Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053573.t1 | XP_003602973.1 | 69.6 | 388 | 88 | 5 | 6 | 367 | 5 | 388 | 3.30E-138 | 501.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053573.t1 | Q9S7T8 | 49.6 | 391 | 166 | 5 | 4 | 366 | 3 | 390 | 2.6e-99 | 363.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053573.t1 | G7J5Q8 | 69.6 | 388 | 88 | 5 | 6 | 367 | 5 | 388 | 2.4e-138 | 501.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053573 | MS.gene045585 | PPI |
| MS.gene031697 | MS.gene053573 | PPI |
| MS.gene053573 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene053573 | PPI |
| MS.gene006610 | MS.gene053573 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053573.t1 | MTR_8g027395 | 66.327 | 392 | 98 | 4 | 1 | 366 | 12 | 395 | 3.54e-177 | 498 |
| MS.gene053573.t1 | MTR_3g101010 | 69.330 | 388 | 89 | 5 | 6 | 367 | 5 | 388 | 1.67e-174 | 491 |
| MS.gene053573.t1 | MTR_3g018740 | 66.582 | 392 | 96 | 6 | 3 | 366 | 2 | 386 | 7.25e-171 | 481 |
| MS.gene053573.t1 | MTR_8g027420 | 65.879 | 381 | 107 | 6 | 1 | 366 | 1 | 373 | 1.72e-168 | 475 |
| MS.gene053573.t1 | MTR_4g045707 | 64.691 | 388 | 105 | 5 | 6 | 367 | 6 | 387 | 8.75e-168 | 474 |
| MS.gene053573.t1 | MTR_3g101180 | 61.000 | 400 | 110 | 6 | 6 | 366 | 6 | 398 | 1.04e-159 | 454 |
| MS.gene053573.t1 | MTR_3g048000 | 63.172 | 372 | 120 | 6 | 7 | 368 | 28 | 392 | 3.27e-158 | 450 |
| MS.gene053573.t1 | MTR_8g461160 | 61.558 | 398 | 115 | 6 | 1 | 366 | 1 | 392 | 3.37e-157 | 447 |
| MS.gene053573.t1 | MTR_4g088525 | 62.602 | 369 | 103 | 4 | 26 | 367 | 8 | 368 | 2.09e-156 | 444 |
| MS.gene053573.t1 | MTR_3g101030 | 60.804 | 398 | 104 | 9 | 15 | 367 | 38 | 428 | 2.37e-155 | 444 |
| MS.gene053573.t1 | MTR_2g046030 | 59.391 | 394 | 121 | 6 | 3 | 366 | 2 | 386 | 1.91e-150 | 430 |
| MS.gene053573.t1 | MTR_7g451890 | 57.436 | 390 | 138 | 3 | 4 | 366 | 12 | 400 | 3.13e-150 | 430 |
| MS.gene053573.t1 | MTR_2g045980 | 59.137 | 394 | 122 | 6 | 3 | 366 | 2 | 386 | 1.82e-148 | 425 |
| MS.gene053573.t1 | MTR_3g101130 | 57.538 | 398 | 132 | 6 | 1 | 369 | 1 | 390 | 4.63e-147 | 421 |
| MS.gene053573.t1 | MTR_7g047780 | 57.179 | 390 | 139 | 3 | 4 | 366 | 12 | 400 | 6.04e-145 | 416 |
| MS.gene053573.t1 | MTR_7g050810 | 57.179 | 390 | 139 | 3 | 4 | 366 | 14 | 402 | 9.68e-144 | 413 |
| MS.gene053573.t1 | MTR_3g015620 | 62.873 | 369 | 127 | 5 | 4 | 366 | 14 | 378 | 1.82e-143 | 412 |
| MS.gene053573.t1 | MTR_3g101050 | 59.640 | 389 | 102 | 5 | 10 | 367 | 33 | 397 | 6.63e-142 | 409 |
| MS.gene053573.t1 | MTR_4g088535 | 59.635 | 384 | 105 | 7 | 6 | 363 | 7 | 366 | 1.85e-141 | 407 |
| MS.gene053573.t1 | MTR_7g050750 | 56.410 | 390 | 142 | 3 | 4 | 366 | 6 | 394 | 1.95e-141 | 407 |
| MS.gene053573.t1 | MTR_3g102920 | 60.335 | 358 | 120 | 9 | 15 | 366 | 67 | 408 | 4.06e-132 | 384 |
| MS.gene053573.t1 | MTR_3g101190 | 56.522 | 345 | 102 | 6 | 26 | 366 | 10 | 310 | 2.29e-120 | 350 |
| MS.gene053573.t1 | MTR_3g101200 | 52.989 | 368 | 119 | 7 | 26 | 366 | 50 | 390 | 1.84e-114 | 338 |
| MS.gene053573.t1 | MTR_3g018747 | 66.532 | 248 | 67 | 3 | 132 | 366 | 9 | 253 | 1.08e-108 | 319 |
| MS.gene053573.t1 | MTR_3g100995 | 63.035 | 257 | 64 | 3 | 136 | 366 | 11 | 262 | 2.43e-108 | 318 |
| MS.gene053573.t1 | MTR_3g100010 | 53.674 | 313 | 70 | 4 | 32 | 285 | 42 | 338 | 1.55e-98 | 296 |
| MS.gene053573.t1 | MTR_7g050830 | 51.307 | 306 | 112 | 5 | 4 | 273 | 14 | 318 | 1.43e-94 | 285 |
| MS.gene053573.t1 | MTR_3g101110 | 66.667 | 210 | 68 | 2 | 135 | 342 | 71 | 280 | 1.46e-86 | 263 |
| MS.gene053573.t1 | MTR_3g015760 | 52.878 | 278 | 97 | 6 | 117 | 366 | 8 | 279 | 9.32e-81 | 248 |
| MS.gene053573.t1 | MTR_3g100520 | 55.605 | 223 | 56 | 5 | 173 | 367 | 1 | 208 | 1.61e-71 | 222 |
| MS.gene053573.t1 | MTR_3g111160 | 55.605 | 223 | 67 | 5 | 173 | 367 | 1 | 219 | 3.78e-70 | 219 |
| MS.gene053573.t1 | MTR_3g114310 | 37.795 | 381 | 178 | 11 | 31 | 365 | 40 | 407 | 3.33e-67 | 218 |
| MS.gene053573.t1 | MTR_3g101150 | 67.296 | 159 | 48 | 2 | 212 | 367 | 1 | 158 | 3.50e-67 | 209 |
| MS.gene053573.t1 | MTR_2g046410 | 55.610 | 205 | 57 | 3 | 192 | 366 | 147 | 347 | 1.50e-64 | 209 |
| MS.gene053573.t1 | MTR_3g099970 | 56.122 | 196 | 43 | 4 | 132 | 301 | 20 | 198 | 1.61e-63 | 201 |
| MS.gene053573.t1 | MTR_3g101020 | 60.355 | 169 | 38 | 2 | 198 | 366 | 19 | 158 | 1.92e-61 | 194 |
| MS.gene053573.t1 | MTR_3g111150 | 60.000 | 175 | 44 | 4 | 9 | 183 | 2 | 150 | 1.73e-60 | 192 |
| MS.gene053573.t1 | MTR_3g102870 | 62.319 | 138 | 46 | 2 | 190 | 322 | 23 | 159 | 2.52e-51 | 169 |
| MS.gene053573.t1 | MTR_3g100990 | 70.866 | 127 | 35 | 2 | 6 | 132 | 5 | 129 | 4.27e-48 | 170 |
| MS.gene053573.t1 | MTR_4g093550 | 86.667 | 90 | 11 | 1 | 1 | 90 | 1 | 89 | 1.93e-44 | 149 |
| MS.gene053573.t1 | MTR_6g046890 | 75.676 | 74 | 13 | 1 | 25 | 93 | 17 | 90 | 2.41e-27 | 105 |
| MS.gene053573.t1 | MTR_3g101140 | 54.444 | 90 | 35 | 3 | 282 | 367 | 28 | 115 | 3.51e-18 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053573.t1 | AT1G47710 | 49.616 | 391 | 166 | 5 | 4 | 366 | 3 | 390 | 2.17e-127 | 371 |
| MS.gene053573.t1 | AT1G47710 | 49.616 | 391 | 166 | 5 | 4 | 366 | 30 | 417 | 1.56e-126 | 370 |
| MS.gene053573.t1 | AT3G45220 | 45.088 | 397 | 174 | 8 | 4 | 365 | 3 | 390 | 4.48e-106 | 317 |
| MS.gene053573.t1 | AT2G25240 | 44.898 | 392 | 174 | 9 | 4 | 365 | 3 | 382 | 3.13e-101 | 305 |
| MS.gene053573.t1 | AT2G26390 | 44.000 | 400 | 170 | 11 | 4 | 365 | 3 | 386 | 2.69e-97 | 295 |
| MS.gene053573.t1 | AT1G62170 | 37.879 | 396 | 188 | 6 | 4 | 367 | 64 | 433 | 4.74e-85 | 265 |
| MS.gene053573.t1 | AT2G14540 | 41.131 | 389 | 176 | 7 | 6 | 365 | 33 | 397 | 6.27e-82 | 256 |
| MS.gene053573.t1 | AT1G64030 | 39.130 | 391 | 187 | 6 | 4 | 365 | 3 | 371 | 4.24e-80 | 250 |
| MS.gene053573.t1 | AT1G62170 | 35.431 | 429 | 186 | 8 | 4 | 367 | 64 | 466 | 5.02e-78 | 248 |
| MS.gene053573.t1 | AT2G35580 | 39.896 | 386 | 166 | 13 | 20 | 365 | 12 | 371 | 4.26e-76 | 239 |
| MS.gene053573.t1 | AT1G64010 | 41.364 | 220 | 77 | 6 | 173 | 365 | 1 | 195 | 3.17e-45 | 154 |
| MS.gene053573.t1 | AT1G64010 | 39.320 | 206 | 73 | 6 | 187 | 365 | 1 | 181 | 2.56e-36 | 130 |
| MS.gene053573.t1 | AT1G62160 | 39.344 | 183 | 83 | 4 | 187 | 367 | 64 | 220 | 1.96e-25 | 102 |
| MS.gene053573.t1 | AT1G51330 | 44.248 | 113 | 48 | 2 | 105 | 213 | 15 | 116 | 4.64e-20 | 87.4 |
| MS.gene053573.t1 | AT1G63280 | 40.517 | 116 | 43 | 2 | 129 | 218 | 5 | 120 | 1.84e-17 | 78.2 |
| MS.gene053573.t1 | AT1G64020 | 35.398 | 113 | 69 | 3 | 11 | 121 | 10 | 120 | 1.27e-13 | 67.4 |
Find 74 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATGAAAATTTGAATTT+TGG | 0.077568 | 4.4:+21338034 | None:intergenic |
| ACAAATGCATTGTACTTTAA+AGG | 0.124166 | 4.4:-21338364 | MS.gene053573:CDS |
| TGACTAAAGAAGTGAATTTA+TGG | 0.193244 | 4.4:-21338465 | MS.gene053573:CDS |
| ACAAAGTTTATTGGAGTAAT+TGG | 0.203980 | 4.4:+21337800 | None:intergenic |
| TGAAACTTCTCAAATGTTAA+AGG | 0.259898 | 4.4:-21338008 | MS.gene053573:CDS |
| TGGTCTGCTACAAAGTTTAT+TGG | 0.309628 | 4.4:+21337791 | None:intergenic |
| AGTTGTGTCTTCTAACTATA+AGG | 0.355449 | 4.4:-21341383 | MS.gene053573:CDS |
| TCTCAAATGTTAAAGGAGTT+AGG | 0.360697 | 4.4:-21338001 | MS.gene053573:CDS |
| AGTGGAACAATCCTCTTTGT+TGG | 0.405015 | 4.4:-21337737 | MS.gene053573:CDS |
| GAACAACTTGGAGCGACAAC+GGG | 0.411955 | 4.4:+21341617 | None:intergenic |
| TTCCAAGGAGAAGAGTTGTT+TGG | 0.418497 | 4.4:+21341666 | None:intergenic |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.419629 | 4.4:-21338151 | MS.gene053573:CDS |
| CCGCAGGAGCAGCGTCTTTG+AGG | 0.423984 | 4.4:+21341479 | None:intergenic |
| CAAGCTTCCTTTCACAAAAG+TGG | 0.432471 | 4.4:-21338077 | MS.gene053573:CDS |
| CCTCAAAGACGCTGCTCCTG+CGG | 0.445370 | 4.4:-21341479 | MS.gene053573:CDS |
| TCATCTTCTCCTTGCTCATA+AGG | 0.448265 | 4.4:+21338196 | None:intergenic |
| AGAAGACACAACTTCTTTGA+AGG | 0.450329 | 4.4:+21341393 | None:intergenic |
| CTCAAAGACGCTGCTCCTGC+GGG | 0.450338 | 4.4:-21341478 | MS.gene053573:CDS |
| GACTAAAGAAGTGAATTTAT+GGG | 0.454605 | 4.4:-21338464 | MS.gene053573:CDS |
| AAAAGATGGTTTGACAGCTT+TGG | 0.457312 | 4.4:-21338137 | MS.gene053573:CDS |
| TTTATTGGAGTAATTGGTAC+AGG | 0.458178 | 4.4:+21337806 | None:intergenic |
| CGCCAAACAACTCTTCTCCT+TGG | 0.458666 | 4.4:-21341668 | MS.gene053573:CDS |
| TCTCTAATTAGAAATAAGAA+AGG | 0.464787 | 4.4:+21337767 | None:intergenic |
| TAACTATAAGGCCACCACTT+TGG | 0.476189 | 4.4:-21341371 | MS.gene053573:CDS |
| GTTCTCAGCATCATCGCTGC+TGG | 0.480690 | 4.4:-21341598 | MS.gene053573:CDS |
| TTTGACAGCTTTGGTTGAAA+AGG | 0.485737 | 4.4:-21338128 | MS.gene053573:CDS |
| TGCATTTGTAAAGATGAGTC+TGG | 0.486655 | 4.4:+21338378 | None:intergenic |
| ATCATCGCTGCTGGCTCCGA+GGG | 0.486832 | 4.4:-21341589 | MS.gene053573:CDS |
| CGATGATGCTGAGAACAACT+TGG | 0.488225 | 4.4:+21341605 | None:intergenic |
| GTCTTTCATTGAAGTAAATG+AGG | 0.499860 | 4.4:-21337888 | MS.gene053573:CDS |
| GAAAGGCGAGGTCCGCCCGC+AGG | 0.502675 | 4.4:+21341463 | None:intergenic |
| CCTCGCCTTTCTGCAGCCAA+TGG | 0.511481 | 4.4:-21341451 | MS.gene053573:CDS |
| GTTAAGTTGTCGACTGACCT+TGG | 0.519038 | 4.4:+21338400 | None:intergenic |
| CATCATCGCTGCTGGCTCCG+AGG | 0.519797 | 4.4:-21341590 | MS.gene053573:CDS |
| TGGGCTATAAAAGAGACAAA+TGG | 0.519875 | 4.4:-21338445 | MS.gene053573:CDS |
| TTGAAGAAATTCTTCCTCCA+AGG | 0.523575 | 4.4:-21338417 | MS.gene053573:CDS |
| GACACAACTTCTTTGAAGGA+AGG | 0.526995 | 4.4:+21341397 | None:intergenic |
| TTGTTGTTGTGTGGGACCCT+CGG | 0.528519 | 4.4:+21341573 | None:intergenic |
| CATTGTACTTTAAAGGAGCA+TGG | 0.530170 | 4.4:-21338357 | MS.gene053573:CDS |
| CCTTTCACAAAAGTGGAAGT+AGG | 0.537882 | 4.4:-21338070 | MS.gene053573:CDS |
| TTCATTGAAGTAAATGAGGA+AGG | 0.538771 | 4.4:-21337884 | MS.gene053573:CDS |
| AGCAGCGTCTTTGAGGATGA+TGG | 0.543351 | 4.4:+21341486 | None:intergenic |
| CTAATTAGAGAAAATTTGAG+TGG | 0.545121 | 4.4:-21337755 | MS.gene053573:CDS |
| TCAACATTTGTCCAACAAAG+AGG | 0.548173 | 4.4:+21337726 | None:intergenic |
| CTAGGTCTTCCTTATGAGCA+AGG | 0.558331 | 4.4:-21338205 | MS.gene053573:intron |
| GTCGAGAAGTTGTTGTTGTG+TGG | 0.562359 | 4.4:+21341564 | None:intergenic |
| AACTGAAGCTGCCGCGATCA+CGG | 0.565833 | 4.4:-21337861 | MS.gene053573:CDS |
| AAATATGGTGGAGTCTCTCA+TGG | 0.566206 | 4.4:-21337945 | MS.gene053573:CDS |
| GTTGGTGGTTGATTCGCCGA+TGG | 0.567977 | 4.4:+21341714 | None:intergenic |
| TGATTGAGCTACCATTCAGA+AGG | 0.568160 | 4.4:+21338290 | None:intergenic |
| TTGTTCAATCCACACACCAT+TGG | 0.568654 | 4.4:+21341435 | None:intergenic |
| AGAACAACTTGGAGCGACAA+CGG | 0.573142 | 4.4:+21341616 | None:intergenic |
| TTTACGCACATGCAACCCAT+GGG | 0.579089 | 4.4:-21337833 | MS.gene053573:CDS |
| TAATTAGAAATAAGAAAGGA+TGG | 0.584460 | 4.4:+21337771 | None:intergenic |
| AAGCTTGTGGTGTAGTAACT+CGG | 0.586756 | 4.4:+21338093 | None:intergenic |
| TCGAGAAGTTGTTGTTGTGT+GGG | 0.588671 | 4.4:+21341565 | None:intergenic |
| AGTTAAAATCTATCAGCAAG+AGG | 0.601200 | 4.4:+21337701 | None:intergenic |
| AAAGACGCTGCTCCTGCGGG+CGG | 0.604225 | 4.4:-21341475 | MS.gene053573:CDS |
| ACACACCATTGGCTGCAGAA+AGG | 0.604368 | 4.4:+21341446 | None:intergenic |
| AATTGGTACAGGCATACCCA+TGG | 0.610106 | 4.4:+21337817 | None:intergenic |
| AGAGTTGTTTGGCGACGCCG+AGG | 0.614221 | 4.4:+21341677 | None:intergenic |
| CGTAAAACAAGCCGTGATCG+CGG | 0.615390 | 4.4:+21337850 | None:intergenic |
| AAAATCAACTGAAGCCAAAG+TGG | 0.615747 | 4.4:+21341357 | None:intergenic |
| ACAACAACAATGAGTTCCAT+CGG | 0.620939 | 4.4:-21341730 | None:intergenic |
| TTTCTGCAGCCAATGGTGTG+TGG | 0.622259 | 4.4:-21341444 | MS.gene053573:CDS |
| GAGTTGTTTGGCGACGCCGA+GGG | 0.622259 | 4.4:+21341678 | None:intergenic |
| GAATAAGTTGAGATGATCGA+TGG | 0.628524 | 4.4:+21341525 | None:intergenic |
| ATCAACTGAAGCCAAAGTGG+TGG | 0.631914 | 4.4:+21341360 | None:intergenic |
| AAGTTGTCGACTGACCTTGG+AGG | 0.640268 | 4.4:+21338403 | None:intergenic |
| ATTGGTACAGGCATACCCAT+GGG | 0.645699 | 4.4:+21337818 | None:intergenic |
| GATGATCGATGGATTTAGAG+CGG | 0.660698 | 4.4:+21341536 | None:intergenic |
| GATCGATGGATTTAGAGCGG+AGG | 0.713821 | 4.4:+21341539 | None:intergenic |
| AACAACTTGGAGCGACAACG+GGG | 0.719116 | 4.4:+21341618 | None:intergenic |
| CCATTGGCTGCAGAAAGGCG+AGG | 0.749180 | 4.4:+21341451 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATAAAAAAAAAAGC+CGG | + | chr4.4:21338132-21338151 | None:intergenic | 10.0% |
| !!! | ATTTTTTTAATTATGTTTGA+TGG | - | chr4.4:21338161-21338180 | MS.gene053573:CDS | 10.0% |
| !!! | TTTTTTTAATTATGTTTGAT+GGG | - | chr4.4:21338162-21338181 | MS.gene053573:CDS | 10.0% |
| !! | AAAAGAAAAAAAAAATGCAT+AGG | + | chr4.4:21339948-21339967 | None:intergenic | 15.0% |
| !! | AAAAGTTATTTATCCTTTAA+TGG | + | chr4.4:21338585-21338604 | None:intergenic | 15.0% |
| !! | AAAGAAAAAAAAAATGCATA+GGG | + | chr4.4:21339947-21339966 | None:intergenic | 15.0% |
| !! | ATCTAAATCAAAAAATATTC+TGG | - | chr4.4:21338763-21338782 | MS.gene053573:intron | 15.0% |
| !! | CATTTGAATAACATAAAATT+TGG | + | chr4.4:21340408-21340427 | None:intergenic | 15.0% |
| !! | TCTAAATCAAAAAATATTCT+GGG | - | chr4.4:21338764-21338783 | MS.gene053573:intron | 15.0% |
| !! | TTAAATTTGATATGGTTTAA+AGG | - | chr4.4:21340927-21340946 | MS.gene053573:intron | 15.0% |
| !! | TTTCTATCTTATTACATAAA+GGG | - | chr4.4:21339909-21339928 | MS.gene053573:intron | 15.0% |
| !!! | AAAATTCAAATTTTCATTTG+GGG | - | chr4.4:21341392-21341411 | MS.gene053573:CDS | 15.0% |
| !!! | AAATTTACTTTTTTTTGGTT+TGG | - | chr4.4:21338720-21338739 | MS.gene053573:intron | 15.0% |
| !!! | ACTGATTTTTAAATTTGATA+TGG | - | chr4.4:21340919-21340938 | MS.gene053573:intron | 15.0% |
| !!! | CAAAATTCAAATTTTCATTT+GGG | - | chr4.4:21341391-21341410 | MS.gene053573:CDS | 15.0% |
| !!! | GTATTATATAAATGACTTTT+TGG | - | chr4.4:21338534-21338553 | MS.gene053573:intron | 15.0% |
| !!! | TATGTTATTTGTTAAATCTT+TGG | - | chr4.4:21339543-21339562 | MS.gene053573:intron | 15.0% |
| !!! | TTAAAGGATAAATAACTTTT+TGG | - | chr4.4:21338585-21338604 | MS.gene053573:intron | 15.0% |
| !!! | TTTGAAGTTTTATTTTAGAT+CGG | - | chr4.4:21338822-21338841 | MS.gene053573:intron | 15.0% |
| !!! | TTTTCTATCTTATTACATAA+AGG | - | chr4.4:21339908-21339927 | MS.gene053573:intron | 15.0% |
| !! | AAATAACATAGAAAAAGTAG+TGG | + | chr4.4:21339533-21339552 | None:intergenic | 20.0% |
| !! | AACGGTTACAATATATTAAA+AGG | - | chr4.4:21340294-21340313 | MS.gene053573:intron | 20.0% |
| !! | AATAACATAGAAAAAGTAGT+GGG | + | chr4.4:21339532-21339551 | None:intergenic | 20.0% |
| !! | AGTAATATAGGAACTTAATT+AGG | + | chr4.4:21339391-21339410 | None:intergenic | 20.0% |
| !! | ATAAAACTAATTGTTTGTGA+AGG | + | chr4.4:21338273-21338292 | None:intergenic | 20.0% |
| !! | ATAAAATTTGGTCAAATACA+TGG | + | chr4.4:21340396-21340415 | None:intergenic | 20.0% |
| !! | ATGTAATAAGATAGAAAAGT+TGG | + | chr4.4:21339906-21339925 | None:intergenic | 20.0% |
| !! | TAATTAGAAATAAGAAAGGA+TGG | + | chr4.4:21341656-21341675 | None:intergenic | 20.0% |
| !! | TCTCTAATTAGAAATAAGAA+AGG | + | chr4.4:21341660-21341679 | None:intergenic | 20.0% |
| !! | TTATTATAACCTTGATTGAA+AGG | + | chr4.4:21338493-21338512 | None:intergenic | 20.0% |
| !! | TTTATAACCAAAAAGTAGAA+AGG | + | chr4.4:21338611-21338630 | None:intergenic | 20.0% |
| !!! | AGTATTTGTTTTAGAATACT+CGG | + | chr4.4:21340834-21340853 | None:intergenic | 20.0% |
| !!! | CCAAAATTCAAATTTTCATT+TGG | - | chr4.4:21341390-21341409 | MS.gene053573:CDS | 20.0% |
| !!! | CCAAATGAAAATTTGAATTT+TGG | + | chr4.4:21341393-21341412 | None:intergenic | 20.0% |
| !!! | TATCTTTTTGTTGTTTCTTT+GGG | + | chr4.4:21338689-21338708 | None:intergenic | 20.0% |
| !!! | TGCTTCAATCAATTTAAAAT+TGG | + | chr4.4:21340370-21340389 | None:intergenic | 20.0% |
| !!! | TTATCTTTTTGTTGTTTCTT+TGG | + | chr4.4:21338690-21338709 | None:intergenic | 20.0% |
| !!! | TTTGGTTATAAATGACTTTT+TGG | - | chr4.4:21338619-21338638 | MS.gene053573:intron | 20.0% |
| !!! | TTTTCTTTTTTACTTCCTTA+TGG | + | chr4.4:21340236-21340255 | None:intergenic | 20.0% |
| ! | AACGCTATACTGTTATATAT+TGG | + | chr4.4:21340068-21340087 | None:intergenic | 25.0% |
| ! | AATATAGGAACTTAATTAGG+TGG | + | chr4.4:21339388-21339407 | None:intergenic | 25.0% |
| ! | ACAAAGTTTATTGGAGTAAT+TGG | + | chr4.4:21341627-21341646 | None:intergenic | 25.0% |
| ! | ACAAATGCATTGTACTTTAA+AGG | - | chr4.4:21341060-21341079 | MS.gene053573:intron | 25.0% |
| ! | ACGCTATACTGTTATATATT+GGG | + | chr4.4:21340067-21340086 | None:intergenic | 25.0% |
| ! | ACTGAAGTTAATACTTGAAA+AGG | + | chr4.4:21340534-21340553 | None:intergenic | 25.0% |
| ! | AGAAAAGACAATGAACTTAA+AGG | - | chr4.4:21338969-21338988 | MS.gene053573:intron | 25.0% |
| ! | ATAACATAGAAAAAGTAGTG+GGG | + | chr4.4:21339531-21339550 | None:intergenic | 25.0% |
| ! | ATTTATATTTCTTGAGCGAA+GGG | + | chr4.4:21339131-21339150 | None:intergenic | 25.0% |
| ! | CTAATTAGAGAAAATTTGAG+TGG | - | chr4.4:21341669-21341688 | MS.gene053573:CDS | 25.0% |
| ! | CTCCTCTTAAAATAATAGAT+TGG | - | chr4.4:21339581-21339600 | MS.gene053573:intron | 25.0% |
| ! | GAAAAGACAATGAACTTAAA+GGG | - | chr4.4:21338970-21338989 | MS.gene053573:intron | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | - | chr4.4:21340960-21340979 | MS.gene053573:intron | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | - | chr4.4:21339713-21339732 | MS.gene053573:intron | 25.0% |
| ! | TAAAAAAAAAAGCCGGTATA+TGG | + | chr4.4:21338125-21338144 | None:intergenic | 25.0% |
| ! | TATCTTATTACATAAAGGGA+AGG | - | chr4.4:21339913-21339932 | MS.gene053573:intron | 25.0% |
| ! | TATTTATATTTCTTGAGCGA+AGG | + | chr4.4:21339132-21339151 | None:intergenic | 25.0% |
| ! | TGAAACTTCTCAAATGTTAA+AGG | - | chr4.4:21341416-21341435 | MS.gene053573:CDS | 25.0% |
| ! | TGACTAAAGAAGTGAATTTA+TGG | - | chr4.4:21340959-21340978 | MS.gene053573:intron | 25.0% |
| ! | TGTTCAAAAGATTGAATAGT+AGG | - | chr4.4:21340508-21340527 | MS.gene053573:intron | 25.0% |
| ! | TTGAAAGGTTAACTATCTTT+AGG | + | chr4.4:21338478-21338497 | None:intergenic | 25.0% |
| ! | TTTATTGATGCTATACATGA+AGG | + | chr4.4:21340456-21340475 | None:intergenic | 25.0% |
| !! | AATAACATTTGCTCTAGTTT+AGG | + | chr4.4:21338312-21338331 | None:intergenic | 25.0% |
| !! | AATCAAATGCTTTAGATTGT+TGG | - | chr4.4:21338398-21338417 | MS.gene053573:CDS | 25.0% |
| !! | ATTAAAAGGTATGAATTGCT+TGG | - | chr4.4:21340308-21340327 | MS.gene053573:intron | 25.0% |
| !! | TTTGGTTTACTTGTTTGTTT+GGG | + | chr4.4:21339215-21339234 | None:intergenic | 25.0% |
| !!! | GAATGACTTGTTTTCAATTT+GGG | + | chr4.4:21339159-21339178 | None:intergenic | 25.0% |
| !!! | GACCAATCTATTATTTTAAG+AGG | + | chr4.4:21339586-21339605 | None:intergenic | 25.0% |
| !!! | GTTTCTCTAATGGTTTTTTT+AGG | - | chr4.4:21339770-21339789 | MS.gene053573:intron | 25.0% |
| !!! | TCATTTTTGTACTCCTTTAA+TGG | + | chr4.4:21338656-21338675 | None:intergenic | 25.0% |
| !!! | TGAATGACTTGTTTTCAATT+TGG | + | chr4.4:21339160-21339179 | None:intergenic | 25.0% |
| !!! | TTCGATGATTTTAAAGTTCT+AGG | - | chr4.4:21341201-21341220 | MS.gene053573:intron | 25.0% |
| !!! | TTTTGCTCTAGCTTTAAATT+AGG | - | chr4.4:21340753-21340772 | MS.gene053573:intron | 25.0% |
| AACCATTCGAAAAGATTTAG+AGG | + | chr4.4:21339753-21339772 | None:intergenic | 30.0% | |
| AATCCAGAAATTATGACTTG+CGG | + | chr4.4:21340192-21340211 | None:intergenic | 30.0% | |
| AGTGGGTGTGAAAATTTAAT+TGG | + | chr4.4:21339359-21339378 | None:intergenic | 30.0% | |
| AGTTGTGTCTTCTAACTATA+AGG | - | chr4.4:21338041-21338060 | MS.gene053573:CDS | 30.0% | |
| GAAAATATGCTTAGATGGTT+TGG | + | chr4.4:21339881-21339900 | None:intergenic | 30.0% | |
| GATACAAATGGAGTTATATC+TGG | + | chr4.4:21339088-21339107 | None:intergenic | 30.0% | |
| GATAGTTAACCTTTCAATCA+AGG | - | chr4.4:21338481-21338500 | MS.gene053573:intron | 30.0% | |
| GTCTTTCATTGAAGTAAATG+AGG | - | chr4.4:21341536-21341555 | MS.gene053573:CDS | 30.0% | |
| GTTTATATTGAGCACAAAGT+AGG | - | chr4.4:21340258-21340277 | MS.gene053573:intron | 30.0% | |
| TAACATAGAAAAAGTAGTGG+GGG | + | chr4.4:21339530-21339549 | None:intergenic | 30.0% | |
| TCTCAAATGTTAAAGGAGTT+AGG | - | chr4.4:21341423-21341442 | MS.gene053573:CDS | 30.0% | |
| TGGTAGAAAATATGCTTAGA+TGG | + | chr4.4:21339886-21339905 | None:intergenic | 30.0% | |
| TGTAAGAAGAGTAGATCAAA+TGG | + | chr4.4:21339828-21339847 | None:intergenic | 30.0% | |
| TTCATTGAAGTAAATGAGGA+AGG | - | chr4.4:21341540-21341559 | MS.gene053573:CDS | 30.0% | |
| TTGATCTACTCTTCTTACAA+CGG | - | chr4.4:21339829-21339848 | MS.gene053573:intron | 30.0% | |
| TTGGTTTACTTGTTTGTTTG+GGG | + | chr4.4:21339214-21339233 | None:intergenic | 30.0% | |
| TTTATGTCTCGGATCAATTA+GGG | + | chr4.4:21339423-21339442 | None:intergenic | 30.0% | |
| TTTATTGGAGTAATTGGTAC+AGG | + | chr4.4:21341621-21341640 | None:intergenic | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | - | chr4.4:21341273-21341292 | MS.gene053573:intron | 30.0% | |
| ! | AGTTCATTGTCTTTTCTTAG+TGG | + | chr4.4:21338966-21338985 | None:intergenic | 30.0% |
| ! | CTTTGGTTTACTTGTTTGTT+TGG | + | chr4.4:21339216-21339235 | None:intergenic | 30.0% |
| ! | GCCAAAATCTTTTTAGACAT+TGG | + | chr4.4:21338921-21338940 | None:intergenic | 30.0% |
| ! | GCCAATGTCTAAAAAGATTT+TGG | - | chr4.4:21338917-21338936 | MS.gene053573:intron | 30.0% |
| ! | GGTTTGAAATGAACCATTAA+AGG | - | chr4.4:21338640-21338659 | MS.gene053573:intron | 30.0% |
| ! | TATGATTTTCACCTTCTGAA+TGG | - | chr4.4:21341123-21341142 | MS.gene053573:intron | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr4.4:21339709-21339728 | None:intergenic | 30.0% |
| ! | TTTTATGTCTCGGATCAATT+AGG | + | chr4.4:21339424-21339443 | None:intergenic | 30.0% |
| ! | TTTTCGAATGGTTTCTCTAA+TGG | - | chr4.4:21339760-21339779 | MS.gene053573:intron | 30.0% |
| !! | AACTTGCTTTCGATTTTGAA+AGG | + | chr4.4:21339297-21339316 | None:intergenic | 30.0% |
| !! | TTCAGTTGATTTTCTGAACA+AGG | - | chr4.4:21338077-21338096 | MS.gene053573:CDS | 30.0% |
| !! | TTTTTGGCCTTTCTACTTTT+TGG | - | chr4.4:21338601-21338620 | MS.gene053573:intron | 30.0% |
| !!! | GGGATTTTGGTTAGTAATAT+AGG | + | chr4.4:21339403-21339422 | None:intergenic | 30.0% |
| !!! | GTCTAAAAAGATTTTGGCTA+TGG | - | chr4.4:21338923-21338942 | MS.gene053573:intron | 30.0% |
| !!! | TTTTTGTTGTTTCTTTGGGT+TGG | + | chr4.4:21338685-21338704 | None:intergenic | 30.0% |
| AAAAGATGGTTTGACAGCTT+TGG | - | chr4.4:21341287-21341306 | MS.gene053573:intron | 35.0% | |
| AAAATCAACTGAAGCCAAAG+TGG | + | chr4.4:21338070-21338089 | None:intergenic | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | + | chr4.4:21339825-21339844 | None:intergenic | 35.0% | |
| AAGGAAAGAGTAACATGTCT+AGG | + | chr4.4:21340437-21340456 | None:intergenic | 35.0% | |
| ACTCTTCTCCTTGGAAAAAT+CGG | - | chr4.4:21337765-21337784 | MS.gene053573:CDS | 35.0% | |
| AGAAGACACAACTTCTTTGA+AGG | + | chr4.4:21338034-21338053 | None:intergenic | 35.0% | |
| AGATTTAGAGGTCAATGAGT+TGG | + | chr4.4:21339741-21339760 | None:intergenic | 35.0% | |
| AGCTAGAGCAAAACTCTATA+TGG | + | chr4.4:21340746-21340765 | None:intergenic | 35.0% | |
| AGGTATTTATACTTCCCAAG+CGG | + | chr4.4:21339277-21339296 | None:intergenic | 35.0% | |
| AGTCAGGTTAAAAGAGATAG+AGG | + | chr4.4:21339800-21339819 | None:intergenic | 35.0% | |
| ATATCCATACGACCATATAC+CGG | - | chr4.4:21338110-21338129 | MS.gene053573:CDS | 35.0% | |
| ATCACACACTTCATGCTTTA+AGG | + | chr4.4:21338346-21338365 | None:intergenic | 35.0% | |
| ATGAATGATTCAGCATTTCC+AGG | + | chr4.4:21338370-21338389 | None:intergenic | 35.0% | |
| ATGCACATATAGTAGATTGG+GGG | - | chr4.4:21339498-21339517 | MS.gene053573:intron | 35.0% | |
| ATTCTGATCGTACAACTTCA+TGG | - | chr4.4:21340332-21340351 | MS.gene053573:intron | 35.0% | |
| CATGACACAAATGGTTTCTT+TGG | + | chr4.4:21339233-21339252 | None:intergenic | 35.0% | |
| CATTGAAGGTGAACCATTAA+AGG | - | chr4.4:21338569-21338588 | MS.gene053573:intron | 35.0% | |
| CTTTAATGGTTCACCTTCAA+TGG | + | chr4.4:21338571-21338590 | None:intergenic | 35.0% | |
| GATGCACATATAGTAGATTG+GGG | - | chr4.4:21339497-21339516 | MS.gene053573:intron | 35.0% | |
| GGATGCACATATAGTAGATT+GGG | - | chr4.4:21339496-21339515 | MS.gene053573:intron | 35.0% | |
| GGGTGTGAAAATTTAATTGG+AGG | + | chr4.4:21339356-21339375 | None:intergenic | 35.0% | |
| GTAGGATCTTAGCATTCTAA+CGG | - | chr4.4:21340276-21340295 | MS.gene053573:intron | 35.0% | |
| TAATCCACTGAAATTGACAC+CGG | + | chr4.4:21340721-21340740 | None:intergenic | 35.0% | |
| TACTTGTAGCTTCTCATGAA+GGG | + | chr4.4:21341165-21341184 | None:intergenic | 35.0% | |
| TAGCAAGTTCTGCAATTCTA+TGG | - | chr4.4:21340484-21340503 | MS.gene053573:intron | 35.0% | |
| TCCAAACCTTTGTTAGAAGT+TGG | - | chr4.4:21339004-21339023 | MS.gene053573:intron | 35.0% | |
| TCCAACTTCTAACAAAGGTT+TGG | + | chr4.4:21339008-21339027 | None:intergenic | 35.0% | |
| TCGTTGAAGCATGATACAAA+TGG | + | chr4.4:21339100-21339119 | None:intergenic | 35.0% | |
| TCTGGATTCATCACTACTTA+CGG | - | chr4.4:21340204-21340223 | MS.gene053573:intron | 35.0% | |
| TGCATTTGTAAAGATGAGTC+TGG | + | chr4.4:21341049-21341068 | None:intergenic | 35.0% | |
| TGGGCTATAAAAGAGACAAA+TGG | - | chr4.4:21340979-21340998 | MS.gene053573:intron | 35.0% | |
| TGGTCTGCTACAAAGTTTAT+TGG | + | chr4.4:21341636-21341655 | None:intergenic | 35.0% | |
| TTAACTATCTTTAGGCCACT+TGG | + | chr4.4:21338470-21338489 | None:intergenic | 35.0% | |
| TTAGTGGTTGCTTCAAGATA+GGG | + | chr4.4:21338950-21338969 | None:intergenic | 35.0% | |
| TTGAAGAAATTCTTCCTCCA+AGG | - | chr4.4:21341007-21341026 | MS.gene053573:intron | 35.0% | |
| ! | AACCAAGAAAACTTTTCCCT+CGG | - | chr4.4:21337730-21337749 | MS.gene053573:CDS | 35.0% |
| ! | AAGTACACATCTAGTATCGA+CGG | - | chr4.4:21338891-21338910 | MS.gene053573:intron | 35.0% |
| ! | ACTTTAATTTCCTCTCCTCA+TGG | - | chr4.4:21340615-21340634 | MS.gene053573:intron | 35.0% |
| ! | ATCCAGAAATTATGACTTGC+GGG | + | chr4.4:21340191-21340210 | None:intergenic | 35.0% |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr4.4:21339729-21339748 | None:intergenic | 35.0% |
| ! | CATTGTACTTTAAAGGAGCA+TGG | - | chr4.4:21341067-21341086 | MS.gene053573:intron | 35.0% |
| ! | GAATAAGTTGAGATGATCGA+TGG | + | chr4.4:21337902-21337921 | None:intergenic | 35.0% |
| ! | GACCTCTAAATCTTTTCGAA+TGG | - | chr4.4:21339748-21339767 | MS.gene053573:intron | 35.0% |
| ! | GGTTTGAAATGAACCATTGA+AGG | - | chr4.4:21338555-21338574 | MS.gene053573:intron | 35.0% |
| ! | GTACTTCGTGAGTATTTTGT+GGG | + | chr4.4:21338877-21338896 | None:intergenic | 35.0% |
| ! | GTCAAACCATCTTTTGCATT+TGG | + | chr4.4:21341282-21341301 | None:intergenic | 35.0% |
| ! | TGATTTTACCTTTCTCTCCT+GGG | - | chr4.4:21341448-21341467 | MS.gene053573:CDS | 35.0% |
| ! | TGTACTTCGTGAGTATTTTG+TGG | + | chr4.4:21338878-21338897 | None:intergenic | 35.0% |
| ! | TTTGACAGCTTTGGTTGAAA+AGG | - | chr4.4:21341296-21341315 | MS.gene053573:intron | 35.0% |
| !! | ATACTTGGTTCTTTTTGCAC+CGG | + | chr4.4:21339055-21339074 | None:intergenic | 35.0% |
| !! | GACTTGTTTTCAATTTGGGA+CGG | + | chr4.4:21339155-21339174 | None:intergenic | 35.0% |
| AAATGGTATACCATGAGGAG+AGG | + | chr4.4:21340628-21340647 | None:intergenic | 40.0% | |
| AACGCAAATGGTATACCATG+AGG | + | chr4.4:21340633-21340652 | None:intergenic | 40.0% | |
| AAGCTTGTGGTGTAGTAACT+CGG | + | chr4.4:21341334-21341353 | None:intergenic | 40.0% | |
| AATCCACTGAAATTGACACC+GGG | + | chr4.4:21340720-21340739 | None:intergenic | 40.0% | |
| ATTTATACTTCCCAAGCGGA+GGG | + | chr4.4:21339273-21339292 | None:intergenic | 40.0% | |
| CAAAGCTTCTATAGACCAAG+TGG | - | chr4.4:21338452-21338471 | MS.gene053573:CDS | 40.0% | |
| CAAGCTTCCTTTCACAAAAG+TGG | - | chr4.4:21341347-21341366 | MS.gene053573:intron | 40.0% | |
| CACTTGGTCTATAGAAGCTT+TGG | + | chr4.4:21338454-21338473 | None:intergenic | 40.0% | |
| CCTTTCACAAAAGTGGAAGT+AGG | - | chr4.4:21341354-21341373 | MS.gene053573:CDS | 40.0% | |
| CGGATGCACATATAGTAGAT+TGG | - | chr4.4:21339495-21339514 | MS.gene053573:intron | 40.0% | |
| CTACTTGTAGCTTCTCATGA+AGG | + | chr4.4:21341166-21341185 | None:intergenic | 40.0% | |
| CTGGATTCATCACTACTTAC+GGG | - | chr4.4:21340205-21340224 | MS.gene053573:intron | 40.0% | |
| CTTAGTGGTTGCTTCAAGAT+AGG | + | chr4.4:21338951-21338970 | None:intergenic | 40.0% | |
| GGATGTCCAACTTCTAACAA+AGG | + | chr4.4:21339013-21339032 | None:intergenic | 40.0% | |
| GTTTGTTTGGGGATTGTAGT+TGG | + | chr4.4:21339183-21339202 | None:intergenic | 40.0% | |
| TAACTATAAGGCCACCACTT+TGG | - | chr4.4:21338053-21338072 | MS.gene053573:CDS | 40.0% | |
| TATTTATACTTCCCAAGCGG+AGG | + | chr4.4:21339274-21339293 | None:intergenic | 40.0% | |
| TCATCTTCTCCTTGCTCATA+AGG | + | chr4.4:21341231-21341250 | None:intergenic | 40.0% | |
| TCATGGTATACCATTTGCGT+TGG | - | chr4.4:21340632-21340651 | MS.gene053573:intron | 40.0% | |
| TCTTATGCACATGATCCTTC+CGG | - | chr4.4:21339033-21339052 | MS.gene053573:intron | 40.0% | |
| TCTTCTTACAACGGCATCTA+CGG | - | chr4.4:21339838-21339857 | MS.gene053573:intron | 40.0% | |
| TGATTGAGCTACCATTCAGA+AGG | + | chr4.4:21341137-21341156 | None:intergenic | 40.0% | |
| TTCCAAGGAGAAGAGTTGTT+TGG | + | chr4.4:21337761-21337780 | None:intergenic | 40.0% | |
| TTGTTCAATCCACACACCAT+TGG | + | chr4.4:21337992-21338011 | None:intergenic | 40.0% | |
| ! | AAATATGGTGGAGTCTCTCA+TGG | - | chr4.4:21341479-21341498 | MS.gene053573:CDS | 40.0% |
| ! | ATTTTACCTTTCTCTCCTGG+GGG | - | chr4.4:21341450-21341469 | MS.gene053573:CDS | 40.0% |
| ! | CTCGGATCAATTAGGGATTT+TGG | + | chr4.4:21339416-21339435 | None:intergenic | 40.0% |
| ! | CTTTTGTGAAAGGAAGCTTG+TGG | + | chr4.4:21341347-21341366 | None:intergenic | 40.0% |
| ! | GACACAACTTCTTTGAAGGA+AGG | + | chr4.4:21338030-21338049 | None:intergenic | 40.0% |
| ! | GAGGGAAAAGTTTTCTTGGT+TGG | + | chr4.4:21337731-21337750 | None:intergenic | 40.0% |
| ! | GATGATCGATGGATTTAGAG+CGG | + | chr4.4:21337891-21337910 | None:intergenic | 40.0% |
| ! | GATTTTACCTTTCTCTCCTG+GGG | - | chr4.4:21341449-21341468 | MS.gene053573:CDS | 40.0% |
| ! | GGAAAAGTTTTCTTGGTTGG+TGG | + | chr4.4:21337728-21337747 | None:intergenic | 40.0% |
| ! | GGGAGAGATTTGTTTGTTTG+GGG | + | chr4.4:21339194-21339213 | None:intergenic | 40.0% |
| ! | GGGGAGAGATTTGTTTGTTT+GGG | + | chr4.4:21339195-21339214 | None:intergenic | 40.0% |
| ! | GTGATTTTACCTTTCTCTCC+TGG | - | chr4.4:21341447-21341466 | MS.gene053573:CDS | 40.0% |
| ! | GTTGTTGTCCGATTTTTCCA+AGG | + | chr4.4:21337776-21337795 | None:intergenic | 40.0% |
| ! | TCATGGAAGCATGACACAAA+TGG | + | chr4.4:21339242-21339261 | None:intergenic | 40.0% |
| ! | TCCAGAAATTATGACTTGCG+GGG | + | chr4.4:21340190-21340209 | None:intergenic | 40.0% |
| ! | TCGAGAAGTTGTTGTTGTGT+GGG | + | chr4.4:21337862-21337881 | None:intergenic | 40.0% |
| ! | TCTGGTTTCTTCGACATACT+TGG | + | chr4.4:21339070-21339089 | None:intergenic | 40.0% |
| ! | TGGGGAGAGATTTGTTTGTT+TGG | + | chr4.4:21339196-21339215 | None:intergenic | 40.0% |
| !! | CCTACTTCCACTTTTGTGAA+AGG | + | chr4.4:21341357-21341376 | None:intergenic | 40.0% |
| !! | GAGGAGAGCTTTGTTTGTTT+GGG | + | chr4.4:21339337-21339356 | None:intergenic | 40.0% |
| AAAGCCGGTATATGGTCGTA+TGG | + | chr4.4:21338117-21338136 | None:intergenic | 45.0% | |
| AATTGGTACAGGCATACCCA+TGG | + | chr4.4:21341610-21341629 | None:intergenic | 45.0% | |
| ACCATATTTGTCAAACCCCC+AGG | + | chr4.4:21341468-21341487 | None:intergenic | 45.0% | |
| AGAACAACTTGGAGCGACAA+CGG | + | chr4.4:21337811-21337830 | None:intergenic | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | + | chr4.4:21339816-21339835 | None:intergenic | 45.0% | |
| AGCATGAAGTGTGTGATTCC+TGG | - | chr4.4:21338349-21338368 | MS.gene053573:CDS | 45.0% | |
| ATCAACTGAAGCCAAAGTGG+TGG | + | chr4.4:21338067-21338086 | None:intergenic | 45.0% | |
| ATCCACTGAAATTGACACCG+GGG | + | chr4.4:21340719-21340738 | None:intergenic | 45.0% | |
| ATCGAACTTGAGACCTTGAG+AGG | + | chr4.4:21340693-21340712 | None:intergenic | 45.0% | |
| ATTGGTACAGGCATACCCAT+GGG | + | chr4.4:21341609-21341628 | None:intergenic | 45.0% | |
| CAAAGACCGATTAACCCAAG+GGG | + | chr4.4:21340802-21340821 | None:intergenic | 45.0% | |
| CCAAAGACCGATTAACCCAA+GGG | + | chr4.4:21340803-21340822 | None:intergenic | 45.0% | |
| CCGAGACATAAAAGAGCCTT+GGG | - | chr4.4:21339431-21339450 | MS.gene053573:intron | 45.0% | |
| CGATGATGCTGAGAACAACT+TGG | + | chr4.4:21337822-21337841 | None:intergenic | 45.0% | |
| CTAGGTCTTCCTTATGAGCA+AGG | - | chr4.4:21341219-21341238 | MS.gene053573:intron | 45.0% | |
| CTTCTTACAACGGCATCTAC+GGG | - | chr4.4:21339839-21339858 | MS.gene053573:intron | 45.0% | |
| CTTGAGAGGAACACAATCCA+AGG | + | chr4.4:21340679-21340698 | None:intergenic | 45.0% | |
| CTTGGATTGTGTTCCTCTCA+AGG | - | chr4.4:21340677-21340696 | MS.gene053573:intron | 45.0% | |
| GGAAGGATCATGTGCATAAG+AGG | + | chr4.4:21339034-21339053 | None:intergenic | 45.0% | |
| GTTTGTTTGGGAGCTAGAGT+TGG | + | chr4.4:21339325-21339344 | None:intergenic | 45.0% | |
| TAATTAGGTGGAGAGCGAGT+GGG | + | chr4.4:21339376-21339395 | None:intergenic | 45.0% | |
| TACTTACGGGTCACTCCATA+AGG | - | chr4.4:21340218-21340237 | MS.gene053573:intron | 45.0% | |
| TCCAAAGACCGATTAACCCA+AGG | + | chr4.4:21340804-21340823 | None:intergenic | 45.0% | |
| TCCCCGCAAGTCATAATTTC+TGG | - | chr4.4:21340186-21340205 | MS.gene053573:intron | 45.0% | |
| TCCGAGACATAAAAGAGCCT+TGG | - | chr4.4:21339430-21339449 | MS.gene053573:intron | 45.0% | |
| TCCTGGGGGTTTGACAAATA+TGG | - | chr4.4:21341464-21341483 | MS.gene053573:CDS | 45.0% | |
| TGGGGGTTTGACAAATATGG+TGG | - | chr4.4:21341467-21341486 | MS.gene053573:CDS | 45.0% | |
| TTAATTAGGTGGAGAGCGAG+TGG | + | chr4.4:21339377-21339396 | None:intergenic | 45.0% | |
| TTTAAATTAGGCCCCGCAAG+TGG | - | chr4.4:21340765-21340784 | MS.gene053573:intron | 45.0% | |
| TTTACGCACATGCAACCCAT+GGG | - | chr4.4:21341591-21341610 | MS.gene053573:CDS | 45.0% | |
| TTTATACTTCCCAAGCGGAG+GGG | + | chr4.4:21339272-21339291 | None:intergenic | 45.0% | |
| ! | CCCAAGGCTCTTTTATGTCT+CGG | + | chr4.4:21339434-21339453 | None:intergenic | 45.0% |
| ! | GTCGAGAAGTTGTTGTTGTG+TGG | + | chr4.4:21337863-21337882 | None:intergenic | 45.0% |
| ! | GTTAAGTTGTCGACTGACCT+TGG | + | chr4.4:21341027-21341046 | None:intergenic | 45.0% |
| ! | TACCATTTGCGTTGGTCTGT+TGG | - | chr4.4:21340640-21340659 | MS.gene053573:intron | 45.0% |
| ! | TTTTACGCACATGCAACCCA+TGG | - | chr4.4:21341590-21341609 | MS.gene053573:CDS | 45.0% |
| !! | GGAGGAGAGCTTTGTTTGTT+TGG | + | chr4.4:21339338-21339357 | None:intergenic | 45.0% |
| !! | TGGTCTGTTGGTGTTGACTT+GGG | - | chr4.4:21340652-21340671 | MS.gene053573:intron | 45.0% |
| !! | TTGGTCTGTTGGTGTTGACT+TGG | - | chr4.4:21340651-21340670 | MS.gene053573:intron | 45.0% |
| !! | TTGGTTCTTTTTGCACCGGA+AGG | + | chr4.4:21339051-21339070 | None:intergenic | 45.0% |
| !!! | ATTATAAATTTTTATTTGAT+GGG | + | chr4.4:21339608-21339627 | None:intergenic | 5.0% |
| !!! | TATTAAAATTTACTTTTTTT+TGG | - | chr4.4:21338715-21338734 | MS.gene053573:intron | 5.0% |
| !!! | TATTATAAATTTTTATTTGA+TGG | + | chr4.4:21339609-21339628 | None:intergenic | 5.0% |
| AACAACTTGGAGCGACAACG+GGG | + | chr4.4:21337809-21337828 | None:intergenic | 50.0% | |
| ACTATATGTGCATCCGTGCC+TGG | + | chr4.4:21339491-21339510 | None:intergenic | 50.0% | |
| CACCAACAGACCAACGCAAA+TGG | + | chr4.4:21340645-21340664 | None:intergenic | 50.0% | |
| CCCTTGGGTTAATCGGTCTT+TGG | - | chr4.4:21340800-21340819 | MS.gene053573:intron | 50.0% | |
| CGCCAAACAACTCTTCTCCT+TGG | - | chr4.4:21337756-21337775 | MS.gene053573:CDS | 50.0% | |
| CGTAAAACAAGCCGTGATCG+CGG | + | chr4.4:21341577-21341596 | None:intergenic | 50.0% | |
| CTTGGGAAACGAACCGTCAA+GGG | - | chr4.4:21339448-21339467 | MS.gene053573:intron | 50.0% | |
| GAACAACTTGGAGCGACAAC+GGG | + | chr4.4:21337810-21337829 | None:intergenic | 50.0% | |
| GATCAAAAACCCCTCCGCTT+GGG | - | chr4.4:21339260-21339279 | MS.gene053573:intron | 50.0% | |
| GGGATACCCCTTGGGTTAAT+CGG | - | chr4.4:21340793-21340812 | MS.gene053573:intron | 50.0% | |
| GTCTCAAGTTCGATTCTCCC+CGG | - | chr4.4:21340699-21340718 | MS.gene053573:intron | 50.0% | |
| TGATCAAAAACCCCTCCGCT+TGG | - | chr4.4:21339259-21339278 | MS.gene053573:intron | 50.0% | |
| TTTCTGCAGCCAATGGTGTG+TGG | - | chr4.4:21337980-21337999 | MS.gene053573:CDS | 50.0% | |
| ! | AAGCCTTATCCCACTACGTG+GGG | - | chr4.4:21339660-21339679 | MS.gene053573:intron | 50.0% |
| ! | AAGTTGTCGACTGACCTTGG+AGG | + | chr4.4:21341024-21341043 | None:intergenic | 50.0% |
| ! | ACACACCATTGGCTGCAGAA+AGG | + | chr4.4:21337981-21338000 | None:intergenic | 50.0% |
| ! | AGCAGCGTCTTTGAGGATGA+TGG | + | chr4.4:21337941-21337960 | None:intergenic | 50.0% |
| ! | AGCGGAGGGGTTTTTGATCA+TGG | + | chr4.4:21339259-21339278 | None:intergenic | 50.0% |
| ! | CAAGCCTTATCCCACTACGT+GGG | - | chr4.4:21339659-21339678 | MS.gene053573:intron | 50.0% |
| ! | CGCCGAGGGAAAAGTTTTCT+TGG | + | chr4.4:21337735-21337754 | None:intergenic | 50.0% |
| ! | GATCGATGGATTTAGAGCGG+AGG | + | chr4.4:21337888-21337907 | None:intergenic | 50.0% |
| ! | TTGTTGTTGTGTGGGACCCT+CGG | + | chr4.4:21337854-21337873 | None:intergenic | 50.0% |
| !! | ATTAACCCAAGGGGTATCCC+AGG | + | chr4.4:21340793-21340812 | None:intergenic | 50.0% |
| !! | TTAACCCAAGGGGTATCCCA+GGG | + | chr4.4:21340792-21340811 | None:intergenic | 50.0% |
| !! | TTGGTGTTGACTTGGGACCT+TGG | - | chr4.4:21340659-21340678 | MS.gene053573:intron | 50.0% |
| AACTGAAGCTGCCGCGATCA+CGG | - | chr4.4:21341563-21341582 | MS.gene053573:CDS | 55.0% | |
| CCTTGACGGTTCGTTTCCCA+AGG | + | chr4.4:21339450-21339469 | None:intergenic | 55.0% | |
| CCTTGGGAAACGAACCGTCA+AGG | - | chr4.4:21339447-21339466 | MS.gene053573:intron | 55.0% | |
| CTTATCCCACTACGTGGGGT+CGG | - | chr4.4:21339664-21339683 | MS.gene053573:intron | 55.0% | |
| GTCAAACCCCCAGGAGAGAA+AGG | + | chr4.4:21341459-21341478 | None:intergenic | 55.0% | |
| GTTCTCAGCATCATCGCTGC+TGG | - | chr4.4:21337826-21337845 | MS.gene053573:CDS | 55.0% | |
| ! | CCAAGCCTTATCCCACTACG+TGG | - | chr4.4:21339658-21339677 | MS.gene053573:intron | 55.0% |
| ! | CCACGTAGTGGGATAAGGCT+TGG | + | chr4.4:21339661-21339680 | None:intergenic | 55.0% |
| ! | CTCCCCGGTGTCAATTTCAG+TGG | - | chr4.4:21340714-21340733 | MS.gene053573:intron | 55.0% |
| !! | GTTGGTGGTTGATTCGCCGA+TGG | + | chr4.4:21337713-21337732 | None:intergenic | 55.0% |
| ACTACGTGGGGTCGGCTACA+TGG | - | chr4.4:21339672-21339691 | MS.gene053573:intron | 60.0% | |
| AGAGTTGTTTGGCGACGCCG+AGG | + | chr4.4:21337750-21337769 | None:intergenic | 60.0% | |
| ATGTAGCCGACCCCACGTAG+TGG | + | chr4.4:21339673-21339692 | None:intergenic | 60.0% | |
| CAAGGGAACCTCACCACCCA+TGG | - | chr4.4:21339465-21339484 | MS.gene053573:intron | 60.0% | |
| CCTCAAAGACGCTGCTCCTG+CGG | - | chr4.4:21337945-21337964 | MS.gene053573:CDS | 60.0% | |
| CCTCGCCTTTCTGCAGCCAA+TGG | - | chr4.4:21337973-21337992 | MS.gene053573:CDS | 60.0% | |
| CTCAAAGACGCTGCTCCTGC+GGG | - | chr4.4:21337946-21337965 | MS.gene053573:CDS | 60.0% | |
| GAGTTGTTTGGCGACGCCGA+GGG | + | chr4.4:21337749-21337768 | None:intergenic | 60.0% | |
| GGGTGGTGAGGTTCCCTTGA+CGG | + | chr4.4:21339464-21339483 | None:intergenic | 60.0% | |
| GGTATCCCAGGGTCCACTTG+CGG | + | chr4.4:21340781-21340800 | None:intergenic | 60.0% | |
| GTATCCCAGGGTCCACTTGC+GGG | + | chr4.4:21340780-21340799 | None:intergenic | 60.0% | |
| TATCCCAGGGTCCACTTGCG+GGG | + | chr4.4:21340779-21340798 | None:intergenic | 60.0% | |
| TGGACCCTGGGATACCCCTT+GGG | - | chr4.4:21340785-21340804 | MS.gene053573:intron | 60.0% | |
| TGTAGCCGACCCCACGTAGT+GGG | + | chr4.4:21339672-21339691 | None:intergenic | 60.0% | |
| ! | CCATTGGCTGCAGAAAGGCG+AGG | + | chr4.4:21337976-21337995 | None:intergenic | 60.0% |
| ! | CGACCCCACGTAGTGGGATA+AGG | + | chr4.4:21339666-21339685 | None:intergenic | 60.0% |
| !! | ATCATCGCTGCTGGCTCCGA+GGG | - | chr4.4:21337835-21337854 | MS.gene053573:CDS | 60.0% |
| AAAGACGCTGCTCCTGCGGG+CGG | - | chr4.4:21337949-21337968 | MS.gene053573:CDS | 65.0% | |
| CCGCAGGAGCAGCGTCTTTG+AGG | + | chr4.4:21337948-21337967 | None:intergenic | 65.0% | |
| GAACCTCACCACCCATGGCC+AGG | - | chr4.4:21339470-21339489 | MS.gene053573:intron | 65.0% | |
| GTGCATCCGTGCCTGGCCAT+GGG | + | chr4.4:21339484-21339503 | None:intergenic | 65.0% | |
| GTGGACCCTGGGATACCCCT+TGG | - | chr4.4:21340784-21340803 | MS.gene053573:intron | 65.0% | |
| TCACCACCCATGGCCAGGCA+CGG | - | chr4.4:21339475-21339494 | MS.gene053573:intron | 65.0% | |
| TGTGCATCCGTGCCTGGCCA+TGG | + | chr4.4:21339485-21339504 | None:intergenic | 65.0% | |
| !! | CATCATCGCTGCTGGCTCCG+AGG | - | chr4.4:21337834-21337853 | MS.gene053573:CDS | 65.0% |
| AGGCCCCGCAAGTGGACCCT+GGG | - | chr4.4:21340773-21340792 | MS.gene053573:intron | 70.0% | |
| CATCCGTGCCTGGCCATGGG+TGG | + | chr4.4:21339481-21339500 | None:intergenic | 70.0% | |
| GTGCCTGGCCATGGGTGGTG+AGG | + | chr4.4:21339476-21339495 | None:intergenic | 70.0% | |
| TAGGCCCCGCAAGTGGACCC+TGG | - | chr4.4:21340772-21340791 | MS.gene053573:intron | 70.0% | |
| GAAAGGCGAGGTCCGCCCGC+AGG | + | chr4.4:21337964-21337983 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 21337703 | 21341743 | 21337703 | ID=MS.gene053573 |
| chr4.4 | mRNA | 21337703 | 21341743 | 21337703 | ID=MS.gene053573.t1;Parent=MS.gene053573 |
| chr4.4 | exon | 21341348 | 21341743 | 21341348 | ID=MS.gene053573.t1.exon1;Parent=MS.gene053573.t1 |
| chr4.4 | CDS | 21341348 | 21341743 | 21341348 | ID=cds.MS.gene053573.t1;Parent=MS.gene053573.t1 |
| chr4.4 | exon | 21338302 | 21338497 | 21338302 | ID=MS.gene053573.t1.exon2;Parent=MS.gene053573.t1 |
| chr4.4 | CDS | 21338302 | 21338497 | 21338302 | ID=cds.MS.gene053573.t1;Parent=MS.gene053573.t1 |
| chr4.4 | exon | 21337703 | 21338223 | 21337703 | ID=MS.gene053573.t1.exon3;Parent=MS.gene053573.t1 |
| chr4.4 | CDS | 21337703 | 21338223 | 21337703 | ID=cds.MS.gene053573.t1;Parent=MS.gene053573.t1 |
| Gene Sequence |
| Protein sequence |
