.gene052218:CDS | 35.0% | |
| TCATTTAAGTAAGTGCACTG+AGG | + | chr3.2:74624402-74624421 | MS.gene052218:CDS | 35.0% | |
| TCCAGAGCAGTTGAAAATAA+TGG | + | chr3.2:74623925-74623944 | MS.gene052218:CDS | 35.0% | |
| TCGAAAAAAACATCCTCTGT+GGG | + | chr3.2:74623329-74623348 | MS.gene052218:CDS | 35.0% | |
| TCTGGCAATGTTATGTTGTA+TGG | + | chr3.2:74623683-74623702 | MS.gene052218:CDS | 35.0% | |
| TGAAGCTGTGTTTGAATGTA+GGG | + | chr3.2:74624081-74624100 | MS.gene052218:CDS | 35.0% | |
| TTATAAACAAGCAGGATCAG+AGG | + | chr3.2:74624339-74624358 | MS.gene052218:CDS | 35.0% | |
| TTGAAGCTGTGTTTGAATGT+AGG | + | chr3.2:74624080-74624099 | MS.gene052218:CDS | 35.0% | |
| TTGAAGGTAGAAAAATCACG+TGG | + | chr3.2:74623866-74623885 | MS.gene052218:CDS | 35.0% | |
| ! | CTCTATTTTACTTTGCAACC+GGG | + | chr3.2:74625250-74625269 | MS.gene052218:CDS | 35.0% |
| ! | GAAATACCAACAGCTTCTTT+TGG | - | chr3.2:74623593-74623612 | None:intergenic | 35.0% |
| ! | GTTGAAAATAATGGGGAATG+AGG | + | chr3.2:74623934-74623953 | MS.gene052218:CDS | 35.0% |
| ! | TGATGAGCTCTATGATAATG+AGG | - | chr3.2:74624124-74624143 | None:intergenic | 35.0% |
| !! | CAGATTTGATGATGCTTTAG+AGG | + | chr3.2:74625055-74625074 | MS.gene052218:intron | 35.0% |
| !! | TGTTTGCCATCTTGTTGTTA+GGG | - | chr3.2:74625106-74625125 | None:intergenic | 35.0% |
| !! | TTGTTTGCCATCTTGTTGTT+AGG | - | chr3.2:74625107-74625126 | None:intergenic | 35.0% |
| AAGAGCTGATTGTAATGCCA+AGG | + | chr3.2:74625370-74625389 | MS.gene052218:CDS | 40.0% | |
| AAGGTAGAAAAATCACGTGG+TGG | + | chr3.2:74623869-74623888 | MS.gene052218:CDS | 40.0% | |
| ACCTCCAAAACTCTATCATC+CGG | + | chr3.2:74624463-74624482 | MS.gene052218:CDS | 40.0% | |
| ACTAGACCCTAACAACAAGA+TGG | + | chr3.2:74625097-74625116 | MS.gene052218:CDS | 40.0% | |
| AGAGTTCCAAAAGAAGCTGT+TGG | + | chr3.2:74623584-74623603 | MS.gene052218:CDS | 40.0% | |
| AGCAGTTGAAGATTGTACTG+CGG | + | chr3.2:74625307-74625326 | MS.gene052218:CDS | 40.0% | |
| ATTTCGCCAGAGAGAAAATC+AGG | + | chr3.2:74623272-74623291 | MS.gene052218:CDS | 40.0% | |
| CAACTTAAGAAACAACGAGG+TGG | + | chr3.2:74625598-74625617 | MS.gene052218:CDS | 40.0% | |
| CAGATTAGGAGAAACGGATA+AGG | + | chr3.2:74624306-74624325 | MS.gene052218:intron | 40.0% | |
| CTTCAACTGCTTTCTCCAAT+TGG | - | chr3.2:74625298-74625317 | None:intergenic | 40.0% | |
| CTTGTGTTGCATATGGAGAA+GGG | + | chr3.2:74625207-74625226 | MS.gene052218:CDS | 40.0% | |
| GAAAGATGGGAAGCTTCAAT+AGG | + | chr3.2:74625502-74625521 | MS.gene052218:CDS | 40.0% | |
| GCAGCTTGTAGATCAAAACT+CGG | + | chr3.2:74625272-74625291 | MS.gene052218:CDS | 40.0% | |
| GTCGAAAAAAACATCCTCTG+TGG | + | chr3.2:74623328-74623347 | MS.gene052218:CDS | 40.0% | |
| TAAAAATGGAAGATTCGCGG+AGG | + | chr3.2:74623961-74623980 | MS.gene052218:CDS | 40.0% | |
| TAGATCAAAACTCGGCCAAT+TGG | + | chr3.2:74625280-74625299 | MS.gene052218:CDS | 40.0% | |
| TGACAACAGTATTTGGAAGG+CGG | + | chr3.2:74623306-74623325 | MS.gene052218:CDS | 40.0% | |
| TGCAATAGCTGCATCATACA+AGG | - | chr3.2:74623993-74624012 | None:intergenic | 40.0% | |
| TTCACTTTAGCAACCTCATC+AGG | - | chr3.2:74624370-74624389 | None:intergenic | 40.0% | |
| ! | AACCTTGCTTTGGTGTAAGA+TGG | - | chr3.2:74625347-74625366 | None:intergenic | 40.0% |
| ! | AAGAGGAAACGAGCTTTTCA+AGG | + | chr3.2:74625166-74625185 | MS.gene052218:CDS | 40.0% |
| ! | ACCTTGCTTTGGTGTAAGAT+GGG | - | chr3.2:74625346-74625365 | None:intergenic | 40.0% |
| ! | ACTCAGGGGTATGTTAATCA+AGG | + | chr3.2:74623557-74623576 | MS.gene052218:CDS | 40.0% |
| ! | AGGGGTATGTTAATCAAGGT+AGG | + | chr3.2:74623561-74623580 | MS.gene052218:CDS | 40.0% |
| ! | ATCATCCACCAACAAGTTGA+AGG | + | chr3.2:74623850-74623869 | MS.gene052218:CDS | 40.0% |
| ! | CATAGAGCTCATCATCGATT+AGG | + | chr3.2:74624130-74624149 | MS.gene052218:CDS | 40.0% |
| ! | CCCATTATTTTCAACTGCTC+TGG | - | chr3.2:74623929-74623948 | None:intergenic | 40.0% |
| ! | TGTGCTGATATATGTGACAC+TGG | + | chr3.2:74624755-74624774 | MS.gene052218:intron | 40.0% |
| !! | TTCTACCTTCAACTTGTTGG+TGG | - | chr3.2:74623858-74623877 | None:intergenic | 40.0% |
| !!! | TGATAGAGTTTTGGAGGTCT+CGG | - | chr3.2:74624461-74624480 | None:intergenic | 40.0% |
| AAGAGAGACACCAGAAGATG+AGG | + | chr3.2:74625543-74625562 | MS.gene052218:CDS | 45.0% | |
| AATGATCCAAAACGACGACG+TGG | + | chr3.2:74623377-74623396 | MS.gene052218:CDS | 45.0% | |
| ACGTGGTGGTTCACTTTGTA+GGG | + | chr3.2:74623883-74623902 | MS.gene052218:CDS | 45.0% | |
| AGCTCTTCTCAACCTTGCTT+TGG | - | chr3.2:74625357-74625376 | None:intergenic | 45.0% | |
| CTGCTTTAACTGCTCTTGGT+AGG | + | chr3.2:74624053-74624072 | MS.gene052218:CDS | 45.0% | |
| GCGCAACTTAAGAAACAACG+AGG | + | chr3.2:74625595-74625614 | MS.gene052218:CDS | 45.0% | |
| GCTTGTGTTGCATATGGAGA+AGG | + | chr3.2:74625206-74625225 | MS.gene052218:CDS | 45.0% | |
| GTGGCCACAAAAACAATTGC+AGG | + | chr3.2:74624660-74624679 | MS.gene052218:intron | 45.0% | |
| TCCATATGCAACACAAGCCT+CGG | - | chr3.2:74625204-74625223 | None:intergenic | 45.0% | |
| TGTCTGCATCTTGATGCCTA+CGG | - | chr3.2:74624827-74624846 | None:intergenic | 45.0% | |
| ! | TGCACCGGATGATAGAGTTT+TGG | - | chr3.2:74624470-74624489 | None:intergenic | 45.0% |
| !! | AAGCGCTGATAAAACTCCGT+AGG | + | chr3.2:74624808-74624827 | MS.gene052218:CDS | 45.0% |
| !! | AAGTTGATATAGCTGCTGGC+AGG | + | chr3.2:74624940-74624959 | MS.gene052218:CDS | 45.0% |
| !! | ACCGGATGATAGAGTTTTGG+AGG | - | chr3.2:74624467-74624486 | None:intergenic | 45.0% |
| !! | ACGGAGTTTTATCAGCGCTT+CGG | - | chr3.2:74624808-74624827 | None:intergenic | 45.0% |
| !! | AGTGCTGCTTTAACTGCTCT+TGG | + | chr3.2:74624049-74624068 | MS.gene052218:CDS | 45.0% |
| !! | ATAGAGCATTGTTGGAGGCT+CGG | + | chr3.2:74625572-74625591 | MS.gene052218:CDS | 45.0% |
| !! | GCTCAAGTTGATATAGCTGC+TGG | + | chr3.2:74624936-74624955 | MS.gene052218:CDS | 45.0% |
| !! | GGCAAACAAGGTGTTGAGAA+AGG | + | chr3.2:74625118-74625137 | MS.gene052218:CDS | 45.0% |
| !! | GTTTTGATCTACAAGCTGCC+CGG | - | chr3.2:74625271-74625290 | None:intergenic | 45.0% |
| ACGACGTGGTGGTTCAAAAG+AGG | + | chr3.2:74623391-74623410 | MS.gene052218:CDS | 50.0% | |
| ACTCTTATTCGCGCTTCGTC+TGG | + | chr3.2:74623665-74623684 | MS.gene052218:CDS | 50.0% | |
| ATCAGAGGCTGATCCTGATG+AGG | + | chr3.2:74624354-74624373 | MS.gene052218:CDS | 50.0% | |
| CACGTGGTGGTTCACTTTGT+AGG | + | chr3.2:74623882-74623901 | MS.gene052218:CDS | 50.0% | |
| CCAGAGAGAAAATCAGGCTG+TGG | + | chr3.2:74623278-74623297 | MS.gene052218:CDS | 50.0% | |
| CTATCATCCGGTGCAGATTC+TGG | + | chr3.2:74624475-74624494 | MS.gene052218:CDS | 50.0% | |
| GCCCATCTTACACCAAAGCA+AGG | + | chr3.2:74625342-74625361 | MS.gene052218:CDS | 50.0% | |
| TCCGAGGCTTGTGTTGCATA+TGG | + | chr3.2:74625200-74625219 | MS.gene052218:CDS | 50.0% | |
| ! | CCACAGCCTGATTTTCTCTC+TGG | - | chr3.2:74623281-74623300 | None:intergenic | 50.0% |
| ! | GAAACCTTTGATGGTCCACG+TGG | - | chr3.2:74623524-74623543 | None:intergenic | 50.0% |
| !! | CAAGGCATCGAAATTCTCCG+AGG | + | chr3.2:74625184-74625203 | MS.gene052218:CDS | 50.0% |
| !! | TAGAGCATTGTTGGAGGCTC+GGG | + | chr3.2:74625573-74625592 | MS.gene052218:CDS | 50.0% |
| !!! | GCGGCCTGCAATTGTTTTTG+TGG | - | chr3.2:74624667-74624686 | None:intergenic | 50.0% |
| AACGCCACGTGGACCATCAA+AGG | + | chr3.2:74623517-74623536 | MS.gene052218:CDS | 55.0% | |
| AGGCTCGCAGGTTAGGAGAT+TGG | + | chr3.2:74624422-74624441 | MS.gene052218:CDS | 55.0% | |
| CAGAAAACGACAACGCCACG+TGG | + | chr3.2:74623506-74623525 | MS.gene052218:CDS | 55.0% | |
| CTGTGGACCAGAATCTGCAC+CGG | - | chr3.2:74624485-74624504 | None:intergenic | 55.0% | |
| GATCCAAAACGACGACGTGG+TGG | + | chr3.2:74623380-74623399 | MS.gene052218:CDS | 55.0% | |
| GTGACAGCTGCAAGAGGAAG+AGG | + | chr3.2:74625149-74625168 | MS.gene052218:CDS | 55.0% | |
| TATGGGAGCAGAACCCACAG+AGG | - | chr3.2:74623345-74623364 | None:intergenic | 55.0% | |
| ! | GAACCACCACGTCGTCGTTT+TGG | - | chr3.2:74623386-74623405 | None:intergenic | 55.0% |
| !!! | CGTGGCGTTGTCGTTTTCTG+TGG | - | chr3.2:74623506-74623525 | None:intergenic | 55.0% |
| CGAGCTGTGACAGCTGCAAG+AGG | + | chr3.2:74625143-74625162 | MS.gene052218:CDS | 60.0% | |
| CGGTGCAGATTCTGGTCCAC+AGG | + | chr3.2:74624483-74624502 | MS.gene052218:CDS | 60.0% | |
| GTAAGTGCACTGAGGCTCGC+AGG | + | chr3.2:74624410-74624429 | MS.gene052218:CDS | 60.0% | |
| TGCACTGAGGCTCGCAGGTT+AGG | + | chr3.2:74624415-74624434 | MS.gene052218:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 74623263 | 74625624 | 74623263 | ID=MS.gene052218 |
| chr3.2 | mRNA | 74623263 | 74625624 | 74623263 | ID=MS.gene052218.t1;Parent=MS.gene052218 |
| chr3.2 | exon | 74623263 | 74624167 | 74623263 | ID=MS.gene052218.t1.exon1;Parent=MS.gene052218.t1 |
| chr3.2 | CDS | 74623263 | 74624167 | 74623263 | ID=cds.MS.gene052218.t1;Parent=MS.gene052218.t1 |
| chr3.2 | exon | 74624309 | 74624504 | 74624309 | ID=MS.gene052218.t1.exon2;Parent=MS.gene052218.t1 |
| chr3.2 | CDS | 74624309 | 74624504 | 74624309 | ID=cds.MS.gene052218.t1;Parent=MS.gene052218.t1 |
| chr3.2 | exon | 74624789 | 74624961 | 74624789 | ID=MS.gene052218.t1.exon3;Parent=MS.gene052218.t1 |
| chr3.2 | CDS | 74624789 | 74624961 | 74624789 | ID=cds.MS.gene052218.t1;Parent=MS.gene052218.t1 |
| chr3.2 | exon | 74625058 | 74625391 | 74625058 | ID=MS.gene052218.t1.exon4;Parent=MS.gene052218.t1 |
| chr3.2 | CDS | 74625058 | 74625391 | 74625058 | ID=cds.MS.gene052218.t1;Parent=MS.gene052218.t1 |
| chr3.2 | exon | 74625499 | 74625624 | 74625499 | ID=MS.gene052218.t1.exon5;Parent=MS.gene052218.t1 |
| chr3.2 | CDS | 74625499 | 74625624 | 74625499 | ID=cds.MS.gene052218.t1;Parent=MS.gene052218.t1 |
| Gene Sequence |
| Protein sequence |
