AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054101

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054101.t1 MTR_1g027890 91.724 145 11 1 1 145 262 405 1.02e-94 280
MS.gene054101.t1 MTR_1g027700 89.655 145 15 0 1 145 193 337 5.74e-94 276
MS.gene054101.t1 MTR_1g027960 94.483 145 8 0 1 145 437 581 2.16e-91 277
MS.gene054101.t1 MTR_1g027060 76.129 155 37 0 1 155 365 519 2.31e-88 267
MS.gene054101.t1 MTR_0690s0010 86.207 145 19 1 1 145 397 540 2.46e-87 265
MS.gene054101.t1 MTR_6g445600 86.207 145 19 1 1 145 423 566 2.81e-87 266
MS.gene054101.t1 MTR_1g027150 75.484 155 38 0 1 155 418 572 2.14e-82 253
MS.gene054101.t1 MTR_1g027820 75.641 156 37 1 1 155 416 571 6.12e-82 252
MS.gene054101.t1 MTR_1g028220 78.710 155 33 0 1 155 420 574 1.76e-81 251
MS.gene054101.t1 MTR_1g027040 74.359 156 39 1 1 155 420 575 4.38e-81 249
MS.gene054101.t1 MTR_3g028650 75.000 156 38 1 1 155 418 573 2.86e-71 224
MS.gene054101.t1 MTR_1g027690 62.338 154 57 1 1 154 447 599 5.75e-63 203
MS.gene054101.t1 MTR_1g027970 60.645 155 60 1 1 155 449 602 4.46e-61 198
MS.gene054101.t1 MTR_4g073230 61.538 156 56 3 1 155 458 610 1.15e-59 194
MS.gene054101.t1 MTR_1g027500 59.740 154 58 4 1 153 463 613 6.03e-57 187
MS.gene054101.t1 MTR_1g026940 61.039 154 56 3 1 153 462 612 5.60e-56 185
MS.gene054101.t1 MTR_1g028130 61.039 154 56 3 1 153 449 599 7.83e-55 181
MS.gene054101.t1 MTR_1g028080 59.740 154 58 3 1 153 449 599 1.63e-53 178
MS.gene054101.t1 MTR_1g027420 57.419 155 62 4 1 153 406 558 2.30e-53 177
MS.gene054101.t1 MTR_1g027370 59.355 155 58 5 1 153 463 614 5.36e-53 177
MS.gene054101.t1 MTR_1g027200 58.442 154 52 4 1 153 392 534 2.26e-51 171
MS.gene054101.t1 MTR_1g031320 51.572 159 71 4 1 155 464 620 2.71e-50 170
MS.gene054101.t1 MTR_1g031460 49.367 158 76 4 1 155 451 607 2.90e-48 164
MS.gene054101.t1 MTR_1g028290 51.351 148 70 2 1 147 448 594 4.81e-48 163
MS.gene054101.t1 MTR_1g031580 49.367 158 76 3 1 155 460 616 7.77e-48 163
MS.gene054101.t1 MTR_1g031540 50.327 153 72 3 1 150 155 306 1.99e-45 158
MS.gene054101.t1 MTR_1g031540 36.220 127 51 1 1 127 508 604 6.00e-22 91.7
MS.gene054101.t1 MTR_1g031540 50.327 153 72 3 1 150 447 598 2.56e-45 158
MS.gene054101.t1 MTR_1g031540 36.220 127 51 1 1 127 800 896 6.82e-22 91.3
MS.gene054101.t1 MTR_1g031430 42.969 128 71 2 1 127 41 167 1.43e-35 122
MS.gene054101.t1 MTR_7g082430 51.538 130 56 5 5 129 478 605 1.55e-34 127
MS.gene054101.t1 MTR_1g031530 42.969 128 71 2 1 127 189 315 2.75e-34 122
MS.gene054101.t1 MTR_7g082490 49.606 127 57 3 5 127 274 397 6.86e-34 122
MS.gene054101.t1 MTR_1g027250 44.882 127 68 2 1 126 161 286 2.08e-33 120
MS.gene054101.t1 MTR_1g027460 45.669 127 67 2 1 126 188 313 2.79e-33 120
MS.gene054101.t1 MTR_7g082470 48.872 133 56 4 5 129 497 625 3.72e-33 123
MS.gene054101.t1 MTR_7g082380 46.043 139 65 4 1 132 220 355 9.78e-33 119
MS.gene054101.t1 MTR_1g031200 43.750 128 69 3 1 127 360 485 1.30e-32 120
MS.gene054101.t1 MTR_1g027160 44.094 127 69 2 1 126 161 286 3.27e-32 117
MS.gene054101.t1 MTR_7g082510 48.031 127 61 3 3 126 507 631 3.65e-32 120
MS.gene054101.t1 MTR_8g104520 45.185 135 68 3 1 129 503 637 3.87e-32 120
MS.gene054101.t1 MTR_1g110220 45.113 133 70 3 4 134 416 547 7.18e-32 119
MS.gene054101.t1 MTR_1g031510 43.750 128 70 2 1 127 476 602 7.56e-32 119
MS.gene054101.t1 MTR_6g083780 43.066 137 68 3 1 132 512 643 1.21e-31 119
MS.gene054101.t1 MTR_6g083300 43.704 135 71 3 1 132 163 295 2.00e-31 114
MS.gene054101.t1 MTR_6g082830 47.826 138 60 4 1 132 163 294 2.45e-31 114
MS.gene054101.t1 MTR_1g031280 41.406 128 73 2 1 127 505 631 2.45e-31 118
MS.gene054101.t1 MTR_6g083290 42.254 142 77 3 1 139 175 314 4.54e-31 114
MS.gene054101.t1 MTR_1g027320 44.094 127 69 2 1 126 161 286 4.84e-31 114
MS.gene054101.t1 MTR_4g044393 46.269 134 65 4 1 129 693 824 8.18e-31 116
MS.gene054101.t1 MTR_1g027410 46.457 127 66 2 1 126 260 385 9.57e-31 114
MS.gene054101.t1 MTR_6g083210 42.254 142 75 4 1 137 163 302 1.26e-30 112
MS.gene054101.t1 MTR_1g027540 44.094 127 69 2 1 126 263 388 1.50e-30 114
MS.gene054101.t1 MTR_1g026990 44.094 127 69 2 1 126 161 286 1.54e-30 112
MS.gene054101.t1 MTR_7g085860 45.161 124 66 2 5 127 328 450 1.57e-30 114
MS.gene054101.t1 MTR_6g082860 47.826 138 60 4 1 132 219 350 1.69e-30 113
MS.gene054101.t1 MTR_1g028280 42.188 128 72 2 1 127 532 658 1.90e-30 115
MS.gene054101.t1 MTR_1g028280 42.188 128 72 2 1 127 493 619 1.90e-30 115
MS.gene054101.t1 MTR_1g115485 49.206 126 57 3 5 126 524 646 4.74e-30 114
MS.gene054101.t1 MTR_0394s0020 46.269 134 65 4 1 129 233 364 4.75e-30 112
MS.gene054101.t1 MTR_6g082950 40.278 144 81 3 1 141 283 424 4.90e-30 112
MS.gene054101.t1 MTR_6g083760 40.845 142 77 4 1 137 483 622 5.63e-30 114
MS.gene054101.t1 MTR_7g082280 46.457 127 60 3 6 127 591 714 1.45e-29 113
MS.gene054101.t1 MTR_6g083270 43.704 135 71 3 1 132 318 450 1.47e-29 112
MS.gene054101.t1 MTR_1g027990 41.096 146 82 4 1 143 554 698 1.50e-29 113
MS.gene054101.t1 MTR_1g110140 45.238 126 66 3 4 127 218 342 1.60e-29 110
MS.gene054101.t1 MTR_7g082360 46.774 124 61 3 5 126 201 321 1.71e-29 110
MS.gene054101.t1 MTR_6g082870 39.860 143 83 2 1 141 520 661 2.35e-29 112
MS.gene054101.t1 MTR_7g082400 44.186 129 68 2 1 126 243 370 2.54e-29 110
MS.gene054101.t1 MTR_7g082110 46.154 130 63 4 5 129 699 826 3.87e-29 112
MS.gene054101.t1 MTR_7g082300 44.800 125 66 2 5 127 713 836 4.57e-29 112
MS.gene054101.t1 MTR_3g028630 42.748 131 72 3 1 129 258 387 5.13e-29 110
MS.gene054101.t1 MTR_1g027050 41.406 128 72 3 1 126 594 720 6.28e-29 111
MS.gene054101.t1 MTR_1g027140 41.406 128 72 3 1 126 591 717 6.85e-29 111
MS.gene054101.t1 MTR_7g082460 45.312 128 63 3 3 126 511 635 7.02e-29 111
MS.gene054101.t1 MTR_1g110260 42.308 130 64 3 4 127 396 520 7.94e-29 110
MS.gene054101.t1 MTR_1g027680 42.636 129 69 4 1 126 551 677 6.26e-28 108
MS.gene054101.t1 MTR_1g027840 41.085 129 70 4 1 126 187 312 6.56e-28 106
MS.gene054101.t1 MTR_6g045030 40.945 127 73 2 1 126 267 392 8.03e-28 107
MS.gene054101.t1 MTR_1g027930 40.310 129 71 4 1 126 131 256 9.76e-28 104
MS.gene054101.t1 MTR_1g031520 43.307 127 70 2 1 126 473 598 1.05e-27 107
MS.gene054101.t1 MTR_1g027070 42.969 128 70 3 1 126 557 683 1.77e-27 107
MS.gene054101.t1 MTR_1g028100 36.429 140 82 3 1 136 248 384 2.36e-27 105
MS.gene054101.t1 MTR_1g108910 41.985 131 60 3 4 134 204 318 3.34e-27 103
MS.gene054101.t1 MTR_1g031560 41.732 127 72 2 1 126 494 619 3.80e-27 106
MS.gene054101.t1 MTR_1g027830 40.769 130 69 4 1 126 514 639 3.97e-27 106
MS.gene054101.t1 MTR_1g027730 39.695 131 71 4 1 127 187 313 4.85e-27 103
MS.gene054101.t1 MTR_1g028020 33.750 160 96 4 1 153 306 462 6.21e-27 105
MS.gene054101.t1 MTR_1g027440 43.846 130 52 3 1 126 439 551 1.66e-26 104
MS.gene054101.t1 MTR_1g028170 38.168 131 74 3 1 127 275 402 1.82e-26 103
MS.gene054101.t1 MTR_1g110270 40.625 128 67 2 1 126 481 601 2.35e-26 103
MS.gene054101.t1 MTR_1g027030 38.281 128 76 2 1 126 593 719 6.24e-26 102
MS.gene054101.t1 MTR_1g027030 39.062 128 75 2 1 126 543 669 8.24e-26 102
MS.gene054101.t1 MTR_0690s0030 88.679 53 5 1 34 86 1 52 3.06e-25 92.0
MS.gene054101.t1 MTR_1g110230 41.129 124 68 4 14 133 472 594 1.22e-24 99.0
MS.gene054101.t1 MTR_4g073220 37.795 127 74 3 1 126 474 596 4.27e-22 92.0
MS.gene054101.t1 MTR_7g060570 40.769 130 67 5 1 126 499 622 1.87e-21 90.1
MS.gene054101.t1 MTR_1g031220 70.370 54 14 1 1 54 29 80 4.40e-21 82.4
MS.gene054101.t1 MTR_6g083740 38.710 124 65 5 21 137 122 241 8.03e-20 82.8
MS.gene054101.t1 MTR_1g031400 48.571 70 35 1 1 70 179 247 7.25e-19 80.9
MS.gene054101.t1 MTR_1g110160 37.903 124 57 5 14 133 466 573 1.75e-18 81.6
MS.gene054101.t1 MTR_2g036490 34.615 130 76 4 2 127 293 417 5.74e-18 79.7
MS.gene054101.t1 MTR_6g043510 36.184 152 81 8 1 141 648 794 7.84e-18 79.7
MS.gene054101.t1 MTR_2g073250 39.167 120 62 5 2 115 644 758 1.47e-17 79.0
MS.gene054101.t1 MTR_2g080080 34.932 146 84 5 2 141 640 780 3.09e-17 77.8
MS.gene054101.t1 MTR_3g107070 37.143 140 76 5 2 135 632 765 4.18e-17 77.4
MS.gene054101.t1 MTR_1g012550 35.099 151 78 6 2 137 660 805 4.36e-17 77.4
MS.gene054101.t1 MTR_4g114280 32.540 126 78 3 4 126 713 834 7.09e-17 77.0
MS.gene054101.t1 MTR_2g080100 35.664 143 80 6 6 141 612 749 1.28e-16 76.3
MS.gene054101.t1 MTR_2g036500 36.567 134 70 6 1 127 233 358 1.45e-16 75.9
MS.gene054101.t1 MTR_2g036460 33.077 130 78 4 2 127 303 427 1.82e-16 75.5
MS.gene054101.t1 MTR_2g054870 38.525 122 63 4 5 116 272 391 3.66e-16 74.7
MS.gene054101.t1 MTR_2g103810 38.983 118 64 5 2 115 652 765 5.90e-16 74.3
MS.gene054101.t1 MTR_2g036440 35.821 134 71 6 1 127 234 359 5.99e-16 73.9
MS.gene054101.t1 MTR_4g114240 34.677 124 76 3 6 126 701 822 1.51e-15 73.2
MS.gene054101.t1 MTR_2g036430 32.824 131 79 4 1 127 217 342 2.52e-15 72.0
MS.gene054101.t1 MTR_2g073540 38.017 121 67 4 2 118 586 702 2.77e-15 72.4
MS.gene054101.t1 MTR_6g043790 33.594 128 76 3 1 123 653 776 2.93e-15 72.4
MS.gene054101.t1 MTR_2g073520 38.017 121 67 4 2 118 692 808 3.35e-15 72.0
MS.gene054101.t1 MTR_5g033820 35.833 120 70 4 2 117 463 579 5.06e-15 71.6
MS.gene054101.t1 MTR_4g114250 34.646 127 78 5 1 126 685 807 7.09e-15 71.2
MS.gene054101.t1 MTR_4g113710 34.646 127 69 5 1 116 266 389 7.69e-15 70.9
MS.gene054101.t1 MTR_0049s0070 29.452 146 96 3 2 143 395 537 1.46e-14 70.1
MS.gene054101.t1 MTR_4g093140 32.143 140 87 4 2 137 501 636 1.65e-14 70.1
MS.gene054101.t1 MTR_0049s0070 29.452 146 96 3 2 143 458 600 1.69e-14 70.1
MS.gene054101.t1 MTR_0280s0040 34.109 129 76 4 1 124 651 775 1.72e-14 70.1
MS.gene054101.t1 MTR_2g073630 37.391 115 64 4 6 116 792 902 1.78e-14 70.1
MS.gene054101.t1 MTR_8g030500 34.146 123 67 4 5 115 645 765 2.42e-14 69.7
MS.gene054101.t1 MTR_2g008360 31.667 120 76 3 2 117 454 571 2.97e-14 69.3
MS.gene054101.t1 MTR_4g093070 32.450 151 83 5 2 136 507 654 3.28e-14 69.3
MS.gene054101.t1 MTR_5g013130 35.659 129 74 4 2 126 668 791 3.44e-14 69.3
MS.gene054101.t1 MTR_1g099400 34.400 125 66 4 1 117 681 797 3.54e-14 69.3
MS.gene054101.t1 MTR_5g033690 33.333 132 79 3 2 126 470 599 3.92e-14 68.9
MS.gene054101.t1 MTR_4g093110 32.353 136 84 4 6 137 505 636 4.40e-14 68.9
MS.gene054101.t1 MTR_1g031470 37.209 86 52 2 43 127 4 88 5.20e-14 65.1
MS.gene054101.t1 MTR_1g097160 31.667 120 76 2 2 117 465 582 5.85e-14 68.6
MS.gene054101.t1 MTR_5g013070 35.659 129 73 5 5 129 674 796 6.50e-14 68.6
MS.gene054101.t1 MTR_2g073560 37.190 121 68 4 2 118 798 914 1.36e-13 67.4
MS.gene054101.t1 MTR_2g073600 37.190 121 68 4 2 118 822 938 1.83e-13 67.0
MS.gene054101.t1 MTR_2g011150 38.060 134 58 6 6 126 625 746 2.75e-13 66.6
MS.gene054101.t1 MTR_2g011210 32.520 123 80 2 6 127 691 811 4.23e-13 66.2
MS.gene054101.t1 MTR_1g021635 31.724 145 91 5 6 145 523 664 6.33e-13 65.5
MS.gene054101.t1 MTR_5g006160 31.356 118 69 3 2 115 651 760 7.62e-13 65.5
MS.gene054101.t1 MTR_4g114270 34.375 128 77 6 1 126 683 805 1.15e-12 64.7
MS.gene054101.t1 MTR_8g095030 33.613 119 74 2 2 117 434 550 1.17e-12 64.7
MS.gene054101.t1 MTR_4g091570 34.146 123 78 2 6 127 919 1039 1.58e-12 64.3
MS.gene054101.t1 MTR_2g067990 33.588 131 77 5 2 127 876 1001 2.66e-12 63.9
MS.gene054101.t1 MTR_1g021632 33.871 124 75 4 6 126 514 633 2.73e-12 63.5
MS.gene054101.t1 MTR_8g088760 31.429 140 82 5 2 134 449 581 2.78e-12 63.5
MS.gene054101.t1 MTR_2g036480 27.737 137 91 4 5 137 254 386 2.89e-12 63.5
MS.gene054101.t1 MTR_3g011910 36.220 127 69 5 6 126 491 611 3.17e-12 63.5
MS.gene054101.t1 MTR_3g007650 39.344 122 52 4 6 116 689 799 5.07e-12 63.2
MS.gene054101.t1 MTR_1g105710 36.000 125 72 4 6 126 515 635 5.91e-12 62.8
MS.gene054101.t1 MTR_2g064930 37.069 116 63 6 6 116 212 322 8.00e-12 62.0
MS.gene054101.t1 MTR_2g067980 32.500 120 70 4 2 115 900 1014 8.15e-12 62.4
MS.gene054101.t1 MTR_8g011370 31.356 118 75 3 2 115 681 796 8.91e-12 62.4
MS.gene054101.t1 MTR_8g028895 32.520 123 78 3 6 126 122 241 9.03e-12 61.6
MS.gene054101.t1 MTR_8g068050 31.884 138 79 5 2 129 514 646 9.56e-12 62.0
MS.gene054101.t1 MTR_8g068050 31.884 138 79 5 2 129 404 536 1.14e-11 62.0
MS.gene054101.t1 MTR_5g065130 34.400 125 74 3 6 126 504 624 1.45e-11 61.6
MS.gene054101.t1 MTR_0341s0020 33.884 121 73 4 9 126 513 629 1.48e-11 61.6
MS.gene054101.t1 MTR_8g067735 33.613 119 72 3 2 116 518 633 1.48e-11 61.6
MS.gene054101.t1 MTR_2g068650 31.061 132 79 5 2 127 614 739 1.49e-11 61.6
MS.gene054101.t1 MTR_2g089290 33.077 130 79 4 6 131 838 963 1.52e-11 61.6
MS.gene054101.t1 MTR_1g032930 29.921 127 73 5 1 115 656 778 1.83e-11 61.2
MS.gene054101.t1 MTR_1g105700 37.008 127 68 6 6 126 527 647 2.19e-11 61.2
MS.gene054101.t1 MTR_3g037690 35.714 126 51 6 6 116 95 205 2.40e-11 60.1
MS.gene054101.t1 MTR_8g011410 32.203 118 74 3 2 115 683 798 2.55e-11 60.8
MS.gene054101.t1 MTR_3g088640 31.496 127 65 4 6 121 572 687 3.48e-11 60.5
MS.gene054101.t1 MTR_2g008370 30.833 120 76 4 2 117 450 566 3.64e-11 60.5
MS.gene054101.t1 MTR_3g117850 30.328 122 74 5 6 121 442 558 3.91e-11 60.5
MS.gene054101.t1 MTR_2g073640 37.719 114 63 3 6 115 833 942 4.09e-11 60.5
MS.gene054101.t1 MTR_8g052570 34.400 125 74 4 6 126 227 347 4.30e-11 60.1
MS.gene054101.t1 MTR_8g052517 34.400 125 74 4 6 126 227 347 4.30e-11 60.1
MS.gene054101.t1 MTR_2g011240 35.200 125 73 4 6 126 667 787 4.70e-11 60.1
MS.gene054101.t1 MTR_3g117850 30.328 122 74 5 6 121 343 459 4.76e-11 60.1
MS.gene054101.t1 MTR_3g117850 30.328 122 74 5 6 121 313 429 5.33e-11 60.1
MS.gene054101.t1 MTR_8g067930 31.933 119 74 3 2 116 499 614 6.18e-11 59.7
MS.gene054101.t1 MTR_1g105800 32.520 123 78 3 6 126 500 619 6.31e-11 59.7
MS.gene054101.t1 MTR_2g074840 37.391 115 64 3 6 116 827 937 6.47e-11 59.7
MS.gene054101.t1 MTR_1g104555 29.323 133 77 5 2 123 543 669 8.87e-11 59.3
MS.gene054101.t1 MTR_8g067690 31.111 135 84 4 2 132 515 644 8.94e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054101.t1 AT1G70250 46.212 132 66 2 1 127 617 748 1.05e-33 125
MS.gene054101.t1 AT5G38240 45.652 138 69 3 5 137 426 562 2.67e-33 123
MS.gene054101.t1 AT5G38240 45.652 138 69 3 5 137 472 608 3.26e-33 123
MS.gene054101.t1 AT5G38240 45.652 138 69 3 5 137 490 626 3.45e-33 123
MS.gene054101.t1 AT5G38250 39.355 155 86 4 5 154 469 620 7.08e-31 116
MS.gene054101.t1 AT5G38280 45.522 134 67 3 5 132 493 626 1.94e-30 115
MS.gene054101.t1 AT5G38280 45.522 134 67 3 5 132 493 626 2.06e-30 115
MS.gene054101.t1 AT1G66910 45.669 127 63 3 5 126 506 631 4.70e-30 114
MS.gene054101.t1 AT1G66910 45.669 127 63 3 5 126 509 634 5.31e-30 114
MS.gene054101.t1 AT1G66920 45.161 124 66 2 5 126 469 592 2.34e-29 112
MS.gene054101.t1 AT1G66920 45.161 124 66 2 5 126 461 584 2.66e-29 112
MS.gene054101.t1 AT1G66920 45.161 124 66 2 5 126 443 566 2.70e-29 112
MS.gene054101.t1 AT1G67000 41.481 135 66 3 5 126 718 852 1.59e-28 110
MS.gene054101.t1 AT5G38260 42.520 127 69 2 4 126 481 607 2.66e-28 109
MS.gene054101.t1 AT1G66980 41.667 132 70 3 1 126 945 1075 1.13e-27 107
MS.gene054101.t1 AT1G66980 41.667 132 70 3 1 126 991 1121 1.14e-27 107
MS.gene054101.t1 AT1G66980 41.667 132 70 3 1 126 962 1092 1.22e-27 107
MS.gene054101.t1 AT1G66980 41.667 132 70 3 1 126 989 1119 1.25e-27 107
MS.gene054101.t1 AT4G18250 42.222 135 69 4 1 127 514 647 1.88e-27 107
MS.gene054101.t1 AT5G39020 43.651 126 65 3 5 126 657 780 2.30e-27 107
MS.gene054101.t1 AT1G66930 40.741 135 60 3 5 126 477 604 4.63e-27 106
MS.gene054101.t1 AT1G66930 40.741 135 60 3 5 126 508 635 4.74e-27 106
MS.gene054101.t1 AT1G66930 40.741 135 60 3 5 126 717 844 5.04e-27 105
MS.gene054101.t1 AT5G39030 43.307 127 66 4 5 126 659 784 1.19e-26 105
MS.gene054101.t1 AT5G39030 43.307 127 66 4 5 126 653 778 1.27e-26 104
MS.gene054101.t1 AT1G34300 33.333 132 77 4 1 126 642 768 6.99e-17 77.0
MS.gene054101.t1 AT2G19130 37.705 122 64 5 1 115 652 768 1.02e-16 76.6
MS.gene054101.t1 AT4G32300 37.500 120 64 5 2 115 652 766 4.41e-16 74.7
MS.gene054101.t1 AT5G24080 34.615 130 77 3 1 126 689 814 2.52e-15 72.4
MS.gene054101.t1 AT5G24080 34.615 130 77 3 1 126 562 687 3.00e-15 72.4
MS.gene054101.t1 AT5G24080 34.615 130 77 3 1 126 562 687 3.00e-15 72.4
MS.gene054101.t1 AT4G00340 35.537 121 66 5 5 115 622 740 6.73e-15 71.2
MS.gene054101.t1 AT4G00340 35.537 121 66 5 5 115 643 761 7.65e-15 71.2
MS.gene054101.t1 AT5G03140 33.846 130 77 3 2 124 531 658 9.10e-15 70.9
MS.gene054101.t1 AT4G33430 32.500 120 75 3 2 117 450 567 1.32e-14 70.5
MS.gene054101.t1 AT4G04540 35.484 155 79 7 6 154 488 627 1.39e-14 70.5
MS.gene054101.t1 AT1G60800 34.167 120 72 3 2 117 395 511 1.40e-14 70.5
MS.gene054101.t1 AT4G04540 35.484 155 79 7 6 154 517 656 1.41e-14 70.5
MS.gene054101.t1 AT4G33430 32.500 120 75 3 2 117 497 614 1.44e-14 70.5
MS.gene054101.t1 AT1G60800 34.167 120 72 3 2 117 462 578 1.74e-14 70.1
MS.gene054101.t1 AT1G34210 31.667 120 76 2 2 117 466 583 2.95e-14 69.3
MS.gene054101.t1 AT1G34210 31.667 120 76 2 2 117 466 583 2.95e-14 69.3
MS.gene054101.t1 AT1G71830 31.667 120 76 2 2 117 463 580 3.44e-14 69.3
MS.gene054101.t1 AT1G53440 38.843 121 63 4 6 122 831 944 4.63e-14 68.9
MS.gene054101.t1 AT3G25560 31.667 120 75 3 2 117 469 585 8.20e-14 68.2
MS.gene054101.t1 AT3G25560 31.667 120 75 3 2 117 469 585 8.80e-14 68.2
MS.gene054101.t1 AT3G25560 31.667 120 75 3 2 117 470 586 9.03e-14 68.2
MS.gene054101.t1 AT5G01540 38.525 122 57 5 2 116 528 638 1.46e-13 67.4
MS.gene054101.t1 AT4G23290 35.417 144 83 5 6 144 484 622 1.63e-13 67.4
MS.gene054101.t1 AT4G23290 35.417 144 83 5 6 144 527 665 2.00e-13 67.0
MS.gene054101.t1 AT4G23320 34.722 144 84 5 6 144 347 485 2.42e-13 66.6
MS.gene054101.t1 AT4G23320 34.722 144 84 5 6 144 347 485 2.42e-13 66.6
MS.gene054101.t1 AT1G53430 37.190 121 65 4 6 122 792 905 2.49e-13 67.0
MS.gene054101.t1 AT4G23320 34.722 144 84 5 6 144 368 506 2.96e-13 66.6
MS.gene054101.t1 AT1G53430 37.190 121 65 4 6 122 833 946 7.63e-13 65.5
MS.gene054101.t1 AT5G20050 35.075 134 71 4 1 125 269 395 9.58e-13 65.1
MS.gene054101.t1 AT5G51770 32.090 134 85 3 5 133 510 642 1.01e-12 65.1
MS.gene054101.t1 AT4G23250 34.646 127 72 4 6 126 518 639 1.04e-12 65.1
MS.gene054101.t1 AT1G56130 36.441 118 60 7 6 116 657 766 1.72e-12 64.3
MS.gene054101.t1 AT1G29720 31.008 129 81 4 2 126 831 955 1.83e-12 64.3
MS.gene054101.t1 AT1G56130 36.441 118 60 7 6 116 708 817 2.04e-12 64.3
MS.gene054101.t1 AT1G56130 36.441 118 60 7 6 116 856 965 2.07e-12 64.3
MS.gene054101.t1 AT4G21390 32.061 131 86 2 6 135 693 821 4.47e-12 63.2
MS.gene054101.t1 AT2G13800 27.536 138 86 3 2 127 319 454 5.16e-12 62.8
MS.gene054101.t1 AT2G13800 27.536 138 86 3 2 127 319 454 5.16e-12 62.8
MS.gene054101.t1 AT2G13800 27.536 138 86 3 2 127 436 571 5.56e-12 62.8
MS.gene054101.t1 AT2G13800 27.536 138 86 3 2 127 436 571 5.56e-12 62.8
MS.gene054101.t1 AT4G28670 35.484 124 74 3 6 126 498 618 5.60e-12 62.8
MS.gene054101.t1 AT4G23250 34.646 127 72 4 6 126 523 644 5.68e-12 62.8
MS.gene054101.t1 AT4G23250 34.646 127 72 4 6 126 518 639 6.55e-12 62.8
MS.gene054101.t1 AT4G04570 37.008 127 63 6 6 126 512 627 6.77e-12 62.8
MS.gene054101.t1 AT2G13790 27.536 138 86 3 2 127 455 590 7.25e-12 62.4
MS.gene054101.t1 AT4G11460 35.714 126 72 4 6 126 435 556 8.06e-12 62.4
MS.gene054101.t1 AT4G11460 35.714 126 72 4 6 126 510 631 8.21e-12 62.4
MS.gene054101.t1 AT4G11460 35.714 126 72 4 6 126 513 634 8.22e-12 62.4
MS.gene054101.t1 AT4G23150 34.400 125 74 4 6 126 500 620 9.40e-12 62.4
MS.gene054101.t1 AT3G08870 33.333 141 81 7 6 141 554 686 1.09e-11 62.0
MS.gene054101.t1 AT3G08870 33.333 141 81 7 6 141 533 665 1.09e-11 62.0
MS.gene054101.t1 AT1G16670 35.043 117 68 4 6 118 207 319 1.19e-11 61.6
MS.gene054101.t1 AT4G30520 33.333 123 69 5 2 117 460 576 1.93e-11 61.2
MS.gene054101.t1 AT3G14840 32.456 114 69 3 6 115 836 945 2.78e-11 60.8
MS.gene054101.t1 AT4G04490 38.393 112 64 3 6 117 504 610 2.87e-11 60.8
MS.gene054101.t1 AT5G55830 33.333 126 77 4 2 123 527 649 3.00e-11 60.8
MS.gene054101.t1 AT4G11480 34.400 125 75 3 6 126 485 606 3.57e-11 60.5
MS.gene054101.t1 AT4G11480 34.400 125 75 3 6 126 488 609 3.57e-11 60.5
MS.gene054101.t1 AT4G11480 34.400 125 75 3 6 126 493 614 3.61e-11 60.5
MS.gene054101.t1 AT4G21230 31.707 123 73 5 6 123 497 613 3.81e-11 60.5
MS.gene054101.t1 AT1G61610 34.426 122 77 2 6 126 689 808 5.70e-11 60.1
MS.gene054101.t1 AT4G38830 31.746 126 78 4 6 126 509 631 8.03e-11 59.7
MS.gene054101.t1 AT1G56140 32.812 128 71 7 6 126 855 974 9.61e-11 59.3

Find 40 sgRNAs with CRISPR-Local

Find 43 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGCAGAACGTATGAATT+TGG 0.217982 1.3:+14258724 MS.gene054101:CDS
GTTGGTCCGAACGGATTAAT+AGG 0.317720 1.3:-14258674 None:intergenic
TTTGTATTAGTTGTAGTTGT+TGG 0.344417 1.3:-14258692 None:intergenic
TGTATCACAGATTTCATTGC+CGG 0.362988 1.3:-14258617 None:intergenic
CAGTTACGGTATGTTATTGT+TGG 0.408903 1.3:+14258397 MS.gene054101:CDS
AGCAAATTGTGGATCCAGTC+TGG 0.412538 1.3:-14258485 None:intergenic
TGTATCCATGACTGCGGGTA+AGG 0.413358 1.3:+14258301 None:intergenic
TGGATCCACAATTTGCTTGA+AGG 0.451895 1.3:+14258491 MS.gene054101:CDS
CGGTATGTTATTGTTGGAGA+TGG 0.459831 1.3:+14258403 MS.gene054101:CDS
ATGGCACCCTTTGCATCCTC+CGG 0.463651 1.3:+14258598 MS.gene054101:CDS
AAAGTGCCTATTAATCCGTT+CGG 0.481640 1.3:+14258668 MS.gene054101:CDS
TCTGTGATACAAATGCTTCA+AGG 0.482007 1.3:+14258629 MS.gene054101:CDS
GAGGATGCAAAGGGTGCCAT+TGG 0.488438 1.3:-14258595 None:intergenic
TTCATTGCCGGAGGATGCAA+AGG 0.499402 1.3:-14258605 None:intergenic
ATGTTATTGTTGGAGATGGT+TGG 0.500053 1.3:+14258407 MS.gene054101:CDS
AATTGGCAACTGTGGGACTT+TGG 0.503564 1.3:+14258567 MS.gene054101:CDS
AAATCTCCGTCTTCATCGAT+AGG 0.516182 1.3:-14258530 None:intergenic
CTCCTCCTTCAAGCAAATTG+TGG 0.532741 1.3:-14258496 None:intergenic
GTATCCATGACTGCGGGTAA+GGG 0.534564 1.3:+14258302 None:intergenic
ATACAAATGCTTCAAGGAGA+GGG 0.537480 1.3:+14258635 MS.gene054101:CDS
GTTGTAGTTGTTGGTCCGAA+CGG 0.541108 1.3:-14258683 None:intergenic
AAGTCGCATATATACAGTTA+CGG 0.549994 1.3:+14258383 MS.gene054101:CDS
TGTTCCCTTACCCGCAGTCA+TGG 0.551766 1.3:-14258306 None:intergenic
TACAAATGCTTCAAGGAGAG+GGG 0.568086 1.3:+14258636 MS.gene054101:CDS
AATCTCCGTCTTCATCGATA+GGG 0.568726 1.3:-14258529 None:intergenic
AGAACGTATGAATTTGGAGC+TGG 0.590068 1.3:+14258730 MS.gene054101:CDS
AGTATTGTATCCATGACTGC+GGG 0.591782 1.3:+14258296 None:intergenic
TTATTGTTGGAGATGGTTGG+AGG 0.596349 1.3:+14258410 MS.gene054101:CDS
TACAAGTTGAGTATCCAGAC+TGG 0.599590 1.3:+14258471 MS.gene054101:CDS
ATCCACAATTTGCTTGAAGG+AGG 0.604858 1.3:+14258494 MS.gene054101:CDS
ACTGCGGGTAAGGGAACAGT+AGG 0.605174 1.3:+14258311 MS.gene054101:CDS
CATATCCCTATCGATGAAGA+CGG 0.614015 1.3:+14258524 MS.gene054101:CDS
TAAGGGAACAGTAGGCTACA+TGG 0.614376 1.3:+14258319 MS.gene054101:CDS
ATCACAGATTTCATTGCCGG+AGG 0.623506 1.3:-14258614 None:intergenic
ACGTATGAATTTGGAGCTGG+AGG 0.636351 1.3:+14258733 MS.gene054101:CDS
GATACAAATGCTTCAAGGAG+AGG 0.641717 1.3:+14258634 MS.gene054101:CDS
TGGGACTTTGGTGTATCCAA+TGG 0.645612 1.3:+14258579 MS.gene054101:CDS
TCATTGCCGGAGGATGCAAA+GGG 0.648509 1.3:-14258604 None:intergenic
ACAAATGCTTCAAGGAGAGG+GGG 0.654010 1.3:+14258637 MS.gene054101:CDS
AAGTATTGTATCCATGACTG+CGG 0.657076 1.3:+14258295 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGAATTCCAAAAAAAT+TGG + chr1.3:14258550-14258569 MS.gene054101:CDS 15.0%
!! AAGAATACAAAAACAATTAG+TGG + chr1.3:14258437-14258456 MS.gene054101:CDS 20.0%
!!! AAGTTTTTTCAAGAAACTTT+GGG + chr1.3:14258348-14258367 MS.gene054101:CDS 20.0%
! AAGTTTCTTGAAAAAACTTC+AGG - chr1.3:14258347-14258366 None:intergenic 25.0%
! TTTGTATTAGTTGTAGTTGT+TGG - chr1.3:14258695-14258714 None:intergenic 25.0%
!!! GAAGTTTTTTCAAGAAACTT+TGG + chr1.3:14258347-14258366 MS.gene054101:CDS 25.0%
AAGTCGCATATATACAGTTA+CGG + chr1.3:14258383-14258402 MS.gene054101:CDS 30.0%
ATACAAATGCTTCAAGGAGA+GGG + chr1.3:14258635-14258654 MS.gene054101:CDS 35.0%
ATGTTATTGTTGGAGATGGT+TGG + chr1.3:14258407-14258426 MS.gene054101:CDS 35.0%
CAGTTACGGTATGTTATTGT+TGG + chr1.3:14258397-14258416 MS.gene054101:CDS 35.0%
CCAAAAAAATTGGCAACTGT+GGG + chr1.3:14258560-14258579 MS.gene054101:CDS 35.0%
TCCAAAAAAATTGGCAACTG+TGG + chr1.3:14258559-14258578 MS.gene054101:CDS 35.0%
TCTGTGATACAAATGCTTCA+AGG + chr1.3:14258629-14258648 MS.gene054101:CDS 35.0%
TGTATCACAGATTTCATTGC+CGG - chr1.3:14258620-14258639 None:intergenic 35.0%
TGTTGCAGAACGTATGAATT+TGG + chr1.3:14258724-14258743 MS.gene054101:CDS 35.0%
! AAAGTGCCTATTAATCCGTT+CGG + chr1.3:14258668-14258687 MS.gene054101:CDS 35.0%
AAATCTCCGTCTTCATCGAT+AGG - chr1.3:14258533-14258552 None:intergenic 40.0%
AATCTCCGTCTTCATCGATA+GGG - chr1.3:14258532-14258551 None:intergenic 40.0%
CATATCCCTATCGATGAAGA+CGG + chr1.3:14258524-14258543 MS.gene054101:CDS 40.0%
CGGTATGTTATTGTTGGAGA+TGG + chr1.3:14258403-14258422 MS.gene054101:CDS 40.0%
GATACAAATGCTTCAAGGAG+AGG + chr1.3:14258634-14258653 MS.gene054101:CDS 40.0%
TACAAATGCTTCAAGGAGAG+GGG + chr1.3:14258636-14258655 MS.gene054101:CDS 40.0%
TTATTGTTGGAGATGGTTGG+AGG + chr1.3:14258410-14258429 MS.gene054101:CDS 40.0%
! AGAACGTATGAATTTGGAGC+TGG + chr1.3:14258730-14258749 MS.gene054101:CDS 40.0%
! ATCCACAATTTGCTTGAAGG+AGG + chr1.3:14258494-14258513 MS.gene054101:CDS 40.0%
! TACAAGTTGAGTATCCAGAC+TGG + chr1.3:14258471-14258490 MS.gene054101:CDS 40.0%
! TGGATCCACAATTTGCTTGA+AGG + chr1.3:14258491-14258510 MS.gene054101:CDS 40.0%
!!! CCCACAGTTGCCAATTTTTT+TGG - chr1.3:14258563-14258582 None:intergenic 40.0%
AATTGGCAACTGTGGGACTT+TGG + chr1.3:14258567-14258586 MS.gene054101:CDS 45.0%
ACAAATGCTTCAAGGAGAGG+GGG + chr1.3:14258637-14258656 MS.gene054101:CDS 45.0%
AGCAAATTGTGGATCCAGTC+TGG - chr1.3:14258488-14258507 None:intergenic 45.0%
ATCACAGATTTCATTGCCGG+AGG - chr1.3:14258617-14258636 None:intergenic 45.0%
CTCCTCCTTCAAGCAAATTG+TGG - chr1.3:14258499-14258518 None:intergenic 45.0%
GTTGTAGTTGTTGGTCCGAA+CGG - chr1.3:14258686-14258705 None:intergenic 45.0%
TAAGGGAACAGTAGGCTACA+TGG + chr1.3:14258319-14258338 MS.gene054101:CDS 45.0%
! ACGTATGAATTTGGAGCTGG+AGG + chr1.3:14258733-14258752 MS.gene054101:CDS 45.0%
! TGGGACTTTGGTGTATCCAA+TGG + chr1.3:14258579-14258598 MS.gene054101:CDS 45.0%
!! GTTGGTCCGAACGGATTAAT+AGG - chr1.3:14258677-14258696 None:intergenic 45.0%
TCATTGCCGGAGGATGCAAA+GGG - chr1.3:14258607-14258626 None:intergenic 50.0%
TTCATTGCCGGAGGATGCAA+AGG - chr1.3:14258608-14258627 None:intergenic 50.0%
ACTGCGGGTAAGGGAACAGT+AGG + chr1.3:14258311-14258330 MS.gene054101:CDS 55.0%
ATGGCACCCTTTGCATCCTC+CGG + chr1.3:14258598-14258617 MS.gene054101:CDS 55.0%
!! GAGGATGCAAAGGGTGCCAT+TGG - chr1.3:14258598-14258617 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 14258308 14258775 14258308 ID=MS.gene054101
chr1.3 mRNA 14258308 14258775 14258308 ID=MS.gene054101.t1;Parent=MS.gene054101
chr1.3 exon 14258308 14258775 14258308 ID=MS.gene054101.t1.exon1;Parent=MS.gene054101.t1
chr1.3 CDS 14258308 14258775 14258308 ID=cds.MS.gene054101.t1;Parent=MS.gene054101.t1
Gene Sequence

>MS.gene054101

ATGACTGCGGGTAAGGGAACAGTAGGCTACATGGCACCTGAAGTTTTTTCAAGAAACTTTGGGAATGTCTCTTATAAGTCGCATATATACAGTTACGGTATGTTATTGTTGGAGATGGTTGGAGGAAGAAAGAATACAAAAACAATTAGTGGTGAAGAAAATATACAAGTTGAGTATCCAGACTGGATCCACAATTTGCTTGAAGGAGGAGATATACATATCCCTATCGATGAAGACGGAGATTTTAGAATTCCAAAAAAATTGGCAACTGTGGGACTTTGGTGTATCCAATGGCACCCTTTGCATCCTCCGGCAATGAAATCTGTGATACAAATGCTTCAAGGAGAGGGGGACAAGTTAAAAGTGCCTATTAATCCGTTCGGACCAACAACTACAACTAATACAAATGCTAATATTGTTGCAGAACGTATGAATTTGGAGCTGGAGGTGATTGAAGAATTAGAATAA
Protein sequence

>MS.gene054101.t1

MTAGKGTVGYMAPEVFSRNFGNVSYKSHIYSYGMLLLEMVGGRKNTKTISGEENIQVEYPDWIHNLLEGGDIHIPIDEDGDFRIPKKLATVGLWCIQWHPLHPPAMKSVIQMLQGEGDKLKVPINPFGPTTTTNTNANIVAERMNLELEVIEELE