Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052303.t1 | XP_003607298.1 | 98.2 | 400 | 7 | 0 | 1 | 400 | 114 | 513 | 1.20E-226 | 795.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052303.t1 | Q84P54 | 85.5 | 399 | 58 | 0 | 1 | 399 | 117 | 515 | 1.1e-204 | 713.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052303.t1 | G7JPM8 | 98.2 | 400 | 7 | 0 | 1 | 400 | 114 | 513 | 8.6e-227 | 795.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052303 | MS.gene052375 | 0.96271 | 3.34E-121 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 94 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATAGCAGCCAGTCTTTC+TGG | 0.124930 | 4.2:+33055234 | MS.gene052303:CDS |
| TCCCAGTTAATCAGCATTTA+TGG | 0.145879 | 4.2:+33058581 | MS.gene052303:intron |
| TCTCATGGATTCACTTATTC+TGG | 0.186671 | 4.2:+33057122 | MS.gene052303:CDS |
| TGTATTACTTCTGTAATTTC+AGG | 0.202525 | 4.2:-33056994 | None:intergenic |
| ACAGGAGTAGGTGCCTATTT+TGG | 0.230656 | 4.2:+33057905 | MS.gene052303:intron |
| GCAATGAACTTCTTCTTATC+TGG | 0.255044 | 4.2:-33055096 | None:intergenic |
| TTTAAGGTAATCTGTGCCTT+TGG | 0.270948 | 4.2:+33056771 | MS.gene052303:intron |
| TCTTCAGGTGATATAATAAA+TGG | 0.277964 | 4.2:-33057992 | None:intergenic |
| ATCTGTGCCTTTGGGAGGCT+TGG | 0.291200 | 4.2:+33056780 | MS.gene052303:CDS |
| AACCAGATTGGCCAACAATT+TGG | 0.294911 | 4.2:+33055559 | MS.gene052303:CDS |
| TTCCAAATTGTTGGCCAATC+TGG | 0.300092 | 4.2:-33055561 | None:intergenic |
| GTACCTCATCTGCAATAAAA+AGG | 0.304414 | 4.2:-33056658 | None:intergenic |
| GGGATGCTAGTTCGTGTAGC+TGG | 0.304929 | 4.2:+33057947 | MS.gene052303:CDS |
| GTCTTGAACTTGCCCCATTC+AGG | 0.307348 | 4.2:-33057531 | None:intergenic |
| GGGAGGCTTGGGTATATGTT+TGG | 0.316191 | 4.2:+33056792 | MS.gene052303:CDS |
| CTCGCACTGTGCTCCAAAAT+AGG | 0.327909 | 4.2:-33057918 | None:intergenic |
| CAATGTGTATTTCAGTCTTC+CGG | 0.336195 | 4.2:+33055348 | MS.gene052303:intron |
| GTTACCTCGTCAACTTCTTC+AGG | 0.342007 | 4.2:-33058007 | None:intergenic |
| TTAAGGTAATCTGTGCCTTT+GGG | 0.344043 | 4.2:+33056772 | MS.gene052303:intron |
| CCCAGTTAATCAGCATTTAT+GGG | 0.347963 | 4.2:+33058582 | MS.gene052303:intron |
| AATTAACTCTTCCAAATTGT+TGG | 0.354247 | 4.2:-33055570 | None:intergenic |
| TTCCAGAAGGAATGGTAAAA+TGG | 0.373744 | 4.2:-33052869 | None:intergenic |
| TACTGGCGGTATCATCTTCC+AGG | 0.388542 | 4.2:+33055430 | MS.gene052303:CDS |
| TCTGTGCCTTTGGGAGGCTT+GGG | 0.404250 | 4.2:+33056781 | MS.gene052303:CDS |
| TTGCCCCATTCAGGAGGAAA+TGG | 0.407607 | 4.2:-33057522 | None:intergenic |
| TCATATATTATTACTGTCTC+TGG | 0.412014 | 4.2:-33055605 | None:intergenic |
| TCTCACAGGTAAAACTTGTA+TGG | 0.415396 | 4.2:+33055049 | MS.gene052303:intron |
| TGATAGCAGCCAGTCTTTCT+GGG | 0.417102 | 4.2:+33055235 | MS.gene052303:CDS |
| CGGGGAACTGGCTTGATCCT+AGG | 0.418211 | 4.2:+33057465 | MS.gene052303:CDS |
| TAAGCCAGACCTTGTTTCCT+TGG | 0.418554 | 4.2:+33056833 | MS.gene052303:CDS |
| TTCAGGAGGAAATGGATCAT+TGG | 0.423173 | 4.2:-33057514 | None:intergenic |
| CAAACACACCTGAGTGTCAT+TGG | 0.426387 | 4.2:-33054669 | None:intergenic |
| TGATCCATTTCCTCCTGAAT+GGG | 0.429861 | 4.2:+33057518 | MS.gene052303:CDS |
| ACCTTGTCAAAATAAGTTGC+TGG | 0.432621 | 4.2:-33055750 | None:intergenic |
| TCTTCTGCATACATGCCAAT+TGG | 0.433415 | 4.2:+33056955 | MS.gene052303:CDS |
| ATGATCCATTTCCTCCTGAA+TGG | 0.444466 | 4.2:+33057517 | MS.gene052303:CDS |
| TCAGGAGGAAATGGATCATT+GGG | 0.451426 | 4.2:-33057513 | None:intergenic |
| AATAGATACCTCTCCAATGA+TGG | 0.452306 | 4.2:-33057369 | None:intergenic |
| GATCTGCAGATACGGGGAAC+TGG | 0.453573 | 4.2:+33057453 | MS.gene052303:intron |
| GTATTACTTCTGTAATTTCA+GGG | 0.454107 | 4.2:-33056993 | None:intergenic |
| GGATGCTAGTTCGTGTAGCT+GGG | 0.454385 | 4.2:+33057948 | MS.gene052303:CDS |
| ATACTGATTGTCCACACTAC+TGG | 0.473074 | 4.2:+33055413 | MS.gene052303:CDS |
| GGAAGAGTTAATTCTGAAAG+AGG | 0.481297 | 4.2:+33055580 | MS.gene052303:CDS |
| CATTCACAAAGCAACAAACT+TGG | 0.487889 | 4.2:+33057015 | MS.gene052303:CDS |
| AAGTGCAACAACACAGGGTA+CGG | 0.490613 | 4.2:-33057150 | None:intergenic |
| GGGGAACTGGCTTGATCCTA+GGG | 0.502543 | 4.2:+33057466 | MS.gene052303:CDS |
| TTTATGCCATCTTGGAACTT+CGG | 0.504379 | 4.2:-33057329 | None:intergenic |
| TTTGCGGTACCCAGAAAGAC+TGG | 0.520649 | 4.2:-33055244 | None:intergenic |
| CTCACAAGGATAGCTCCAAT+TGG | 0.520930 | 4.2:-33056970 | None:intergenic |
| GGAAGAGTTCGCAACCAGAT+TGG | 0.521350 | 4.2:+33055547 | MS.gene052303:CDS |
| TGGGAAAGCTTTAAGAGAGA+CGG | 0.523625 | 4.2:+33058601 | MS.gene052303:CDS |
| ATTGATATGAATACCAATGC+AGG | 0.524294 | 4.2:-33052905 | None:intergenic |
| TTTGCCAAGGAAACAAGGTC+TGG | 0.524651 | 4.2:-33056837 | None:intergenic |
| AGACCTTGTTTCCTTGGCAA+AGG | 0.527840 | 4.2:+33056839 | MS.gene052303:CDS |
| AGGTAATCTGTGCCTTTGGG+AGG | 0.528664 | 4.2:+33056775 | MS.gene052303:intron |
| GGAGCACAGTGCGAGAAGCA+TGG | 0.538109 | 4.2:+33057926 | MS.gene052303:CDS |
| CATACTTCTTGACAACAGCT+TGG | 0.542626 | 4.2:-33056631 | None:intergenic |
| CAATCAGTATGCAAAACAAA+AGG | 0.542934 | 4.2:-33055400 | None:intergenic |
| TTTATTGCAGAACCAGTGAT+GGG | 0.545176 | 4.2:+33055705 | MS.gene052303:CDS |
| TCGAACCACAAGACCTGCAT+TGG | 0.546381 | 4.2:+33052892 | MS.gene052303:CDS |
| ATTTATTGCAGAACCAGTGA+TGG | 0.548236 | 4.2:+33055704 | MS.gene052303:CDS |
| TGGTATTATTACAATGCACT+TGG | 0.555773 | 4.2:+33055069 | MS.gene052303:CDS |
| CTGTAATTTCAGGGCTCACA+AGG | 0.557072 | 4.2:-33056984 | None:intergenic |
| TGCTTCAAGTGCAACAACAC+AGG | 0.558426 | 4.2:-33057156 | None:intergenic |
| CTTTATACAGGATCTAGCCA+AGG | 0.559075 | 4.2:+33054580 | MS.gene052303:intron |
| TTACCTTTGCCAAGGAAACA+AGG | 0.559829 | 4.2:-33056842 | None:intergenic |
| GAGCACAGTGCGAGAAGCAT+GGG | 0.562714 | 4.2:+33057927 | MS.gene052303:CDS |
| GTATGCAAAACAAAAGGAGC+TGG | 0.565734 | 4.2:-33055394 | None:intergenic |
| GAAGAGTTAATTCTGAAAGA+GGG | 0.568386 | 4.2:+33055581 | MS.gene052303:CDS |
| GAATACCAATGCAGGTCTTG+TGG | 0.572741 | 4.2:-33052897 | None:intergenic |
| ATAGATACCTCTCCAATGAT+GGG | 0.577644 | 4.2:-33057368 | None:intergenic |
| CTCAGAAGCCAATGACACTC+AGG | 0.584605 | 4.2:+33054661 | MS.gene052303:CDS |
| TGGTTCGATTCCAGAAGGAA+TGG | 0.584996 | 4.2:-33052877 | None:intergenic |
| AGATGATACCGCCAGTAGTG+TGG | 0.586255 | 4.2:-33055424 | None:intergenic |
| TGTCTACAAACTCAGTCCCT+AGG | 0.595215 | 4.2:-33057482 | None:intergenic |
| AGTGCAACAACACAGGGTAC+GGG | 0.597320 | 4.2:-33057149 | None:intergenic |
| TTGTCAAAATAAGTTGCTGG+TGG | 0.601202 | 4.2:-33055747 | None:intergenic |
| CAACTTCTTTAATTGTGCAG+TGG | 0.610390 | 4.2:-33052846 | None:intergenic |
| TTGAACTTGCCCCATTCAGG+AGG | 0.615753 | 4.2:-33057528 | None:intergenic |
| TCAGGTGATATAATAAATGG+TGG | 0.616932 | 4.2:-33057989 | None:intergenic |
| TATTGCAGAACCAGTGATGG+GGG | 0.617202 | 4.2:+33055707 | MS.gene052303:CDS |
| GCTTCAAGTGCAACAACACA+GGG | 0.623004 | 4.2:-33057155 | None:intergenic |
| TGACAGTCCCATCATTGGAG+AGG | 0.625972 | 4.2:+33057361 | MS.gene052303:CDS |
| TCTTGTGGTTCGATTCCAGA+AGG | 0.628395 | 4.2:-33052882 | None:intergenic |
| GATCCATTTCCTCCTGAATG+GGG | 0.634698 | 4.2:+33057519 | MS.gene052303:CDS |
| GTGCAGTGGCAGCATCAACA+AGG | 0.638632 | 4.2:-33052832 | None:intergenic |
| TTATTGCAGAACCAGTGATG+GGG | 0.639725 | 4.2:+33055706 | MS.gene052303:CDS |
| CATATACCCAAGCCTCCCAA+AGG | 0.651716 | 4.2:-33056787 | None:intergenic |
| CTGATTGTCCACACTACTGG+CGG | 0.654598 | 4.2:+33055416 | MS.gene052303:CDS |
| ATAGCTCCGAAGTTCCAAGA+TGG | 0.664003 | 4.2:+33057323 | MS.gene052303:CDS |
| TGACATCTCAGGTGAGACAG+AGG | 0.667832 | 4.2:+33055526 | MS.gene052303:intron |
| CTTCTCGATCTGCAGATACG+GGG | 0.679915 | 4.2:+33057447 | MS.gene052303:intron |
| GATGCTAGTTCGTGTAGCTG+GGG | 0.681332 | 4.2:+33057949 | MS.gene052303:CDS |
| ATCACCTGAAGAAGTTGACG+AGG | 0.716638 | 4.2:+33058003 | MS.gene052303:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATATATTTCTTTATAC+AGG | + | chr4.2:33054568-33054587 | MS.gene052303:intron | 10.0% |
| !! | TATAATCTCATATAATAAAT+TGG | - | chr4.2:33053733-33053752 | None:intergenic | 10.0% |
| !! | AAATTCTTTATTCAATTATC+TGG | + | chr4.2:33055324-33055343 | MS.gene052303:intron | 15.0% |
| !! | AACTTCAAAAAATTATGAAA+AGG | - | chr4.2:33056895-33056914 | None:intergenic | 15.0% |
| !! | AAGAAGGATTTAAATTTAAA+CGG | + | chr4.2:33053460-33053479 | MS.gene052303:intron | 15.0% |
| !! | ATTAAATTATTGAATATGAG+CGG | + | chr4.2:33058092-33058111 | MS.gene052303:intron | 15.0% |
| !! | TAAATGCTATAAGAAAAAAA+TGG | - | chr4.2:33056597-33056616 | None:intergenic | 15.0% |
| !! | TAATCATAAAAAGAATAATC+CGG | - | chr4.2:33056442-33056461 | None:intergenic | 15.0% |
| !!! | ATAAATACTTTTTATTTGAG+TGG | + | chr4.2:33058242-33058261 | MS.gene052303:intron | 15.0% |
| !!! | TATTTTAGATATCTATCTTA+AGG | + | chr4.2:33055482-33055501 | MS.gene052303:intron | 15.0% |
| !!! | TCTCTTTGTATTTTTTTTTA+AGG | + | chr4.2:33056755-33056774 | MS.gene052303:intron | 15.0% |
| !!! | TTTTCATAATTTTTTGAAGT+TGG | + | chr4.2:33056894-33056913 | MS.gene052303:intron | 15.0% |
| !!! | TTTTTAATAGTACTAATGAA+TGG | + | chr4.2:33053385-33053404 | MS.gene052303:intron | 15.0% |
| !! | AAGTAATTGGAAGAAAAAAT+TGG | + | chr4.2:33058290-33058309 | MS.gene052303:intron | 20.0% |
| !! | AATAAAGTAGGATGAATATA+TGG | + | chr4.2:33056509-33056528 | MS.gene052303:intron | 20.0% |
| !! | AATTGTACATACAAAGTAAT+TGG | + | chr4.2:33058277-33058296 | MS.gene052303:intron | 20.0% |
| !! | ACTAACTAGTCAATTAATTT+GGG | - | chr4.2:33058401-33058420 | None:intergenic | 20.0% |
| !! | ACTATTAACAAAAAAAGCTT+TGG | - | chr4.2:33054639-33054658 | None:intergenic | 20.0% |
| !! | ACTATTATTCATATGATGTA+GGG | - | chr4.2:33053412-33053431 | None:intergenic | 20.0% |
| !! | ATTATATAAGATATCCTGTT+TGG | + | chr4.2:33056702-33056721 | MS.gene052303:intron | 20.0% |
| !! | CCATGTTGTAAAAATTAAAT+GGG | - | chr4.2:33057579-33057598 | None:intergenic | 20.0% |
| !! | TACTAACTAGTCAATTAATT+TGG | - | chr4.2:33058402-33058421 | None:intergenic | 20.0% |
| !! | TCTAATTTATCAAACCAAAT+AGG | + | chr4.2:33055972-33055991 | MS.gene052303:intron | 20.0% |
| !! | TGGAATAAATTGAATAAAGT+AGG | + | chr4.2:33056497-33056516 | MS.gene052303:intron | 20.0% |
| !! | TTTAAGTAATTTAACTGTGA+AGG | + | chr4.2:33053779-33053798 | MS.gene052303:intron | 20.0% |
| !!! | AAAGCTTTTTTTGTTAATAG+TGG | + | chr4.2:33054638-33054657 | MS.gene052303:CDS | 20.0% |
| !!! | AACACTTAAAAACATCTTTT+AGG | - | chr4.2:33055999-33056018 | None:intergenic | 20.0% |
| !!! | AATTTTACCTTTTTAATTGC+GGG | + | chr4.2:33054380-33054399 | MS.gene052303:intron | 20.0% |
| !!! | ACACTTAAAAACATCTTTTA+GGG | - | chr4.2:33055998-33056017 | None:intergenic | 20.0% |
| !!! | AGTGTAATTTTTCAATTAGA+TGG | + | chr4.2:33054200-33054219 | MS.gene052303:intron | 20.0% |
| !!! | GAATTTTACCTTTTTAATTG+CGG | + | chr4.2:33054379-33054398 | MS.gene052303:intron | 20.0% |
| !!! | TATTTTTAGAAGACCAAATT+CGG | - | chr4.2:33054922-33054941 | None:intergenic | 20.0% |
| !!! | TCATATATATTTTTTCTCAC+AGG | + | chr4.2:33055035-33055054 | MS.gene052303:intron | 20.0% |
| !!! | TTTTAGACATGATTTACTAT+AGG | + | chr4.2:33053488-33053507 | MS.gene052303:intron | 20.0% |
| !!! | TTTTGTAAGAAACTGAAAAA+TGG | - | chr4.2:33055865-33055884 | None:intergenic | 20.0% |
| ! | AAAACGTCTTTCTTTGAATA+AGG | + | chr4.2:33053290-33053309 | MS.gene052303:intron | 25.0% |
| ! | AAACTTGTGTTTATGTAGAA+CGG | + | chr4.2:33055284-33055303 | MS.gene052303:intron | 25.0% |
| ! | AAATAAATGTAACCCATGTA+AGG | + | chr4.2:33054937-33054956 | MS.gene052303:intron | 25.0% |
| ! | AAATACTAAACCTAAAGATG+AGG | - | chr4.2:33057070-33057089 | None:intergenic | 25.0% |
| ! | AATAAATGTAACCCATGTAA+GGG | + | chr4.2:33054938-33054957 | MS.gene052303:intron | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | - | chr4.2:33056152-33056171 | None:intergenic | 25.0% |
| ! | AATAGTCCAGTAATTAAACT+TGG | + | chr4.2:33053426-33053445 | MS.gene052303:intron | 25.0% |
| ! | AATATATTCTCAACCGAATT+TGG | + | chr4.2:33054906-33054925 | MS.gene052303:intron | 25.0% |
| ! | AATATCTAGGCAAAACATAT+TGG | + | chr4.2:33053090-33053109 | MS.gene052303:intron | 25.0% |
| ! | AATGTTCCTAAATTGATTGT+AGG | + | chr4.2:33054029-33054048 | MS.gene052303:intron | 25.0% |
| ! | AATTAACTCTTCCAAATTGT+TGG | - | chr4.2:33055573-33055592 | None:intergenic | 25.0% |
| ! | AATTTGAATCTTTCAGAATG+TGG | + | chr4.2:33053666-33053685 | MS.gene052303:intron | 25.0% |
| ! | ACAGTTGAATGAAAATGTAT+TGG | - | chr4.2:33054734-33054753 | None:intergenic | 25.0% |
| ! | AGAGATGAAAAATTACTAGA+AGG | + | chr4.2:33056054-33056073 | MS.gene052303:intron | 25.0% |
| ! | AGAGTTAAGAATGAATTCAT+TGG | + | chr4.2:33053063-33053082 | MS.gene052303:intron | 25.0% |
| ! | ATATATACGTGAGTAATACT+TGG | - | chr4.2:33056364-33056383 | None:intergenic | 25.0% |
| ! | ATCCTTGAAAACTGAAAATA+AGG | - | chr4.2:33055904-33055923 | None:intergenic | 25.0% |
| ! | ATGAGACAGTAAAAAATAAG+AGG | - | chr4.2:33054704-33054723 | None:intergenic | 25.0% |
| ! | ATGCTATAAGAAAAAAATGG+AGG | - | chr4.2:33056594-33056613 | None:intergenic | 25.0% |
| ! | ATTTCTCTTTAGGTCTATAA+TGG | + | chr4.2:33057755-33057774 | MS.gene052303:intron | 25.0% |
| ! | CGATAGATATATTTCTCTTT+AGG | + | chr4.2:33057745-33057764 | MS.gene052303:intron | 25.0% |
| ! | CTTTCTTCAATTTAATGAAG+TGG | - | chr4.2:33058057-33058076 | None:intergenic | 25.0% |
| ! | GACTATTATTCATATGATGT+AGG | - | chr4.2:33053413-33053432 | None:intergenic | 25.0% |
| ! | GCCATGTTGTAAAAATTAAA+TGG | - | chr4.2:33057580-33057599 | None:intergenic | 25.0% |
| ! | GTATTACTTCTGTAATTTCA+GGG | - | chr4.2:33056996-33057015 | None:intergenic | 25.0% |
| ! | TAATAGTATTTGAAGAGCTA+AGG | - | chr4.2:33056686-33056705 | None:intergenic | 25.0% |
| ! | TAGTGTGAACAATATATGAA+AGG | - | chr4.2:33054115-33054134 | None:intergenic | 25.0% |
| ! | TATATACGTGAGTAATACTT+GGG | - | chr4.2:33056363-33056382 | None:intergenic | 25.0% |
| ! | TCATATATTATTACTGTCTC+TGG | - | chr4.2:33055608-33055627 | None:intergenic | 25.0% |
| ! | TCCTTTGATAAATACACATT+CGG | + | chr4.2:33057666-33057685 | MS.gene052303:intron | 25.0% |
| ! | TCTTCAGGTGATATAATAAA+TGG | - | chr4.2:33057995-33058014 | None:intergenic | 25.0% |
| ! | TGAAAAAACTTATTAACAGG+TGG | + | chr4.2:33056477-33056496 | MS.gene052303:intron | 25.0% |
| ! | TGTAAAAATTAAATGGGCAA+AGG | - | chr4.2:33057573-33057592 | None:intergenic | 25.0% |
| ! | TGTATTACTTCTGTAATTTC+AGG | - | chr4.2:33056997-33057016 | None:intergenic | 25.0% |
| ! | TGTCAATCTAAATAATAACC+TGG | - | chr4.2:33055451-33055470 | None:intergenic | 25.0% |
| ! | TTAACACCTACAATCAATTT+AGG | - | chr4.2:33054038-33054057 | None:intergenic | 25.0% |
| ! | TTACTCACGTATATATAAAC+AGG | + | chr4.2:33056368-33056387 | MS.gene052303:intron | 25.0% |
| ! | TTATAGATCCTAAACTAGAA+AGG | - | chr4.2:33057724-33057743 | None:intergenic | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr4.2:33056164-33056183 | MS.gene052303:intron | 25.0% |
| ! | TTTAACAGTTAGATGATGTT+AGG | + | chr4.2:33056282-33056301 | MS.gene052303:intron | 25.0% |
| !! | AATGATGGTCAATGATATTT+TGG | + | chr4.2:33054409-33054428 | MS.gene052303:intron | 25.0% |
| !! | ATACATTTTCATTCAACTGT+AGG | + | chr4.2:33054734-33054753 | MS.gene052303:intron | 25.0% |
| !! | CTCTGAAAAAACTTATTAAC+AGG | + | chr4.2:33056474-33056493 | MS.gene052303:intron | 25.0% |
| !! | GATACTGCAGATTTTAAATT+TGG | + | chr4.2:33058525-33058544 | MS.gene052303:intron | 25.0% |
| !! | GTTGCAAAATTTTCAAATGA+AGG | + | chr4.2:33058208-33058227 | MS.gene052303:intron | 25.0% |
| !! | TAATTGACTAGTTAGTATGA+TGG | + | chr4.2:33058405-33058424 | MS.gene052303:intron | 25.0% |
| !! | TCAGTTTTCAAAATGGAAAA+TGG | - | chr4.2:33056553-33056572 | None:intergenic | 25.0% |
| !! | TCTAGTAATTTTTCATCTCT+AGG | - | chr4.2:33056054-33056073 | None:intergenic | 25.0% |
| !! | TTAGGTTCGAAAATTTTCAA+GGG | - | chr4.2:33053567-33053586 | None:intergenic | 25.0% |
| !! | TTTTGTCCAAGTTTAATTAC+TGG | - | chr4.2:33053435-33053454 | None:intergenic | 25.0% |
| !!! | AATTGATTTTTTGCAGTGAA+AGG | - | chr4.2:33054481-33054500 | None:intergenic | 25.0% |
| !!! | ATGTATTTCTACATTTTGTC+AGG | + | chr4.2:33055196-33055215 | MS.gene052303:intron | 25.0% |
| !!! | ATTTTACCTTTTTAATTGCG+GGG | + | chr4.2:33054381-33054400 | MS.gene052303:intron | 25.0% |
| !!! | CCCATTTAATTTTTACAACA+TGG | + | chr4.2:33057576-33057595 | MS.gene052303:intron | 25.0% |
| !!! | CTCTGAAATTTTTAATGACA+CGG | - | chr4.2:33054071-33054090 | None:intergenic | 25.0% |
| !!! | TCTGAAATTTTTAATGACAC+GGG | - | chr4.2:33054070-33054089 | None:intergenic | 25.0% |
| !!! | TGTCTTACTCTTATTTTTTG+TGG | + | chr4.2:33057788-33057807 | MS.gene052303:intron | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr4.2:33056151-33056170 | MS.gene052303:intron | 25.0% |
| !!! | TTTAGGTTCGAAAATTTTCA+AGG | - | chr4.2:33053568-33053587 | None:intergenic | 25.0% |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr4.2:33056177-33056196 | MS.gene052303:intron | 30.0% | |
| AACACTATGATGTACATTAC+AGG | + | chr4.2:33057887-33057906 | MS.gene052303:intron | 30.0% | |
| AAGCAACAAACTTGGTATAA+CGG | + | chr4.2:33057023-33057042 | MS.gene052303:intron | 30.0% | |
| ACTGAATAACAGTATAAACG+AGG | - | chr4.2:33058488-33058507 | None:intergenic | 30.0% | |
| AGTAGGATGAATATATGGAA+TGG | + | chr4.2:33056514-33056533 | MS.gene052303:intron | 30.0% | |
| ATATAAGACAGCAATCAGAA+TGG | - | chr4.2:33056734-33056753 | None:intergenic | 30.0% | |
| ATATACTCAAACCCTTACAT+GGG | - | chr4.2:33054952-33054971 | None:intergenic | 30.0% | |
| ATCATAGTGTTAGAACAAAC+TGG | - | chr4.2:33057878-33057897 | None:intergenic | 30.0% | |
| ATTCATTGGAGGAAATATCT+AGG | + | chr4.2:33053077-33053096 | MS.gene052303:intron | 30.0% | |
| ATTGATATGAATACCAATGC+AGG | - | chr4.2:33052908-33052927 | None:intergenic | 30.0% | |
| CAATCAGTATGCAAAACAAA+AGG | - | chr4.2:33055403-33055422 | None:intergenic | 30.0% | |
| CTACATAAACACAAGTTTAC+TGG | - | chr4.2:33055282-33055301 | None:intergenic | 30.0% | |
| CTATCCATCGATAGATAAAA+AGG | - | chr4.2:33054179-33054198 | None:intergenic | 30.0% | |
| CTGAATAACAGTATAAACGA+GGG | - | chr4.2:33058487-33058506 | None:intergenic | 30.0% | |
| CTGGAAAAAATAGTTGTTTG+CGG | - | chr4.2:33055263-33055282 | None:intergenic | 30.0% | |
| CTTATCTAACAATTCGTTGT+TGG | + | chr4.2:33056416-33056435 | MS.gene052303:intron | 30.0% | |
| GTAGGATGAATATATGGAAT+GGG | + | chr4.2:33056515-33056534 | MS.gene052303:intron | 30.0% | |
| GTTAAGAATGAATTCATTGG+AGG | + | chr4.2:33053066-33053085 | MS.gene052303:intron | 30.0% | |
| GTTGGATCTCTTGTATAAAA+GGG | - | chr4.2:33053022-33053041 | None:intergenic | 30.0% | |
| TAGGATGAATATATGGAATG+GGG | + | chr4.2:33056516-33056535 | MS.gene052303:intron | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | - | chr4.2:33056126-33056145 | None:intergenic | 30.0% | |
| TCAAGGATTTCTGTATGAAA+TGG | + | chr4.2:33055916-33055935 | MS.gene052303:intron | 30.0% | |
| TCAGGTGATATAATAAATGG+TGG | - | chr4.2:33057992-33058011 | None:intergenic | 30.0% | |
| TCCGAATGTGTATTTATCAA+AGG | - | chr4.2:33057670-33057689 | None:intergenic | 30.0% | |
| TGGTATTATTACAATGCACT+TGG | + | chr4.2:33055069-33055088 | MS.gene052303:CDS | 30.0% | |
| TGTTGGATCTCTTGTATAAA+AGG | - | chr4.2:33053023-33053042 | None:intergenic | 30.0% | |
| TTGAAACGTACAATTTATGC+AGG | + | chr4.2:33054988-33055007 | MS.gene052303:intron | 30.0% | |
| ! | AAAAAGCTTTTATGCCATCT+TGG | - | chr4.2:33057340-33057359 | None:intergenic | 30.0% |
| ! | ACTTTTTACAGCCAGAAAAA+TGG | + | chr4.2:33054613-33054632 | MS.gene052303:CDS | 30.0% |
| ! | AGAGAAGCTTCAATACTTTT+AGG | - | chr4.2:33053585-33053604 | None:intergenic | 30.0% |
| ! | ATTACCCTGAATTTTACAAG+AGG | - | chr4.2:33054229-33054248 | None:intergenic | 30.0% |
| ! | CATGCTGTTTATGTAAATGT+GGG | + | chr4.2:33057844-33057863 | MS.gene052303:intron | 30.0% |
| ! | CTTTTTATCTATCGATGGAT+AGG | + | chr4.2:33054177-33054196 | MS.gene052303:intron | 30.0% |
| ! | GAAGAGTTAATTCTGAAAGA+GGG | + | chr4.2:33055581-33055600 | MS.gene052303:CDS | 30.0% |
| ! | TATCCTTTTTATTGCAGATG+AGG | + | chr4.2:33056655-33056674 | MS.gene052303:CDS | 30.0% |
| ! | TCAAACTTTTGATGTAAAGC+CGG | - | chr4.2:33055370-33055389 | None:intergenic | 30.0% |
| !! | ATTGAAAAGCACTATGAACT+GGG | - | chr4.2:33054012-33054031 | None:intergenic | 30.0% |
| !! | CAGTTTTATCAATTACTTGC+TGG | + | chr4.2:33053843-33053862 | MS.gene052303:intron | 30.0% |
| !! | GACACATGTTTGCTTATTTT+AGG | + | chr4.2:33057092-33057111 | MS.gene052303:intron | 30.0% |
| !! | TTAAAAGTGTTTCCTTCTAC+TGG | + | chr4.2:33055634-33055653 | MS.gene052303:intron | 30.0% |
| !!! | AACTTTCTTTTTTTCCTTGC+TGG | - | chr4.2:33054854-33054873 | None:intergenic | 30.0% |
| !!! | ATTTTTTCTGCTTCATCGTT+TGG | + | chr4.2:33057237-33057256 | MS.gene052303:intron | 30.0% |
| !!! | CACCTTATTTTCAGTTTTCA+AGG | + | chr4.2:33055899-33055918 | MS.gene052303:intron | 30.0% |
| !!! | GCGTCGTATTAGTTTTAAAA+TGG | - | chr4.2:33057215-33057234 | None:intergenic | 30.0% |
| !!! | GGCTTTTATTTTATTCTGTC+TGG | + | chr4.2:33057597-33057616 | MS.gene052303:intron | 30.0% |
| AAACTATCCTACTCCTATTC+AGG | + | chr4.2:33054439-33054458 | MS.gene052303:intron | 35.0% | |
| AAATTAAATGGGCAAAGGAG+TGG | - | chr4.2:33057568-33057587 | None:intergenic | 35.0% | |
| AACAAGCTTGTACTCCTTAT+TGG | - | chr4.2:33053178-33053197 | None:intergenic | 35.0% | |
| AATAGATACCTCTCCAATGA+TGG | - | chr4.2:33057372-33057391 | None:intergenic | 35.0% | |
| AATGTTGATGTTCCAGTAGA+AGG | - | chr4.2:33055649-33055668 | None:intergenic | 35.0% | |
| AATTAAATGGGCAAAGGAGT+GGG | - | chr4.2:33057567-33057586 | None:intergenic | 35.0% | |
| ACAAGCTTGTACTCCTTATT+GGG | - | chr4.2:33053177-33053196 | None:intergenic | 35.0% | |
| ACCTTGTCAAAATAAGTTGC+TGG | - | chr4.2:33055753-33055772 | None:intergenic | 35.0% | |
| AGAGAGAAAAAGGAAGAGAA+AGG | + | chr4.2:33056187-33056206 | MS.gene052303:intron | 35.0% | |
| ATACAAGAGATCCAACACAA+TGG | + | chr4.2:33053026-33053045 | MS.gene052303:intron | 35.0% | |
| ATAGATACCTCTCCAATGAT+GGG | - | chr4.2:33057371-33057390 | None:intergenic | 35.0% | |
| ATGATGTACATTACAGGAGT+AGG | + | chr4.2:33057893-33057912 | MS.gene052303:intron | 35.0% | |
| ATTAGATCTTTCACTGAACC+TGG | + | chr4.2:33054274-33054293 | MS.gene052303:intron | 35.0% | |
| ATTTATTGCAGAACCAGTGA+TGG | + | chr4.2:33055704-33055723 | MS.gene052303:CDS | 35.0% | |
| CAACTTCTTTAATTGTGCAG+TGG | - | chr4.2:33052849-33052868 | None:intergenic | 35.0% | |
| CAATCATCCTAGGTTCTTAA+GGG | + | chr4.2:33058139-33058158 | MS.gene052303:intron | 35.0% | |
| CAATGTGTATTTCAGTCTTC+CGG | + | chr4.2:33055348-33055367 | MS.gene052303:intron | 35.0% | |
| CATATACTCAAACCCTTACA+TGG | - | chr4.2:33054953-33054972 | None:intergenic | 35.0% | |
| CATTCACAAAGCAACAAACT+TGG | + | chr4.2:33057015-33057034 | MS.gene052303:CDS | 35.0% | |
| CCCAGTTAATCAGCATTTAT+GGG | + | chr4.2:33058582-33058601 | MS.gene052303:intron | 35.0% | |
| CTTGGACAAAACTATCAAGA+AGG | + | chr4.2:33053444-33053463 | MS.gene052303:intron | 35.0% | |
| GAGACATGTCAATATTAAGC+AGG | + | chr4.2:33057692-33057711 | MS.gene052303:intron | 35.0% | |
| GATAATTCCTTGTCTTCACA+GGG | + | chr4.2:33057271-33057290 | MS.gene052303:intron | 35.0% | |
| GATATTATTGTAGTGCTCGA+GGG | + | chr4.2:33053510-33053529 | MS.gene052303:intron | 35.0% | |
| GCAATGAACTTCTTCTTATC+TGG | - | chr4.2:33055099-33055118 | None:intergenic | 35.0% | |
| GTACCTCATCTGCAATAAAA+AGG | - | chr4.2:33056661-33056680 | None:intergenic | 35.0% | |
| GTAGCCTCTTGTAAAATTCA+GGG | + | chr4.2:33054222-33054241 | MS.gene052303:intron | 35.0% | |
| TAGATCCTAAACTAGAAAGG+AGG | - | chr4.2:33057721-33057740 | None:intergenic | 35.0% | |
| TATTGTTCACACTACCAAGA+CGG | + | chr4.2:33054121-33054140 | MS.gene052303:intron | 35.0% | |
| TCAATCATCCTAGGTTCTTA+AGG | + | chr4.2:33058138-33058157 | MS.gene052303:intron | 35.0% | |
| TCCCAGTTAATCAGCATTTA+TGG | + | chr4.2:33058581-33058600 | MS.gene052303:intron | 35.0% | |
| TCTCACAGGTAAAACTTGTA+TGG | + | chr4.2:33055049-33055068 | MS.gene052303:intron | 35.0% | |
| TCTCATGGATTCACTTATTC+TGG | + | chr4.2:33057122-33057141 | MS.gene052303:CDS | 35.0% | |
| TGATAATTCCTTGTCTTCAC+AGG | + | chr4.2:33057270-33057289 | MS.gene052303:intron | 35.0% | |
| TGTTTATGTTATGCTTGCAG+AGG | - | chr4.2:33058446-33058465 | None:intergenic | 35.0% | |
| TTAAGGTAATCTGTGCCTTT+GGG | + | chr4.2:33056772-33056791 | MS.gene052303:intron | 35.0% | |
| TTCCAGAAGGAATGGTAAAA+TGG | - | chr4.2:33052872-33052891 | None:intergenic | 35.0% | |
| TTGTCAAAATAAGTTGCTGG+TGG | - | chr4.2:33055750-33055769 | None:intergenic | 35.0% | |
| TTTATGCCATCTTGGAACTT+CGG | - | chr4.2:33057332-33057351 | None:intergenic | 35.0% | |
| TTTATTGCAGAACCAGTGAT+GGG | + | chr4.2:33055705-33055724 | MS.gene052303:CDS | 35.0% | |
| TTTGTGGTAAATCAGCTTAC+TGG | + | chr4.2:33057804-33057823 | MS.gene052303:intron | 35.0% | |
| ! | AAAAAGTTCTAGTAGCTCCT+TGG | - | chr4.2:33054600-33054619 | None:intergenic | 35.0% |
| ! | AGCACCTTTTTATCTATCGA+TGG | + | chr4.2:33054172-33054191 | MS.gene052303:intron | 35.0% |
| ! | AGCTACTATGCATACTTTTC+AGG | - | chr4.2:33055175-33055194 | None:intergenic | 35.0% |
| ! | ATTACTAGTCTAGTAATGCC+AGG | + | chr4.2:33056305-33056324 | MS.gene052303:intron | 35.0% |
| ! | CATGGCATCAGTTTTCAAAA+TGG | - | chr4.2:33056560-33056579 | None:intergenic | 35.0% |
| ! | CCCATAAATGCTGATTAACT+GGG | - | chr4.2:33058585-33058604 | None:intergenic | 35.0% |
| ! | CTACATTTTGTCAGGTATCA+TGG | + | chr4.2:33055204-33055223 | MS.gene052303:intron | 35.0% |
| ! | CTCATTTCTGTTTGACTTCT+AGG | + | chr4.2:33056927-33056946 | MS.gene052303:intron | 35.0% |
| ! | GACTTTTTGACAACCACTTT+TGG | - | chr4.2:33056249-33056268 | None:intergenic | 35.0% |
| ! | GCATGCTGTTTATGTAAATG+TGG | + | chr4.2:33057843-33057862 | MS.gene052303:intron | 35.0% |
| ! | GGAAGAGTTAATTCTGAAAG+AGG | + | chr4.2:33055580-33055599 | MS.gene052303:CDS | 35.0% |
| ! | GTTCAATTTTACCTTTGCCA+AGG | - | chr4.2:33056853-33056872 | None:intergenic | 35.0% |
| ! | TCCCATAAATGCTGATTAAC+TGG | - | chr4.2:33058586-33058605 | None:intergenic | 35.0% |
| ! | TCTCTCACTCATTCATTTTC+TGG | - | chr4.2:33053962-33053981 | None:intergenic | 35.0% |
| ! | TGCTGATTAACTGGGAAAAA+AGG | - | chr4.2:33058577-33058596 | None:intergenic | 35.0% |
| ! | TTTAAGGTAATCTGTGCCTT+TGG | + | chr4.2:33056771-33056790 | MS.gene052303:intron | 35.0% |
| !! | CATTGAAAAGCACTATGAAC+TGG | - | chr4.2:33054013-33054032 | None:intergenic | 35.0% |
| !! | GAGAGGTATCTATTATTTGC+TGG | + | chr4.2:33057378-33057397 | MS.gene052303:intron | 35.0% |
| !! | GCTGGTTAGTTTAAAGTTTG+TGG | + | chr4.2:33057396-33057415 | MS.gene052303:intron | 35.0% |
| !!! | AAAAGCTTTGGCCATTTTTC+TGG | - | chr4.2:33054627-33054646 | None:intergenic | 35.0% |
| !!! | AACATCTTTTAGGGCCTATT+TGG | - | chr4.2:33055989-33056008 | None:intergenic | 35.0% |
| !!! | ACCAGCAACTTATTTTGACA+AGG | + | chr4.2:33055749-33055768 | MS.gene052303:CDS | 35.0% |
| !!! | TTTCTTTTTTTCCTTGCTGG+AGG | - | chr4.2:33054851-33054870 | None:intergenic | 35.0% |
| ATGATCCATTTCCTCCTGAA+TGG | + | chr4.2:33057517-33057536 | MS.gene052303:CDS | 40.0% | |
| ATGCATGCATGAACTACCTA+AGG | - | chr4.2:33053134-33053153 | None:intergenic | 40.0% | |
| ATGCATGCTTATGACATCTC+AGG | + | chr4.2:33055515-33055534 | MS.gene052303:intron | 40.0% | |
| ATGGAGGAGCAAATTATGCA+TGG | - | chr4.2:33056578-33056597 | None:intergenic | 40.0% | |
| CAAGCTTGTACTCCTTATTG+GGG | - | chr4.2:33053176-33053195 | None:intergenic | 40.0% | |
| CAGAATGGAAAACTCCAAAC+AGG | - | chr4.2:33056719-33056738 | None:intergenic | 40.0% | |
| CATACTTCTTGACAACAGCT+TGG | - | chr4.2:33056634-33056653 | None:intergenic | 40.0% | |
| CTCTTCTGTTCAATCATCCT+AGG | + | chr4.2:33058129-33058148 | MS.gene052303:intron | 40.0% | |
| CTTTATACAGGATCTAGCCA+AGG | + | chr4.2:33054580-33054599 | MS.gene052303:intron | 40.0% | |
| GACTTGTAGAAACCCCAATA+AGG | + | chr4.2:33053161-33053180 | MS.gene052303:intron | 40.0% | |
| GACTTGTATGTTTGGATGTG+TGG | - | chr4.2:33058316-33058335 | None:intergenic | 40.0% | |
| GAGAGAAAGTTGTCCAAAAG+TGG | + | chr4.2:33056233-33056252 | MS.gene052303:intron | 40.0% | |
| GATGAATATATGGAATGGGG+TGG | + | chr4.2:33056519-33056538 | MS.gene052303:intron | 40.0% | |
| GGATATTATTGTAGTGCTCG+AGG | + | chr4.2:33053509-33053528 | MS.gene052303:intron | 40.0% | |
| GGTAGCCTCTTGTAAAATTC+AGG | + | chr4.2:33054221-33054240 | MS.gene052303:intron | 40.0% | |
| GTATGCAAAACAAAAGGAGC+TGG | - | chr4.2:33055397-33055416 | None:intergenic | 40.0% | |
| TACACTCTCTGCAAAGGAAA+GGG | + | chr4.2:33054357-33054376 | MS.gene052303:intron | 40.0% | |
| TACTAGTTCAAGCAAAAGCC+TGG | - | chr4.2:33056326-33056345 | None:intergenic | 40.0% | |
| TCAGGAGGAAATGGATCATT+GGG | - | chr4.2:33057516-33057535 | None:intergenic | 40.0% | |
| TCATTCAGCACCTCATCTTT+AGG | + | chr4.2:33057057-33057076 | MS.gene052303:intron | 40.0% | |
| TCTAACAATTCGTTGTTGGC+CGG | + | chr4.2:33056420-33056439 | MS.gene052303:intron | 40.0% | |
| TCTTCTGCATACATGCCAAT+TGG | + | chr4.2:33056955-33056974 | MS.gene052303:CDS | 40.0% | |
| TGATCCATTTCCTCCTGAAT+GGG | + | chr4.2:33057518-33057537 | MS.gene052303:CDS | 40.0% | |
| TTACACTCTCTGCAAAGGAA+AGG | + | chr4.2:33054356-33054375 | MS.gene052303:intron | 40.0% | |
| TTACCTTTGCCAAGGAAACA+AGG | - | chr4.2:33056845-33056864 | None:intergenic | 40.0% | |
| TTATTGCAGAACCAGTGATG+GGG | + | chr4.2:33055706-33055725 | MS.gene052303:CDS | 40.0% | |
| TTCAGGAGGAAATGGATCAT+TGG | - | chr4.2:33057517-33057536 | None:intergenic | 40.0% | |
| TTCCAAATTGTTGGCCAATC+TGG | - | chr4.2:33055564-33055583 | None:intergenic | 40.0% | |
| TTGAAAGTAAGCAACCGTCT+TGG | - | chr4.2:33054138-33054157 | None:intergenic | 40.0% | |
| TTTCTTTCCCTGTGAAGACA+AGG | - | chr4.2:33057281-33057300 | None:intergenic | 40.0% | |
| ! | AAACTGCACAATCTAGCCTT+AGG | + | chr4.2:33053115-33053134 | MS.gene052303:intron | 40.0% |
| ! | AACCAGATTGGCCAACAATT+TGG | + | chr4.2:33055559-33055578 | MS.gene052303:CDS | 40.0% |
| ! | ACTTGGTTGCCCTTTTTAGA+TGG | + | chr4.2:33054318-33054337 | MS.gene052303:intron | 40.0% |
| ! | ATACTGATTGTCCACACTAC+TGG | + | chr4.2:33055413-33055432 | MS.gene052303:CDS | 40.0% |
| ! | TTTTCTGACAGTCCCATCAT+TGG | + | chr4.2:33057356-33057375 | MS.gene052303:CDS | 40.0% |
| !! | GACTTCCACATTTTCAAGCT+GGG | + | chr4.2:33055801-33055820 | MS.gene052303:intron | 40.0% |
| !! | GCTTCTCTAAAGTTGTTGCT+TGG | + | chr4.2:33053597-33053616 | MS.gene052303:intron | 40.0% |
| !! | GGCTGATTGACTTGTATGTT+TGG | - | chr4.2:33058324-33058343 | None:intergenic | 40.0% |
| !! | TACCTTTTTAATTGCGGGGA+GGG | + | chr4.2:33054385-33054404 | MS.gene052303:intron | 40.0% |
| !! | TGACTTCCACATTTTCAAGC+TGG | + | chr4.2:33055800-33055819 | MS.gene052303:intron | 40.0% |
| !! | TGGGAAAGCTTTAAGAGAGA+CGG | + | chr4.2:33058601-33058620 | MS.gene052303:CDS | 40.0% |
| !! | TTACCTTTTTAATTGCGGGG+AGG | + | chr4.2:33054384-33054403 | MS.gene052303:intron | 40.0% |
| !!! | TGCCATTTTACCATTCCTTC+TGG | + | chr4.2:33052867-33052886 | MS.gene052303:CDS | 40.0% |
| AAGTGCAACAACACAGGGTA+CGG | - | chr4.2:33057153-33057172 | None:intergenic | 45.0% | |
| ACATCAACTGTGTGCATGAC+AGG | - | chr4.2:33054509-33054528 | None:intergenic | 45.0% | |
| ACTTCTCGATCTGCAGATAC+GGG | + | chr4.2:33057446-33057465 | MS.gene052303:intron | 45.0% | |
| AGCCTATGCACATTCTCATC+AGG | + | chr4.2:33058340-33058359 | MS.gene052303:intron | 45.0% | |
| AGGTTCTTAAGGGACCTCAT+TGG | + | chr4.2:33058149-33058168 | MS.gene052303:intron | 45.0% | |
| AGTAGGCCGTCCATCTAAAA+AGG | - | chr4.2:33054331-33054350 | None:intergenic | 45.0% | |
| ATAGCTCCGAAGTTCCAAGA+TGG | + | chr4.2:33057323-33057342 | MS.gene052303:CDS | 45.0% | |
| ATCACCTGAAGAAGTTGACG+AGG | + | chr4.2:33058003-33058022 | MS.gene052303:CDS | 45.0% | |
| ATGAGGTCCCTTAAGAACCT+AGG | - | chr4.2:33058149-33058168 | None:intergenic | 45.0% | |
| CAAACACACCTGAGTGTCAT+TGG | - | chr4.2:33054672-33054691 | None:intergenic | 45.0% | |
| CACTTCTCGATCTGCAGATA+CGG | + | chr4.2:33057445-33057464 | MS.gene052303:intron | 45.0% | |
| CCTATGCACATTCTCATCAG+GGG | + | chr4.2:33058342-33058361 | MS.gene052303:intron | 45.0% | |
| CTAGAAGGTTTGGCCTGAAT+AGG | - | chr4.2:33054455-33054474 | None:intergenic | 45.0% | |
| CTATTCAGGCCAAACCTTCT+AGG | + | chr4.2:33054453-33054472 | MS.gene052303:intron | 45.0% | |
| CTCACAAGGATAGCTCCAAT+TGG | - | chr4.2:33056973-33056992 | None:intergenic | 45.0% | |
| CTGTAATTTCAGGGCTCACA+AGG | - | chr4.2:33056987-33057006 | None:intergenic | 45.0% | |
| GAATACCAATGCAGGTCTTG+TGG | - | chr4.2:33052900-33052919 | None:intergenic | 45.0% | |
| GATCCATTTCCTCCTGAATG+GGG | + | chr4.2:33057519-33057538 | MS.gene052303:CDS | 45.0% | |
| GCAACTTACACTCTCTGCAA+AGG | + | chr4.2:33054351-33054370 | MS.gene052303:intron | 45.0% | |
| GCCTATGCACATTCTCATCA+GGG | + | chr4.2:33058341-33058360 | MS.gene052303:intron | 45.0% | |
| GCTTCAAGTGCAACAACACA+GGG | - | chr4.2:33057158-33057177 | None:intergenic | 45.0% | |
| GTAGGCCGTCCATCTAAAAA+GGG | - | chr4.2:33054330-33054349 | None:intergenic | 45.0% | |
| GTTACCTCGTCAACTTCTTC+AGG | - | chr4.2:33058010-33058029 | None:intergenic | 45.0% | |
| TATTGCAGAACCAGTGATGG+GGG | + | chr4.2:33055707-33055726 | MS.gene052303:CDS | 45.0% | |
| TCTTGTGGTTCGATTCCAGA+AGG | - | chr4.2:33052885-33052904 | None:intergenic | 45.0% | |
| TGATAGCAGCCAGTCTTTCT+GGG | + | chr4.2:33055235-33055254 | MS.gene052303:CDS | 45.0% | |
| TGCTTCAAGTGCAACAACAC+AGG | - | chr4.2:33057159-33057178 | None:intergenic | 45.0% | |
| TGGTTCGATTCCAGAAGGAA+TGG | - | chr4.2:33052880-33052899 | None:intergenic | 45.0% | |
| TGTCTACAAACTCAGTCCCT+AGG | - | chr4.2:33057485-33057504 | None:intergenic | 45.0% | |
| TTCCCTCCCCGCAATTAAAA+AGG | - | chr4.2:33054390-33054409 | None:intergenic | 45.0% | |
| TTCTTAAGGGACCTCATTGG+CGG | + | chr4.2:33058152-33058171 | MS.gene052303:intron | 45.0% | |
| TTGCACCCAGCTTGAAAATG+TGG | - | chr4.2:33055809-33055828 | None:intergenic | 45.0% | |
| TTTGCCAAGGAAACAAGGTC+TGG | - | chr4.2:33056840-33056859 | None:intergenic | 45.0% | |
| ! | ACAGGAGTAGGTGCCTATTT+TGG | + | chr4.2:33057905-33057924 | MS.gene052303:intron | 45.0% |
| ! | AGACCTTGTTTCCTTGGCAA+AGG | + | chr4.2:33056839-33056858 | MS.gene052303:CDS | 45.0% |
| ! | CAGAGAGTGTAAGTTGCAGT+AGG | - | chr4.2:33054348-33054367 | None:intergenic | 45.0% |
| ! | GGTTGCCCTTTTTAGATGGA+CGG | + | chr4.2:33054322-33054341 | MS.gene052303:intron | 45.0% |
| ! | GTTGTTGCTTGGAGTTCAGA+TGG | + | chr4.2:33053608-33053627 | MS.gene052303:intron | 45.0% |
| ! | TAAGCCAGACCTTGTTTCCT+TGG | + | chr4.2:33056833-33056852 | MS.gene052303:CDS | 45.0% |
| ! | TTGATAGCAGCCAGTCTTTC+TGG | + | chr4.2:33055234-33055253 | MS.gene052303:CDS | 45.0% |
| !! | ACATTTTCAAGCTGGGTGCA+AGG | + | chr4.2:33055808-33055827 | MS.gene052303:intron | 45.0% |
| !! | GGCTTCCTCCTTTCTAGTTT+AGG | + | chr4.2:33057713-33057732 | MS.gene052303:intron | 45.0% |
| !! | TGAAAGGCACCTAGAAGGTT+TGG | - | chr4.2:33054465-33054484 | None:intergenic | 45.0% |
| !! | AAAAAATTATACTAATTATA+AGG | - | chr4.2:33053342-33053361 | None:intergenic | 5.0% |
| !! | ATATTAATTAAATTTCAAAA+TGG | - | chr4.2:33054554-33054573 | None:intergenic | 5.0% |
| !! | TATTAAAAAAAATCAATTAT+AGG | - | chr4.2:33053374-33053393 | None:intergenic | 5.0% |
| AAGCTGGGTGCAAGGATTGT+TGG | + | chr4.2:33055816-33055835 | MS.gene052303:intron | 50.0% | |
| AATTGCGGGGAGGGAAATGA+TGG | + | chr4.2:33054394-33054413 | MS.gene052303:intron | 50.0% | |
| AGATGATACCGCCAGTAGTG+TGG | - | chr4.2:33055427-33055446 | None:intergenic | 50.0% | |
| AGCTGGGTGCAAGGATTGTT+GGG | + | chr4.2:33055817-33055836 | MS.gene052303:intron | 50.0% | |
| AGGTAATCTGTGCCTTTGGG+AGG | + | chr4.2:33056775-33056794 | MS.gene052303:intron | 50.0% | |
| AGTGCAACAACACAGGGTAC+GGG | - | chr4.2:33057152-33057171 | None:intergenic | 50.0% | |
| CAACTGTGTGCATGACAGGA+AGG | - | chr4.2:33054505-33054524 | None:intergenic | 50.0% | |
| CATATACCCAAGCCTCCCAA+AGG | - | chr4.2:33056790-33056809 | None:intergenic | 50.0% | |
| CCCCTGATGAGAATGTGCAT+AGG | - | chr4.2:33058345-33058364 | None:intergenic | 50.0% | |
| CTCAGAAGCCAATGACACTC+AGG | + | chr4.2:33054661-33054680 | MS.gene052303:CDS | 50.0% | |
| CTCGCACTGTGCTCCAAAAT+AGG | - | chr4.2:33057921-33057940 | None:intergenic | 50.0% | |
| CTGATTGTCCACACTACTGG+CGG | + | chr4.2:33055416-33055435 | MS.gene052303:CDS | 50.0% | |
| CTTCTCGATCTGCAGATACG+GGG | + | chr4.2:33057447-33057466 | MS.gene052303:intron | 50.0% | |
| GATCCAACACAATGGTCACG+AGG | + | chr4.2:33053034-33053053 | MS.gene052303:intron | 50.0% | |
| GATGCTAGTTCGTGTAGCTG+GGG | + | chr4.2:33057949-33057968 | MS.gene052303:CDS | 50.0% | |
| GCTCAAGTCTCAACGCAAGT+AGG | + | chr4.2:33058640-33058659 | MS.gene052303:CDS | 50.0% | |
| GGAAGAGTTCGCAACCAGAT+TGG | + | chr4.2:33055547-33055566 | MS.gene052303:CDS | 50.0% | |
| GGATGCTAGTTCGTGTAGCT+GGG | + | chr4.2:33057948-33057967 | MS.gene052303:CDS | 50.0% | |
| GGGAGGCTTGGGTATATGTT+TGG | + | chr4.2:33056792-33056811 | MS.gene052303:CDS | 50.0% | |
| GGTTTGGCCTGAATAGGAGT+AGG | - | chr4.2:33054449-33054468 | None:intergenic | 50.0% | |
| GTCTTGAACTTGCCCCATTC+AGG | - | chr4.2:33057534-33057553 | None:intergenic | 50.0% | |
| TACTGGCGGTATCATCTTCC+AGG | + | chr4.2:33055430-33055449 | MS.gene052303:CDS | 50.0% | |
| TCGAACCACAAGACCTGCAT+TGG | + | chr4.2:33052892-33052911 | MS.gene052303:CDS | 50.0% | |
| TCTGCTTCATCGTTTGGCTG+TGG | + | chr4.2:33057243-33057262 | MS.gene052303:intron | 50.0% | |
| TCTTAAGGGACCTCATTGGC+GGG | + | chr4.2:33058153-33058172 | MS.gene052303:intron | 50.0% | |
| TCTTTCACTGAACCTGGCCA+TGG | + | chr4.2:33054280-33054299 | MS.gene052303:intron | 50.0% | |
| TGACAGTCCCATCATTGGAG+AGG | + | chr4.2:33057361-33057380 | MS.gene052303:CDS | 50.0% | |
| TGACATCTCAGGTGAGACAG+AGG | + | chr4.2:33055526-33055545 | MS.gene052303:intron | 50.0% | |
| TTGAACTTGCCCCATTCAGG+AGG | - | chr4.2:33057531-33057550 | None:intergenic | 50.0% | |
| TTGCCCCATTCAGGAGGAAA+TGG | - | chr4.2:33057525-33057544 | None:intergenic | 50.0% | |
| TTGCCTCGTGACCATTGTGT+TGG | - | chr4.2:33053040-33053059 | None:intergenic | 50.0% | |
| TTTGCGGTACCCAGAAAGAC+TGG | - | chr4.2:33055247-33055266 | None:intergenic | 50.0% | |
| !! | TGCAGTGAAAGGCACCTAGA+AGG | - | chr4.2:33054470-33054489 | None:intergenic | 50.0% |
| CTTAAGGGACCTCATTGGCG+GGG | + | chr4.2:33058154-33058173 | MS.gene052303:intron | 55.0% | |
| GATCTGCAGATACGGGGAAC+TGG | + | chr4.2:33057453-33057472 | MS.gene052303:intron | 55.0% | |
| GGGATGCTAGTTCGTGTAGC+TGG | + | chr4.2:33057947-33057966 | MS.gene052303:CDS | 55.0% | |
| GTGCAGTGGCAGCATCAACA+AGG | - | chr4.2:33052835-33052854 | None:intergenic | 55.0% | |
| TATGCATGTCCCCGCCAATG+AGG | - | chr4.2:33058166-33058185 | None:intergenic | 55.0% | |
| TGCAACAGCTACCTCCAGCA+AGG | + | chr4.2:33054837-33054856 | MS.gene052303:intron | 55.0% | |
| ! | ATCTGTGCCTTTGGGAGGCT+TGG | + | chr4.2:33056780-33056799 | MS.gene052303:CDS | 55.0% |
| ! | GAGCACAGTGCGAGAAGCAT+GGG | + | chr4.2:33057927-33057946 | MS.gene052303:CDS | 55.0% |
| ! | TCTGTGCCTTTGGGAGGCTT+GGG | + | chr4.2:33056781-33056800 | MS.gene052303:CDS | 55.0% |
| !! | GGGGAACTGGCTTGATCCTA+GGG | + | chr4.2:33057466-33057485 | MS.gene052303:CDS | 55.0% |
| AGAAAGCTCCTGCCATGGCC+AGG | - | chr4.2:33054295-33054314 | None:intergenic | 60.0% | |
| GCTCGAGGGAGTCACGAGAA+AGG | + | chr4.2:33053524-33053543 | MS.gene052303:intron | 60.0% | |
| GGAGCACAGTGCGAGAAGCA+TGG | + | chr4.2:33057926-33057945 | MS.gene052303:CDS | 60.0% | |
| GTGCCAGAAAGCTCCTGCCA+TGG | - | chr4.2:33054300-33054319 | None:intergenic | 60.0% | |
| TCACTGAACCTGGCCATGGC+AGG | + | chr4.2:33054284-33054303 | MS.gene052303:intron | 60.0% | |
| TGGCCATGGCAGGAGCTTTC+TGG | + | chr4.2:33054294-33054313 | MS.gene052303:intron | 60.0% | |
| ! | GGCAGGAGCTTTCTGGCACT+TGG | + | chr4.2:33054301-33054320 | MS.gene052303:intron | 60.0% |
| !! | CGGGGAACTGGCTTGATCCT+AGG | + | chr4.2:33057465-33057484 | MS.gene052303:CDS | 60.0% |
| ACACCACCAGCCCCCATCAC+TGG | - | chr4.2:33055720-33055739 | None:intergenic | 65.0% | |
| ! | GAACCAGTGATGGGGGCTGG+TGG | + | chr4.2:33055714-33055733 | MS.gene052303:CDS | 65.0% |
| ! | GCAGAACCAGTGATGGGGGC+TGG | + | chr4.2:33055711-33055730 | MS.gene052303:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 33052816 | 33058661 | 33052816 | ID=MS.gene052303 |
| chr4.2 | mRNA | 33052816 | 33058661 | 33052816 | ID=MS.gene052303.t1;Parent=MS.gene052303 |
| chr4.2 | exon | 33052816 | 33052913 | 33052816 | ID=MS.gene052303.t1.exon1;Parent=MS.gene052303.t1 |
| chr4.2 | CDS | 33052816 | 33052913 | 33052816 | ID=cds.MS.gene052303.t1;Parent=MS.gene052303.t1 |
| chr4.2 | exon | 33054590 | 33054682 | 33054590 | ID=MS.gene052303.t1.exon2;Parent=MS.gene052303.t1 |
| chr4.2 | CDS | 33054590 | 33054682 | 33054590 | ID=cds.MS.gene052303.t1;Parent=MS.gene052303.t1 |
| chr4.2 | exon | 33055057 | 33055130 | 33055057 | ID=MS.gene052303.t1.exon3;Parent=MS.gene052303.t1 |
| chr4.2 | CDS | 33055057 | 33055130 | 33055057 | ID=cds.MS.gene052303.t1;Parent=MS.gene052303.t1 |
| chr4.2 | exon | 33055218 | 33055256 | 33055218 | ID=MS.gene052303.t1.exon4;Parent=MS.gene052303.t1 |
| chr4.2 | CDS | 33055218 | 33055256 | 33055218 | ID=cds.MS.gene052303.t1;Parent=MS.gene052303.t1 |
| chr4.2 | exon | 33055363 | 33055451 | 33055363 | ID=MS.gene052303.t1.exon5;Parent=MS.gene052303.t1 |
| chr4.2 | CDS | 33055363 | 33055451 | 33055363 | ID=cds.MS.gene052303.t1;Parent=MS.gene052303.t1 |
| chr4.2 | exon | 33055537 | 33055613 | 33055537 | ID=MS.gene052303.t1.exon6;Parent=MS.gene052303.t1 |
| chr4.2 | CDS | 33055537 | 33055613 | 33055537 | ID=cds.MS.gene052303.t1;Parent=MS.gene052303.t1 |
| chr4.2 | exon | 33055696 | 33055770 | 33055696 | ID=MS.gene052303.t1.exon7;Parent=MS.gene052303.t1 |
| chr4.2 | CDS | 33055696 | 33055770 | 33055696 | ID=cds.MS.gene052303.t1;Parent=MS.gene052303.t1 |
| chr4.2 | exon | 33056629 | 33056676 | 33056629 | ID=MS.gene052303.t1.exon8;Parent=MS.gene052303.t1 |
| chr4.2 | CDS | 33056629 | 33056676 | 33056629 | ID=cds.MS.gene052303.t1;Parent=MS.gene052303.t1 |
| chr4.2 | exon | 33056777 | 33056860 | 33056777 | ID=MS.gene052303.t1.exon9;Parent=MS.gene052303.t1 |
| chr4.2 | CDS | 33056777 | 33056860 | 33056777 | ID=cds.MS.gene052303.t1;Parent=MS.gene052303.t1 |
| chr4.2 | exon | 33056949 | 33057036 | 33056949 | ID=MS.gene052303.t1.exon10;Parent=MS.gene052303.t1 |
| chr4.2 | CDS | 33056949 | 33057036 | 33056949 | ID=cds.MS.gene052303.t1;Parent=MS.gene052303.t1 |
| chr4.2 | exon | 33057114 | 33057192 | 33057114 | ID=MS.gene052303.t1.exon11;Parent=MS.gene052303.t1 |
| chr4.2 | CDS | 33057114 | 33057192 | 33057114 | ID=cds.MS.gene052303.t1;Parent=MS.gene052303.t1 |
| chr4.2 | exon | 33057292 | 33057382 | 33057292 | ID=MS.gene052303.t1.exon12;Parent=MS.gene052303.t1 |
| chr4.2 | CDS | 33057292 | 33057382 | 33057292 | ID=cds.MS.gene052303.t1;Parent=MS.gene052303.t1 |
| chr4.2 | exon | 33057462 | 33057540 | 33057462 | ID=MS.gene052303.t1.exon13;Parent=MS.gene052303.t1 |
| chr4.2 | CDS | 33057462 | 33057540 | 33057462 | ID=cds.MS.gene052303.t1;Parent=MS.gene052303.t1 |
| chr4.2 | exon | 33057909 | 33058024 | 33057909 | ID=MS.gene052303.t1.exon14;Parent=MS.gene052303.t1 |
| chr4.2 | CDS | 33057909 | 33058024 | 33057909 | ID=cds.MS.gene052303.t1;Parent=MS.gene052303.t1 |
| chr4.2 | exon | 33058587 | 33058661 | 33058587 | ID=MS.gene052303.t1.exon15;Parent=MS.gene052303.t1 |
| chr4.2 | CDS | 33058587 | 33058661 | 33058587 | ID=cds.MS.gene052303.t1;Parent=MS.gene052303.t1 |
| Gene Sequence |
| Protein sequence |
