AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053397

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053397.t1 MTR_1g043080 89.130 276 8 3 1 275 1 255 1.20e-176 487
MS.gene053397.t1 MTR_1g043050 81.455 275 30 3 1 275 1 254 2.34e-162 451
MS.gene053397.t1 MTR_1g076150 63.441 279 77 5 1 275 1 258 9.83e-113 325
MS.gene053397.t1 MTR_7g096930 47.138 297 116 8 1 275 1 278 9.11e-79 239
MS.gene053397.t1 MTR_7g115650 52.451 204 88 4 1 198 1 201 1.51e-66 206
MS.gene053397.t1 MTR_1g100653 55.556 180 64 2 1 164 1 180 1.80e-65 206
MS.gene053397.t1 MTR_4g478180 74.359 117 30 0 1 117 2 118 6.07e-62 199
MS.gene053397.t1 MTR_2g011660 74.576 118 29 1 1 117 1 118 8.65e-62 198
MS.gene053397.t1 MTR_2g089620 74.359 117 30 0 1 117 1 117 1.46e-61 197
MS.gene053397.t1 MTR_4g091490 73.729 118 30 1 1 117 1 118 4.71e-61 197
MS.gene053397.t1 MTR_7g076740 73.504 117 30 1 1 116 1 117 8.16e-61 195
MS.gene053397.t1 MTR_7g011170 73.276 116 31 0 1 116 1 116 1.07e-59 192
MS.gene053397.t1 MTR_3g074520 70.940 117 34 0 1 117 1 117 1.56e-59 192
MS.gene053397.t1 MTR_4g082290 74.138 116 30 0 1 116 1 116 2.20e-59 194
MS.gene053397.t1 MTR_2g089450 63.889 144 43 2 1 144 1 135 4.91e-59 188
MS.gene053397.t1 MTR_6g012690 72.414 116 32 0 1 116 1 116 6.30e-59 191
MS.gene053397.t1 MTR_0063s0090 46.087 230 104 4 1 220 1 220 1.41e-58 186
MS.gene053397.t1 MTR_2g034790 45.217 230 108 6 1 217 1 225 1.66e-58 189
MS.gene053397.t1 MTR_4g121460 69.828 116 35 0 1 116 1 116 3.11e-58 189
MS.gene053397.t1 MTR_7g117730 67.797 118 38 0 1 118 1 118 4.34e-58 186
MS.gene053397.t1 MTR_8g027345 67.241 116 38 0 1 116 1 116 6.59e-58 187
MS.gene053397.t1 MTR_8g031360 69.748 119 34 2 1 117 1 119 7.51e-58 187
MS.gene053397.t1 MTR_4g073420 68.644 118 37 0 1 118 1 118 1.77e-57 186
MS.gene053397.t1 MTR_3g083540 51.875 160 77 0 5 164 34 193 5.80e-57 185
MS.gene053397.t1 MTR_0251s0050 68.376 117 36 1 1 116 1 117 6.78e-57 184
MS.gene053397.t1 MTR_4g082230 72.414 116 32 0 1 116 1 116 7.44e-57 187
MS.gene053397.t1 MTR_0008s0390 62.143 140 50 3 1 137 1 140 1.08e-56 183
MS.gene053397.t1 MTR_5g029840 69.231 117 36 0 1 117 1 117 1.38e-56 185
MS.gene053397.t1 MTR_4g125520 48.454 194 86 4 1 191 1 183 6.21e-56 182
MS.gene053397.t1 MTR_5g007370 68.376 117 37 0 1 117 1 117 7.83e-56 182
MS.gene053397.t1 MTR_2g067420 70.642 109 32 0 3 111 5 113 1.24e-55 182
MS.gene053397.t1 MTR_0008s0470 59.712 139 53 2 1 138 1 137 4.75e-55 179
MS.gene053397.t1 MTR_3g097450 55.128 156 58 1 1 156 1 144 6.05e-55 179
MS.gene053397.t1 MTR_3g039990 65.000 120 42 0 1 120 2 121 2.57e-54 178
MS.gene053397.t1 MTR_2g089420 45.148 237 102 8 1 228 1 218 9.33e-54 181
MS.gene053397.t1 MTR_7g010210 58.741 143 55 2 1 139 1 143 1.15e-53 177
MS.gene053397.t1 MTR_1g085040 53.631 179 72 4 1 168 1 179 1.17e-53 178
MS.gene053397.t1 MTR_7g010210 65.517 116 40 0 1 116 1 116 1.97e-53 175
MS.gene053397.t1 MTR_0140s0030 63.793 116 42 0 1 116 2 117 5.16e-53 176
MS.gene053397.t1 MTR_0489s0020 63.793 116 42 0 1 116 2 117 5.16e-53 176
MS.gene053397.t1 MTR_8g095390 65.517 116 40 0 1 116 1 116 7.03e-53 174
MS.gene053397.t1 MTR_3g461490 65.517 116 40 0 1 116 1 116 1.16e-52 174
MS.gene053397.t1 MTR_7g109320 71.552 116 33 0 1 116 1 116 1.20e-52 175
MS.gene053397.t1 MTR_6g012180 66.667 111 37 0 1 111 1 111 1.51e-52 174
MS.gene053397.t1 MTR_3g065440 66.379 116 39 0 1 116 1 116 2.50e-52 173
MS.gene053397.t1 MTR_5g078140 66.379 116 39 0 1 116 1 116 2.97e-52 173
MS.gene053397.t1 MTR_1g085640 48.421 190 73 3 1 165 1 190 4.15e-52 175
MS.gene053397.t1 MTR_1g017000 38.577 267 134 8 1 261 1 243 9.73e-52 170
MS.gene053397.t1 MTR_7g110830 53.846 156 68 1 1 152 1 156 1.13e-51 173
MS.gene053397.t1 MTR_7g111290 46.829 205 95 5 1 200 1 196 1.74e-51 173
MS.gene053397.t1 MTR_4g102380 63.248 117 43 0 1 117 1 117 1.91e-51 169
MS.gene053397.t1 MTR_1g017140 52.288 153 72 1 1 152 1 153 2.35e-51 171
MS.gene053397.t1 MTR_0008s0280 62.281 114 43 0 1 114 1 114 2.50e-51 168
MS.gene053397.t1 MTR_7g087130 65.517 116 40 0 1 116 1 116 7.70e-51 170
MS.gene053397.t1 MTR_5g014990 57.746 142 54 3 1 139 1 139 1.11e-50 169
MS.gene053397.t1 MTR_5g079670 57.759 116 49 0 2 117 1 116 8.33e-50 164
MS.gene053397.t1 MTR_4g105130 53.247 154 65 2 1 154 1 147 1.61e-49 167
MS.gene053397.t1 MTR_4g057635 61.017 118 45 1 1 117 1 118 3.14e-48 163
MS.gene053397.t1 MTR_4g485530 61.538 117 44 1 2 117 1 117 4.92e-48 158
MS.gene053397.t1 MTR_3g077110 62.393 117 44 0 1 117 1 117 1.04e-47 162
MS.gene053397.t1 MTR_2g064160 59.821 112 45 0 6 117 5 116 1.37e-47 161
MS.gene053397.t1 MTR_5g042030 66.355 107 36 0 11 117 6 112 1.42e-47 160
MS.gene053397.t1 MTR_7g102110 57.377 122 51 1 1 121 1 122 2.39e-47 159
MS.gene053397.t1 MTR_3g103570 52.632 133 62 1 1 132 1 133 3.06e-47 161
MS.gene053397.t1 MTR_1g112760 60.870 115 45 0 3 117 4 118 4.52e-47 157
MS.gene053397.t1 MTR_6g009430 57.265 117 50 0 1 117 1 117 1.06e-46 159
MS.gene053397.t1 MTR_6g090405 51.007 149 68 2 1 148 1 145 1.16e-46 157
MS.gene053397.t1 MTR_1g076150 52.308 195 68 5 85 275 33 206 1.26e-46 155
MS.gene053397.t1 MTR_4g065017 49.162 179 78 4 12 181 17 191 1.48e-46 159
MS.gene053397.t1 MTR_2g099740 58.974 117 48 0 1 117 1 117 2.51e-46 160
MS.gene053397.t1 MTR_2g095520 62.162 111 41 1 1 110 1 111 3.39e-46 157
MS.gene053397.t1 MTR_4g097570 54.110 146 65 2 1 144 1 146 4.40e-46 156
MS.gene053397.t1 MTR_8g017540 57.265 117 50 0 1 117 47 163 1.55e-45 157
MS.gene053397.t1 MTR_8g017440 56.897 116 50 0 1 116 1 116 3.08e-45 155
MS.gene053397.t1 MTR_8g098860 56.034 116 51 0 1 116 1 116 1.31e-44 153
MS.gene053397.t1 MTR_4g097570 53.741 147 65 3 1 144 1 147 1.80e-44 152
MS.gene053397.t1 MTR_8g017500 56.034 116 51 0 1 116 1 116 3.06e-44 153
MS.gene053397.t1 MTR_1g100667 64.423 104 37 0 13 116 14 117 4.37e-44 150
MS.gene053397.t1 MTR_4g128670 61.261 111 42 1 1 110 1 111 4.85e-44 152
MS.gene053397.t1 MTR_2g097910 63.551 107 39 0 12 118 20 126 5.51e-44 152
MS.gene053397.t1 MTR_8g020490 58.621 116 44 1 1 116 1 112 1.37e-43 149
MS.gene053397.t1 MTR_1g110460 60.185 108 43 0 8 115 22 129 1.51e-43 150
MS.gene053397.t1 MTR_6g055910 58.929 112 46 0 4 115 6 117 1.81e-43 149
MS.gene053397.t1 MTR_7g035075 58.036 112 47 0 12 123 14 125 1.94e-43 147
MS.gene053397.t1 MTR_3g052450 47.682 151 70 2 8 152 36 183 2.02e-43 155
MS.gene053397.t1 MTR_3g052430 48.299 147 70 1 12 152 41 187 5.17e-43 154
MS.gene053397.t1 MTR_8g017340 57.627 118 49 1 1 117 1 118 6.27e-43 153
MS.gene053397.t1 MTR_5g010020 53.906 128 59 0 1 128 1 128 7.92e-43 149
MS.gene053397.t1 MTR_5g079220 53.571 112 52 0 7 118 16 127 8.70e-43 147
MS.gene053397.t1 MTR_3g028740 63.889 108 39 0 9 116 19 126 1.54e-42 149
MS.gene053397.t1 MTR_0197s0010 44.643 168 87 3 16 183 5 166 1.86e-42 145
MS.gene053397.t1 MTR_4g100720 58.879 107 44 0 9 115 10 116 2.04e-42 143
MS.gene053397.t1 MTR_3g011610 60.577 104 41 0 12 115 37 140 2.26e-42 152
MS.gene053397.t1 MTR_8g042410 60.577 104 41 0 12 115 37 140 2.41e-42 152
MS.gene053397.t1 MTR_8g017390 54.098 122 55 1 1 121 1 122 2.55e-42 151
MS.gene053397.t1 MTR_6g006030 50.370 135 63 2 1 133 1 133 3.64e-42 144
MS.gene053397.t1 MTR_5g079290 54.128 109 50 0 10 118 15 123 3.96e-42 145
MS.gene053397.t1 MTR_5g079120 55.963 109 48 0 9 117 58 166 6.87e-42 146
MS.gene053397.t1 MTR_8g017350 56.780 118 50 1 1 117 1 118 9.45e-42 152
MS.gene053397.t1 MTR_7g017260 45.732 164 80 3 11 170 24 182 1.87e-41 144
MS.gene053397.t1 MTR_5g078800 56.481 108 47 0 10 117 5 112 3.52e-41 143
MS.gene053397.t1 MTR_2g088170 61.682 107 41 0 9 115 26 132 4.68e-41 147
MS.gene053397.t1 MTR_5g078910 54.630 108 49 0 10 117 5 112 6.58e-41 143
MS.gene053397.t1 MTR_1g086510 59.048 105 43 0 11 115 20 124 7.83e-41 142
MS.gene053397.t1 MTR_1g073170 57.282 103 44 0 13 115 21 123 1.10e-40 141
MS.gene053397.t1 MTR_1g021230 58.654 104 43 0 12 115 57 160 1.72e-40 145
MS.gene053397.t1 MTR_5g078950 32.800 250 148 3 10 239 5 254 2.64e-40 140
MS.gene053397.t1 MTR_1g045610 53.982 113 52 0 6 118 15 127 3.04e-40 140
MS.gene053397.t1 MTR_0001s0360 53.704 108 50 0 10 117 5 112 5.29e-40 139
MS.gene053397.t1 MTR_0247s0040 57.282 103 44 0 11 113 6 108 1.51e-39 136
MS.gene053397.t1 MTR_8g060940 56.863 102 44 0 11 112 6 107 1.52e-39 138
MS.gene053397.t1 MTR_5g078860 52.727 110 52 0 8 117 3 112 2.39e-39 139
MS.gene053397.t1 MTR_1g062940 57.143 105 45 0 12 116 6 110 2.43e-39 137
MS.gene053397.t1 MTR_0193s0090 50.000 124 57 1 11 129 6 129 9.53e-39 135
MS.gene053397.t1 MTR_1g086530 54.808 104 47 0 12 115 33 136 1.53e-38 136
MS.gene053397.t1 MTR_5g078930 47.143 140 59 1 13 152 10 134 2.43e-37 132
MS.gene053397.t1 MTR_4g063100 54.369 103 47 0 13 115 8 110 4.95e-37 132
MS.gene053397.t1 MTR_2g033170 57.282 103 44 0 12 114 24 126 5.51e-36 131
MS.gene053397.t1 MTR_2g096380 45.455 143 68 1 12 154 6 138 1.02e-35 128
MS.gene053397.t1 MTR_5g062790 53.398 103 47 1 13 114 10 112 6.78e-35 127
MS.gene053397.t1 MTR_5g088080 53.398 103 47 1 13 114 13 115 7.33e-35 126
MS.gene053397.t1 MTR_5g088150 53.398 103 47 1 13 114 13 115 7.33e-35 126
MS.gene053397.t1 MTR_5g488210 53.398 103 47 1 13 114 13 115 7.33e-35 126
MS.gene053397.t1 MTR_5g088640 53.398 103 47 1 13 114 13 115 8.86e-35 126
MS.gene053397.t1 MTR_1g083630 52.885 104 49 0 12 115 12 115 9.31e-35 132
MS.gene053397.t1 MTR_4g123040 56.311 103 45 0 12 114 24 126 1.15e-34 127
MS.gene053397.t1 MTR_5g488170 53.398 103 47 1 13 114 13 115 1.45e-34 125
MS.gene053397.t1 MTR_5g007300 63.636 88 32 0 1 88 53 140 2.49e-34 121
MS.gene053397.t1 MTR_7g111290 44.444 162 76 5 44 200 2 154 1.42e-32 122
MS.gene053397.t1 MTR_3g045430 47.009 117 61 1 1 116 1 117 1.79e-32 121
MS.gene053397.t1 MTR_4g029540 43.077 130 72 2 8 136 6 134 8.03e-32 119
MS.gene053397.t1 MTR_8g006470 46.018 113 58 2 8 117 6 118 2.85e-31 117
MS.gene053397.t1 MTR_5g088610 50.485 103 50 1 13 114 10 112 8.12e-31 118
MS.gene053397.t1 MTR_3g101290 51.961 102 48 1 14 115 37 137 1.56e-30 114
MS.gene053397.t1 MTR_6g055910 66.197 71 24 0 45 115 18 88 6.82e-30 113
MS.gene053397.t1 MTR_4g063100 62.500 72 27 0 44 115 10 81 1.67e-28 108
MS.gene053397.t1 MTR_4g019370 43.939 132 67 3 14 140 38 167 1.69e-28 111
MS.gene053397.t1 MTR_5g049190 46.281 121 60 3 9 128 14 130 1.74e-28 109
MS.gene053397.t1 MTR_4g128190 42.857 133 51 4 10 130 9 128 2.42e-28 108
MS.gene053397.t1 MTR_5g016510 50.000 102 50 1 14 115 5 105 6.38e-28 109
MS.gene053397.t1 MTR_4g094982 49.057 106 45 2 14 115 5 105 1.21e-27 107
MS.gene053397.t1 MTR_6g015455 51.456 103 47 2 14 115 5 105 6.76e-27 110
MS.gene053397.t1 MTR_5g070020 33.953 215 102 8 12 215 120 305 1.13e-26 107
MS.gene053397.t1 MTR_2g096380 47.748 111 48 1 44 154 19 119 1.26e-26 103
MS.gene053397.t1 MTR_1g085880 50.467 107 51 2 10 114 9 115 4.96e-26 101
MS.gene053397.t1 MTR_1g057980 35.714 196 114 5 12 200 78 268 7.02e-26 103
MS.gene053397.t1 MTR_3g077650 38.411 151 73 3 3 151 168 300 1.26e-25 105
MS.gene053397.t1 MTR_1g085770 50.467 107 51 2 10 114 9 115 2.24e-25 102
MS.gene053397.t1 MTR_7g061330 42.069 145 79 3 12 152 111 254 3.68e-25 104
MS.gene053397.t1 MTR_7g061330 33.000 100 65 2 14 112 61 159 1.08e-11 65.1
MS.gene053397.t1 MTR_7g461410 42.069 145 79 3 12 152 111 254 3.68e-25 104
MS.gene053397.t1 MTR_7g461410 33.000 100 65 2 14 112 61 159 1.08e-11 65.1
MS.gene053397.t1 MTR_3g110028 39.416 137 66 2 12 132 83 218 4.01e-25 105
MS.gene053397.t1 MTR_3g110028 37.000 100 61 2 14 112 33 131 1.05e-13 71.2
MS.gene053397.t1 MTR_7g061330 42.069 145 79 3 12 152 75 218 4.76e-25 104
MS.gene053397.t1 MTR_7g061330 33.000 100 65 2 14 112 25 123 1.19e-11 65.1
MS.gene053397.t1 MTR_1g026870 43.810 105 58 1 12 116 83 186 1.11e-24 103
MS.gene053397.t1 MTR_1g026870 35.000 100 63 2 14 112 33 131 1.06e-12 68.6
MS.gene053397.t1 MTR_7g037260 31.169 231 122 6 14 236 145 346 3.72e-24 100
MS.gene053397.t1 MTR_4g082040 37.500 136 78 3 14 148 105 234 4.86e-24 100
MS.gene053397.t1 MTR_6g074860 46.535 101 53 1 14 114 4 103 5.22e-24 97.4
MS.gene053397.t1 MTR_4g105660 36.424 151 75 4 3 151 168 299 1.28e-23 99.4
MS.gene053397.t1 MTR_5g041570 39.098 133 74 3 14 145 134 260 2.00e-23 99.0
MS.gene053397.t1 MTR_3g463400 41.667 120 67 2 12 130 131 248 5.37e-23 97.8
MS.gene053397.t1 MTR_7g451170 31.217 189 101 4 14 191 191 361 7.25e-23 97.4
MS.gene053397.t1 MTR_0023s0210 51.282 78 38 0 11 88 6 83 8.26e-23 89.7
MS.gene053397.t1 MTR_7g035350 45.631 103 53 2 17 119 228 327 1.59e-22 96.7
MS.gene053397.t1 MTR_4g088015 37.984 129 78 2 14 142 221 347 3.22e-22 95.5
MS.gene053397.t1 MTR_6g027340 42.157 102 58 1 14 115 16 116 1.15e-20 87.8
MS.gene053397.t1 MTR_3g089045 43.119 109 59 2 8 115 10 116 2.62e-20 88.6
MS.gene053397.t1 MTR_7g450950 34.532 139 85 3 14 152 157 289 2.74e-20 89.4
MS.gene053397.t1 MTR_7g086960 44.660 103 54 2 14 115 89 189 4.06e-20 89.0
MS.gene053397.t1 MTR_6g027360 42.857 105 57 2 12 115 76 178 4.16e-20 88.2
MS.gene053397.t1 MTR_5g082910 43.434 99 55 1 14 112 19 116 4.22e-20 87.8
MS.gene053397.t1 MTR_7g037130 28.571 231 128 6 14 236 145 346 7.64e-20 88.2
MS.gene053397.t1 MTR_5g038910 29.046 241 156 6 17 245 29 266 2.69e-19 87.0
MS.gene053397.t1 MTR_6g027370 42.308 104 55 2 14 115 99 199 4.01e-19 86.3
MS.gene053397.t1 MTR_5g038910 29.046 241 156 6 17 245 29 266 4.23e-19 87.0
MS.gene053397.t1 MTR_5g010650 45.361 97 52 1 12 108 108 203 6.63e-19 86.3
MS.gene053397.t1 MTR_7g061550 36.111 108 67 1 17 122 10 117 6.43e-18 82.8
MS.gene053397.t1 MTR_8g468380 35.036 137 79 3 17 153 25 151 6.61e-17 80.5
MS.gene053397.t1 MTR_6g055910 60.870 46 18 0 70 115 2 47 3.40e-14 70.1
MS.gene053397.t1 MTR_1g008970 36.220 127 66 2 48 174 124 235 3.16e-13 68.2
MS.gene053397.t1 MTR_4g063100 60.465 43 17 0 73 115 4 46 1.63e-12 65.1
MS.gene053397.t1 MTR_2g096380 43.210 81 36 1 74 154 5 75 8.73e-12 62.8
MS.gene053397.t1 MTR_8g017480 53.191 47 22 0 6 52 6 52 2.28e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053397.t1 AT3G23250 50.704 284 125 5 1 272 1 281 1.25e-84 255
MS.gene053397.t1 AT2G31180 48.561 278 111 6 1 275 1 249 1.01e-74 228
MS.gene053397.t1 AT1G06180 46.831 284 104 7 1 275 1 246 7.73e-72 221
MS.gene053397.t1 AT1G16490 49.554 224 100 5 3 224 5 217 1.73e-65 206
MS.gene053397.t1 AT4G21440 75.214 117 29 0 1 117 1 117 2.66e-64 205
MS.gene053397.t1 AT1G79180 58.480 171 61 4 3 170 5 168 1.27e-62 199
MS.gene053397.t1 AT4G05100 75.424 118 28 1 1 117 1 118 1.82e-62 199
MS.gene053397.t1 AT3G61250 72.034 118 33 0 1 118 1 118 2.81e-62 198
MS.gene053397.t1 AT4G28110 70.588 119 35 0 1 119 1 119 4.58e-61 195
MS.gene053397.t1 AT5G16770 71.795 117 33 0 1 117 1 117 6.72e-61 196
MS.gene053397.t1 AT5G16770 71.795 117 33 0 1 117 1 117 6.72e-61 196
MS.gene053397.t1 AT5G16770 71.795 117 33 0 1 117 1 117 1.48e-60 195
MS.gene053397.t1 AT5G16770 71.795 117 33 0 1 117 1 117 1.48e-60 195
MS.gene053397.t1 AT3G02940 70.085 117 35 0 1 117 1 117 6.34e-60 192
MS.gene053397.t1 AT1G56160 71.930 114 32 0 3 116 5 118 1.21e-59 191
MS.gene053397.t1 AT3G02940 70.085 117 35 0 1 117 1 117 1.51e-59 192
MS.gene053397.t1 AT3G02940 70.085 117 35 0 1 117 1 117 1.51e-59 192
MS.gene053397.t1 AT3G01140 70.940 117 34 0 1 117 1 117 5.41e-59 191
MS.gene053397.t1 AT5G15310 70.940 117 34 0 1 117 1 117 1.93e-58 189
MS.gene053397.t1 AT1G35515 47.291 203 86 4 1 197 1 188 2.42e-58 185
MS.gene053397.t1 AT5G15310 70.940 117 34 0 1 117 1 117 2.61e-58 189
MS.gene053397.t1 AT5G15310 70.940 117 34 0 1 117 1 117 3.20e-58 186
MS.gene053397.t1 AT2G16720 68.644 118 37 0 1 118 1 118 3.52e-58 187
MS.gene053397.t1 AT3G01140 70.085 117 35 0 1 117 44 160 4.73e-58 190
MS.gene053397.t1 AT1G34670 70.940 117 34 0 1 117 1 117 8.33e-58 189
MS.gene053397.t1 AT3G12820 46.759 216 109 3 3 212 5 220 1.09e-57 184
MS.gene053397.t1 AT5G10280 69.231 117 36 0 1 117 1 117 2.32e-57 187
MS.gene053397.t1 AT4G38620 67.797 118 38 0 1 118 1 118 3.11e-57 185
MS.gene053397.t1 AT1G22640 63.780 127 45 1 1 127 1 126 7.14e-57 183
MS.gene053397.t1 AT3G13540 65.789 114 39 0 4 117 15 128 1.25e-56 182
MS.gene053397.t1 AT5G65230 70.085 117 35 0 1 117 1 117 1.63e-56 184
MS.gene053397.t1 AT4G09460 66.667 117 39 0 1 117 1 117 2.00e-56 181
MS.gene053397.t1 AT4G17785 66.949 118 38 1 1 117 1 118 5.55e-56 184
MS.gene053397.t1 AT4G17785 66.949 118 38 1 1 117 1 118 6.27e-56 184
MS.gene053397.t1 AT1G79180 49.020 204 61 5 3 170 5 201 8.73e-56 182
MS.gene053397.t1 AT4G22680 44.144 222 112 4 1 218 1 214 7.85e-55 178
MS.gene053397.t1 AT2G47460 66.102 118 40 0 1 118 1 118 1.02e-54 181
MS.gene053397.t1 AT5G16600 49.451 182 86 2 1 176 1 182 1.13e-54 180
MS.gene053397.t1 AT5G60890 66.379 116 39 0 1 116 1 116 1.34e-54 178
MS.gene053397.t1 AT5G62470 65.833 120 41 0 1 120 1 120 1.40e-54 180
MS.gene053397.t1 AT3G28910 63.934 122 44 0 1 122 1 122 2.24e-54 179
MS.gene053397.t1 AT5G61420 67.521 117 38 0 1 117 1 117 2.39e-54 180
MS.gene053397.t1 AT5G07690 66.949 118 39 0 1 118 1 118 3.55e-54 179
MS.gene053397.t1 AT4G12350 40.234 256 133 6 1 242 1 250 4.38e-54 177
MS.gene053397.t1 AT1G18570 66.949 118 38 1 1 117 1 118 6.41e-54 178
MS.gene053397.t1 AT4G34990 66.667 117 39 0 1 117 1 117 6.80e-54 176
MS.gene053397.t1 AT3G62610 66.379 116 39 0 1 116 1 116 1.32e-53 177
MS.gene053397.t1 AT1G57560 56.849 146 62 1 1 146 1 145 2.18e-53 176
MS.gene053397.t1 AT5G62470 65.833 120 40 1 1 120 1 119 3.46e-53 176
MS.gene053397.t1 AT3G47600 63.636 121 44 0 1 121 1 121 3.70e-53 176
MS.gene053397.t1 AT1G74080 64.957 117 41 0 1 117 1 117 6.46e-53 175
MS.gene053397.t1 AT5G49330 38.768 276 120 5 1 228 1 275 1.05e-52 175
MS.gene053397.t1 AT1G74650 65.812 117 40 0 1 117 1 117 1.10e-52 174
MS.gene053397.t1 AT1G66230 53.205 156 68 2 1 152 1 155 2.08e-52 172
MS.gene053397.t1 AT1G57560 64.103 117 42 0 1 117 1 117 3.45e-52 172
MS.gene053397.t1 AT5G07700 65.254 118 41 0 1 118 1 118 5.27e-52 173
MS.gene053397.t1 AT5G07700 65.254 118 41 0 1 118 1 118 5.27e-52 173
MS.gene053397.t1 AT5G54230 72.642 106 29 0 12 117 12 117 6.77e-52 172
MS.gene053397.t1 AT1G08810 64.655 116 41 0 1 116 1 116 9.58e-52 171
MS.gene053397.t1 AT4G01680 65.517 116 40 0 1 116 1 116 1.80e-51 169
MS.gene053397.t1 AT5G56110 65.517 116 40 0 1 116 1 116 3.86e-51 170
MS.gene053397.t1 AT4G01680 65.517 116 40 0 1 116 1 116 5.27e-51 171
MS.gene053397.t1 AT5G26660 64.655 116 41 0 1 116 1 116 6.83e-51 171
MS.gene053397.t1 AT5G14340 45.226 199 102 3 1 195 13 208 8.07e-51 168
MS.gene053397.t1 AT1G09540 50.888 169 77 2 1 163 1 169 6.81e-50 168
MS.gene053397.t1 AT4G37780 59.322 118 47 1 1 117 1 118 2.70e-49 165
MS.gene053397.t1 AT5G62320 52.113 142 58 2 3 137 4 142 4.81e-49 162
MS.gene053397.t1 AT5G57620 62.712 118 43 1 1 117 1 118 7.36e-49 165
MS.gene053397.t1 AT3G13890 59.829 117 47 0 1 117 1 117 1.17e-48 165
MS.gene053397.t1 AT3G49690 62.185 119 44 1 1 118 1 119 3.14e-48 162
MS.gene053397.t1 AT5G23000 42.647 204 107 4 1 199 1 199 1.75e-47 161
MS.gene053397.t1 AT3G12720 60.177 113 45 0 6 118 16 128 1.87e-47 160
MS.gene053397.t1 AT5G65790 61.345 119 45 1 1 118 1 119 2.04e-47 162
MS.gene053397.t1 AT4G01680 59.375 128 40 1 1 116 1 128 2.05e-47 161
MS.gene053397.t1 AT1G18710 61.207 116 45 0 1 116 1 116 2.37e-46 156
MS.gene053397.t1 AT2G36890 49.080 163 82 1 1 162 1 163 2.50e-46 157
MS.gene053397.t1 AT1G74430 56.061 132 54 1 1 128 1 132 4.76e-46 155
MS.gene053397.t1 AT5G35550 62.832 113 42 0 12 124 14 126 4.77e-46 155
MS.gene053397.t1 AT2G36890 49.080 163 82 1 1 162 42 204 5.86e-46 157
MS.gene053397.t1 AT2G32460 61.111 108 42 0 8 115 14 121 9.57e-46 160
MS.gene053397.t1 AT3G13890 55.556 126 47 1 1 117 1 126 1.42e-45 157
MS.gene053397.t1 AT5G14750 60.577 104 41 0 13 116 17 120 1.61e-45 152
MS.gene053397.t1 AT2G32460 61.321 106 41 0 10 115 4 109 2.94e-45 159
MS.gene053397.t1 AT5G40330 59.615 104 42 0 13 116 13 116 6.12e-45 151
MS.gene053397.t1 AT5G06100 60.952 105 41 0 11 115 31 135 6.90e-45 157
MS.gene053397.t1 AT1G63910 57.759 116 49 0 1 116 1 116 7.78e-45 155
MS.gene053397.t1 AT3G28470 60.000 110 44 0 1 110 1 110 8.62e-45 154
MS.gene053397.t1 AT5G06100 60.952 105 41 0 11 115 31 135 2.76e-44 157
MS.gene053397.t1 AT5G06100 60.952 105 41 0 11 115 31 135 2.76e-44 157
MS.gene053397.t1 AT5G06100 60.952 105 41 0 11 115 31 135 2.76e-44 157
MS.gene053397.t1 AT5G06100 60.952 105 41 0 11 115 31 135 2.76e-44 157
MS.gene053397.t1 AT5G40350 39.904 208 101 7 12 215 17 204 3.72e-44 149
MS.gene053397.t1 AT3G11440 57.522 113 44 1 7 115 32 144 3.53e-43 153
MS.gene053397.t1 AT3G27920 55.455 110 49 0 8 117 10 119 4.94e-43 147
MS.gene053397.t1 AT5G12870 59.130 115 47 0 2 116 8 122 6.94e-43 148
MS.gene053397.t1 AT5G55020 60.000 105 42 0 12 116 26 130 7.56e-43 153
MS.gene053397.t1 AT3G23250 43.860 228 111 7 58 272 1 224 1.07e-42 145
MS.gene053397.t1 AT3G11440 57.522 113 44 1 7 115 32 144 1.24e-42 153
MS.gene053397.t1 AT3G11440 57.522 113 44 1 7 115 32 144 1.24e-42 153
MS.gene053397.t1 AT3G11440 57.522 113 44 1 7 115 32 144 1.24e-42 153
MS.gene053397.t1 AT3G01530 44.172 163 87 1 8 166 21 183 1.82e-42 144
MS.gene053397.t1 AT3G27810 59.048 105 43 0 12 116 20 124 2.99e-42 144
MS.gene053397.t1 AT4G25560 62.162 111 42 0 13 123 11 121 3.34e-42 146
MS.gene053397.t1 AT1G68320 42.786 201 109 4 12 206 19 219 6.07e-42 145
MS.gene053397.t1 AT5G52600 51.449 138 61 1 9 140 9 146 7.56e-42 143
MS.gene053397.t1 AT3G08500 61.111 108 42 0 9 116 27 134 9.04e-42 147
MS.gene053397.t1 AT4G13480 51.181 127 56 1 13 139 7 127 1.75e-41 144
MS.gene053397.t1 AT3G30210 53.226 124 51 1 11 134 26 142 3.12e-41 143
MS.gene053397.t1 AT3G24310 52.381 126 58 1 9 134 15 138 4.26e-41 143
MS.gene053397.t1 AT4G26930 57.282 103 44 0 12 114 19 121 5.71e-41 145
MS.gene053397.t1 AT5G52260 58.824 119 49 0 1 119 1 119 6.43e-41 142
MS.gene053397.t1 AT1G25340 58.036 112 45 1 13 122 19 130 7.27e-41 142
MS.gene053397.t1 AT2G26960 56.604 106 46 0 9 114 17 122 9.18e-41 146
MS.gene053397.t1 AT1G48000 47.333 150 73 3 12 155 32 181 9.71e-40 139
MS.gene053397.t1 AT2G47190 42.331 163 81 2 8 157 16 178 1.57e-39 139
MS.gene053397.t1 AT1G66370 36.652 221 114 5 10 217 6 213 3.55e-39 137
MS.gene053397.t1 AT1G66380 58.491 106 44 0 10 115 6 111 5.47e-38 130
MS.gene053397.t1 AT1G56650 58.491 106 44 0 10 115 6 111 1.93e-37 133
MS.gene053397.t1 AT1G66390 58.491 106 44 0 10 115 6 111 3.71e-37 132
MS.gene053397.t1 AT3G48920 54.717 106 48 0 9 114 15 120 3.92e-37 132
MS.gene053397.t1 AT3G46130 51.852 108 52 0 8 115 5 112 1.04e-36 131
MS.gene053397.t1 AT1G25340 55.357 112 43 2 13 122 19 125 1.79e-36 131
MS.gene053397.t1 AT5G59780 53.398 103 48 0 13 115 9 111 2.70e-36 129
MS.gene053397.t1 AT1G25340 55.357 112 43 2 13 122 19 125 2.92e-36 131
MS.gene053397.t1 AT3G53200 55.769 104 46 0 12 115 9 112 3.23e-35 127
MS.gene053397.t1 AT3G06490 58.252 103 43 0 12 114 19 121 3.59e-35 129
MS.gene053397.t1 AT3G12820 49.242 132 65 1 47 176 1 132 6.47e-35 124
MS.gene053397.t1 AT5G49620 55.140 107 48 0 8 114 22 128 1.09e-34 127
MS.gene053397.t1 AT5G35550 65.116 86 30 0 39 124 44 129 3.45e-33 122
MS.gene053397.t1 AT5G14750 64.103 78 25 1 39 116 12 86 9.25e-33 118
MS.gene053397.t1 AT5G26660 72.222 72 20 0 45 116 14 85 9.67e-33 122
MS.gene053397.t1 AT3G60460 45.299 117 62 2 7 122 6 121 1.22e-31 119
MS.gene053397.t1 AT5G49620 48.760 121 48 1 8 114 22 142 4.50e-31 118
MS.gene053397.t1 AT2G26950 49.000 100 51 0 9 108 13 112 5.83e-30 116
MS.gene053397.t1 AT5G40350 37.143 175 86 7 45 215 5 159 1.79e-29 110
MS.gene053397.t1 AT3G47600 63.636 77 28 0 45 121 39 115 1.22e-28 111
MS.gene053397.t1 AT3G27810 59.459 74 30 0 43 116 2 75 4.01e-28 106
MS.gene053397.t1 AT4G37260 50.000 102 50 1 14 115 13 113 1.34e-27 108
MS.gene053397.t1 AT2G23290 50.000 102 50 1 14 115 13 113 2.61e-27 107
MS.gene053397.t1 AT3G46130 61.111 72 28 0 44 115 9 80 2.68e-27 105
MS.gene053397.t1 AT3G55730 42.763 152 62 4 14 145 56 202 3.08e-27 109
MS.gene053397.t1 AT5G59780 61.972 71 27 0 45 115 20 90 4.26e-27 105
MS.gene053397.t1 AT3G46130 61.972 71 27 0 45 115 20 90 6.64e-27 105
MS.gene053397.t1 AT3G50060 40.667 150 84 2 14 159 6 154 1.40e-26 105
MS.gene053397.t1 AT3G09230 44.954 109 51 2 14 118 55 158 1.46e-26 107
MS.gene053397.t1 AT3G53200 63.380 71 26 0 45 115 9 79 1.61e-26 103
MS.gene053397.t1 AT3G09370 42.208 154 67 5 12 148 141 289 2.80e-26 107
MS.gene053397.t1 AT3G09370 37.000 100 61 2 14 112 91 189 1.49e-13 70.9
MS.gene053397.t1 AT3G09370 42.208 154 67 5 12 148 133 281 2.96e-26 107
MS.gene053397.t1 AT3G09370 37.000 100 61 2 14 112 83 181 1.62e-13 70.5
MS.gene053397.t1 AT5G67300 39.041 146 86 2 14 159 6 148 3.08e-26 105
MS.gene053397.t1 AT3G09370 42.208 154 67 5 12 148 128 276 3.27e-26 107
MS.gene053397.t1 AT3G09370 37.000 100 61 2 14 112 78 176 1.67e-13 70.5
MS.gene053397.t1 AT2G39880 50.000 106 44 2 14 115 50 150 4.62e-26 105
MS.gene053397.t1 AT3G27785 47.525 101 52 1 8 108 183 282 6.39e-25 103
MS.gene053397.t1 AT1G22640 62.857 70 25 1 58 127 1 69 7.62e-25 98.6
MS.gene053397.t1 AT5G11510 46.789 109 49 2 12 116 79 182 8.06e-25 104
MS.gene053397.t1 AT5G11510 36.000 100 62 2 14 112 29 127 2.43e-14 73.2
MS.gene053397.t1 AT5G11510 46.789 109 49 2 12 116 79 182 8.06e-25 104
MS.gene053397.t1 AT5G11510 36.000 100 62 2 14 112 29 127 2.43e-14 73.2
MS.gene053397.t1 AT5G11510 46.789 109 49 2 12 116 79 182 8.06e-25 104
MS.gene053397.t1 AT5G11510 36.000 100 62 2 14 112 29 127 2.43e-14 73.2
MS.gene053397.t1 AT1G66380 62.500 72 27 0 44 115 7 78 9.46e-25 95.5
MS.gene053397.t1 AT4G18770 43.243 111 58 2 8 116 211 318 1.03e-24 102
MS.gene053397.t1 AT5G11510 46.789 109 49 2 12 116 79 182 1.04e-24 103
MS.gene053397.t1 AT5G11510 36.000 100 62 2 14 112 29 127 2.42e-14 73.2
MS.gene053397.t1 AT5G11510 46.789 109 49 2 12 116 79 182 1.17e-24 103
MS.gene053397.t1 AT5G11510 36.000 100 62 2 14 112 29 127 2.71e-14 73.2
MS.gene053397.t1 AT5G02320 39.189 148 86 2 12 156 125 271 1.19e-24 103
MS.gene053397.t1 AT5G02320 34.000 100 64 2 14 112 75 173 9.61e-13 68.2
MS.gene053397.t1 AT5G02320 39.189 148 86 2 12 156 125 271 1.19e-24 103
MS.gene053397.t1 AT5G02320 34.000 100 64 2 14 112 75 173 9.61e-13 68.2
MS.gene053397.t1 AT5G02320 39.189 148 86 2 12 156 65 211 1.31e-24 102
MS.gene053397.t1 AT5G02320 34.000 100 64 2 14 112 15 113 1.23e-12 67.8
MS.gene053397.t1 AT5G40360 30.928 194 107 4 8 200 152 319 1.39e-24 101
MS.gene053397.t1 AT1G66380 54.217 83 38 0 10 92 6 88 2.41e-24 94.7
MS.gene053397.t1 AT1G17950 48.544 103 50 2 14 115 5 105 3.71e-24 98.2
MS.gene053397.t1 AT4G33450 41.593 113 60 2 3 115 13 119 6.76e-24 97.4
MS.gene053397.t1 AT4G32730 42.857 105 59 1 12 116 85 188 4.23e-23 99.4
MS.gene053397.t1 AT4G32730 37.000 100 61 2 14 112 35 133 5.30e-14 72.4
MS.gene053397.t1 AT4G32730 42.857 105 59 1 12 116 85 188 4.23e-23 99.4
MS.gene053397.t1 AT4G32730 37.000 100 61 2 14 112 35 133 5.30e-14 72.4
MS.gene053397.t1 AT4G32730 42.857 105 59 1 12 116 85 188 4.23e-23 99.4
MS.gene053397.t1 AT4G32730 37.000 100 61 2 14 112 35 133 5.30e-14 72.4
MS.gene053397.t1 AT4G32730 42.857 105 59 1 12 116 85 188 4.23e-23 99.4
MS.gene053397.t1 AT4G32730 37.000 100 61 2 14 112 35 133 5.30e-14 72.4
MS.gene053397.t1 AT5G58850 46.465 99 52 1 10 108 101 198 4.25e-23 98.2
MS.gene053397.t1 AT1G18960 44.828 116 57 4 1 116 1 109 4.44e-23 96.3
MS.gene053397.t1 AT4G32730 42.857 105 59 1 12 116 85 188 4.89e-23 99.0
MS.gene053397.t1 AT4G32730 37.000 100 61 2 14 112 35 133 5.92e-14 72.0
MS.gene053397.t1 AT1G69560 28.112 249 155 5 9 256 118 343 9.70e-23 96.3
MS.gene053397.t1 AT1G69560 30.357 224 131 6 9 230 102 302 1.03e-22 95.9
MS.gene053397.t1 AT5G14750 61.017 59 23 0 58 116 1 59 2.03e-22 90.5
MS.gene053397.t1 AT5G14750 61.017 59 23 0 58 116 1 59 2.03e-22 90.5
MS.gene053397.t1 AT3G29020 40.777 103 60 1 14 116 65 166 2.47e-22 92.8
MS.gene053397.t1 AT3G29020 40.777 103 60 1 14 116 67 168 4.24e-22 93.6
MS.gene053397.t1 AT5G11050 39.568 139 62 4 10 144 101 221 5.04e-22 95.1
MS.gene053397.t1 AT1G73410 47.664 107 53 2 14 119 6 110 8.02e-22 91.7
MS.gene053397.t1 AT1G71030 49.398 83 41 1 35 117 4 85 1.05e-21 90.1
MS.gene053397.t1 AT1G71030 55.224 67 30 0 51 117 5 71 1.18e-21 89.7
MS.gene053397.t1 AT5G17800 42.157 102 58 1 14 115 93 193 1.20e-21 92.8
MS.gene053397.t1 AT1G26780 43.810 105 56 2 12 115 96 198 1.72e-21 91.7
MS.gene053397.t1 AT1G26780 43.810 105 56 2 12 115 96 198 1.76e-21 92.8
MS.gene053397.t1 AT1G73410 47.664 107 53 2 14 119 6 110 2.29e-21 89.7
MS.gene053397.t1 AT4G00540 40.741 108 60 2 12 116 101 207 2.61e-18 84.3
MS.gene053397.t1 AT4G00540 34.579 107 62 2 14 112 46 152 3.83e-13 69.3
MS.gene053397.t1 AT5G39700 40.777 103 60 1 8 110 50 151 3.95e-18 80.5
MS.gene053397.t1 AT4G00540 40.741 108 60 2 12 116 99 205 4.65e-18 84.0
MS.gene053397.t1 AT4G00540 34.579 107 62 2 14 112 44 150 6.20e-13 68.6
MS.gene053397.t1 AT2G37630 38.614 101 60 1 17 115 7 107 5.14e-18 83.2
MS.gene053397.t1 AT1G14350 40.171 117 68 2 17 132 28 143 8.54e-18 83.2
MS.gene053397.t1 AT1G14350 40.171 117 68 2 17 132 28 143 8.54e-18 83.2
MS.gene053397.t1 AT2G25230 39.823 113 64 3 7 118 19 128 1.95e-17 79.7
MS.gene053397.t1 AT2G02820 41.414 99 57 1 17 115 33 130 2.05e-16 78.2
MS.gene053397.t1 AT4G25560 66.038 53 18 0 71 123 3 55 2.54e-16 76.3
MS.gene053397.t1 AT2G02820 40.404 99 58 1 17 115 33 130 2.68e-16 79.0
MS.gene053397.t1 AT2G02820 40.404 99 58 1 17 115 33 130 3.05e-16 78.6
MS.gene053397.t1 AT1G16490 36.667 150 80 6 77 224 12 148 4.08e-14 70.1
MS.gene053397.t1 AT5G40430 35.398 113 68 4 7 118 47 155 7.36e-14 70.1
MS.gene053397.t1 AT5G59780 60.465 43 17 0 73 115 4 46 9.45e-13 65.5
MS.gene053397.t1 AT3G46130 60.465 43 17 0 73 115 4 46 1.48e-12 65.5
MS.gene053397.t1 AT3G18100 34.375 96 62 1 13 108 545 639 1.15e-11 65.5
MS.gene053397.t1 AT3G18100 34.375 96 62 1 13 108 497 591 1.38e-11 65.1
MS.gene053397.t1 AT3G18100 34.375 96 62 1 13 108 384 478 1.54e-11 64.7
MS.gene053397.t1 AT3G18100 34.375 96 62 1 13 108 332 426 1.78e-11 64.7
MS.gene053397.t1 AT5G61420 70.270 37 11 0 81 117 2 38 6.77e-11 62.0
MS.gene053397.t1 AT1G74650 65.000 40 14 0 78 117 2 41 7.34e-11 61.6
MS.gene053397.t1 AT1G14350 42.308 78 44 1 56 132 23 100 7.46e-11 62.4
MS.gene053397.t1 AT1G14350 42.308 78 44 1 56 132 23 100 7.46e-11 62.4

Find 40 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATTGGGTTGGTTATTAT+TGG 0.197277 1.4:+27410889 None:intergenic
CAAAAGCTTTCATCAATTTC+AGG 0.250594 1.4:+27410644 None:intergenic
CATCATCATCAAAAGGGTTT+TGG 0.270158 1.4:+27410507 None:intergenic
ATTTCAAGGAAATGATTATT+AGG 0.271167 1.4:+27410776 None:intergenic
TGAAAAGAAGGGATTGAAAA+AGG 0.278369 1.4:-27412164 MS.gene053397:CDS
ATTTCATTGTCTGTTCTTCC+AGG 0.290962 1.4:+27410956 None:intergenic
CTGAAATTGATGAAAGCTTT+TGG 0.299877 1.4:-27410643 MS.gene053397:CDS
TAATAATCATTTCCTTGAAA+TGG 0.309003 1.4:-27410774 MS.gene053397:CDS
TTAAAATTGTATTGTTGATC+TGG 0.320458 1.4:+27410548 None:intergenic
AAATTTCCTCTCTTAATATC+AGG 0.325119 1.4:+27411853 None:intergenic
GAACAAATACCTGCATGTTT+TGG 0.334771 1.4:+27412064 None:intergenic
ATGATGTAGTTTCCATTTCA+AGG 0.368426 1.4:+27410762 None:intergenic
TTCAGTTATAGTGCTGGAAT+TGG 0.372489 1.4:+27410820 None:intergenic
GAGGATTTCATCTTCCTCTA+AGG 0.392145 1.4:+27412132 None:intergenic
TGCATGAGTCACTGGGGAAC+AGG 0.418688 1.4:-27411798 MS.gene053397:intron
AAAGGGTCCTTGGACCTTAG+AGG 0.420566 1.4:-27412146 MS.gene053397:CDS
GAAACTGTCATAGAATTTGA+AGG 0.428347 1.4:+27410581 None:intergenic
CATCAAGATGCATGAGTCAC+TGG 0.430430 1.4:-27411806 MS.gene053397:CDS
TGATTATTAGGACTATTAGA+AGG 0.435165 1.4:+27410788 None:intergenic
GGCTCCTTGTTGTGAAAAGA+AGG 0.442620 1.4:-27412176 MS.gene053397:CDS
GTTGACGTGTTCATCAAATC+AGG 0.454653 1.4:-27410467 MS.gene053397:CDS
ATGCCATCATCATCATCAAA+AGG 0.459761 1.4:+27410500 None:intergenic
ATAAACATGGACATAGCAAT+TGG 0.459805 1.4:-27412096 MS.gene053397:CDS
GCCATAGCAGCAAAATTGCC+TGG 0.464914 1.4:-27410974 MS.gene053397:CDS
ATGATATAAGTCTAAAACTC+TGG 0.464984 1.4:+27410428 None:intergenic
ATTGTCACAAATGAGTCTTC+AGG 0.502135 1.4:+27410668 None:intergenic
ATATGATTCAGTTATAGTGC+TGG 0.510879 1.4:+27410814 None:intergenic
TTTGCAGGTTTATTAAGATG+TGG 0.531442 1.4:-27411913 MS.gene053397:intron
ATCAAGATGCATGAGTCACT+GGG 0.537633 1.4:-27411805 MS.gene053397:CDS
TGCCATCATCATCATCAAAA+GGG 0.537845 1.4:+27410501 None:intergenic
TGTCATAGAATTTGAAGGCA+TGG 0.547306 1.4:+27410586 None:intergenic
TCATCTTCCTCTAAGGTCCA+AGG 0.559081 1.4:+27412139 None:intergenic
GAAAGAGTTGTCGATTGAGA+TGG 0.564322 1.4:-27411891 MS.gene053397:CDS
TTAAAACCTGATATTAAGAG+AGG 0.565110 1.4:-27411859 MS.gene053397:CDS
GCTCCTTGTTGTGAAAAGAA+GGG 0.589438 1.4:-27412175 MS.gene053397:CDS
CGTGCCCTACCAAAACATGC+AGG 0.611878 1.4:-27412073 MS.gene053397:intron
ACATCATACATCAATAAACA+TGG 0.617616 1.4:-27412109 MS.gene053397:CDS
CATAGAATTTGAAGGCATGG+TGG 0.641607 1.4:+27410589 None:intergenic
GTTTATTGATGTATGATGTG+AGG 0.651160 1.4:+27412113 None:intergenic
TCAAGATGCATGAGTCACTG+GGG 0.758088 1.4:-27411804 MS.gene053397:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTAATTAATTTATAA+AGG - chr1.4:27411163-27411182 MS.gene053397:intron 0.0%
!! ACTAATGTTAATATATAAAA+TGG - chr1.4:27411204-27411223 MS.gene053397:intron 10.0%
!!! AGATATAATATTATACTTTT+GGG - chr1.4:27410638-27410657 MS.gene053397:CDS 10.0%
!!! TAGATATAATATTATACTTT+TGG - chr1.4:27410637-27410656 MS.gene053397:CDS 10.0%
!! ACAATGAAATAAAAAATGTA+TGG - chr1.4:27411680-27411699 MS.gene053397:intron 15.0%
!! ATCAAAATTAAGATAATACT+AGG - chr1.4:27411352-27411371 MS.gene053397:intron 15.0%
!! CTTGATAAATATTACTTTAT+AGG - chr1.4:27410588-27410607 MS.gene053397:CDS 15.0%
!!! ATACAATTTTAATAATTCAG+TGG - chr1.4:27412086-27412105 MS.gene053397:CDS 15.0%
!!! TTGTTTTTAAAACTGAATTT+GGG - chr1.4:27410970-27410989 MS.gene053397:CDS 15.0%
!!! TTTGTTTTTAAAACTGAATT+TGG - chr1.4:27410969-27410988 MS.gene053397:CDS 15.0%
!! AATATTTAATTCTTGCTTTC+AGG - chr1.4:27411620-27411639 MS.gene053397:intron 20.0%
!! ATTTCAAGGAAATGATTATT+AGG + chr1.4:27411850-27411869 None:intergenic 20.0%
!! TAATAATCATTTCCTTGAAA+TGG - chr1.4:27411849-27411868 MS.gene053397:CDS 20.0%
!! TTAAAATTGTATTGTTGATC+TGG + chr1.4:27412078-27412097 None:intergenic 20.0%
!!! AAATTTTTCAAATGAAGAAG+AGG - chr1.4:27410787-27410806 MS.gene053397:CDS 20.0%
!!! ATTATACTTTTGGGATAATT+TGG - chr1.4:27410647-27410666 MS.gene053397:CDS 20.0%
!!! TTGCAATAAACAACAAATTT+TGG + chr1.4:27411493-27411512 None:intergenic 20.0%
! AAATTTCCTCTCTTAATATC+AGG + chr1.4:27410773-27410792 None:intergenic 25.0%
! ACATCATACATCAATAAACA+TGG - chr1.4:27410514-27410533 MS.gene053397:CDS 25.0%
! AGTAGACAATATTTAAGTAG+TGG - chr1.4:27411127-27411146 MS.gene053397:intron 25.0%
! GTAGACAATATTTAAGTAGT+GGG - chr1.4:27411128-27411147 MS.gene053397:intron 25.0%
! TAGACAATATTTAAGTAGTG+GGG - chr1.4:27411129-27411148 MS.gene053397:intron 25.0%
! TGATTATTAGGACTATTAGA+AGG + chr1.4:27411838-27411857 None:intergenic 25.0%
! TGTTTCTTATAACTGCATTT+CGG - chr1.4:27411039-27411058 MS.gene053397:intron 25.0%
! TTAAAACCTGATATTAAGAG+AGG - chr1.4:27410764-27410783 MS.gene053397:CDS 25.0%
! TTCATCACAAGGAAAAAATT+TGG - chr1.4:27411909-27411928 MS.gene053397:CDS 25.0%
!! AAGACTACAAATTCTGAAAA+AGG + chr1.4:27410902-27410921 None:intergenic 25.0%
!!! CTCTTTTTGGTATTTGAATT+GGG + chr1.4:27411751-27411770 None:intergenic 25.0%
!!! TCTCTTTTTGGTATTTGAAT+TGG + chr1.4:27411752-27411771 None:intergenic 25.0%
!!! TTAGGTTTTGTAAATTTTGC+AGG - chr1.4:27410695-27410714 MS.gene053397:CDS 25.0%
!!! TTGTTTTGATACTCTCTTTT+TGG + chr1.4:27411764-27411783 None:intergenic 25.0%
AAGTCTTAACCTCATATAGT+AGG - chr1.4:27410922-27410941 MS.gene053397:CDS 30.0%
AGACAATATTTAAGTAGTGG+GGG - chr1.4:27411130-27411149 MS.gene053397:intron 30.0%
ATAAACATGGACATAGCAAT+TGG - chr1.4:27410527-27410546 MS.gene053397:CDS 30.0%
ATATGATTCAGTTATAGTGC+TGG + chr1.4:27411812-27411831 None:intergenic 30.0%
ATGATGTAGTTTCCATTTCA+AGG + chr1.4:27411864-27411883 None:intergenic 30.0%
ATTTAATTCTTGCTTTCAGG+TGG - chr1.4:27411623-27411642 MS.gene053397:intron 30.0%
CAAAAGCTTTCATCAATTTC+AGG + chr1.4:27411982-27412001 None:intergenic 30.0%
GAAAAGAAGGGATTGAAAAA+GGG - chr1.4:27410460-27410479 MS.gene053397:CDS 30.0%
GAAACTGTCATAGAATTTGA+AGG + chr1.4:27412045-27412064 None:intergenic 30.0%
GTTTATTGATGTATGATGTG+AGG + chr1.4:27410513-27410532 None:intergenic 30.0%
TGAAAAGAAGGGATTGAAAA+AGG - chr1.4:27410459-27410478 MS.gene053397:CDS 30.0%
TTTGCAGGTTTATTAAGATG+TGG - chr1.4:27410710-27410729 MS.gene053397:CDS 30.0%
! CTGAAATTGATGAAAGCTTT+TGG - chr1.4:27411980-27411999 MS.gene053397:intron 30.0%
! TCTAGTGATTTTTCATCACA+AGG - chr1.4:27411898-27411917 MS.gene053397:CDS 30.0%
! TTTTGGTATTTGAATTGGGT+TGG + chr1.4:27411747-27411766 None:intergenic 30.0%
!! TGAATTGGGTTGGTTATTAT+TGG + chr1.4:27411737-27411756 None:intergenic 30.0%
!!! CAAATTTTGGTTGCATTGAT+TGG + chr1.4:27411480-27411499 None:intergenic 30.0%
!!! TCTCTTTTGTGTGTTGATTT+AGG - chr1.4:27410677-27410696 MS.gene053397:CDS 30.0%
ATGCCATCATCATCATCAAA+AGG + chr1.4:27412126-27412145 None:intergenic 35.0%
ATTGTCACAAATGAGTCTTC+AGG + chr1.4:27411958-27411977 None:intergenic 35.0%
ATTTCATTGTCTGTTCTTCC+AGG + chr1.4:27411670-27411689 None:intergenic 35.0%
TGCCATCATCATCATCAAAA+GGG + chr1.4:27412125-27412144 None:intergenic 35.0%
TGTCATAGAATTTGAAGGCA+TGG + chr1.4:27412040-27412059 None:intergenic 35.0%
! AATCCCTTCTTTTCACAACA+AGG + chr1.4:27410454-27410473 None:intergenic 35.0%
! CATCATCATCAAAAGGGTTT+TGG + chr1.4:27412119-27412138 None:intergenic 35.0%
! GAACAAATACCTGCATGTTT+TGG + chr1.4:27410562-27410581 None:intergenic 35.0%
! GACAATATTTAAGTAGTGGG+GGG - chr1.4:27411131-27411150 MS.gene053397:intron 35.0%
! TTCAGTTATAGTGCTGGAAT+TGG + chr1.4:27411806-27411825 None:intergenic 35.0%
!!! AAATACCTGCATGTTTTGGT+AGG + chr1.4:27410558-27410577 None:intergenic 35.0%
!!! AACCCTTTTGATGATGATGA+TGG - chr1.4:27412120-27412139 MS.gene053397:CDS 35.0%
!!! AATACCTGCATGTTTTGGTA+GGG + chr1.4:27410557-27410576 None:intergenic 35.0%
!!! ATGATGATGGCATGGATTTT+TGG - chr1.4:27412133-27412152 MS.gene053397:CDS 35.0%
!!! TGATGATGGCATGGATTTTT+GGG - chr1.4:27412134-27412153 MS.gene053397:CDS 35.0%
!!! TTTTGATGATGATGATGGCA+TGG - chr1.4:27412125-27412144 MS.gene053397:CDS 35.0%
AGCTAGCATCCTACTATATG+AGG + chr1.4:27410934-27410953 None:intergenic 40.0%
ATCAAGATGCATGAGTCACT+GGG - chr1.4:27410818-27410837 MS.gene053397:CDS 40.0%
GAGGATTTCATCTTCCTCTA+AGG + chr1.4:27410494-27410513 None:intergenic 40.0%
GCATAGTGCTATGTATGTCA+AGG + chr1.4:27411450-27411469 None:intergenic 40.0%
GTTGACGTGTTCATCAAATC+AGG - chr1.4:27412156-27412175 MS.gene053397:CDS 40.0%
! CATAGAATTTGAAGGCATGG+TGG + chr1.4:27412037-27412056 None:intergenic 40.0%
! GAAAGAGTTGTCGATTGAGA+TGG - chr1.4:27410732-27410751 MS.gene053397:CDS 40.0%
! GCTCCTTGTTGTGAAAAGAA+GGG - chr1.4:27410448-27410467 MS.gene053397:CDS 40.0%
AGGGATTGAAAAAGGGTCCT+TGG - chr1.4:27410467-27410486 MS.gene053397:CDS 45.0%
CATCAAGATGCATGAGTCAC+TGG - chr1.4:27410817-27410836 MS.gene053397:CDS 45.0%
TCAAGATGCATGAGTCACTG+GGG - chr1.4:27410819-27410838 MS.gene053397:CDS 45.0%
! GGCTCCTTGTTGTGAAAAGA+AGG - chr1.4:27410447-27410466 MS.gene053397:CDS 45.0%
! TCCAGGCAATTTTGCTGCTA+TGG + chr1.4:27411653-27411672 None:intergenic 45.0%
!! TCATCTTCCTCTAAGGTCCA+AGG + chr1.4:27410487-27410506 None:intergenic 45.0%
!!! AATTATACAATTATTTTTTT+AGG - chr1.4:27411403-27411422 MS.gene053397:intron 5.0%
AAAGGGTCCTTGGACCTTAG+AGG - chr1.4:27410477-27410496 MS.gene053397:CDS 50.0%
GCCATAGCAGCAAAATTGCC+TGG - chr1.4:27411649-27411668 MS.gene053397:intron 50.0%
CGTGCCCTACCAAAACATGC+AGG - chr1.4:27410550-27410569 MS.gene053397:CDS 55.0%
TGCATGAGTCACTGGGGAAC+AGG - chr1.4:27410825-27410844 MS.gene053397:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 27410439 27412206 27410439 ID=MS.gene053397
chr1.4 mRNA 27410439 27412206 27410439 ID=MS.gene053397.t1;Parent=MS.gene053397
chr1.4 exon 27412074 27412206 27412074 ID=MS.gene053397.t1.exon1;Parent=MS.gene053397.t1
chr1.4 CDS 27412074 27412206 27412074 ID=cds.MS.gene053397.t1;Parent=MS.gene053397.t1
chr1.4 exon 27411799 27411928 27411799 ID=MS.gene053397.t1.exon2;Parent=MS.gene053397.t1
chr1.4 CDS 27411799 27411928 27411799 ID=cds.MS.gene053397.t1;Parent=MS.gene053397.t1
chr1.4 exon 27410439 27411003 27410439 ID=MS.gene053397.t1.exon3;Parent=MS.gene053397.t1
chr1.4 CDS 27410439 27411003 27410439 ID=cds.MS.gene053397.t1;Parent=MS.gene053397.t1
Gene Sequence

>MS.gene053397

ATGGTTAGGGCTCCTTGTTGTGAAAAGAAGGGATTGAAAAAGGGTCCTTGGACCTTAGAGGAAGATGAAATCCTCACATCATACATCAATAAACATGGACATAGCAATTGGCGTGCCCTACCAAAACATGCAGGTATTTGTTCATATTTCTTGATAAATATTACTTTATAGGATATTTCTTGAATAAACTTGATGATTTAGATATAATATTATACTTTTGGGATAATTTGGAATGTATTCTCTTTTGTGTGTTGATTTAGGTTTTGTAAATTTTGCAGGTTTATTAAGATGTGGAAAGAGTTGTCGATTGAGATGGATTAACTATTTAAAACCTGATATTAAGAGAGGAAATTTTTCAAATGAAGAAGAGGAAACTATCATCAAGATGCATGAGTCACTGGGGAACAGGTAATACATATATTCAATTGTTTTTTTTTTTTTTTAGTTGCAAAATTTAGTTCCTTTTTCAGAATTTGTAGTCTTAAGTCTTAACCTCATATAGTAGGATGCTAGCTGATGATTATTACACTTTTGTTTTTAAAACTGAATTTGGGTTATGATCATTGCAACTAATTTGCTGAAATTTTGATGAGTTAATTATGTTTCTTATAACTGCATTTCGGTTTTAAATTTCTTGCTTAATTTCTTTTTCTTAATTTAAGAAATAATTTCTTTTTTGTGAAAATTAAGTAGACAATATTTAAGTAGTGGGGGGAAGTAGCATTAATATTAATTAATTTATAAAGGAAAAAAACAAGCTGTGTAACTAATGTTAATATATAAAATGGTTCACAACAACGTTCAATCAATTTTAGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATTTTTTAATATTATTTTCTAAAATATCTATCAAAATTAAGATAATACTAGGCATTTAATTTGTCGTATCAAGCACATGCAATTATACAATTATTTTTTTAGGACGCAATTATAGAATATATGTCCTTGACATACATAGCACTATGCATGTAATCCAATCAATGCAACCAAAATTTGTTGTTTATTGCAAATAAAAAACAACATCGTTGTTTTCTCAATCACTTTAAGCAAGAAGCAAAATTCGAATTGCATGCATTAATTAATATTTTTTTGATTCAATCATTCATTAATTAATTAAATATTTAATTCTTGCTTTCAGGTGGTCAGCCATAGCAGCAAAATTGCCTGGAAGAACAGACAATGAAATAAAAAATGTATGGCACACTCACTTGAAGAAAAGACTATTGAATACCAATAATAACCAACCCAATTCAAATACCAAAAAGAGAGTATCAAAACAAAAAATCAAAAGATCTGATTCCAATTCCAGCACTATAACTGAATCATATGAACCTTCTAATAGTCCTAATAATCATTTCCTTGAAATGGAAACTACATCATCAAATTGCACTTTTTCTAGTGATTTTTCATCACAAGGAAAAAATTTGGACAATAGCATCATTTGTGAAGAGCCTGAAGACTCATTTGTGACAATGCCTGAAATTGATGAAAGCTTTTGGTCAGAGACAGTAATTGATGATGAAATTAGTTCCACCATGCCTTCAAATTCTATGACAGTTTCAAATGATTTACCAGATCAACAATACAATTTTAATAATTCAGTGGAAAATTTCCAAAACCCTTTTGATGATGATGATGGCATGGATTTTTGGGTTGACGTGTTCATCAAATCAGGAGAATCAACAGAATTGCCAGAGTTTTAG
Protein sequence

>MS.gene053397.t1

MVRAPCCEKKGLKKGPWTLEEDEILTSYINKHGHSNWRALPKHAGLLRCGKSCRLRWINYLKPDIKRGNFSNEEEETIIKMHESLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLNTNNNQPNSNTKKRVSKQKIKRSDSNSSTITESYEPSNSPNNHFLEMETTSSNCTFSSDFSSQGKNLDNSIICEEPEDSFVTMPEIDESFWSETVIDDEISSTMPSNSMTVSNDLPDQQYNFNNSVENFQNPFDDDDGMDFWVDVFIKSGESTELPEF