Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053923.t1 | KEH17733.1 | 93.7 | 1054 | 31 | 3 | 1 | 1022 | 1 | 1051 | 0.00E+00 | 1820.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053923.t1 | Q8GVE8 | 71.4 | 1054 | 247 | 5 | 1 | 1022 | 1 | 1032 | 0.0e+00 | 1450.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053923.t1 | A0A072TLJ0 | 93.7 | 1054 | 31 | 3 | 1 | 1022 | 1 | 1051 | 0.0e+00 | 1820.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053923 | MS.gene032250 | PPI |
| MS.gene060602 | MS.gene053923 | PPI |
| MS.gene63756 | MS.gene053923 | PPI |
| MS.gene053923 | MS.gene54826 | PPI |
| MS.gene053923 | MS.gene73810 | PPI |
| MS.gene053923 | MS.gene026844 | PPI |
| MS.gene053923 | MS.gene060183 | PPI |
| MS.gene045495 | MS.gene053923 | PPI |
| MS.gene053923 | MS.gene043538 | PPI |
| MS.gene053923 | MS.gene006687 | PPI |
| MS.gene031613 | MS.gene053923 | PPI |
| MS.gene007929 | MS.gene053923 | PPI |
| MS.gene36018 | MS.gene053923 | PPI |
| MS.gene053923 | MS.gene028781 | PPI |
| MS.gene053923 | MS.gene34261 | PPI |
| MS.gene31351 | MS.gene053923 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053923.t1 | MTR_0002s0890 | 94.877 | 1054 | 19 | 4 | 1 | 1022 | 1 | 1051 | 0.0 | 2042 |
| MS.gene053923.t1 | MTR_1g094010 | 70.623 | 674 | 130 | 10 | 1 | 637 | 1 | 643 | 0.0 | 882 |
| MS.gene053923.t1 | MTR_1g094000 | 86.257 | 342 | 47 | 0 | 681 | 1022 | 1 | 342 | 0.0 | 603 |
| MS.gene053923.t1 | MTR_8g463920 | 47.049 | 627 | 279 | 7 | 430 | 1022 | 360 | 967 | 7.80e-180 | 549 |
| MS.gene053923.t1 | MTR_8g463920 | 45.989 | 187 | 100 | 1 | 105 | 290 | 155 | 341 | 4.59e-43 | 170 |
| MS.gene053923.t1 | MTR_4g079860 | 46.411 | 627 | 283 | 7 | 430 | 1022 | 359 | 966 | 3.09e-179 | 547 |
| MS.gene053923.t1 | MTR_4g079860 | 36.042 | 283 | 145 | 6 | 59 | 305 | 77 | 359 | 7.79e-44 | 173 |
| MS.gene053923.t1 | MTR_2g076670 | 46.486 | 626 | 282 | 7 | 431 | 1022 | 360 | 966 | 1.78e-176 | 540 |
| MS.gene053923.t1 | MTR_2g076670 | 45.263 | 190 | 103 | 1 | 102 | 290 | 151 | 340 | 1.72e-43 | 172 |
| MS.gene053923.t1 | MTR_2g092930 | 45.774 | 627 | 287 | 7 | 430 | 1022 | 359 | 966 | 1.08e-173 | 533 |
| MS.gene053923.t1 | MTR_2g092930 | 37.457 | 291 | 146 | 6 | 59 | 313 | 77 | 367 | 1.25e-45 | 178 |
| MS.gene053923.t1 | MTR_8g463920 | 51.233 | 527 | 235 | 6 | 430 | 953 | 360 | 867 | 6.95e-169 | 518 |
| MS.gene053923.t1 | MTR_8g463920 | 45.989 | 187 | 100 | 1 | 105 | 290 | 155 | 341 | 3.73e-43 | 170 |
| MS.gene053923.t1 | MTR_1g009850 | 34.420 | 491 | 199 | 10 | 534 | 1022 | 1 | 370 | 1.44e-67 | 231 |
| MS.gene053923.t1 | MTR_7g060030 | 51.471 | 204 | 25 | 3 | 45 | 248 | 1 | 130 | 3.61e-51 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053923.t1 | AT1G68750 | 72.676 | 1054 | 234 | 6 | 1 | 1022 | 1 | 1032 | 0.0 | 1516 |
| MS.gene053923.t1 | AT2G42600 | 46.720 | 625 | 283 | 6 | 430 | 1022 | 357 | 963 | 1.69e-178 | 545 |
| MS.gene053923.t1 | AT2G42600 | 36.111 | 288 | 156 | 6 | 23 | 283 | 48 | 334 | 3.65e-43 | 171 |
| MS.gene053923.t1 | AT2G42600 | 46.720 | 625 | 283 | 6 | 430 | 1022 | 357 | 963 | 1.69e-178 | 545 |
| MS.gene053923.t1 | AT2G42600 | 36.111 | 288 | 156 | 6 | 23 | 283 | 48 | 334 | 3.65e-43 | 171 |
| MS.gene053923.t1 | AT2G42600 | 46.720 | 625 | 283 | 6 | 430 | 1022 | 357 | 963 | 1.69e-178 | 545 |
| MS.gene053923.t1 | AT2G42600 | 36.111 | 288 | 156 | 6 | 23 | 283 | 48 | 334 | 3.65e-43 | 171 |
| MS.gene053923.t1 | AT1G53310 | 45.920 | 625 | 287 | 6 | 431 | 1022 | 361 | 967 | 2.22e-175 | 538 |
| MS.gene053923.t1 | AT1G53310 | 41.518 | 224 | 124 | 3 | 81 | 302 | 131 | 349 | 3.99e-44 | 174 |
| MS.gene053923.t1 | AT1G53310 | 45.920 | 625 | 287 | 6 | 431 | 1022 | 361 | 967 | 2.22e-175 | 538 |
| MS.gene053923.t1 | AT1G53310 | 41.518 | 224 | 124 | 3 | 81 | 302 | 131 | 349 | 3.99e-44 | 174 |
| MS.gene053923.t1 | AT1G53310 | 45.920 | 625 | 287 | 6 | 431 | 1022 | 361 | 967 | 2.22e-175 | 538 |
| MS.gene053923.t1 | AT1G53310 | 41.518 | 224 | 124 | 3 | 81 | 302 | 131 | 349 | 3.99e-44 | 174 |
| MS.gene053923.t1 | AT3G14940 | 46.571 | 627 | 281 | 8 | 431 | 1022 | 361 | 968 | 8.90e-175 | 536 |
| MS.gene053923.t1 | AT3G14940 | 42.857 | 224 | 121 | 3 | 81 | 302 | 131 | 349 | 3.93e-46 | 180 |
| MS.gene053923.t1 | AT3G14940 | 46.571 | 627 | 281 | 8 | 431 | 1022 | 361 | 968 | 8.90e-175 | 536 |
| MS.gene053923.t1 | AT3G14940 | 42.857 | 224 | 121 | 3 | 81 | 302 | 131 | 349 | 3.93e-46 | 180 |
Find 263 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACTGGATCTTCCTATT+TGG | 0.142042 | 5.3:+42734303 | None:intergenic |
| TGATGCAATTACCAAGTATT+TGG | 0.149299 | 5.3:-42733631 | MS.gene053923:CDS |
| CATCCAAGAGCCAAACTTTA+TGG | 0.170496 | 5.3:+42736512 | None:intergenic |
| CCTCTTCCCTTTAAGCTCTT+TGG | 0.192525 | 5.3:+42733557 | None:intergenic |
| AATTACCAAGTATTTGGATA+TGG | 0.228014 | 5.3:-42733625 | MS.gene053923:CDS |
| CTTACAGTTTGTGGAGAATT+AGG | 0.236647 | 5.3:-42732791 | MS.gene053923:CDS |
| TTGAAGTAGGTGAGAAATTC+TGG | 0.237679 | 5.3:+42730987 | None:intergenic |
| CCCGGCAGCAATACCATTAA+TGG | 0.242857 | 5.3:+42730416 | None:intergenic |
| TTCTTAACCAAAGAGCTTAA+AGG | 0.244386 | 5.3:-42733564 | MS.gene053923:CDS |
| TTGATGCATGCAGCATCTTT+TGG | 0.245556 | 5.3:-42737038 | MS.gene053923:intron |
| CCAGGAAGATGAGGGAGTTT+TGG | 0.253716 | 5.3:+42734266 | None:intergenic |
| AGACCTGATTGAGATGGTTT+TGG | 0.259081 | 5.3:-42730721 | MS.gene053923:CDS |
| GCTACCTTTGCTGTCACATT+TGG | 0.290322 | 5.3:+42736468 | None:intergenic |
| CTCCAAAAGCTTCTGAAAAC+TGG | 0.293397 | 5.3:+42734289 | None:intergenic |
| ATCACCATTTCTCGATCTTC+AGG | 0.297580 | 5.3:+42736989 | None:intergenic |
| AAAACTGGATCTTCCTATTT+GGG | 0.300543 | 5.3:+42734304 | None:intergenic |
| GTCCTCCTTATCACCATTAA+TGG | 0.305564 | 5.3:-42730429 | MS.gene053923:CDS |
| TGAAACAACCGACCAGCTTT+TGG | 0.306504 | 5.3:-42733965 | MS.gene053923:CDS |
| CCAAAACTCCCTCATCTTCC+TGG | 0.311533 | 5.3:-42734266 | MS.gene053923:CDS |
| CTACCTTTGCTGTCACATTT+GGG | 0.315237 | 5.3:+42736469 | None:intergenic |
| AGTAAAGAAGCCGTCTGATT+TGG | 0.315756 | 5.3:+42734778 | None:intergenic |
| GAGATGGTGCAGGCCAAGTT+TGG | 0.316061 | 5.3:-42731173 | MS.gene053923:CDS |
| ATCCGTAGAGTTTCTACCTT+TGG | 0.323193 | 5.3:-42733782 | MS.gene053923:CDS |
| TTGCAAAGAGTACGGTATTA+AGG | 0.329108 | 5.3:-42731919 | MS.gene053923:CDS |
| ATGGTTGGGTATTCTGATTC+TGG | 0.332647 | 5.3:-42732008 | MS.gene053923:CDS |
| TCTCCTCTGTTATGAATCTA+TGG | 0.333593 | 5.3:-42733935 | MS.gene053923:intron |
| TTGAGCTCGCTGAACTTGTT+GGG | 0.334363 | 5.3:+42734393 | None:intergenic |
| TTTCGAGTTTCTGCAGAGAT+AGG | 0.334368 | 5.3:-42733023 | MS.gene053923:CDS |
| ACTTGCACTCCCATAAAGTT+TGG | 0.348788 | 5.3:-42736522 | MS.gene053923:CDS |
| TAACCTCTTGGTGTCCGTTA+TGG | 0.349444 | 5.3:+42732113 | None:intergenic |
| TTTGTCAGAGCACCCCTTCA+TGG | 0.350130 | 5.3:+42735823 | None:intergenic |
| AGCTTCTTCTAAATTCATCT+TGG | 0.357923 | 5.3:+42737499 | None:intergenic |
| TCTTAACCAAAGAGCTTAAA+GGG | 0.359246 | 5.3:-42733563 | MS.gene053923:CDS |
| TGGCAACCGACCTCTATATT+CGG | 0.359485 | 5.3:-42735874 | MS.gene053923:CDS |
| TTCGTTCTTCCTGCTTGGCT+TGG | 0.362195 | 5.3:-42730837 | MS.gene053923:CDS |
| TTGTTTGCAGAATCCCAAAT+AGG | 0.365790 | 5.3:-42734317 | MS.gene053923:CDS |
| ATGAGCTCTAGCTGGGAGTT+TGG | 0.366459 | 5.3:+42734750 | None:intergenic |
| GTTTGCAAACTGTATTATAA+AGG | 0.369503 | 5.3:+42737327 | None:intergenic |
| CTTCCTGCTTGGCTTGGAGT+TGG | 0.379581 | 5.3:-42730831 | MS.gene053923:CDS |
| GCTTGGCTTGGAGTTGGAGC+AGG | 0.381867 | 5.3:-42730825 | MS.gene053923:CDS |
| TGGGCGCTTTACCGCTGCTT+GGG | 0.387841 | 5.3:-42731976 | MS.gene053923:CDS |
| CTGGGCGCTTTACCGCTGCT+TGG | 0.395892 | 5.3:-42731977 | MS.gene053923:CDS |
| CTCTAGCAATCTTGTGGAGC+TGG | 0.398924 | 5.3:-42733842 | MS.gene053923:intron |
| ATCAAGTGTTTCAGCATGTC+TGG | 0.402474 | 5.3:+42733650 | None:intergenic |
| ACTTCAACTGTGAGCAATGC+TGG | 0.407713 | 5.3:-42734437 | MS.gene053923:CDS |
| CTCCCATAAAGTTTGGCTCT+TGG | 0.409831 | 5.3:-42736515 | MS.gene053923:CDS |
| TTCCCGAGGACAATTCTATA+AGG | 0.410709 | 5.3:+42734236 | None:intergenic |
| CCAGATTCGTTCTTCCTGCT+TGG | 0.411430 | 5.3:-42730842 | MS.gene053923:CDS |
| TGGCGGAGGCCCAACTTATC+TGG | 0.413350 | 5.3:-42731859 | MS.gene053923:CDS |
| CCAAGCAGGAAGAACGAATC+TGG | 0.414731 | 5.3:+42730842 | None:intergenic |
| ATTACCAAGTATTTGGATAT+GGG | 0.416538 | 5.3:-42733624 | MS.gene053923:CDS |
| TTGGCACATGAAATTCTAGA+AGG | 0.416667 | 5.3:-42735791 | MS.gene053923:intron |
| TATGAGACAGGGAGGAATTG+AGG | 0.416965 | 5.3:-42737564 | MS.gene053923:CDS |
| TTCCCAAAACCATCTCAATC+AGG | 0.417745 | 5.3:+42730718 | None:intergenic |
| ATTGAGCTCGCTGAACTTGT+TGG | 0.419020 | 5.3:+42734392 | None:intergenic |
| ATCCAAGAGCCAAACTTTAT+GGG | 0.419228 | 5.3:+42736513 | None:intergenic |
| GGGAGTATTGGTCGTGGCGG+AGG | 0.421197 | 5.3:-42731873 | MS.gene053923:CDS |
| TGGGGCGGCTACCTATGTTT+AGG | 0.424115 | 5.3:+42730934 | None:intergenic |
| TGTTGGGGATGCATGACTAT+TGG | 0.424180 | 5.3:+42734409 | None:intergenic |
| AGATGGTGCAGGCCAAGTTT+GGG | 0.425318 | 5.3:-42731172 | MS.gene053923:CDS |
| TGTTGATTAGAGTTGGAAGA+AGG | 0.430928 | 5.3:+42734359 | None:intergenic |
| AACCCTTCGGTCTACTGAGC+AGG | 0.432317 | 5.3:-42731198 | MS.gene053923:CDS |
| TATAATGACCGACCTGATCT+TGG | 0.436771 | 5.3:-42737013 | MS.gene053923:CDS |
| TGGAGCCTATGTGATCTCTA+TGG | 0.438799 | 5.3:-42732988 | MS.gene053923:CDS |
| CATAAAGTTTGGCTCTTGGA+TGG | 0.439041 | 5.3:-42736511 | MS.gene053923:CDS |
| GAAGGTAAATGAGCTCTAGC+TGG | 0.439845 | 5.3:+42734742 | None:intergenic |
| GTTGTGGCCTTTCTTCTCGT+GGG | 0.441637 | 5.3:+42730915 | None:intergenic |
| CTCTGACAAATTGTCTAGAT+TGG | 0.442124 | 5.3:-42735810 | MS.gene053923:CDS |
| AAGAAGTTGTTGATTAGAGT+TGG | 0.442500 | 5.3:+42734352 | None:intergenic |
| ACCATTAATGGTATTGCTGC+CGG | 0.442827 | 5.3:-42730417 | MS.gene053923:CDS |
| CAGAAACTCGAAACGTATCT+AGG | 0.443067 | 5.3:+42733033 | None:intergenic |
| GACACCTTCGTGCCATTCCC+TGG | 0.444073 | 5.3:-42730884 | MS.gene053923:CDS |
| TGAGAGAGATAACTTCAATA+TGG | 0.445525 | 5.3:-42736879 | MS.gene053923:CDS |
| ACAAACTTCTGCAGAACAAC+AGG | 0.445868 | 5.3:-42730566 | MS.gene053923:CDS |
| CTCCACTTGCAACATGTTCA+AGG | 0.446819 | 5.3:+42730500 | None:intergenic |
| AGAAAGGCCACAACAGGAAT+CGG | 0.447845 | 5.3:-42730906 | MS.gene053923:CDS |
| TTTGACGGACTTCTATTCTC+TGG | 0.450218 | 5.3:+42734805 | None:intergenic |
| GACTGAATAGCCAGATAAGT+TGG | 0.452157 | 5.3:+42731849 | None:intergenic |
| GCTCATTTACCTTCTTGTGC+TGG | 0.452746 | 5.3:-42734733 | MS.gene053923:intron |
| TCTGATTCTGGTAAAGATGC+TGG | 0.453942 | 5.3:-42731996 | MS.gene053923:CDS |
| ACGAGAAGAAAGGCCACAAC+AGG | 0.454693 | 5.3:-42730912 | MS.gene053923:CDS |
| ATTCTATAAGGAGCAATTCC+AGG | 0.458187 | 5.3:+42734248 | None:intergenic |
| TTGAAAGGTGCGTGCGAGAA+AGG | 0.458305 | 5.3:-42730801 | MS.gene053923:CDS |
| TCTAGGACCTCTTTAACATC+TGG | 0.459437 | 5.3:+42733050 | None:intergenic |
| TACAGTCATCGTCGAAGCCT+TGG | 0.459975 | 5.3:+42737792 | None:intergenic |
| GACGATGACTGTAAGTTGCT+TGG | 0.460688 | 5.3:-42737782 | MS.gene053923:CDS |
| TTGAGTCCATGCGAATATCC+AGG | 0.461942 | 5.3:+42730866 | None:intergenic |
| GAAAACTTCTATCAATAGAT+TGG | 0.465852 | 5.3:-42732159 | MS.gene053923:CDS |
| GGAGAAGAGGTTCCAAAAGC+TGG | 0.468802 | 5.3:+42733953 | None:intergenic |
| AATCCTCACGTTTAGTCTCA+TGG | 0.468993 | 5.3:+42734836 | None:intergenic |
| TGTTTGTGGCAACCCAAACT+TGG | 0.470943 | 5.3:+42731160 | None:intergenic |
| GCCTATATGCAGGTCATGGT+TGG | 0.471881 | 5.3:-42732023 | MS.gene053923:intron |
| TGAGGAGATGGCAGAGCTGT+TGG | 0.473716 | 5.3:-42737546 | MS.gene053923:CDS |
| GGCAACCGACCTCTATATTC+GGG | 0.474992 | 5.3:-42735873 | MS.gene053923:CDS |
| AAGATTGTCACCGTTATTTG+TGG | 0.475407 | 5.3:-42730594 | MS.gene053923:CDS |
| TTATAATACAGTTTGCAAAC+AGG | 0.476153 | 5.3:-42737324 | MS.gene053923:intron |
| AATGAAGCTTGACTTGCGTC+AGG | 0.477603 | 5.3:-42733750 | MS.gene053923:intron |
| ATTAAGGTTACTTTATTCCA+TGG | 0.479859 | 5.3:-42731903 | MS.gene053923:CDS |
| GATGCACGTCTTACAGTTTG+TGG | 0.480244 | 5.3:-42732800 | MS.gene053923:CDS |
| AGTCAGCAATGCTTTAAAGA+AGG | 0.480964 | 5.3:-42736657 | MS.gene053923:intron |
| TGTTGTGGCCTTTCTTCTCG+TGG | 0.483275 | 5.3:+42730914 | None:intergenic |
| ATAGTTGGTGAGAAGTTATC+CGG | 0.483396 | 5.3:+42730383 | None:intergenic |
| GCTATTCAGTCCCAGCCACC+TGG | 0.483772 | 5.3:-42731837 | MS.gene053923:CDS |
| GTGAAGGACCTCAGAGGAGC+TGG | 0.484164 | 5.3:-42732193 | MS.gene053923:CDS |
| CTTTATATGTTTGTATTGCA+AGG | 0.484746 | 5.3:+42737163 | None:intergenic |
| GCCACACCTCAAGCAGAGCT+TGG | 0.486352 | 5.3:-42730960 | MS.gene053923:CDS |
| CAATACCATTAATGGTGATA+AGG | 0.487204 | 5.3:+42730424 | None:intergenic |
| TCCTATCTCACCTCTATACT+AGG | 0.489136 | 5.3:+42733522 | None:intergenic |
| CGATCTTCAGGACCAAGATC+AGG | 0.489148 | 5.3:+42737001 | None:intergenic |
| CCATTACAGAGCCAGGTGGC+TGG | 0.489803 | 5.3:+42731826 | None:intergenic |
| AAGAACTTGGTCGTCAACTA+AGG | 0.489824 | 5.3:-42730638 | MS.gene053923:CDS |
| CAATCTTGTGGAGCTGGAGC+TGG | 0.490881 | 5.3:-42733836 | MS.gene053923:CDS |
| GCACCAGGGATGTCGAGTCT+TGG | 0.491641 | 5.3:+42734593 | None:intergenic |
| AGATTGTCACCGTTATTTGT+GGG | 0.493987 | 5.3:-42730593 | MS.gene053923:CDS |
| AGAAATGGTGATAGAAGATC+TGG | 0.494628 | 5.3:-42736978 | MS.gene053923:intron |
| GAGTGCTTGTAATATGAGAC+AGG | 0.494896 | 5.3:-42737576 | MS.gene053923:CDS |
| AATTTCCTCTAGCAATCTTG+TGG | 0.496853 | 5.3:-42733848 | MS.gene053923:intron |
| CCATTAATGGTATTGCTGCC+GGG | 0.497379 | 5.3:-42730416 | MS.gene053923:CDS |
| TTCGAGTTTCTGCAGAGATA+GGG | 0.499286 | 5.3:-42733022 | MS.gene053923:CDS |
| ACAGGGAGGAATTGAGGAGA+TGG | 0.500077 | 5.3:-42737558 | MS.gene053923:CDS |
| AAATCCCATCTTGCAAAAGC+TGG | 0.501455 | 5.3:+42737360 | None:intergenic |
| CTCCTTATAGAATTGTCCTC+GGG | 0.504346 | 5.3:-42734238 | MS.gene053923:CDS |
| CCTATATGCAGGTCATGGTT+GGG | 0.504623 | 5.3:-42732022 | MS.gene053923:intron |
| TTTATGGGAGTGCAAGTCAA+TGG | 0.506481 | 5.3:+42736528 | None:intergenic |
| CATGGCCGTGGAGGGAGTAT+TGG | 0.506592 | 5.3:-42731885 | MS.gene053923:CDS |
| CCTCGGGAATGTAAAAGATA+AGG | 0.509108 | 5.3:-42734222 | MS.gene053923:intron |
| TGGTCCTGAAGATCGAGAAA+TGG | 0.509757 | 5.3:-42736993 | MS.gene053923:CDS |
| ATGGTATTGCTGCCGGGATG+AGG | 0.512914 | 5.3:-42730410 | MS.gene053923:CDS |
| TATCATTGCAGGGAACCCTT+CGG | 0.513049 | 5.3:-42731211 | MS.gene053923:intron |
| CCAGCCACCTGGCTCTGTAA+TGG | 0.513295 | 5.3:-42731826 | MS.gene053923:intron |
| TTTGTCGTGCCCACAAATAA+CGG | 0.514471 | 5.3:+42730584 | None:intergenic |
| ATGAGACTAAACGTGAGGAT+TGG | 0.515240 | 5.3:-42734834 | MS.gene053923:CDS |
| ATAAAGTTTGGCTCTTGGAT+GGG | 0.515444 | 5.3:-42736510 | MS.gene053923:CDS |
| GAGATTTGAGTTATCCATGA+AGG | 0.515713 | 5.3:-42735837 | MS.gene053923:CDS |
| GGAGTTGGAGCAGGTTTGAA+AGG | 0.516727 | 5.3:-42730816 | MS.gene053923:CDS |
| CGACCTCTATATTCGGGAAG+TGG | 0.517085 | 5.3:-42735867 | MS.gene053923:CDS |
| TGCAAGTGGAGATACTTAAG+AGG | 0.518732 | 5.3:-42730488 | MS.gene053923:CDS |
| CATTACAGAGCCAGGTGGCT+GGG | 0.519537 | 5.3:+42731827 | None:intergenic |
| GCTCCAACTCCAAGCCAAGC+AGG | 0.520197 | 5.3:+42730828 | None:intergenic |
| TAGCAGTTGATGTACATTTG+AGG | 0.521119 | 5.3:+42732965 | None:intergenic |
| TATCCACTTCCCGAATATAG+AGG | 0.522113 | 5.3:+42735864 | None:intergenic |
| GGTTGCTCCAGATGTTAAAG+AGG | 0.523565 | 5.3:-42733057 | MS.gene053923:CDS |
| ACTAGTTCCTCCTAGTATAG+AGG | 0.523919 | 5.3:-42733532 | MS.gene053923:intron |
| CAATACTCCCTCCACGGCCA+TGG | 0.524087 | 5.3:+42731886 | None:intergenic |
| ATATGGGTACATACAGTGAA+TGG | 0.527194 | 5.3:-42733608 | MS.gene053923:CDS |
| GAGTTGGAAGAAGGAGAGCG+TGG | 0.527361 | 5.3:+42734368 | None:intergenic |
| CTAGCTTCATCCACTGGAGT+AGG | 0.528935 | 5.3:+42736829 | None:intergenic |
| GCTCTAGCTGGGAGTTTGGA+TGG | 0.529054 | 5.3:+42734754 | None:intergenic |
| GCTCCTTATAGAATTGTCCT+CGG | 0.530711 | 5.3:-42734239 | MS.gene053923:CDS |
| TAGAGTTTCTACCTTTGGCA+TGG | 0.532015 | 5.3:-42733777 | MS.gene053923:CDS |
| GTTACTTTATTCCATGGCCG+TGG | 0.532100 | 5.3:-42731897 | MS.gene053923:CDS |
| TCCTCTCTTTGAAACTGTGA+AGG | 0.532310 | 5.3:-42732209 | MS.gene053923:CDS |
| AGTTGTCTGACAGATGTTTG+TGG | 0.533030 | 5.3:+42731146 | None:intergenic |
| AGATTTGAGTTATCCATGAA+GGG | 0.534361 | 5.3:-42735836 | MS.gene053923:CDS |
| CCAAAGAGCTTAAAGGGAAG+AGG | 0.535345 | 5.3:-42733557 | MS.gene053923:CDS |
| GAAAGTCCACTCTTTGTACA+TGG | 0.535544 | 5.3:+42730758 | None:intergenic |
| TCCAAGCTCTGCTTGAGGTG+TGG | 0.536208 | 5.3:+42730959 | None:intergenic |
| CTTTATTCCATGGCCGTGGA+GGG | 0.536693 | 5.3:-42731893 | MS.gene053923:CDS |
| TGTACCCATATCCAAATACT+TGG | 0.536867 | 5.3:+42733620 | None:intergenic |
| AGAATTAGGAAGAGAATGTC+CGG | 0.540328 | 5.3:-42732777 | MS.gene053923:CDS |
| ACTGAATAGCCAGATAAGTT+GGG | 0.541395 | 5.3:+42731850 | None:intergenic |
| TAGCCGCCCCACGAGAAGAA+AGG | 0.541590 | 5.3:-42730922 | MS.gene053923:CDS |
| ACTTTATTCCATGGCCGTGG+AGG | 0.542132 | 5.3:-42731894 | MS.gene053923:CDS |
| GTCTACTGAGCAGGGAGAGA+TGG | 0.542351 | 5.3:-42731189 | MS.gene053923:CDS |
| ATCAACAACTTCTTGCTCAA+AGG | 0.542695 | 5.3:-42734343 | MS.gene053923:CDS |
| TCCACTTGCAACATGTTCAA+GGG | 0.543143 | 5.3:+42730501 | None:intergenic |
| ATGTGTCCAACATAGGCTTC+GGG | 0.544144 | 5.3:-42732236 | MS.gene053923:intron |
| TGGCCTTTCTTCTCGTGGGG+CGG | 0.546370 | 5.3:+42730919 | None:intergenic |
| TCCCTTGAACATGTTGCAAG+TGG | 0.546576 | 5.3:-42730502 | MS.gene053923:CDS |
| CTGATTCTGGTAAAGATGCT+GGG | 0.546993 | 5.3:-42731995 | MS.gene053923:CDS |
| ACAGAGAACTCGTAGACGAT+TGG | 0.547439 | 5.3:-42734037 | MS.gene053923:CDS |
| CTCCCTGCTCAGTAGACCGA+AGG | 0.549087 | 5.3:+42731195 | None:intergenic |
| CATCCAAGACTCGACATCCC+TGG | 0.552104 | 5.3:-42734596 | MS.gene053923:CDS |
| CCAGCTCTAGCTTCATCCAC+TGG | 0.553320 | 5.3:+42736823 | None:intergenic |
| CATAATAGACCTGATTGAGA+TGG | 0.555044 | 5.3:-42730727 | MS.gene053923:CDS |
| GATTCATAACAGAGGAGAAG+AGG | 0.556501 | 5.3:+42733940 | None:intergenic |
| ATGTTCAAGGGATTGAGAAA+CGG | 0.557412 | 5.3:+42730513 | None:intergenic |
| GCCTTGGAAGGACATTTCCT+CGG | 0.558046 | 5.3:+42737808 | None:intergenic |
| TGAGCTCGCTGAACTTGTTG+GGG | 0.558745 | 5.3:+42734394 | None:intergenic |
| CAATCAGGTCTATTATGCAT+TGG | 0.559332 | 5.3:+42730733 | None:intergenic |
| GGAACTTTACAAAGCTCAAG+AGG | 0.559726 | 5.3:-42731955 | MS.gene053923:CDS |
| ACTTGATTGTAATCAGCACC+AGG | 0.561220 | 5.3:+42734578 | None:intergenic |
| TAACTCACCATTACAGAGCC+AGG | 0.562724 | 5.3:+42731819 | None:intergenic |
| TTGTGGCCTTTCTTCTCGTG+GGG | 0.562751 | 5.3:+42730916 | None:intergenic |
| AGAGCTGTTGGAGAAGCAGT+TGG | 0.563366 | 5.3:-42737534 | MS.gene053923:CDS |
| GTTGTTTCATAGTAATCAGA+AGG | 0.564434 | 5.3:+42733979 | None:intergenic |
| ACATTGTGGAGCAGTCACTC+TGG | 0.564696 | 5.3:-42736706 | MS.gene053923:CDS |
| CCATTCCCTGGATATTCGCA+TGG | 0.564946 | 5.3:-42730872 | MS.gene053923:CDS |
| GGAGCAATTCCAGGAAGATG+AGG | 0.566139 | 5.3:+42734257 | None:intergenic |
| TTACAATCAAGTCAATATCA+AGG | 0.566345 | 5.3:-42734567 | MS.gene053923:intron |
| GGAGTGCAAGTCAATGGAAG+TGG | 0.566520 | 5.3:+42736534 | None:intergenic |
| AGACTGTACTGCGGTAACAC+TGG | 0.569328 | 5.3:+42731018 | None:intergenic |
| TCTTCTCGAGGTGGTAGAGG+TGG | 0.570281 | 5.3:+42731083 | None:intergenic |
| GCCGAGGAAATGTCCTTCCA+AGG | 0.571295 | 5.3:-42737809 | MS.gene053923:CDS |
| CTGACTCGACGTAAATAATG+AGG | 0.573363 | 5.3:+42736674 | None:intergenic |
| GAGCAATTCCAGGAAGATGA+GGG | 0.576413 | 5.3:+42734258 | None:intergenic |
| TCCTTCACAGTTTCAAAGAG+AGG | 0.577694 | 5.3:+42732208 | None:intergenic |
| GTACGTCGATTAATTTGTGT+GGG | 0.579325 | 5.3:+42737185 | None:intergenic |
| AAGGTAAATGAGCTCTAGCT+GGG | 0.581517 | 5.3:+42734743 | None:intergenic |
| AAGTTTGGCTCTTGGATGGG+AGG | 0.585622 | 5.3:-42736507 | MS.gene053923:CDS |
| TGCCAAAGGTAGAAACTCTA+CGG | 0.585890 | 5.3:+42733780 | None:intergenic |
| AAGGTGTCCGATTCCTGTTG+TGG | 0.590609 | 5.3:+42730899 | None:intergenic |
| TGCAGTAGAGCTCTTACAGA+AGG | 0.591503 | 5.3:-42732822 | MS.gene053923:CDS |
| TCAGAGAAGAGACAAGAACT+TGG | 0.593854 | 5.3:-42730651 | MS.gene053923:CDS |
| TTAGGAAGAGAATGTCCGGC+TGG | 0.594796 | 5.3:-42732773 | MS.gene053923:CDS |
| GGTACGTCGATTAATTTGTG+TGG | 0.595875 | 5.3:+42737184 | None:intergenic |
| GTGGCTGCTTGCAAAGAGTA+CGG | 0.595935 | 5.3:-42731927 | MS.gene053923:CDS |
| CCATGCGAATATCCAGGGAA+TGG | 0.598516 | 5.3:+42730872 | None:intergenic |
| CCAGTGGATGAAGCTAGAGC+TGG | 0.602228 | 5.3:-42736823 | MS.gene053923:intron |
| ACGATTGGAACTGCTTCTAG+AGG | 0.605318 | 5.3:-42734022 | MS.gene053923:CDS |
| CAAAGCTCAAGAGGATGTAG+TGG | 0.607111 | 5.3:-42731946 | MS.gene053923:CDS |
| TTTGTAAAGTTCCCAAGCAG+CGG | 0.609705 | 5.3:+42731965 | None:intergenic |
| TGAGCAGGGAGAGATGGTGC+AGG | 0.610093 | 5.3:-42731183 | MS.gene053923:CDS |
| TACCATTAATGGTGATAAGG+AGG | 0.611172 | 5.3:+42730427 | None:intergenic |
| GGAGCTGGTGTGTTAGCTGA+TGG | 0.612816 | 5.3:-42733821 | MS.gene053923:CDS |
| AGGTGTGGCCTCATTGAAGT+AGG | 0.612841 | 5.3:+42730974 | None:intergenic |
| ACCCTTCGGTCTACTGAGCA+GGG | 0.612866 | 5.3:-42731197 | MS.gene053923:CDS |
| AGATGGACTTACGTTCCAGC+CGG | 0.614237 | 5.3:+42732758 | None:intergenic |
| GAGCTTGGATTCCTAAACAT+AGG | 0.618041 | 5.3:-42730945 | MS.gene053923:CDS |
| TCATGTGTACCAGCACAAGA+AGG | 0.618233 | 5.3:+42734724 | None:intergenic |
| TAAAAGCCATGTACAAAGAG+TGG | 0.619720 | 5.3:-42730764 | MS.gene053923:CDS |
| TGAGTCCATGCGAATATCCA+GGG | 0.623669 | 5.3:+42730867 | None:intergenic |
| TTATCCGGTGTTCCTCATCC+CGG | 0.624760 | 5.3:+42730398 | None:intergenic |
| CACTTCCCGAATATAGAGGT+CGG | 0.625274 | 5.3:+42735868 | None:intergenic |
| GAGATAGGGAGTGATTCACT+TGG | 0.625975 | 5.3:-42733008 | MS.gene053923:CDS |
| CTTCATTAACACCATGCCAA+AGG | 0.626725 | 5.3:+42733766 | None:intergenic |
| GTCATCGTCGAAGCCTTGGA+AGG | 0.626844 | 5.3:+42737796 | None:intergenic |
| TCCCTGCTCAGTAGACCGAA+GGG | 0.626928 | 5.3:+42731196 | None:intergenic |
| CACGACCAATACTCCCTCCA+CGG | 0.631814 | 5.3:+42731880 | None:intergenic |
| TGCAGAACAACAGGACATTG+AGG | 0.632534 | 5.3:-42730557 | MS.gene053923:CDS |
| AAACCATAACGGACACCAAG+AGG | 0.633603 | 5.3:-42732116 | MS.gene053923:intron |
| CGTGGAGGGAGTATTGGTCG+TGG | 0.634574 | 5.3:-42731879 | MS.gene053923:CDS |
| TCAGAAGGATCAAGTTCACA+TGG | 0.638514 | 5.3:+42733994 | None:intergenic |
| ATTTCTCACCTACTTCAATG+AGG | 0.641038 | 5.3:-42730982 | MS.gene053923:CDS |
| AGGAATCCAAGCTCTGCTTG+AGG | 0.641902 | 5.3:+42730954 | None:intergenic |
| TCTCCCAGGATTGAACATTG+TGG | 0.642241 | 5.3:-42736720 | MS.gene053923:intron |
| TATCTCTCCATGCAGCACAC+GGG | 0.645122 | 5.3:-42736561 | MS.gene053923:intron |
| TTCCTCGGCAATGTCATCAG+TGG | 0.645816 | 5.3:+42737823 | None:intergenic |
| TGGATGGGAGGTGATAGAGA+TGG | 0.646610 | 5.3:-42736495 | MS.gene053923:CDS |
| ACGTCAGAAACCTACTCCAG+TGG | 0.647148 | 5.3:-42736839 | MS.gene053923:CDS |
| TCTGTAAGAGCTCTACTGCA+AGG | 0.655051 | 5.3:+42732825 | None:intergenic |
| GATTTGAGTTATCCATGAAG+GGG | 0.657395 | 5.3:-42735835 | MS.gene053923:CDS |
| TGTCCAACATAGGCTTCGGG+TGG | 0.663123 | 5.3:-42732233 | MS.gene053923:intron |
| TCACTGAACCAGCTCCTCTG+AGG | 0.663926 | 5.3:+42732185 | None:intergenic |
| AAACCCAAATGTGACAGCAA+AGG | 0.665409 | 5.3:-42736472 | MS.gene053923:intron |
| CACCACTGATGACATTGCCG+AGG | 0.666464 | 5.3:-42737825 | MS.gene053923:CDS |
| TATCTCACCTCTATACTAGG+AGG | 0.670109 | 5.3:+42733525 | None:intergenic |
| GAAACTGTGAAGGACCTCAG+AGG | 0.671086 | 5.3:-42732199 | MS.gene053923:CDS |
| TCTATACTAGGAGGAACTAG+TGG | 0.671109 | 5.3:+42733534 | None:intergenic |
| AAGAGGTTCCAAAAGCTGGT+CGG | 0.673422 | 5.3:+42733957 | None:intergenic |
| GTACCATAGATTCATAACAG+AGG | 0.673498 | 5.3:+42733932 | None:intergenic |
| GCTGCCGGGATGAGGAACAC+CGG | 0.675028 | 5.3:-42730402 | MS.gene053923:CDS |
| TGAGGCCATAGAGATCACAT+AGG | 0.689767 | 5.3:+42732983 | None:intergenic |
| TAACCATGAGACTAAACGTG+AGG | 0.693529 | 5.3:-42734839 | MS.gene053923:CDS |
| GCTTGTAATATGAGACAGGG+AGG | 0.701576 | 5.3:-42737572 | MS.gene053923:CDS |
| CTTGATTGTAATCAGCACCA+GGG | 0.701799 | 5.3:+42734579 | None:intergenic |
| AGTGCTTGTAATATGAGACA+GGG | 0.705612 | 5.3:-42737575 | MS.gene053923:CDS |
| GGAGGGAGTATTGGTCGTGG+CGG | 0.711922 | 5.3:-42731876 | MS.gene053923:CDS |
| CTTCAGGACCAAGATCAGGT+CGG | 0.713884 | 5.3:+42737005 | None:intergenic |
| AGAACAACAGGACATTGAGG+AGG | 0.722574 | 5.3:-42730554 | MS.gene053923:CDS |
| TATCGCAAAGCAGTATGACG+AGG | 0.725476 | 5.3:-42730682 | MS.gene053923:CDS |
| ATATCCAGGGAATGGCACGA+AGG | 0.730973 | 5.3:+42730880 | None:intergenic |
| CTCACCATTACAGAGCCAGG+TGG | 0.779943 | 5.3:+42731822 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 42730398 | 42737855 | 42730398 | ID=MS.gene053923 |
| chr5.3 | mRNA | 42730398 | 42737855 | 42730398 | ID=MS.gene053923.t1;Parent=MS.gene053923 |
| chr5.3 | exon | 42737736 | 42737855 | 42737736 | ID=MS.gene053923.t1.exon1;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42737736 | 42737855 | 42737736 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42737477 | 42737597 | 42737477 | ID=MS.gene053923.t1.exon2;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42737477 | 42737597 | 42737477 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42737325 | 42737422 | 42737325 | ID=MS.gene053923.t1.exon3;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42737325 | 42737422 | 42737325 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42737157 | 42737234 | 42737157 | ID=MS.gene053923.t1.exon4;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42737157 | 42737234 | 42737157 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42736979 | 42737047 | 42736979 | ID=MS.gene053923.t1.exon5;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42736979 | 42737047 | 42736979 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42736824 | 42736902 | 42736824 | ID=MS.gene053923.t1.exon6;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42736824 | 42736902 | 42736824 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42736658 | 42736734 | 42736658 | ID=MS.gene053923.t1.exon7;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42736658 | 42736734 | 42736658 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42736473 | 42736568 | 42736473 | ID=MS.gene053923.t1.exon8;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42736473 | 42736568 | 42736473 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42735792 | 42735930 | 42735792 | ID=MS.gene053923.t1.exon9;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42735792 | 42735930 | 42735792 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42734734 | 42734865 | 42734734 | ID=MS.gene053923.t1.exon10;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42734734 | 42734865 | 42734734 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42734568 | 42734635 | 42734568 | ID=MS.gene053923.t1.exon11;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42734568 | 42734635 | 42734568 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42734223 | 42734486 | 42734223 | ID=MS.gene053923.t1.exon12;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42734223 | 42734486 | 42734223 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42733936 | 42734061 | 42733936 | ID=MS.gene053923.t1.exon13;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42733936 | 42734061 | 42733936 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42733751 | 42733858 | 42733751 | ID=MS.gene053923.t1.exon14;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42733751 | 42733858 | 42733751 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42733533 | 42733679 | 42733533 | ID=MS.gene053923.t1.exon15;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42733533 | 42733679 | 42733533 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42732980 | 42733078 | 42732980 | ID=MS.gene053923.t1.exon16;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42732980 | 42733078 | 42732980 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42732770 | 42732858 | 42732770 | ID=MS.gene053923.t1.exon17;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42732770 | 42732858 | 42732770 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42732117 | 42732243 | 42732117 | ID=MS.gene053923.t1.exon18;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42732117 | 42732243 | 42732117 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42731827 | 42732033 | 42731827 | ID=MS.gene053923.t1.exon19;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42731827 | 42732033 | 42731827 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| chr5.3 | exon | 42730398 | 42731222 | 42730398 | ID=MS.gene053923.t1.exon20;Parent=MS.gene053923.t1 |
| chr5.3 | CDS | 42730398 | 42731222 | 42730398 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
| Gene Sequence |
| Protein sequence |