Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053923.t1 | KEH17733.1 | 93.7 | 1054 | 31 | 3 | 1 | 1022 | 1 | 1051 | 0.00E+00 | 1820.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053923.t1 | Q8GVE8 | 71.4 | 1054 | 247 | 5 | 1 | 1022 | 1 | 1032 | 0.0e+00 | 1450.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053923.t1 | A0A072TLJ0 | 93.7 | 1054 | 31 | 3 | 1 | 1022 | 1 | 1051 | 0.0e+00 | 1820.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene053923 | MS.gene032250 | PPI |
MS.gene060602 | MS.gene053923 | PPI |
MS.gene63756 | MS.gene053923 | PPI |
MS.gene053923 | MS.gene54826 | PPI |
MS.gene053923 | MS.gene73810 | PPI |
MS.gene053923 | MS.gene026844 | PPI |
MS.gene053923 | MS.gene060183 | PPI |
MS.gene045495 | MS.gene053923 | PPI |
MS.gene053923 | MS.gene043538 | PPI |
MS.gene053923 | MS.gene006687 | PPI |
MS.gene031613 | MS.gene053923 | PPI |
MS.gene007929 | MS.gene053923 | PPI |
MS.gene36018 | MS.gene053923 | PPI |
MS.gene053923 | MS.gene028781 | PPI |
MS.gene053923 | MS.gene34261 | PPI |
MS.gene31351 | MS.gene053923 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053923.t1 | MTR_0002s0890 | 94.877 | 1054 | 19 | 4 | 1 | 1022 | 1 | 1051 | 0.0 | 2042 |
MS.gene053923.t1 | MTR_1g094010 | 70.623 | 674 | 130 | 10 | 1 | 637 | 1 | 643 | 0.0 | 882 |
MS.gene053923.t1 | MTR_1g094000 | 86.257 | 342 | 47 | 0 | 681 | 1022 | 1 | 342 | 0.0 | 603 |
MS.gene053923.t1 | MTR_8g463920 | 47.049 | 627 | 279 | 7 | 430 | 1022 | 360 | 967 | 7.80e-180 | 549 |
MS.gene053923.t1 | MTR_8g463920 | 45.989 | 187 | 100 | 1 | 105 | 290 | 155 | 341 | 4.59e-43 | 170 |
MS.gene053923.t1 | MTR_4g079860 | 46.411 | 627 | 283 | 7 | 430 | 1022 | 359 | 966 | 3.09e-179 | 547 |
MS.gene053923.t1 | MTR_4g079860 | 36.042 | 283 | 145 | 6 | 59 | 305 | 77 | 359 | 7.79e-44 | 173 |
MS.gene053923.t1 | MTR_2g076670 | 46.486 | 626 | 282 | 7 | 431 | 1022 | 360 | 966 | 1.78e-176 | 540 |
MS.gene053923.t1 | MTR_2g076670 | 45.263 | 190 | 103 | 1 | 102 | 290 | 151 | 340 | 1.72e-43 | 172 |
MS.gene053923.t1 | MTR_2g092930 | 45.774 | 627 | 287 | 7 | 430 | 1022 | 359 | 966 | 1.08e-173 | 533 |
MS.gene053923.t1 | MTR_2g092930 | 37.457 | 291 | 146 | 6 | 59 | 313 | 77 | 367 | 1.25e-45 | 178 |
MS.gene053923.t1 | MTR_8g463920 | 51.233 | 527 | 235 | 6 | 430 | 953 | 360 | 867 | 6.95e-169 | 518 |
MS.gene053923.t1 | MTR_8g463920 | 45.989 | 187 | 100 | 1 | 105 | 290 | 155 | 341 | 3.73e-43 | 170 |
MS.gene053923.t1 | MTR_1g009850 | 34.420 | 491 | 199 | 10 | 534 | 1022 | 1 | 370 | 1.44e-67 | 231 |
MS.gene053923.t1 | MTR_7g060030 | 51.471 | 204 | 25 | 3 | 45 | 248 | 1 | 130 | 3.61e-51 | 179 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053923.t1 | AT1G68750 | 72.676 | 1054 | 234 | 6 | 1 | 1022 | 1 | 1032 | 0.0 | 1516 |
MS.gene053923.t1 | AT2G42600 | 46.720 | 625 | 283 | 6 | 430 | 1022 | 357 | 963 | 1.69e-178 | 545 |
MS.gene053923.t1 | AT2G42600 | 36.111 | 288 | 156 | 6 | 23 | 283 | 48 | 334 | 3.65e-43 | 171 |
MS.gene053923.t1 | AT2G42600 | 46.720 | 625 | 283 | 6 | 430 | 1022 | 357 | 963 | 1.69e-178 | 545 |
MS.gene053923.t1 | AT2G42600 | 36.111 | 288 | 156 | 6 | 23 | 283 | 48 | 334 | 3.65e-43 | 171 |
MS.gene053923.t1 | AT2G42600 | 46.720 | 625 | 283 | 6 | 430 | 1022 | 357 | 963 | 1.69e-178 | 545 |
MS.gene053923.t1 | AT2G42600 | 36.111 | 288 | 156 | 6 | 23 | 283 | 48 | 334 | 3.65e-43 | 171 |
MS.gene053923.t1 | AT1G53310 | 45.920 | 625 | 287 | 6 | 431 | 1022 | 361 | 967 | 2.22e-175 | 538 |
MS.gene053923.t1 | AT1G53310 | 41.518 | 224 | 124 | 3 | 81 | 302 | 131 | 349 | 3.99e-44 | 174 |
MS.gene053923.t1 | AT1G53310 | 45.920 | 625 | 287 | 6 | 431 | 1022 | 361 | 967 | 2.22e-175 | 538 |
MS.gene053923.t1 | AT1G53310 | 41.518 | 224 | 124 | 3 | 81 | 302 | 131 | 349 | 3.99e-44 | 174 |
MS.gene053923.t1 | AT1G53310 | 45.920 | 625 | 287 | 6 | 431 | 1022 | 361 | 967 | 2.22e-175 | 538 |
MS.gene053923.t1 | AT1G53310 | 41.518 | 224 | 124 | 3 | 81 | 302 | 131 | 349 | 3.99e-44 | 174 |
MS.gene053923.t1 | AT3G14940 | 46.571 | 627 | 281 | 8 | 431 | 1022 | 361 | 968 | 8.90e-175 | 536 |
MS.gene053923.t1 | AT3G14940 | 42.857 | 224 | 121 | 3 | 81 | 302 | 131 | 349 | 3.93e-46 | 180 |
MS.gene053923.t1 | AT3G14940 | 46.571 | 627 | 281 | 8 | 431 | 1022 | 361 | 968 | 8.90e-175 | 536 |
MS.gene053923.t1 | AT3G14940 | 42.857 | 224 | 121 | 3 | 81 | 302 | 131 | 349 | 3.93e-46 | 180 |
Find 263 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAACTGGATCTTCCTATT+TGG | 0.142042 | 5.3:+42734303 | None:intergenic |
TGATGCAATTACCAAGTATT+TGG | 0.149299 | 5.3:-42733631 | MS.gene053923:CDS |
CATCCAAGAGCCAAACTTTA+TGG | 0.170496 | 5.3:+42736512 | None:intergenic |
CCTCTTCCCTTTAAGCTCTT+TGG | 0.192525 | 5.3:+42733557 | None:intergenic |
AATTACCAAGTATTTGGATA+TGG | 0.228014 | 5.3:-42733625 | MS.gene053923:CDS |
CTTACAGTTTGTGGAGAATT+AGG | 0.236647 | 5.3:-42732791 | MS.gene053923:CDS |
TTGAAGTAGGTGAGAAATTC+TGG | 0.237679 | 5.3:+42730987 | None:intergenic |
CCCGGCAGCAATACCATTAA+TGG | 0.242857 | 5.3:+42730416 | None:intergenic |
TTCTTAACCAAAGAGCTTAA+AGG | 0.244386 | 5.3:-42733564 | MS.gene053923:CDS |
TTGATGCATGCAGCATCTTT+TGG | 0.245556 | 5.3:-42737038 | MS.gene053923:intron |
CCAGGAAGATGAGGGAGTTT+TGG | 0.253716 | 5.3:+42734266 | None:intergenic |
AGACCTGATTGAGATGGTTT+TGG | 0.259081 | 5.3:-42730721 | MS.gene053923:CDS |
GCTACCTTTGCTGTCACATT+TGG | 0.290322 | 5.3:+42736468 | None:intergenic |
CTCCAAAAGCTTCTGAAAAC+TGG | 0.293397 | 5.3:+42734289 | None:intergenic |
ATCACCATTTCTCGATCTTC+AGG | 0.297580 | 5.3:+42736989 | None:intergenic |
AAAACTGGATCTTCCTATTT+GGG | 0.300543 | 5.3:+42734304 | None:intergenic |
GTCCTCCTTATCACCATTAA+TGG | 0.305564 | 5.3:-42730429 | MS.gene053923:CDS |
TGAAACAACCGACCAGCTTT+TGG | 0.306504 | 5.3:-42733965 | MS.gene053923:CDS |
CCAAAACTCCCTCATCTTCC+TGG | 0.311533 | 5.3:-42734266 | MS.gene053923:CDS |
CTACCTTTGCTGTCACATTT+GGG | 0.315237 | 5.3:+42736469 | None:intergenic |
AGTAAAGAAGCCGTCTGATT+TGG | 0.315756 | 5.3:+42734778 | None:intergenic |
GAGATGGTGCAGGCCAAGTT+TGG | 0.316061 | 5.3:-42731173 | MS.gene053923:CDS |
ATCCGTAGAGTTTCTACCTT+TGG | 0.323193 | 5.3:-42733782 | MS.gene053923:CDS |
TTGCAAAGAGTACGGTATTA+AGG | 0.329108 | 5.3:-42731919 | MS.gene053923:CDS |
ATGGTTGGGTATTCTGATTC+TGG | 0.332647 | 5.3:-42732008 | MS.gene053923:CDS |
TCTCCTCTGTTATGAATCTA+TGG | 0.333593 | 5.3:-42733935 | MS.gene053923:intron |
TTGAGCTCGCTGAACTTGTT+GGG | 0.334363 | 5.3:+42734393 | None:intergenic |
TTTCGAGTTTCTGCAGAGAT+AGG | 0.334368 | 5.3:-42733023 | MS.gene053923:CDS |
ACTTGCACTCCCATAAAGTT+TGG | 0.348788 | 5.3:-42736522 | MS.gene053923:CDS |
TAACCTCTTGGTGTCCGTTA+TGG | 0.349444 | 5.3:+42732113 | None:intergenic |
TTTGTCAGAGCACCCCTTCA+TGG | 0.350130 | 5.3:+42735823 | None:intergenic |
AGCTTCTTCTAAATTCATCT+TGG | 0.357923 | 5.3:+42737499 | None:intergenic |
TCTTAACCAAAGAGCTTAAA+GGG | 0.359246 | 5.3:-42733563 | MS.gene053923:CDS |
TGGCAACCGACCTCTATATT+CGG | 0.359485 | 5.3:-42735874 | MS.gene053923:CDS |
TTCGTTCTTCCTGCTTGGCT+TGG | 0.362195 | 5.3:-42730837 | MS.gene053923:CDS |
TTGTTTGCAGAATCCCAAAT+AGG | 0.365790 | 5.3:-42734317 | MS.gene053923:CDS |
ATGAGCTCTAGCTGGGAGTT+TGG | 0.366459 | 5.3:+42734750 | None:intergenic |
GTTTGCAAACTGTATTATAA+AGG | 0.369503 | 5.3:+42737327 | None:intergenic |
CTTCCTGCTTGGCTTGGAGT+TGG | 0.379581 | 5.3:-42730831 | MS.gene053923:CDS |
GCTTGGCTTGGAGTTGGAGC+AGG | 0.381867 | 5.3:-42730825 | MS.gene053923:CDS |
TGGGCGCTTTACCGCTGCTT+GGG | 0.387841 | 5.3:-42731976 | MS.gene053923:CDS |
CTGGGCGCTTTACCGCTGCT+TGG | 0.395892 | 5.3:-42731977 | MS.gene053923:CDS |
CTCTAGCAATCTTGTGGAGC+TGG | 0.398924 | 5.3:-42733842 | MS.gene053923:intron |
ATCAAGTGTTTCAGCATGTC+TGG | 0.402474 | 5.3:+42733650 | None:intergenic |
ACTTCAACTGTGAGCAATGC+TGG | 0.407713 | 5.3:-42734437 | MS.gene053923:CDS |
CTCCCATAAAGTTTGGCTCT+TGG | 0.409831 | 5.3:-42736515 | MS.gene053923:CDS |
TTCCCGAGGACAATTCTATA+AGG | 0.410709 | 5.3:+42734236 | None:intergenic |
CCAGATTCGTTCTTCCTGCT+TGG | 0.411430 | 5.3:-42730842 | MS.gene053923:CDS |
TGGCGGAGGCCCAACTTATC+TGG | 0.413350 | 5.3:-42731859 | MS.gene053923:CDS |
CCAAGCAGGAAGAACGAATC+TGG | 0.414731 | 5.3:+42730842 | None:intergenic |
ATTACCAAGTATTTGGATAT+GGG | 0.416538 | 5.3:-42733624 | MS.gene053923:CDS |
TTGGCACATGAAATTCTAGA+AGG | 0.416667 | 5.3:-42735791 | MS.gene053923:intron |
TATGAGACAGGGAGGAATTG+AGG | 0.416965 | 5.3:-42737564 | MS.gene053923:CDS |
TTCCCAAAACCATCTCAATC+AGG | 0.417745 | 5.3:+42730718 | None:intergenic |
ATTGAGCTCGCTGAACTTGT+TGG | 0.419020 | 5.3:+42734392 | None:intergenic |
ATCCAAGAGCCAAACTTTAT+GGG | 0.419228 | 5.3:+42736513 | None:intergenic |
GGGAGTATTGGTCGTGGCGG+AGG | 0.421197 | 5.3:-42731873 | MS.gene053923:CDS |
TGGGGCGGCTACCTATGTTT+AGG | 0.424115 | 5.3:+42730934 | None:intergenic |
TGTTGGGGATGCATGACTAT+TGG | 0.424180 | 5.3:+42734409 | None:intergenic |
AGATGGTGCAGGCCAAGTTT+GGG | 0.425318 | 5.3:-42731172 | MS.gene053923:CDS |
TGTTGATTAGAGTTGGAAGA+AGG | 0.430928 | 5.3:+42734359 | None:intergenic |
AACCCTTCGGTCTACTGAGC+AGG | 0.432317 | 5.3:-42731198 | MS.gene053923:CDS |
TATAATGACCGACCTGATCT+TGG | 0.436771 | 5.3:-42737013 | MS.gene053923:CDS |
TGGAGCCTATGTGATCTCTA+TGG | 0.438799 | 5.3:-42732988 | MS.gene053923:CDS |
CATAAAGTTTGGCTCTTGGA+TGG | 0.439041 | 5.3:-42736511 | MS.gene053923:CDS |
GAAGGTAAATGAGCTCTAGC+TGG | 0.439845 | 5.3:+42734742 | None:intergenic |
GTTGTGGCCTTTCTTCTCGT+GGG | 0.441637 | 5.3:+42730915 | None:intergenic |
CTCTGACAAATTGTCTAGAT+TGG | 0.442124 | 5.3:-42735810 | MS.gene053923:CDS |
AAGAAGTTGTTGATTAGAGT+TGG | 0.442500 | 5.3:+42734352 | None:intergenic |
ACCATTAATGGTATTGCTGC+CGG | 0.442827 | 5.3:-42730417 | MS.gene053923:CDS |
CAGAAACTCGAAACGTATCT+AGG | 0.443067 | 5.3:+42733033 | None:intergenic |
GACACCTTCGTGCCATTCCC+TGG | 0.444073 | 5.3:-42730884 | MS.gene053923:CDS |
TGAGAGAGATAACTTCAATA+TGG | 0.445525 | 5.3:-42736879 | MS.gene053923:CDS |
ACAAACTTCTGCAGAACAAC+AGG | 0.445868 | 5.3:-42730566 | MS.gene053923:CDS |
CTCCACTTGCAACATGTTCA+AGG | 0.446819 | 5.3:+42730500 | None:intergenic |
AGAAAGGCCACAACAGGAAT+CGG | 0.447845 | 5.3:-42730906 | MS.gene053923:CDS |
TTTGACGGACTTCTATTCTC+TGG | 0.450218 | 5.3:+42734805 | None:intergenic |
GACTGAATAGCCAGATAAGT+TGG | 0.452157 | 5.3:+42731849 | None:intergenic |
GCTCATTTACCTTCTTGTGC+TGG | 0.452746 | 5.3:-42734733 | MS.gene053923:intron |
TCTGATTCTGGTAAAGATGC+TGG | 0.453942 | 5.3:-42731996 | MS.gene053923:CDS |
ACGAGAAGAAAGGCCACAAC+AGG | 0.454693 | 5.3:-42730912 | MS.gene053923:CDS |
ATTCTATAAGGAGCAATTCC+AGG | 0.458187 | 5.3:+42734248 | None:intergenic |
TTGAAAGGTGCGTGCGAGAA+AGG | 0.458305 | 5.3:-42730801 | MS.gene053923:CDS |
TCTAGGACCTCTTTAACATC+TGG | 0.459437 | 5.3:+42733050 | None:intergenic |
TACAGTCATCGTCGAAGCCT+TGG | 0.459975 | 5.3:+42737792 | None:intergenic |
GACGATGACTGTAAGTTGCT+TGG | 0.460688 | 5.3:-42737782 | MS.gene053923:CDS |
TTGAGTCCATGCGAATATCC+AGG | 0.461942 | 5.3:+42730866 | None:intergenic |
GAAAACTTCTATCAATAGAT+TGG | 0.465852 | 5.3:-42732159 | MS.gene053923:CDS |
GGAGAAGAGGTTCCAAAAGC+TGG | 0.468802 | 5.3:+42733953 | None:intergenic |
AATCCTCACGTTTAGTCTCA+TGG | 0.468993 | 5.3:+42734836 | None:intergenic |
TGTTTGTGGCAACCCAAACT+TGG | 0.470943 | 5.3:+42731160 | None:intergenic |
GCCTATATGCAGGTCATGGT+TGG | 0.471881 | 5.3:-42732023 | MS.gene053923:intron |
TGAGGAGATGGCAGAGCTGT+TGG | 0.473716 | 5.3:-42737546 | MS.gene053923:CDS |
GGCAACCGACCTCTATATTC+GGG | 0.474992 | 5.3:-42735873 | MS.gene053923:CDS |
AAGATTGTCACCGTTATTTG+TGG | 0.475407 | 5.3:-42730594 | MS.gene053923:CDS |
TTATAATACAGTTTGCAAAC+AGG | 0.476153 | 5.3:-42737324 | MS.gene053923:intron |
AATGAAGCTTGACTTGCGTC+AGG | 0.477603 | 5.3:-42733750 | MS.gene053923:intron |
ATTAAGGTTACTTTATTCCA+TGG | 0.479859 | 5.3:-42731903 | MS.gene053923:CDS |
GATGCACGTCTTACAGTTTG+TGG | 0.480244 | 5.3:-42732800 | MS.gene053923:CDS |
AGTCAGCAATGCTTTAAAGA+AGG | 0.480964 | 5.3:-42736657 | MS.gene053923:intron |
TGTTGTGGCCTTTCTTCTCG+TGG | 0.483275 | 5.3:+42730914 | None:intergenic |
ATAGTTGGTGAGAAGTTATC+CGG | 0.483396 | 5.3:+42730383 | None:intergenic |
GCTATTCAGTCCCAGCCACC+TGG | 0.483772 | 5.3:-42731837 | MS.gene053923:CDS |
GTGAAGGACCTCAGAGGAGC+TGG | 0.484164 | 5.3:-42732193 | MS.gene053923:CDS |
CTTTATATGTTTGTATTGCA+AGG | 0.484746 | 5.3:+42737163 | None:intergenic |
GCCACACCTCAAGCAGAGCT+TGG | 0.486352 | 5.3:-42730960 | MS.gene053923:CDS |
CAATACCATTAATGGTGATA+AGG | 0.487204 | 5.3:+42730424 | None:intergenic |
TCCTATCTCACCTCTATACT+AGG | 0.489136 | 5.3:+42733522 | None:intergenic |
CGATCTTCAGGACCAAGATC+AGG | 0.489148 | 5.3:+42737001 | None:intergenic |
CCATTACAGAGCCAGGTGGC+TGG | 0.489803 | 5.3:+42731826 | None:intergenic |
AAGAACTTGGTCGTCAACTA+AGG | 0.489824 | 5.3:-42730638 | MS.gene053923:CDS |
CAATCTTGTGGAGCTGGAGC+TGG | 0.490881 | 5.3:-42733836 | MS.gene053923:CDS |
GCACCAGGGATGTCGAGTCT+TGG | 0.491641 | 5.3:+42734593 | None:intergenic |
AGATTGTCACCGTTATTTGT+GGG | 0.493987 | 5.3:-42730593 | MS.gene053923:CDS |
AGAAATGGTGATAGAAGATC+TGG | 0.494628 | 5.3:-42736978 | MS.gene053923:intron |
GAGTGCTTGTAATATGAGAC+AGG | 0.494896 | 5.3:-42737576 | MS.gene053923:CDS |
AATTTCCTCTAGCAATCTTG+TGG | 0.496853 | 5.3:-42733848 | MS.gene053923:intron |
CCATTAATGGTATTGCTGCC+GGG | 0.497379 | 5.3:-42730416 | MS.gene053923:CDS |
TTCGAGTTTCTGCAGAGATA+GGG | 0.499286 | 5.3:-42733022 | MS.gene053923:CDS |
ACAGGGAGGAATTGAGGAGA+TGG | 0.500077 | 5.3:-42737558 | MS.gene053923:CDS |
AAATCCCATCTTGCAAAAGC+TGG | 0.501455 | 5.3:+42737360 | None:intergenic |
CTCCTTATAGAATTGTCCTC+GGG | 0.504346 | 5.3:-42734238 | MS.gene053923:CDS |
CCTATATGCAGGTCATGGTT+GGG | 0.504623 | 5.3:-42732022 | MS.gene053923:intron |
TTTATGGGAGTGCAAGTCAA+TGG | 0.506481 | 5.3:+42736528 | None:intergenic |
CATGGCCGTGGAGGGAGTAT+TGG | 0.506592 | 5.3:-42731885 | MS.gene053923:CDS |
CCTCGGGAATGTAAAAGATA+AGG | 0.509108 | 5.3:-42734222 | MS.gene053923:intron |
TGGTCCTGAAGATCGAGAAA+TGG | 0.509757 | 5.3:-42736993 | MS.gene053923:CDS |
ATGGTATTGCTGCCGGGATG+AGG | 0.512914 | 5.3:-42730410 | MS.gene053923:CDS |
TATCATTGCAGGGAACCCTT+CGG | 0.513049 | 5.3:-42731211 | MS.gene053923:intron |
CCAGCCACCTGGCTCTGTAA+TGG | 0.513295 | 5.3:-42731826 | MS.gene053923:intron |
TTTGTCGTGCCCACAAATAA+CGG | 0.514471 | 5.3:+42730584 | None:intergenic |
ATGAGACTAAACGTGAGGAT+TGG | 0.515240 | 5.3:-42734834 | MS.gene053923:CDS |
ATAAAGTTTGGCTCTTGGAT+GGG | 0.515444 | 5.3:-42736510 | MS.gene053923:CDS |
GAGATTTGAGTTATCCATGA+AGG | 0.515713 | 5.3:-42735837 | MS.gene053923:CDS |
GGAGTTGGAGCAGGTTTGAA+AGG | 0.516727 | 5.3:-42730816 | MS.gene053923:CDS |
CGACCTCTATATTCGGGAAG+TGG | 0.517085 | 5.3:-42735867 | MS.gene053923:CDS |
TGCAAGTGGAGATACTTAAG+AGG | 0.518732 | 5.3:-42730488 | MS.gene053923:CDS |
CATTACAGAGCCAGGTGGCT+GGG | 0.519537 | 5.3:+42731827 | None:intergenic |
GCTCCAACTCCAAGCCAAGC+AGG | 0.520197 | 5.3:+42730828 | None:intergenic |
TAGCAGTTGATGTACATTTG+AGG | 0.521119 | 5.3:+42732965 | None:intergenic |
TATCCACTTCCCGAATATAG+AGG | 0.522113 | 5.3:+42735864 | None:intergenic |
GGTTGCTCCAGATGTTAAAG+AGG | 0.523565 | 5.3:-42733057 | MS.gene053923:CDS |
ACTAGTTCCTCCTAGTATAG+AGG | 0.523919 | 5.3:-42733532 | MS.gene053923:intron |
CAATACTCCCTCCACGGCCA+TGG | 0.524087 | 5.3:+42731886 | None:intergenic |
ATATGGGTACATACAGTGAA+TGG | 0.527194 | 5.3:-42733608 | MS.gene053923:CDS |
GAGTTGGAAGAAGGAGAGCG+TGG | 0.527361 | 5.3:+42734368 | None:intergenic |
CTAGCTTCATCCACTGGAGT+AGG | 0.528935 | 5.3:+42736829 | None:intergenic |
GCTCTAGCTGGGAGTTTGGA+TGG | 0.529054 | 5.3:+42734754 | None:intergenic |
GCTCCTTATAGAATTGTCCT+CGG | 0.530711 | 5.3:-42734239 | MS.gene053923:CDS |
TAGAGTTTCTACCTTTGGCA+TGG | 0.532015 | 5.3:-42733777 | MS.gene053923:CDS |
GTTACTTTATTCCATGGCCG+TGG | 0.532100 | 5.3:-42731897 | MS.gene053923:CDS |
TCCTCTCTTTGAAACTGTGA+AGG | 0.532310 | 5.3:-42732209 | MS.gene053923:CDS |
AGTTGTCTGACAGATGTTTG+TGG | 0.533030 | 5.3:+42731146 | None:intergenic |
AGATTTGAGTTATCCATGAA+GGG | 0.534361 | 5.3:-42735836 | MS.gene053923:CDS |
CCAAAGAGCTTAAAGGGAAG+AGG | 0.535345 | 5.3:-42733557 | MS.gene053923:CDS |
GAAAGTCCACTCTTTGTACA+TGG | 0.535544 | 5.3:+42730758 | None:intergenic |
TCCAAGCTCTGCTTGAGGTG+TGG | 0.536208 | 5.3:+42730959 | None:intergenic |
CTTTATTCCATGGCCGTGGA+GGG | 0.536693 | 5.3:-42731893 | MS.gene053923:CDS |
TGTACCCATATCCAAATACT+TGG | 0.536867 | 5.3:+42733620 | None:intergenic |
AGAATTAGGAAGAGAATGTC+CGG | 0.540328 | 5.3:-42732777 | MS.gene053923:CDS |
ACTGAATAGCCAGATAAGTT+GGG | 0.541395 | 5.3:+42731850 | None:intergenic |
TAGCCGCCCCACGAGAAGAA+AGG | 0.541590 | 5.3:-42730922 | MS.gene053923:CDS |
ACTTTATTCCATGGCCGTGG+AGG | 0.542132 | 5.3:-42731894 | MS.gene053923:CDS |
GTCTACTGAGCAGGGAGAGA+TGG | 0.542351 | 5.3:-42731189 | MS.gene053923:CDS |
ATCAACAACTTCTTGCTCAA+AGG | 0.542695 | 5.3:-42734343 | MS.gene053923:CDS |
TCCACTTGCAACATGTTCAA+GGG | 0.543143 | 5.3:+42730501 | None:intergenic |
ATGTGTCCAACATAGGCTTC+GGG | 0.544144 | 5.3:-42732236 | MS.gene053923:intron |
TGGCCTTTCTTCTCGTGGGG+CGG | 0.546370 | 5.3:+42730919 | None:intergenic |
TCCCTTGAACATGTTGCAAG+TGG | 0.546576 | 5.3:-42730502 | MS.gene053923:CDS |
CTGATTCTGGTAAAGATGCT+GGG | 0.546993 | 5.3:-42731995 | MS.gene053923:CDS |
ACAGAGAACTCGTAGACGAT+TGG | 0.547439 | 5.3:-42734037 | MS.gene053923:CDS |
CTCCCTGCTCAGTAGACCGA+AGG | 0.549087 | 5.3:+42731195 | None:intergenic |
CATCCAAGACTCGACATCCC+TGG | 0.552104 | 5.3:-42734596 | MS.gene053923:CDS |
CCAGCTCTAGCTTCATCCAC+TGG | 0.553320 | 5.3:+42736823 | None:intergenic |
CATAATAGACCTGATTGAGA+TGG | 0.555044 | 5.3:-42730727 | MS.gene053923:CDS |
GATTCATAACAGAGGAGAAG+AGG | 0.556501 | 5.3:+42733940 | None:intergenic |
ATGTTCAAGGGATTGAGAAA+CGG | 0.557412 | 5.3:+42730513 | None:intergenic |
GCCTTGGAAGGACATTTCCT+CGG | 0.558046 | 5.3:+42737808 | None:intergenic |
TGAGCTCGCTGAACTTGTTG+GGG | 0.558745 | 5.3:+42734394 | None:intergenic |
CAATCAGGTCTATTATGCAT+TGG | 0.559332 | 5.3:+42730733 | None:intergenic |
GGAACTTTACAAAGCTCAAG+AGG | 0.559726 | 5.3:-42731955 | MS.gene053923:CDS |
ACTTGATTGTAATCAGCACC+AGG | 0.561220 | 5.3:+42734578 | None:intergenic |
TAACTCACCATTACAGAGCC+AGG | 0.562724 | 5.3:+42731819 | None:intergenic |
TTGTGGCCTTTCTTCTCGTG+GGG | 0.562751 | 5.3:+42730916 | None:intergenic |
AGAGCTGTTGGAGAAGCAGT+TGG | 0.563366 | 5.3:-42737534 | MS.gene053923:CDS |
GTTGTTTCATAGTAATCAGA+AGG | 0.564434 | 5.3:+42733979 | None:intergenic |
ACATTGTGGAGCAGTCACTC+TGG | 0.564696 | 5.3:-42736706 | MS.gene053923:CDS |
CCATTCCCTGGATATTCGCA+TGG | 0.564946 | 5.3:-42730872 | MS.gene053923:CDS |
GGAGCAATTCCAGGAAGATG+AGG | 0.566139 | 5.3:+42734257 | None:intergenic |
TTACAATCAAGTCAATATCA+AGG | 0.566345 | 5.3:-42734567 | MS.gene053923:intron |
GGAGTGCAAGTCAATGGAAG+TGG | 0.566520 | 5.3:+42736534 | None:intergenic |
AGACTGTACTGCGGTAACAC+TGG | 0.569328 | 5.3:+42731018 | None:intergenic |
TCTTCTCGAGGTGGTAGAGG+TGG | 0.570281 | 5.3:+42731083 | None:intergenic |
GCCGAGGAAATGTCCTTCCA+AGG | 0.571295 | 5.3:-42737809 | MS.gene053923:CDS |
CTGACTCGACGTAAATAATG+AGG | 0.573363 | 5.3:+42736674 | None:intergenic |
GAGCAATTCCAGGAAGATGA+GGG | 0.576413 | 5.3:+42734258 | None:intergenic |
TCCTTCACAGTTTCAAAGAG+AGG | 0.577694 | 5.3:+42732208 | None:intergenic |
GTACGTCGATTAATTTGTGT+GGG | 0.579325 | 5.3:+42737185 | None:intergenic |
AAGGTAAATGAGCTCTAGCT+GGG | 0.581517 | 5.3:+42734743 | None:intergenic |
AAGTTTGGCTCTTGGATGGG+AGG | 0.585622 | 5.3:-42736507 | MS.gene053923:CDS |
TGCCAAAGGTAGAAACTCTA+CGG | 0.585890 | 5.3:+42733780 | None:intergenic |
AAGGTGTCCGATTCCTGTTG+TGG | 0.590609 | 5.3:+42730899 | None:intergenic |
TGCAGTAGAGCTCTTACAGA+AGG | 0.591503 | 5.3:-42732822 | MS.gene053923:CDS |
TCAGAGAAGAGACAAGAACT+TGG | 0.593854 | 5.3:-42730651 | MS.gene053923:CDS |
TTAGGAAGAGAATGTCCGGC+TGG | 0.594796 | 5.3:-42732773 | MS.gene053923:CDS |
GGTACGTCGATTAATTTGTG+TGG | 0.595875 | 5.3:+42737184 | None:intergenic |
GTGGCTGCTTGCAAAGAGTA+CGG | 0.595935 | 5.3:-42731927 | MS.gene053923:CDS |
CCATGCGAATATCCAGGGAA+TGG | 0.598516 | 5.3:+42730872 | None:intergenic |
CCAGTGGATGAAGCTAGAGC+TGG | 0.602228 | 5.3:-42736823 | MS.gene053923:intron |
ACGATTGGAACTGCTTCTAG+AGG | 0.605318 | 5.3:-42734022 | MS.gene053923:CDS |
CAAAGCTCAAGAGGATGTAG+TGG | 0.607111 | 5.3:-42731946 | MS.gene053923:CDS |
TTTGTAAAGTTCCCAAGCAG+CGG | 0.609705 | 5.3:+42731965 | None:intergenic |
TGAGCAGGGAGAGATGGTGC+AGG | 0.610093 | 5.3:-42731183 | MS.gene053923:CDS |
TACCATTAATGGTGATAAGG+AGG | 0.611172 | 5.3:+42730427 | None:intergenic |
GGAGCTGGTGTGTTAGCTGA+TGG | 0.612816 | 5.3:-42733821 | MS.gene053923:CDS |
AGGTGTGGCCTCATTGAAGT+AGG | 0.612841 | 5.3:+42730974 | None:intergenic |
ACCCTTCGGTCTACTGAGCA+GGG | 0.612866 | 5.3:-42731197 | MS.gene053923:CDS |
AGATGGACTTACGTTCCAGC+CGG | 0.614237 | 5.3:+42732758 | None:intergenic |
GAGCTTGGATTCCTAAACAT+AGG | 0.618041 | 5.3:-42730945 | MS.gene053923:CDS |
TCATGTGTACCAGCACAAGA+AGG | 0.618233 | 5.3:+42734724 | None:intergenic |
TAAAAGCCATGTACAAAGAG+TGG | 0.619720 | 5.3:-42730764 | MS.gene053923:CDS |
TGAGTCCATGCGAATATCCA+GGG | 0.623669 | 5.3:+42730867 | None:intergenic |
TTATCCGGTGTTCCTCATCC+CGG | 0.624760 | 5.3:+42730398 | None:intergenic |
CACTTCCCGAATATAGAGGT+CGG | 0.625274 | 5.3:+42735868 | None:intergenic |
GAGATAGGGAGTGATTCACT+TGG | 0.625975 | 5.3:-42733008 | MS.gene053923:CDS |
CTTCATTAACACCATGCCAA+AGG | 0.626725 | 5.3:+42733766 | None:intergenic |
GTCATCGTCGAAGCCTTGGA+AGG | 0.626844 | 5.3:+42737796 | None:intergenic |
TCCCTGCTCAGTAGACCGAA+GGG | 0.626928 | 5.3:+42731196 | None:intergenic |
CACGACCAATACTCCCTCCA+CGG | 0.631814 | 5.3:+42731880 | None:intergenic |
TGCAGAACAACAGGACATTG+AGG | 0.632534 | 5.3:-42730557 | MS.gene053923:CDS |
AAACCATAACGGACACCAAG+AGG | 0.633603 | 5.3:-42732116 | MS.gene053923:intron |
CGTGGAGGGAGTATTGGTCG+TGG | 0.634574 | 5.3:-42731879 | MS.gene053923:CDS |
TCAGAAGGATCAAGTTCACA+TGG | 0.638514 | 5.3:+42733994 | None:intergenic |
ATTTCTCACCTACTTCAATG+AGG | 0.641038 | 5.3:-42730982 | MS.gene053923:CDS |
AGGAATCCAAGCTCTGCTTG+AGG | 0.641902 | 5.3:+42730954 | None:intergenic |
TCTCCCAGGATTGAACATTG+TGG | 0.642241 | 5.3:-42736720 | MS.gene053923:intron |
TATCTCTCCATGCAGCACAC+GGG | 0.645122 | 5.3:-42736561 | MS.gene053923:intron |
TTCCTCGGCAATGTCATCAG+TGG | 0.645816 | 5.3:+42737823 | None:intergenic |
TGGATGGGAGGTGATAGAGA+TGG | 0.646610 | 5.3:-42736495 | MS.gene053923:CDS |
ACGTCAGAAACCTACTCCAG+TGG | 0.647148 | 5.3:-42736839 | MS.gene053923:CDS |
TCTGTAAGAGCTCTACTGCA+AGG | 0.655051 | 5.3:+42732825 | None:intergenic |
GATTTGAGTTATCCATGAAG+GGG | 0.657395 | 5.3:-42735835 | MS.gene053923:CDS |
TGTCCAACATAGGCTTCGGG+TGG | 0.663123 | 5.3:-42732233 | MS.gene053923:intron |
TCACTGAACCAGCTCCTCTG+AGG | 0.663926 | 5.3:+42732185 | None:intergenic |
AAACCCAAATGTGACAGCAA+AGG | 0.665409 | 5.3:-42736472 | MS.gene053923:intron |
CACCACTGATGACATTGCCG+AGG | 0.666464 | 5.3:-42737825 | MS.gene053923:CDS |
TATCTCACCTCTATACTAGG+AGG | 0.670109 | 5.3:+42733525 | None:intergenic |
GAAACTGTGAAGGACCTCAG+AGG | 0.671086 | 5.3:-42732199 | MS.gene053923:CDS |
TCTATACTAGGAGGAACTAG+TGG | 0.671109 | 5.3:+42733534 | None:intergenic |
AAGAGGTTCCAAAAGCTGGT+CGG | 0.673422 | 5.3:+42733957 | None:intergenic |
GTACCATAGATTCATAACAG+AGG | 0.673498 | 5.3:+42733932 | None:intergenic |
GCTGCCGGGATGAGGAACAC+CGG | 0.675028 | 5.3:-42730402 | MS.gene053923:CDS |
TGAGGCCATAGAGATCACAT+AGG | 0.689767 | 5.3:+42732983 | None:intergenic |
TAACCATGAGACTAAACGTG+AGG | 0.693529 | 5.3:-42734839 | MS.gene053923:CDS |
GCTTGTAATATGAGACAGGG+AGG | 0.701576 | 5.3:-42737572 | MS.gene053923:CDS |
CTTGATTGTAATCAGCACCA+GGG | 0.701799 | 5.3:+42734579 | None:intergenic |
AGTGCTTGTAATATGAGACA+GGG | 0.705612 | 5.3:-42737575 | MS.gene053923:CDS |
GGAGGGAGTATTGGTCGTGG+CGG | 0.711922 | 5.3:-42731876 | MS.gene053923:CDS |
CTTCAGGACCAAGATCAGGT+CGG | 0.713884 | 5.3:+42737005 | None:intergenic |
AGAACAACAGGACATTGAGG+AGG | 0.722574 | 5.3:-42730554 | MS.gene053923:CDS |
TATCGCAAAGCAGTATGACG+AGG | 0.725476 | 5.3:-42730682 | MS.gene053923:CDS |
ATATCCAGGGAATGGCACGA+AGG | 0.730973 | 5.3:+42730880 | None:intergenic |
CTCACCATTACAGAGCCAGG+TGG | 0.779943 | 5.3:+42731822 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 42730398 | 42737855 | 42730398 | ID=MS.gene053923 |
chr5.3 | mRNA | 42730398 | 42737855 | 42730398 | ID=MS.gene053923.t1;Parent=MS.gene053923 |
chr5.3 | exon | 42737736 | 42737855 | 42737736 | ID=MS.gene053923.t1.exon1;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42737736 | 42737855 | 42737736 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42737477 | 42737597 | 42737477 | ID=MS.gene053923.t1.exon2;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42737477 | 42737597 | 42737477 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42737325 | 42737422 | 42737325 | ID=MS.gene053923.t1.exon3;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42737325 | 42737422 | 42737325 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42737157 | 42737234 | 42737157 | ID=MS.gene053923.t1.exon4;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42737157 | 42737234 | 42737157 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42736979 | 42737047 | 42736979 | ID=MS.gene053923.t1.exon5;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42736979 | 42737047 | 42736979 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42736824 | 42736902 | 42736824 | ID=MS.gene053923.t1.exon6;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42736824 | 42736902 | 42736824 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42736658 | 42736734 | 42736658 | ID=MS.gene053923.t1.exon7;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42736658 | 42736734 | 42736658 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42736473 | 42736568 | 42736473 | ID=MS.gene053923.t1.exon8;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42736473 | 42736568 | 42736473 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42735792 | 42735930 | 42735792 | ID=MS.gene053923.t1.exon9;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42735792 | 42735930 | 42735792 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42734734 | 42734865 | 42734734 | ID=MS.gene053923.t1.exon10;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42734734 | 42734865 | 42734734 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42734568 | 42734635 | 42734568 | ID=MS.gene053923.t1.exon11;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42734568 | 42734635 | 42734568 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42734223 | 42734486 | 42734223 | ID=MS.gene053923.t1.exon12;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42734223 | 42734486 | 42734223 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42733936 | 42734061 | 42733936 | ID=MS.gene053923.t1.exon13;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42733936 | 42734061 | 42733936 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42733751 | 42733858 | 42733751 | ID=MS.gene053923.t1.exon14;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42733751 | 42733858 | 42733751 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42733533 | 42733679 | 42733533 | ID=MS.gene053923.t1.exon15;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42733533 | 42733679 | 42733533 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42732980 | 42733078 | 42732980 | ID=MS.gene053923.t1.exon16;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42732980 | 42733078 | 42732980 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42732770 | 42732858 | 42732770 | ID=MS.gene053923.t1.exon17;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42732770 | 42732858 | 42732770 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42732117 | 42732243 | 42732117 | ID=MS.gene053923.t1.exon18;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42732117 | 42732243 | 42732117 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42731827 | 42732033 | 42731827 | ID=MS.gene053923.t1.exon19;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42731827 | 42732033 | 42731827 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
chr5.3 | exon | 42730398 | 42731222 | 42730398 | ID=MS.gene053923.t1.exon20;Parent=MS.gene053923.t1 |
chr5.3 | CDS | 42730398 | 42731222 | 42730398 | ID=cds.MS.gene053923.t1;Parent=MS.gene053923.t1 |
Gene Sequence |
Protein sequence |