Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053156.t1 | RHN58420.1 | 95 | 80 | 4 | 0 | 1 | 80 | 57 | 136 | 4.00E-36 | 161 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053156.t1 | Q8H1G0 | 64.6 | 79 | 28 | 0 | 1 | 79 | 179 | 257 | 7.5e-23 | 108.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053156.t1 | A0A396HYL3 | 95.0 | 80 | 4 | 0 | 1 | 80 | 57 | 136 | 2.9e-36 | 161.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene053156.t1 | TF | C2C2-GATA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053156 | MS.gene054568 | 0.802687 | 4.98E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053156.t1 | MTR_4g008070 | 93.671 | 79 | 5 | 0 | 1 | 79 | 1 | 79 | 4.69e-52 | 160 |
MS.gene053156.t1 | MTR_3g100050 | 46.729 | 107 | 42 | 4 | 1 | 103 | 164 | 259 | 2.49e-20 | 84.7 |
MS.gene053156.t1 | MTR_5g066510 | 53.165 | 79 | 29 | 3 | 1 | 79 | 167 | 237 | 8.16e-19 | 80.5 |
MS.gene053156.t1 | MTR_4g093730 | 49.367 | 79 | 33 | 2 | 1 | 79 | 140 | 211 | 1.65e-16 | 74.7 |
MS.gene053156.t1 | MTR_3g100040 | 46.914 | 81 | 34 | 3 | 1 | 79 | 59 | 132 | 1.92e-16 | 73.6 |
MS.gene053156.t1 | MTR_3g100040 | 46.914 | 81 | 34 | 3 | 1 | 79 | 163 | 236 | 2.06e-16 | 74.7 |
MS.gene053156.t1 | MTR_3g060200 | 42.353 | 85 | 39 | 4 | 1 | 82 | 10 | 87 | 4.91e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053156.t1 | AT1G51600 | 64.557 | 79 | 28 | 0 | 1 | 79 | 179 | 257 | 1.06e-30 | 112 |
MS.gene053156.t1 | AT1G51600 | 64.557 | 79 | 28 | 0 | 1 | 79 | 179 | 257 | 1.06e-30 | 112 |
MS.gene053156.t1 | AT3G21175 | 58.228 | 79 | 33 | 0 | 1 | 79 | 175 | 253 | 8.29e-28 | 104 |
MS.gene053156.t1 | AT3G21175 | 58.228 | 79 | 33 | 0 | 1 | 79 | 173 | 251 | 8.52e-28 | 104 |
MS.gene053156.t1 | AT4G24470 | 53.165 | 79 | 29 | 2 | 1 | 79 | 178 | 248 | 5.85e-21 | 86.7 |
MS.gene053156.t1 | AT4G24470 | 53.165 | 79 | 29 | 2 | 1 | 79 | 178 | 248 | 6.89e-21 | 86.3 |
MS.gene053156.t1 | AT4G24470 | 53.165 | 79 | 29 | 2 | 1 | 79 | 178 | 248 | 6.89e-21 | 86.3 |
Find 34 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGACTTCTGTGGGCAAATA+AGG | 0.252080 | 4.2:+91918752 | MS.gene053156:CDS |
CAGAGGGTTCTTGGCCCTTC+AGG | 0.272302 | 4.2:-91918720 | None:intergenic |
CAAGCATTGCAGAGGGTTCT+TGG | 0.288221 | 4.2:-91918729 | None:intergenic |
TTTAGGATGCAAAGAAATAA+AGG | 0.333460 | 4.2:+91918328 | None:intergenic |
CGGAACAAGTGAAGGTTTGA+TGG | 0.376343 | 4.2:+91918408 | MS.gene053156:CDS |
TCAGGTCCACGCCGCATCAT+TGG | 0.388420 | 4.2:-91918702 | None:intergenic |
AATCTGCTCTTGCATTTCCT+TGG | 0.389102 | 4.2:+91920186 | MS.gene053156:CDS |
CTTGCTCGTCCAGCAAATCT+TGG | 0.389269 | 4.2:+91920242 | MS.gene053156:CDS |
CTTACACATTATCTTGCTGT+TGG | 0.460419 | 4.2:-91918447 | None:intergenic |
AGACTCATCATGGTTGGACT+TGG | 0.463495 | 4.2:-91918365 | None:intergenic |
TTACACATTATCTTGCTGTT+GGG | 0.464252 | 4.2:-91918446 | None:intergenic |
TGGACTTGGCAGATGTAAAT+CGG | 0.465549 | 4.2:-91918351 | None:intergenic |
CAGCCGATGCAGACTCATCA+TGG | 0.498772 | 4.2:-91918375 | None:intergenic |
CAATGCTTGTGGACTTCTGT+GGG | 0.512002 | 4.2:+91918743 | MS.gene053156:CDS |
GCAATGCTTGTGGACTTCTG+TGG | 0.515681 | 4.2:+91918742 | MS.gene053156:CDS |
ATGATGCGGCGTGGACCTGA+AGG | 0.535411 | 4.2:+91918705 | MS.gene053156:CDS |
CTAGGCAAGCAGATTTCGCT+AGG | 0.535424 | 4.2:-91920161 | None:intergenic |
AGAACCCTCTGCAATGCTTG+TGG | 0.537519 | 4.2:+91918732 | MS.gene053156:CDS |
ATGAATTGCGGAACAAGTGA+AGG | 0.546961 | 4.2:+91918400 | MS.gene053156:CDS |
CGATGCAGACTCATCATGGT+TGG | 0.584481 | 4.2:-91918371 | None:intergenic |
TTTGAATTCAAAGGTTTCTG+GGG | 0.588438 | 4.2:-91920292 | None:intergenic |
CAACCATGATGAGTCTGCAT+CGG | 0.601385 | 4.2:+91918372 | MS.gene053156:CDS |
TGATGCGGCGTGGACCTGAA+GGG | 0.602634 | 4.2:+91918706 | MS.gene053156:CDS |
GGTTTGATGGCAGACAATGA+TGG | 0.622019 | 4.2:+91918421 | MS.gene053156:CDS |
AGAAGTGCACGCCAATGATG+CGG | 0.629029 | 4.2:+91918691 | MS.gene053156:CDS |
CAAGAGCGAGGCTAAAACGA+GGG | 0.634100 | 4.2:-91920223 | None:intergenic |
GCATCGGCTGAAATGAATTG+CGG | 0.643791 | 4.2:+91918388 | MS.gene053156:CDS |
GAAGTCCACAAGCATTGCAG+AGG | 0.650799 | 4.2:-91918737 | None:intergenic |
AATGCAAGAGCAGATTCACT+AGG | 0.654865 | 4.2:-91920179 | None:intergenic |
GGGACTCTAGAGAAGTTCCA+AGG | 0.658041 | 4.2:-91920203 | None:intergenic |
TGCACGCCAATGATGCGGCG+TGG | 0.659677 | 4.2:+91918696 | MS.gene053156:CDS |
TTGCTGGACGAGCAAGAGCG+AGG | 0.669033 | 4.2:-91920235 | None:intergenic |
AAGTCCACAAGCATTGCAGA+GGG | 0.669436 | 4.2:-91918736 | None:intergenic |
GCAAGAGCGAGGCTAAAACG+AGG | 0.671797 | 4.2:-91920224 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CTATTTATCAAATAATATAA+AGG | - | chr4.2:91918626-91918645 | None:intergenic | 10.0% |
!! | GTATTAAAAAAAATTCAATT+TGG | - | chr4.2:91920020-91920039 | None:intergenic | 10.0% |
!! | TTCAGTATAAAATAATATAA+AGG | - | chr4.2:91918598-91918617 | None:intergenic | 10.0% |
!! | GTATTCTAATCTATATATTA+TGG | + | chr4.2:91918512-91918531 | MS.gene053156:intron | 15.0% |
!! | ACCAACACAATTATAAATAA+GGG | - | chr4.2:91919731-91919750 | None:intergenic | 20.0% |
!! | AGCTTGAAAATAATCTTATT+TGG | + | chr4.2:91918545-91918564 | MS.gene053156:intron | 20.0% |
!! | ATATTAAAAGAGACATGAAT+TGG | + | chr4.2:91919914-91919933 | MS.gene053156:intron | 20.0% |
!! | CAAAAATTGTTTCATAATCT+TGG | - | chr4.2:91919790-91919809 | None:intergenic | 20.0% |
!!! | TATTAAATTTTTTGGGACTA+GGG | - | chr4.2:91920042-91920061 | None:intergenic | 20.0% |
!!! | TTTTGGAAAAGAATTTATCA+AGG | + | chr4.2:91919463-91919482 | MS.gene053156:intron | 20.0% |
! | ACACATAATCTTATAGAAAG+AGG | - | chr4.2:91919832-91919851 | None:intergenic | 25.0% |
! | ATAAAGGACAATTTCAGTAT+AGG | - | chr4.2:91918582-91918601 | None:intergenic | 25.0% |
! | ATTAACCCGTAATAATTGTA+TGG | - | chr4.2:91918840-91918859 | None:intergenic | 25.0% |
! | CCAACACAATTATAAATAAG+GGG | - | chr4.2:91919730-91919749 | None:intergenic | 25.0% |
! | GACCAACACAATTATAAATA+AGG | - | chr4.2:91919732-91919751 | None:intergenic | 25.0% |
! | TCACTTACACAATTATAGAT+TGG | - | chr4.2:91919867-91919886 | None:intergenic | 25.0% |
!! | AGTTGCAATTTTGAATTCAA+AGG | - | chr4.2:91920304-91920323 | None:intergenic | 25.0% |
!! | ATTTTGAATTCAAAGGTTTC+TGG | - | chr4.2:91920297-91920316 | None:intergenic | 25.0% |
!! | TCAAAATTGCAACTTTTCTT+TGG | + | chr4.2:91920310-91920329 | MS.gene053156:CDS | 25.0% |
!! | TTTTGAATTCAAAGGTTTCT+GGG | - | chr4.2:91920296-91920315 | None:intergenic | 25.0% |
!!! | AAGGTTTTTTTGAAGCAATT+TGG | + | chr4.2:91919434-91919453 | MS.gene053156:intron | 25.0% |
!!! | ACTGGTTTATTTTTGAACAA+GGG | + | chr4.2:91918473-91918492 | MS.gene053156:intron | 25.0% |
!!! | AGGTTTTTTTGAAGCAATTT+GGG | + | chr4.2:91919435-91919454 | MS.gene053156:intron | 25.0% |
!!! | CTATTAAATTTTTTGGGACT+AGG | - | chr4.2:91920043-91920062 | None:intergenic | 25.0% |
AAATGTGAAGATGCATAAAC+AGG | - | chr4.2:91919116-91919135 | None:intergenic | 30.0% | |
AAGATAATGTGTAAGTAGAC+TGG | + | chr4.2:91918455-91918474 | MS.gene053156:intron | 30.0% | |
AATGTGAAGATGCATAAACA+GGG | - | chr4.2:91919115-91919134 | None:intergenic | 30.0% | |
ACAAAATGAAGAAGTTAGAG+AGG | + | chr4.2:91919493-91919512 | MS.gene053156:intron | 30.0% | |
ACTTACGTAAATTACGTGTA+AGG | + | chr4.2:91919692-91919711 | MS.gene053156:intron | 30.0% | |
AGCAACATTGGAAAAACAAA+AGG | - | chr4.2:91918817-91918836 | None:intergenic | 30.0% | |
ATAATTGTATGGAGCAACAT+TGG | - | chr4.2:91918829-91918848 | None:intergenic | 30.0% | |
ATATGCAGAAGTTGTTAGTT+GGG | + | chr4.2:91919302-91919321 | MS.gene053156:intron | 30.0% | |
ATCTTGGCATAAACTTATGT+TGG | - | chr4.2:91919774-91919793 | None:intergenic | 30.0% | |
CAAAATGAAGAAGTTAGAGA+GGG | + | chr4.2:91919494-91919513 | MS.gene053156:intron | 30.0% | |
CCTGTAATATTGATCCAATT+CGG | + | chr4.2:91918873-91918892 | MS.gene053156:intron | 30.0% | |
CGAATTGGATCAATATTACA+GGG | - | chr4.2:91918875-91918894 | None:intergenic | 30.0% | |
GAATAGAAGACATGAATAAG+AGG | + | chr4.2:91919972-91919991 | MS.gene053156:intron | 30.0% | |
GATAGAATCTCTTTGTGAAA+TGG | + | chr4.2:91920097-91920116 | MS.gene053156:intron | 30.0% | |
GATGAATTTGACGTTGTTAA+TGG | + | chr4.2:91919327-91919346 | MS.gene053156:intron | 30.0% | |
GTTGCTCCATACAATTATTA+CGG | + | chr4.2:91918831-91918850 | MS.gene053156:intron | 30.0% | |
TATATGCAGAAGTTGTTAGT+TGG | + | chr4.2:91919301-91919320 | MS.gene053156:intron | 30.0% | |
TCACAATGACAGATAAATGA+GGG | - | chr4.2:91918949-91918968 | None:intergenic | 30.0% | |
TCATCTTCTAATGAATCGTA+TGG | + | chr4.2:91919163-91919182 | MS.gene053156:intron | 30.0% | |
TCATTGTGAATGTGTTAAAG+TGG | + | chr4.2:91918960-91918979 | MS.gene053156:intron | 30.0% | |
TGTAAGTGAATGTTCTGATT+AGG | + | chr4.2:91919878-91919897 | MS.gene053156:intron | 30.0% | |
TTACGTGTAAGGATATGAAT+TGG | + | chr4.2:91919703-91919722 | MS.gene053156:intron | 30.0% | |
TTCACAATGACAGATAAATG+AGG | - | chr4.2:91918950-91918969 | None:intergenic | 30.0% | |
TTCAGATTTGCAGGAAAAAT+GGG | + | chr4.2:91919245-91919264 | MS.gene053156:intron | 30.0% | |
TTGCAACATACATGAAATGA+AGG | + | chr4.2:91919415-91919434 | MS.gene053156:intron | 30.0% | |
TTGCTCCATACAATTATTAC+GGG | + | chr4.2:91918832-91918851 | MS.gene053156:intron | 30.0% | |
TTTCAACTCATATCAGTTGT+AGG | + | chr4.2:91918652-91918671 | MS.gene053156:intron | 30.0% | |
TTTCAGATTTGCAGGAAAAA+TGG | + | chr4.2:91919244-91919263 | MS.gene053156:intron | 30.0% | |
TTTGAATTCAAAGGTTTCTG+GGG | - | chr4.2:91920295-91920314 | None:intergenic | 30.0% | |
! | AAGCAATTTGGGAATGATTT+TGG | + | chr4.2:91919446-91919465 | MS.gene053156:intron | 30.0% |
! | ATATTGATCCAATTCGGTTT+TGG | + | chr4.2:91918879-91918898 | MS.gene053156:intron | 30.0% |
! | CCCCTTATTTATAATTGTGT+TGG | + | chr4.2:91919727-91919746 | MS.gene053156:intron | 30.0% |
! | TTGGATTCCTACTACTATTT+TGG | - | chr4.2:91920001-91920020 | None:intergenic | 30.0% |
!! | TTACACATTATCTTGCTGTT+GGG | - | chr4.2:91918449-91918468 | None:intergenic | 30.0% |
!! | TTACGGGTTAATCATGATTT+TGG | + | chr4.2:91918848-91918867 | MS.gene053156:intron | 30.0% |
!!! | CGTGTACTCTCAATATTTTT+TGG | + | chr4.2:91919603-91919622 | MS.gene053156:intron | 30.0% |
!!! | GACTGGTTTATTTTTGAACA+AGG | + | chr4.2:91918472-91918491 | MS.gene053156:intron | 30.0% |
AACTTACTCATGAGTCATGA+TGG | + | chr4.2:91919525-91919544 | MS.gene053156:intron | 35.0% | |
AGATAAATGAGGGGAAAAAG+TGG | - | chr4.2:91918939-91918958 | None:intergenic | 35.0% | |
CAACTTCTGCATATAACCTT+AGG | - | chr4.2:91919296-91919315 | None:intergenic | 35.0% | |
CACAATGACAGATAAATGAG+GGG | - | chr4.2:91918948-91918967 | None:intergenic | 35.0% | |
CCGAATTGGATCAATATTAC+AGG | - | chr4.2:91918876-91918895 | None:intergenic | 35.0% | |
GAGGAATCCAAAATAGTAGT+AGG | + | chr4.2:91919991-91920010 | MS.gene053156:intron | 35.0% | |
TGAAACATAAGCCCAATCAA+TGG | - | chr4.2:91919216-91919235 | None:intergenic | 35.0% | |
TGTGGGCAAATAAGGTAAAT+GGG | + | chr4.2:91918760-91918779 | MS.gene053156:intron | 35.0% | |
TTGCAATCACCATCAACATT+GGG | - | chr4.2:91919401-91919420 | None:intergenic | 35.0% | |
TTGGCATAAACTTATGTTGG+CGG | - | chr4.2:91919771-91919790 | None:intergenic | 35.0% | |
! | AATGTTCTGATTAGGTTGTG+GGG | + | chr4.2:91919886-91919905 | MS.gene053156:intron | 35.0% |
! | ATCTAAAGCTTACACTGACT+TGG | - | chr4.2:91919639-91919658 | None:intergenic | 35.0% |
! | CTTACACATTATCTTGCTGT+TGG | - | chr4.2:91918450-91918469 | None:intergenic | 35.0% |
! | GAATGTTCTGATTAGGTTGT+GGG | + | chr4.2:91919885-91919904 | MS.gene053156:intron | 35.0% |
! | TCAAGTTTTCCAAGATTTGC+TGG | - | chr4.2:91920254-91920273 | None:intergenic | 35.0% |
! | TGAATGTTCTGATTAGGTTG+TGG | + | chr4.2:91919884-91919903 | MS.gene053156:intron | 35.0% |
! | TGTCTTCTTTTCAGATTTGC+AGG | + | chr4.2:91919236-91919255 | MS.gene053156:intron | 35.0% |
AATCTGCTCTTGCATTTCCT+TGG | + | chr4.2:91920186-91920205 | MS.gene053156:CDS | 40.0% | |
AATGCAAGAGCAGATTCACT+AGG | - | chr4.2:91920182-91920201 | None:intergenic | 40.0% | |
AATGGGAGTTAGTAGAAGAC+TGG | + | chr4.2:91919262-91919281 | MS.gene053156:intron | 40.0% | |
ACAACGAAGGAGAAGATGAA+TGG | - | chr4.2:91919070-91919089 | None:intergenic | 40.0% | |
ACAATTCCACCCAATGTTGA+TGG | + | chr4.2:91919389-91919408 | MS.gene053156:intron | 40.0% | |
AGAGGAAGAAGAAGAATGTC+AGG | - | chr4.2:91919033-91919052 | None:intergenic | 40.0% | |
ATGAATTGCGGAACAAGTGA+AGG | + | chr4.2:91918400-91918419 | MS.gene053156:CDS | 40.0% | |
ATGGGAGTTAGTAGAAGACT+GGG | + | chr4.2:91919263-91919282 | MS.gene053156:intron | 40.0% | |
CTGTGGGCAAATAAGGTAAA+TGG | + | chr4.2:91918759-91918778 | MS.gene053156:intron | 40.0% | |
CTTCTTCTTCCTCTTGGTTT+AGG | + | chr4.2:91919039-91919058 | MS.gene053156:intron | 40.0% | |
GACATTCTTCTTCTTCCTCT+TGG | + | chr4.2:91919033-91919052 | MS.gene053156:intron | 40.0% | |
GAGACAAGAAGAAACAACGA+AGG | - | chr4.2:91919083-91919102 | None:intergenic | 40.0% | |
GTTGCAATCACCATCAACAT+TGG | - | chr4.2:91919402-91919421 | None:intergenic | 40.0% | |
TATACGGACCAAAACCGAAT+TGG | - | chr4.2:91918890-91918909 | None:intergenic | 40.0% | |
TGGACTTGGCAGATGTAAAT+CGG | - | chr4.2:91918354-91918373 | None:intergenic | 40.0% | |
TTCTGTTCGTAGCCATTGAT+TGG | + | chr4.2:91919201-91919220 | MS.gene053156:intron | 40.0% | |
! | TCTGTTCGTAGCCATTGATT+GGG | + | chr4.2:91919202-91919221 | MS.gene053156:intron | 40.0% |
!! | GTTAAAGTGGCGTACTGATT+CGG | + | chr4.2:91918973-91918992 | MS.gene053156:intron | 40.0% |
!! | TGATGGCTTTGATGATGTCT+TGG | + | chr4.2:91919542-91919561 | MS.gene053156:intron | 40.0% |
AGACTCATCATGGTTGGACT+TGG | - | chr4.2:91918368-91918387 | None:intergenic | 45.0% | |
ATGGTCGAACCTAAACCAAG+AGG | - | chr4.2:91919051-91919070 | None:intergenic | 45.0% | |
CAACCATGATGAGTCTGCAT+CGG | + | chr4.2:91918372-91918391 | MS.gene053156:CDS | 45.0% | |
CAATCACCATCAACATTGGG+TGG | - | chr4.2:91919398-91919417 | None:intergenic | 45.0% | |
CAATGCTTGTGGACTTCTGT+GGG | + | chr4.2:91918743-91918762 | MS.gene053156:CDS | 45.0% | |
CGGAACAAGTGAAGGTTTGA+TGG | + | chr4.2:91918408-91918427 | MS.gene053156:CDS | 45.0% | |
GGAAGAAGAAGAATGTCAGG+TGG | - | chr4.2:91919030-91919049 | None:intergenic | 45.0% | |
TGGACTTCTGTGGGCAAATA+AGG | + | chr4.2:91918752-91918771 | MS.gene053156:CDS | 45.0% | |
! | AAGTCCACAAGCATTGCAGA+GGG | - | chr4.2:91918739-91918758 | None:intergenic | 45.0% |
! | GGTTTGATGGCAGACAATGA+TGG | + | chr4.2:91918421-91918440 | MS.gene053156:CDS | 45.0% |
!! | GCATCGGCTGAAATGAATTG+CGG | + | chr4.2:91918388-91918407 | MS.gene053156:CDS | 45.0% |
!!! | AATAGTTTTTAAAAAAAAAA+TGG | + | chr4.2:91919359-91919378 | MS.gene053156:intron | 5.0% |
!!! | ATAATTTCTATTAAATTTTT+TGG | - | chr4.2:91920050-91920069 | None:intergenic | 5.0% |
!!! | TAATTTCTATTAAATTTTTT+GGG | - | chr4.2:91920049-91920068 | None:intergenic | 5.0% |
!!! | TCTAAATTTTTTATTTTATA+CGG | - | chr4.2:91918906-91918925 | None:intergenic | 5.0% |
AAGACTGGGCGTACAACCTA+AGG | + | chr4.2:91919277-91919296 | MS.gene053156:intron | 50.0% | |
AGAACCCTCTGCAATGCTTG+TGG | + | chr4.2:91918732-91918751 | MS.gene053156:CDS | 50.0% | |
CAAGAGCGAGGCTAAAACGA+GGG | - | chr4.2:91920226-91920245 | None:intergenic | 50.0% | |
CGATGCAGACTCATCATGGT+TGG | - | chr4.2:91918374-91918393 | None:intergenic | 50.0% | |
CTAGGCAAGCAGATTTCGCT+AGG | - | chr4.2:91920164-91920183 | None:intergenic | 50.0% | |
CTTGCTCGTCCAGCAAATCT+TGG | + | chr4.2:91920242-91920261 | MS.gene053156:CDS | 50.0% | |
GCAATGCTTGTGGACTTCTG+TGG | + | chr4.2:91918742-91918761 | MS.gene053156:CDS | 50.0% | |
! | AGAAGTGCACGCCAATGATG+CGG | + | chr4.2:91918691-91918710 | MS.gene053156:CDS | 50.0% |
! | CAAGCATTGCAGAGGGTTCT+TGG | - | chr4.2:91918732-91918751 | None:intergenic | 50.0% |
! | GAAGTCCACAAGCATTGCAG+AGG | - | chr4.2:91918740-91918759 | None:intergenic | 50.0% |
! | GGGACTCTAGAGAAGTTCCA+AGG | - | chr4.2:91920206-91920225 | None:intergenic | 50.0% |
CAGCCGATGCAGACTCATCA+TGG | - | chr4.2:91918378-91918397 | None:intergenic | 55.0% | |
GCAAGAGCGAGGCTAAAACG+AGG | - | chr4.2:91920227-91920246 | None:intergenic | 55.0% | |
ATGATGCGGCGTGGACCTGA+AGG | + | chr4.2:91918705-91918724 | MS.gene053156:CDS | 60.0% | |
CAGAGGGTTCTTGGCCCTTC+AGG | - | chr4.2:91918723-91918742 | None:intergenic | 60.0% | |
TCAGGTCCACGCCGCATCAT+TGG | - | chr4.2:91918705-91918724 | None:intergenic | 60.0% | |
TGATGCGGCGTGGACCTGAA+GGG | + | chr4.2:91918706-91918725 | MS.gene053156:CDS | 60.0% | |
TTGCTGGACGAGCAAGAGCG+AGG | - | chr4.2:91920238-91920257 | None:intergenic | 60.0% | |
TGCACGCCAATGATGCGGCG+TGG | + | chr4.2:91918696-91918715 | MS.gene053156:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 91918334 | 91920344 | 91918334 | ID=MS.gene053156 |
chr4.2 | mRNA | 91918334 | 91920344 | 91918334 | ID=MS.gene053156.t1;Parent=MS.gene053156 |
chr4.2 | exon | 91918334 | 91918464 | 91918334 | ID=MS.gene053156.t1.exon1;Parent=MS.gene053156.t1 |
chr4.2 | CDS | 91918334 | 91918464 | 91918334 | ID=cds.MS.gene053156.t1;Parent=MS.gene053156.t1 |
chr4.2 | exon | 91918668 | 91918773 | 91918668 | ID=MS.gene053156.t1.exon2;Parent=MS.gene053156.t1 |
chr4.2 | CDS | 91918668 | 91918773 | 91918668 | ID=cds.MS.gene053156.t1;Parent=MS.gene053156.t1 |
chr4.2 | exon | 91920156 | 91920344 | 91920156 | ID=MS.gene053156.t1.exon3;Parent=MS.gene053156.t1 |
chr4.2 | CDS | 91920156 | 91920344 | 91920156 | ID=cds.MS.gene053156.t1;Parent=MS.gene053156.t1 |
Gene Sequence |
Protein sequence |