Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054603.t1 | RHN70239.1 | 86.6 | 439 | 37 | 3 | 27 | 444 | 1 | 438 | 1.50E-206 | 728.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054603.t1 | Q9S7T8 | 53.3 | 381 | 173 | 3 | 66 | 442 | 11 | 390 | 3.1e-115 | 416.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054603.t1 | A0A396IX06 | 86.6 | 439 | 37 | 3 | 27 | 444 | 1 | 438 | 1.1e-206 | 728.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene054603 | PPI |
| MS.gene054603 | MS.gene045585 | PPI |
| MS.gene065945 | MS.gene054603 | PPI |
| MS.gene054603 | MS.gene065944 | PPI |
| MS.gene054603 | MS.gene031697 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054603.t1 | MTR_3g101030 | 87.209 | 430 | 36 | 3 | 33 | 444 | 1 | 429 | 0.0 | 749 |
| MS.gene054603.t1 | MTR_3g101010 | 77.749 | 391 | 81 | 3 | 56 | 444 | 3 | 389 | 0.0 | 586 |
| MS.gene054603.t1 | MTR_3g018740 | 70.543 | 387 | 106 | 4 | 59 | 442 | 5 | 386 | 0.0 | 533 |
| MS.gene054603.t1 | MTR_3g101050 | 72.040 | 397 | 88 | 8 | 52 | 443 | 19 | 397 | 0.0 | 527 |
| MS.gene054603.t1 | MTR_4g045707 | 69.634 | 382 | 110 | 4 | 65 | 444 | 11 | 388 | 0.0 | 523 |
| MS.gene054603.t1 | MTR_8g027395 | 65.915 | 399 | 126 | 4 | 48 | 444 | 7 | 397 | 0.0 | 515 |
| MS.gene054603.t1 | MTR_8g461160 | 64.872 | 390 | 132 | 3 | 57 | 442 | 4 | 392 | 1.04e-175 | 497 |
| MS.gene054603.t1 | MTR_3g101180 | 64.232 | 397 | 131 | 5 | 56 | 442 | 3 | 398 | 3.55e-174 | 493 |
| MS.gene054603.t1 | MTR_8g027420 | 65.206 | 388 | 115 | 5 | 59 | 444 | 6 | 375 | 1.01e-172 | 489 |
| MS.gene054603.t1 | MTR_7g451890 | 62.663 | 383 | 139 | 2 | 66 | 444 | 20 | 402 | 1.15e-172 | 490 |
| MS.gene054603.t1 | MTR_7g047780 | 63.446 | 383 | 136 | 2 | 66 | 444 | 20 | 402 | 6.83e-171 | 485 |
| MS.gene054603.t1 | MTR_3g048000 | 64.136 | 382 | 112 | 6 | 64 | 442 | 31 | 390 | 6.69e-168 | 477 |
| MS.gene054603.t1 | MTR_4g088525 | 65.668 | 367 | 118 | 3 | 79 | 443 | 8 | 368 | 4.45e-167 | 474 |
| MS.gene054603.t1 | MTR_7g050750 | 61.619 | 383 | 143 | 2 | 66 | 444 | 14 | 396 | 1.29e-166 | 474 |
| MS.gene054603.t1 | MTR_7g050810 | 62.078 | 385 | 138 | 3 | 66 | 444 | 22 | 404 | 3.01e-166 | 474 |
| MS.gene054603.t1 | MTR_3g101130 | 61.804 | 377 | 141 | 2 | 69 | 444 | 15 | 389 | 9.51e-165 | 469 |
| MS.gene054603.t1 | MTR_2g046030 | 63.333 | 390 | 129 | 7 | 59 | 442 | 5 | 386 | 2.82e-162 | 463 |
| MS.gene054603.t1 | MTR_2g045980 | 63.590 | 390 | 128 | 7 | 59 | 442 | 5 | 386 | 1.13e-161 | 461 |
| MS.gene054603.t1 | MTR_4g088535 | 63.636 | 385 | 115 | 6 | 57 | 439 | 5 | 366 | 1.92e-161 | 461 |
| MS.gene054603.t1 | MTR_3g015620 | 62.113 | 388 | 118 | 6 | 59 | 442 | 16 | 378 | 8.04e-151 | 433 |
| MS.gene054603.t1 | MTR_3g102920 | 57.784 | 379 | 120 | 5 | 68 | 442 | 66 | 408 | 1.77e-138 | 403 |
| MS.gene054603.t1 | MTR_3g100995 | 72.941 | 255 | 68 | 1 | 190 | 444 | 11 | 264 | 3.18e-136 | 392 |
| MS.gene054603.t1 | MTR_3g101200 | 52.911 | 395 | 157 | 5 | 50 | 442 | 23 | 390 | 8.70e-131 | 383 |
| MS.gene054603.t1 | MTR_3g101190 | 53.425 | 365 | 101 | 4 | 84 | 444 | 13 | 312 | 3.41e-123 | 360 |
| MS.gene054603.t1 | MTR_3g018747 | 69.615 | 260 | 61 | 3 | 186 | 442 | 9 | 253 | 6.42e-122 | 355 |
| MS.gene054603.t1 | MTR_7g050830 | 56.169 | 308 | 104 | 2 | 66 | 353 | 22 | 318 | 3.88e-113 | 335 |
| MS.gene054603.t1 | MTR_3g100010 | 55.937 | 320 | 93 | 2 | 85 | 371 | 40 | 344 | 1.26e-112 | 335 |
| MS.gene054603.t1 | MTR_3g015760 | 62.782 | 266 | 97 | 2 | 178 | 442 | 15 | 279 | 1.89e-105 | 314 |
| MS.gene054603.t1 | MTR_3g111160 | 68.095 | 210 | 62 | 2 | 238 | 444 | 13 | 220 | 1.15e-91 | 277 |
| MS.gene054603.t1 | MTR_3g100520 | 59.910 | 222 | 72 | 3 | 227 | 444 | 1 | 209 | 4.85e-87 | 265 |
| MS.gene054603.t1 | MTR_3g099970 | 66.154 | 195 | 49 | 2 | 186 | 379 | 20 | 198 | 3.99e-84 | 256 |
| MS.gene054603.t1 | MTR_3g114310 | 40.648 | 401 | 211 | 12 | 61 | 444 | 20 | 410 | 1.60e-83 | 263 |
| MS.gene054603.t1 | MTR_3g101110 | 58.475 | 236 | 66 | 4 | 189 | 418 | 71 | 280 | 1.62e-81 | 253 |
| MS.gene054603.t1 | MTR_2g046410 | 62.621 | 206 | 69 | 4 | 243 | 442 | 144 | 347 | 2.61e-79 | 249 |
| MS.gene054603.t1 | MTR_3g101020 | 64.324 | 185 | 41 | 2 | 260 | 444 | 1 | 160 | 6.12e-76 | 234 |
| MS.gene054603.t1 | MTR_3g111150 | 59.322 | 177 | 46 | 2 | 64 | 240 | 3 | 153 | 5.59e-61 | 196 |
| MS.gene054603.t1 | MTR_3g101150 | 61.392 | 158 | 55 | 2 | 292 | 443 | 1 | 158 | 4.14e-59 | 191 |
| MS.gene054603.t1 | MTR_3g102870 | 57.233 | 159 | 66 | 1 | 251 | 407 | 3 | 161 | 5.70e-56 | 183 |
| MS.gene054603.t1 | MTR_3g100990 | 64.844 | 128 | 42 | 2 | 59 | 186 | 5 | 129 | 9.63e-44 | 160 |
| MS.gene054603.t1 | MTR_4g093550 | 62.353 | 85 | 30 | 1 | 61 | 145 | 7 | 89 | 3.05e-25 | 99.4 |
| MS.gene054603.t1 | MTR_6g046890 | 61.842 | 76 | 26 | 1 | 78 | 153 | 15 | 87 | 4.13e-19 | 84.0 |
| MS.gene054603.t1 | MTR_3g101140 | 64.615 | 65 | 22 | 1 | 381 | 444 | 52 | 116 | 3.64e-18 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054603.t1 | AT1G47710 | 51.980 | 404 | 186 | 4 | 43 | 442 | 18 | 417 | 1.14e-147 | 427 |
| MS.gene054603.t1 | AT1G47710 | 53.141 | 382 | 174 | 3 | 65 | 442 | 10 | 390 | 2.60e-147 | 425 |
| MS.gene054603.t1 | AT3G45220 | 47.558 | 389 | 186 | 6 | 64 | 441 | 9 | 390 | 1.17e-121 | 360 |
| MS.gene054603.t1 | AT2G25240 | 48.438 | 384 | 182 | 7 | 64 | 441 | 9 | 382 | 1.71e-117 | 349 |
| MS.gene054603.t1 | AT2G26390 | 46.770 | 387 | 188 | 6 | 64 | 441 | 9 | 386 | 5.36e-114 | 340 |
| MS.gene054603.t1 | AT2G14540 | 44.118 | 408 | 196 | 7 | 40 | 441 | 16 | 397 | 3.52e-102 | 310 |
| MS.gene054603.t1 | AT1G62170 | 44.565 | 368 | 175 | 5 | 83 | 443 | 88 | 433 | 6.04e-102 | 311 |
| MS.gene054603.t1 | AT1G64030 | 43.411 | 387 | 192 | 7 | 61 | 441 | 6 | 371 | 3.35e-97 | 297 |
| MS.gene054603.t1 | AT2G35580 | 45.187 | 374 | 174 | 10 | 79 | 441 | 18 | 371 | 1.01e-96 | 295 |
| MS.gene054603.t1 | AT1G62170 | 40.898 | 401 | 175 | 6 | 83 | 443 | 88 | 466 | 4.88e-95 | 294 |
| MS.gene054603.t1 | AT1G64010 | 47.222 | 216 | 92 | 4 | 227 | 441 | 1 | 195 | 4.10e-63 | 202 |
| MS.gene054603.t1 | AT1G64010 | 46.766 | 201 | 85 | 4 | 242 | 441 | 2 | 181 | 3.45e-56 | 184 |
| MS.gene054603.t1 | AT1G62160 | 41.209 | 182 | 84 | 4 | 264 | 443 | 60 | 220 | 1.78e-36 | 134 |
| MS.gene054603.t1 | AT1G63280 | 57.391 | 115 | 45 | 2 | 186 | 298 | 8 | 120 | 3.30e-36 | 129 |
| MS.gene054603.t1 | AT1G51330 | 51.351 | 111 | 51 | 2 | 185 | 292 | 30 | 140 | 2.92e-26 | 105 |
| MS.gene054603.t1 | AT1G64020 | 31.707 | 123 | 81 | 3 | 56 | 177 | 1 | 121 | 3.50e-15 | 72.4 |
Find 95 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAACTTTGCTTGAGAAAT+TGG | 0.152643 | 3.4:+88990706 | MS.gene054603:CDS |
| ATTAGACACAATTTGTTTAA+AGG | 0.202108 | 3.4:-88990143 | None:intergenic |
| TGGCCAAAGAAGTTAATTTA+TGG | 0.206086 | 3.4:+88990366 | MS.gene054603:CDS |
| CTTGTTCCGGTGAGATTCTT+TGG | 0.228600 | 3.4:-88989882 | None:intergenic |
| AGCCCATAAATTAACTTCTT+TGG | 0.247412 | 3.4:-88990369 | None:intergenic |
| TTATCTTCGCCTTGCTTATA+AGG | 0.250540 | 3.4:-88990635 | None:intergenic |
| CCAAGGTTCAATATTTCATT+TGG | 0.296966 | 3.4:+88990797 | MS.gene054603:CDS |
| CAGGTGCTCAATCCTCTTGC+TGG | 0.306550 | 3.4:+88991106 | MS.gene054603:CDS |
| TGCGGTGGCTGCAACAGCTT+CGG | 0.337942 | 3.4:-88990966 | None:intergenic |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.344851 | 3.4:+88990680 | MS.gene054603:CDS |
| TTCTTTGGAGAAAAGATGTT+TGG | 0.357142 | 3.4:-88989867 | None:intergenic |
| GGCCAAAGAAGTTAATTTAT+GGG | 0.357206 | 3.4:+88990367 | MS.gene054603:CDS |
| CAATGGAGGTCTGACTAAAA+TGG | 0.358287 | 3.4:+88990871 | MS.gene054603:CDS |
| GAGTGGAAGTAGGCGACTTT+AGG | 0.364214 | 3.4:+88990771 | MS.gene054603:CDS |
| ATGGTGGTTGTTGGCGGATT+CGG | 0.388527 | 3.4:-88989822 | None:intergenic |
| ACTGGAACAATCATCTTTGT+TGG | 0.397026 | 3.4:+88991082 | MS.gene054603:CDS |
| GCCAATTTCTCAAGCAAAGT+TGG | 0.399047 | 3.4:-88990707 | None:intergenic |
| ATATCGCTCGGAGTTGTATT+CGG | 0.407795 | 3.4:-88989752 | None:intergenic |
| AAAGGAAGGCTGAAGAGAAA+TGG | 0.417918 | 3.4:-88990125 | None:intergenic |
| GATGTTGAGTGGGATCGATT+TGG | 0.424463 | 3.4:-88989775 | None:intergenic |
| AATGACGGAGACGAGCTTAG+AGG | 0.426551 | 3.4:-88990035 | None:intergenic |
| CAAATGAAATATTGAACCTT+GGG | 0.426942 | 3.4:-88990796 | None:intergenic |
| ATAACACGATGTTCTTGTTC+CGG | 0.429260 | 3.4:-88989895 | None:intergenic |
| AACAATCATCTTTGTTGGAC+AGG | 0.442686 | 3.4:+88991087 | MS.gene054603:CDS |
| TCTCTAATCATAAACAAGAA+AGG | 0.443816 | 3.4:-88991052 | None:intergenic |
| TTTATTGACGTAAATGAAGA+AGG | 0.449783 | 3.4:+88990941 | MS.gene054603:CDS |
| TAACCGAGTTTCCATTCAAA+AGG | 0.458909 | 3.4:-88990541 | None:intergenic |
| AACGCTGCTATGGTGGTTGT+TGG | 0.459988 | 3.4:-88989831 | None:intergenic |
| GTTGAGTTGATCGGTGGAGT+TGG | 0.460115 | 3.4:-88990005 | None:intergenic |
| CTCTAATCATAAACAAGAAA+GGG | 0.468439 | 3.4:-88991051 | None:intergenic |
| GTTGATCGGTGGAGTTGGAT+TGG | 0.478007 | 3.4:-88990000 | None:intergenic |
| CTCAAAGACGGTGCTCCCGC+TGG | 0.478601 | 3.4:+88990058 | MS.gene054603:CDS |
| ATGATTAGAGAAGAATTGAC+TGG | 0.486911 | 3.4:+88991064 | MS.gene054603:CDS |
| TTCTTCCAAATGCAAAAGAT+GGG | 0.486946 | 3.4:+88990681 | MS.gene054603:CDS |
| CAATGATGCTTAGTACAACT+TGG | 0.487843 | 3.4:-88989931 | None:intergenic |
| TTCTTCCTTACGAGTCATGA+AGG | 0.493936 | 3.4:-88990570 | None:intergenic |
| CTTCGCCTTGCTTATAAGGA+AGG | 0.494680 | 3.4:-88990631 | None:intergenic |
| AACGAAGAGCGTGAAGTAGC+AGG | 0.496618 | 3.4:-88989681 | None:intergenic |
| GACACAATTTGTTTAAAGGA+AGG | 0.503508 | 3.4:-88990139 | None:intergenic |
| AGGTGCTCAATCCTCTTGCT+GGG | 0.503743 | 3.4:+88991107 | MS.gene054603:CDS |
| GTACTAAGCATCATTGCTGC+TGG | 0.503878 | 3.4:+88989938 | MS.gene054603:CDS |
| GATCGGTGGAGTTGGATTGG+AGG | 0.508691 | 3.4:-88989997 | None:intergenic |
| TGCATTAGCAATGATTAGCC+TGG | 0.510550 | 3.4:-88990453 | None:intergenic |
| CCAAATGAAATATTGAACCT+TGG | 0.513068 | 3.4:-88990797 | None:intergenic |
| AAAGATGTTTGGCGATGGTG+AGG | 0.524270 | 3.4:-88989856 | None:intergenic |
| GGAGACGAGCTTAGAGGCGA+AGG | 0.528835 | 3.4:-88990029 | None:intergenic |
| GCTGCTATGGTGGTTGTTGG+CGG | 0.529517 | 3.4:-88989828 | None:intergenic |
| GCTACAAAGTCTAGTCGAGT+TGG | 0.531637 | 3.4:-88991022 | None:intergenic |
| CTTGGCCTTCCTTATAAGCA+AGG | 0.532609 | 3.4:+88990626 | MS.gene054603:CDS |
| AGTACAACTTGGAGCGAAAG+TGG | 0.534886 | 3.4:-88989920 | None:intergenic |
| GAGAGACGAGGTCCTCCAGC+GGG | 0.535745 | 3.4:-88990073 | None:intergenic |
| TTCTGTTGATTTCAAGAACA+AGG | 0.539763 | 3.4:+88990186 | MS.gene054603:CDS |
| TGTTCCCTTCATGACTCGTA+AGG | 0.541335 | 3.4:+88990565 | MS.gene054603:CDS |
| TCTGATATGCTGAAGGAGCT+AGG | 0.542423 | 3.4:+88990830 | MS.gene054603:CDS |
| CACTATACTTCAAAGGAATG+TGG | 0.548921 | 3.4:+88990474 | MS.gene054603:CDS |
| TGGGCTGCAAAAGAGACAAA+TGG | 0.552308 | 3.4:+88990386 | MS.gene054603:CDS |
| ATCATTGCTGCTGGTTCTGA+CGG | 0.554070 | 3.4:+88989947 | MS.gene054603:CDS |
| AAGTAGCAGGCAAGGTCGAT+TGG | 0.554084 | 3.4:-88989668 | None:intergenic |
| TTAAAGAACTTCTTCCTCCA+CGG | 0.555249 | 3.4:+88990414 | MS.gene054603:CDS |
| GCTAATGCACTATACTTCAA+AGG | 0.558208 | 3.4:+88990467 | MS.gene054603:CDS |
| CGCTAAAATCACCCAGCAAG+AGG | 0.568564 | 3.4:-88991118 | None:intergenic |
| GAGAAGCTGCTGATGTTGAG+TGG | 0.568947 | 3.4:-88989786 | None:intergenic |
| GTCAGACCTCCATTGGTGAA+AGG | 0.571927 | 3.4:-88990863 | None:intergenic |
| TGGTGAGGGAAACGCTGCTA+TGG | 0.575851 | 3.4:-88989841 | None:intergenic |
| AGAGCGTGAAGTAGCAGGCA+AGG | 0.577102 | 3.4:-88989676 | None:intergenic |
| TGTTGGCGGATTCGGATCGA+AGG | 0.581182 | 3.4:-88989814 | None:intergenic |
| AAAGACGGTGCTCCCGCTGG+AGG | 0.583396 | 3.4:+88990061 | MS.gene054603:CDS |
| GTCTCCGTCATTCTCAAAGA+CGG | 0.586205 | 3.4:+88990046 | MS.gene054603:CDS |
| AAGATGTTTGGCGATGGTGA+GGG | 0.596429 | 3.4:-88989855 | None:intergenic |
| CCACATGATAGAGTGGAAGT+AGG | 0.598991 | 3.4:+88990761 | MS.gene054603:CDS |
| TAGTCGAGTTGGAAAACTCA+TGG | 0.599825 | 3.4:-88991011 | None:intergenic |
| GGCGAAGGAGTTGAGTTGAT+CGG | 0.602516 | 3.4:-88990014 | None:intergenic |
| TAGGCGACTTTAGGATCCCA+AGG | 0.602547 | 3.4:+88990780 | MS.gene054603:CDS |
| TGAAACTTCTGATATGCTGA+AGG | 0.602682 | 3.4:+88990823 | MS.gene054603:CDS |
| AGTGATTACTTCAGCTGCGG+TGG | 0.607613 | 3.4:-88990981 | None:intergenic |
| GTCAAGAAGCTGTTGTTGTG+TGG | 0.616691 | 3.4:-88989972 | None:intergenic |
| AGAAGCTGCTGATGTTGAGT+GGG | 0.617202 | 3.4:-88989785 | None:intergenic |
| GGATCGATTTGGATATCGCT+CGG | 0.618610 | 3.4:-88989764 | None:intergenic |
| TCTTCCTTACGAGTCATGAA+GGG | 0.620041 | 3.4:-88990569 | None:intergenic |
| AGAACTTCTTCCTCCACGGT+CGG | 0.622745 | 3.4:+88990418 | MS.gene054603:CDS |
| AGAGAGACGAGGTCCTCCAG+CGG | 0.627432 | 3.4:-88990074 | None:intergenic |
| CAAGCTTCCACATGATAGAG+TGG | 0.627897 | 3.4:+88990754 | MS.gene054603:CDS |
| GGTTTGAAAGGCAAGTGAAG+TGG | 0.629370 | 3.4:+88990346 | MS.gene054603:intron |
| GTTAAGCTGTTAACCGACCG+TGG | 0.638349 | 3.4:-88990431 | None:intergenic |
| TAATCATAAACAAGAAAGGG+TGG | 0.640706 | 3.4:-88991048 | None:intergenic |
| GGTCGGTTAACAGCTTAACC+AGG | 0.645456 | 3.4:+88990435 | MS.gene054603:CDS |
| TGAGGGAAACGCTGCTATGG+TGG | 0.653513 | 3.4:-88989838 | None:intergenic |
| CCTACTTCCACTCTATCATG+TGG | 0.655871 | 3.4:-88990761 | None:intergenic |
| GGAGAAAAGATGTTTGGCGA+TGG | 0.656877 | 3.4:-88989861 | None:intergenic |
| GCTAGTGATTACTTCAGCTG+CGG | 0.657209 | 3.4:-88990984 | None:intergenic |
| AGCACCGTCTTTGAGAATGA+CGG | 0.659705 | 3.4:-88990050 | None:intergenic |
| TATGCTGAAGGAGCTAGGCG+TGG | 0.693931 | 3.4:+88990835 | MS.gene054603:CDS |
| GAAGGAGTTGAGTTGATCGG+TGG | 0.698626 | 3.4:-88990011 | None:intergenic |
| CCATCGACAAAAGAGAGACG+AGG | 0.708769 | 3.4:-88990085 | None:intergenic |
| AAGCTGTTAACCGACCGTGG+AGG | 0.782630 | 3.4:-88990428 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAAATTTTAACAAAATCA+GGG | - | chr3.4:88990259-88990278 | None:intergenic | 15.0% |
| !!! | ATTGATTTTGAATTTTGATA+TGG | + | chr3.4:88990325-88990344 | MS.gene054603:intron | 15.0% |
| !!! | TACAAAATTTTAACAAAATC+AGG | - | chr3.4:88990260-88990279 | None:intergenic | 15.0% |
| !!! | ATTAGACACAATTTGTTTAA+AGG | - | chr3.4:88990146-88990165 | None:intergenic | 20.0% |
| !!! | GAATGATTTTAGAAATACAT+AGG | - | chr3.4:88990913-88990932 | None:intergenic | 20.0% |
| ! | CAAATGAAATATTGAACCTT+GGG | - | chr3.4:88990799-88990818 | None:intergenic | 25.0% |
| ! | CTCTAATCATAAACAAGAAA+GGG | - | chr3.4:88991054-88991073 | None:intergenic | 25.0% |
| ! | TCTCTAATCATAAACAAGAA+AGG | - | chr3.4:88991055-88991074 | None:intergenic | 25.0% |
| ! | TTTATTGACGTAAATGAAGA+AGG | + | chr3.4:88990941-88990960 | MS.gene054603:CDS | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | + | chr3.4:88990530-88990549 | MS.gene054603:CDS | 25.0% |
| !!! | GAATTTTGATATGGTTTGAA+AGG | + | chr3.4:88990334-88990353 | MS.gene054603:intron | 25.0% |
| !!! | TTCGATGATTTTAAAGTTCT+TGG | + | chr3.4:88990608-88990627 | MS.gene054603:CDS | 25.0% |
| AGCCCATAAATTAACTTCTT+TGG | - | chr3.4:88990372-88990391 | None:intergenic | 30.0% | |
| ATGATTAGAGAAGAATTGAC+TGG | + | chr3.4:88991064-88991083 | MS.gene054603:CDS | 30.0% | |
| CCAAATGAAATATTGAACCT+TGG | - | chr3.4:88990800-88990819 | None:intergenic | 30.0% | |
| CCAAGGTTCAATATTTCATT+TGG | + | chr3.4:88990797-88990816 | MS.gene054603:CDS | 30.0% | |
| GGCCAAAGAAGTTAATTTAT+GGG | + | chr3.4:88990367-88990386 | MS.gene054603:CDS | 30.0% | |
| TAATCATAAACAAGAAAGGG+TGG | - | chr3.4:88991051-88991070 | None:intergenic | 30.0% | |
| TGGCCAAAGAAGTTAATTTA+TGG | + | chr3.4:88990366-88990385 | MS.gene054603:CDS | 30.0% | |
| TTCTTCCAAATGCAAAAGAT+GGG | + | chr3.4:88990681-88990700 | MS.gene054603:CDS | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr3.4:88990680-88990699 | MS.gene054603:CDS | 30.0% | |
| ! | GACACAATTTGTTTAAAGGA+AGG | - | chr3.4:88990142-88990161 | None:intergenic | 30.0% |
| ! | GTATTCGGTATCATGATTTT+TGG | - | chr3.4:88989740-88989759 | None:intergenic | 30.0% |
| ! | TTCTTTGGAGAAAAGATGTT+TGG | - | chr3.4:88989870-88989889 | None:intergenic | 30.0% |
| !! | TTCTGTTGATTTCAAGAACA+AGG | + | chr3.4:88990186-88990205 | MS.gene054603:CDS | 30.0% |
| AACAATCATCTTTGTTGGAC+AGG | + | chr3.4:88991087-88991106 | MS.gene054603:CDS | 35.0% | |
| ACTGGAACAATCATCTTTGT+TGG | + | chr3.4:88991082-88991101 | MS.gene054603:CDS | 35.0% | |
| ATAACACGATGTTCTTGTTC+CGG | - | chr3.4:88989898-88989917 | None:intergenic | 35.0% | |
| CAATGATGCTTAGTACAACT+TGG | - | chr3.4:88989934-88989953 | None:intergenic | 35.0% | |
| CACTATACTTCAAAGGAATG+TGG | + | chr3.4:88990474-88990493 | MS.gene054603:CDS | 35.0% | |
| GCTAATGCACTATACTTCAA+AGG | + | chr3.4:88990467-88990486 | MS.gene054603:CDS | 35.0% | |
| TAACCGAGTTTCCATTCAAA+AGG | - | chr3.4:88990544-88990563 | None:intergenic | 35.0% | |
| TGAAACTTCTGATATGCTGA+AGG | + | chr3.4:88990823-88990842 | MS.gene054603:CDS | 35.0% | |
| TTAAAGAACTTCTTCCTCCA+CGG | + | chr3.4:88990414-88990433 | MS.gene054603:CDS | 35.0% | |
| TTATCTTCGCCTTGCTTATA+AGG | - | chr3.4:88990638-88990657 | None:intergenic | 35.0% | |
| ! | TCACCTTTTGAATGGAAACT+CGG | + | chr3.4:88990538-88990557 | MS.gene054603:CDS | 35.0% |
| ! | TTTTCTCCAAAGAATCTCAC+CGG | + | chr3.4:88989876-88989895 | MS.gene054603:CDS | 35.0% |
| AAAGGAAGGCTGAAGAGAAA+TGG | - | chr3.4:88990128-88990147 | None:intergenic | 40.0% | |
| ATATCGCTCGGAGTTGTATT+CGG | - | chr3.4:88989755-88989774 | None:intergenic | 40.0% | |
| CAATGGAGGTCTGACTAAAA+TGG | + | chr3.4:88990871-88990890 | MS.gene054603:CDS | 40.0% | |
| GCCAACTTTGCTTGAGAAAT+TGG | + | chr3.4:88990706-88990725 | MS.gene054603:CDS | 40.0% | |
| GCCAATTTCTCAAGCAAAGT+TGG | - | chr3.4:88990710-88990729 | None:intergenic | 40.0% | |
| TCTTCCTTACGAGTCATGAA+GGG | - | chr3.4:88990572-88990591 | None:intergenic | 40.0% | |
| TTCTTCCTTACGAGTCATGA+AGG | - | chr3.4:88990573-88990592 | None:intergenic | 40.0% | |
| ! | GTTTTACCTTTCACCAATGG+AGG | + | chr3.4:88990857-88990876 | MS.gene054603:CDS | 40.0% |
| ! | TGCATTAGCAATGATTAGCC+TGG | - | chr3.4:88990456-88990475 | None:intergenic | 40.0% |
| !! | CATTTTAGTCAGACCTCCAT+TGG | - | chr3.4:88990873-88990892 | None:intergenic | 40.0% |
| !! | GTGGTTTTACCTTTCACCAA+TGG | + | chr3.4:88990854-88990873 | MS.gene054603:CDS | 40.0% |
| !! | TAGTCGAGTTGGAAAACTCA+TGG | - | chr3.4:88991014-88991033 | None:intergenic | 40.0% |
| AAAGATGTTTGGCGATGGTG+AGG | - | chr3.4:88989859-88989878 | None:intergenic | 45.0% | |
| AAGATGTTTGGCGATGGTGA+GGG | - | chr3.4:88989858-88989877 | None:intergenic | 45.0% | |
| AGAAGCTGCTGATGTTGAGT+GGG | - | chr3.4:88989788-88989807 | None:intergenic | 45.0% | |
| AGTACAACTTGGAGCGAAAG+TGG | - | chr3.4:88989923-88989942 | None:intergenic | 45.0% | |
| CAAGCTTCCACATGATAGAG+TGG | + | chr3.4:88990754-88990773 | MS.gene054603:CDS | 45.0% | |
| CCACATGATAGAGTGGAAGT+AGG | + | chr3.4:88990761-88990780 | MS.gene054603:CDS | 45.0% | |
| CCTACTTCCACTCTATCATG+TGG | - | chr3.4:88990764-88990783 | None:intergenic | 45.0% | |
| CTTCGCCTTGCTTATAAGGA+AGG | - | chr3.4:88990634-88990653 | None:intergenic | 45.0% | |
| CTTGTTCCGGTGAGATTCTT+TGG | - | chr3.4:88989885-88989904 | None:intergenic | 45.0% | |
| GATGTTGAGTGGGATCGATT+TGG | - | chr3.4:88989778-88989797 | None:intergenic | 45.0% | |
| GCTACAAAGTCTAGTCGAGT+TGG | - | chr3.4:88991025-88991044 | None:intergenic | 45.0% | |
| GCTAGTGATTACTTCAGCTG+CGG | - | chr3.4:88990987-88991006 | None:intergenic | 45.0% | |
| GGAGAAAAGATGTTTGGCGA+TGG | - | chr3.4:88989864-88989883 | None:intergenic | 45.0% | |
| GGTTTGAAAGGCAAGTGAAG+TGG | + | chr3.4:88990346-88990365 | MS.gene054603:intron | 45.0% | |
| GTACTAAGCATCATTGCTGC+TGG | + | chr3.4:88989938-88989957 | MS.gene054603:CDS | 45.0% | |
| GTCAAGAAGCTGTTGTTGTG+TGG | - | chr3.4:88989975-88989994 | None:intergenic | 45.0% | |
| GTCTCCGTCATTCTCAAAGA+CGG | + | chr3.4:88990046-88990065 | MS.gene054603:CDS | 45.0% | |
| TCTGATATGCTGAAGGAGCT+AGG | + | chr3.4:88990830-88990849 | MS.gene054603:CDS | 45.0% | |
| TGGGCTGCAAAAGAGACAAA+TGG | + | chr3.4:88990386-88990405 | MS.gene054603:CDS | 45.0% | |
| TGTTCCCTTCATGACTCGTA+AGG | + | chr3.4:88990565-88990584 | MS.gene054603:CDS | 45.0% | |
| ! | AGCACCGTCTTTGAGAATGA+CGG | - | chr3.4:88990053-88990072 | None:intergenic | 45.0% |
| ! | CTCTTTTGTCGATGGTGTGT+GGG | + | chr3.4:88990093-88990112 | MS.gene054603:CDS | 45.0% |
| ! | CTTGGCCTTCCTTATAAGCA+AGG | + | chr3.4:88990626-88990645 | MS.gene054603:CDS | 45.0% |
| ! | TCTCTTTTGTCGATGGTGTG+TGG | + | chr3.4:88990092-88990111 | MS.gene054603:CDS | 45.0% |
| !! | ATCATTGCTGCTGGTTCTGA+CGG | + | chr3.4:88989947-88989966 | MS.gene054603:CDS | 45.0% |
| !! | GGATCGATTTGGATATCGCT+CGG | - | chr3.4:88989767-88989786 | None:intergenic | 45.0% |
| AACGCTGCTATGGTGGTTGT+TGG | - | chr3.4:88989834-88989853 | None:intergenic | 50.0% | |
| AAGTAGCAGGCAAGGTCGAT+TGG | - | chr3.4:88989671-88989690 | None:intergenic | 50.0% | |
| AGAACTTCTTCCTCCACGGT+CGG | + | chr3.4:88990418-88990437 | MS.gene054603:CDS | 50.0% | |
| AGGTGCTCAATCCTCTTGCT+GGG | + | chr3.4:88991107-88991126 | MS.gene054603:CDS | 50.0% | |
| AGTGATTACTTCAGCTGCGG+TGG | - | chr3.4:88990984-88991003 | None:intergenic | 50.0% | |
| CCATCGACAAAAGAGAGACG+AGG | - | chr3.4:88990088-88990107 | None:intergenic | 50.0% | |
| GAGAAGCTGCTGATGTTGAG+TGG | - | chr3.4:88989789-88989808 | None:intergenic | 50.0% | |
| GAGTGGAAGTAGGCGACTTT+AGG | + | chr3.4:88990771-88990790 | MS.gene054603:CDS | 50.0% | |
| GGTCGGTTAACAGCTTAACC+AGG | + | chr3.4:88990435-88990454 | MS.gene054603:CDS | 50.0% | |
| GTCAGACCTCCATTGGTGAA+AGG | - | chr3.4:88990866-88990885 | None:intergenic | 50.0% | |
| GTTAAGCTGTTAACCGACCG+TGG | - | chr3.4:88990434-88990453 | None:intergenic | 50.0% | |
| GTTGATCGGTGGAGTTGGAT+TGG | - | chr3.4:88990003-88990022 | None:intergenic | 50.0% | |
| ! | AACGAAGAGCGTGAAGTAGC+AGG | - | chr3.4:88989684-88989703 | None:intergenic | 50.0% |
| ! | AATGACGGAGACGAGCTTAG+AGG | - | chr3.4:88990038-88990057 | None:intergenic | 50.0% |
| ! | CCTCGTCTCTCTTTTGTCGA+TGG | + | chr3.4:88990085-88990104 | MS.gene054603:CDS | 50.0% |
| ! | GGCAGCCCATCTTTTGCATT+TGG | - | chr3.4:88990689-88990708 | None:intergenic | 50.0% |
| ! | TTTTGTCGATGGTGTGTGGG+TGG | + | chr3.4:88990096-88990115 | MS.gene054603:CDS | 50.0% |
| !! | ATGGTGGTTGTTGGCGGATT+CGG | - | chr3.4:88989825-88989844 | None:intergenic | 50.0% |
| !! | GAAGGAGTTGAGTTGATCGG+TGG | - | chr3.4:88990014-88990033 | None:intergenic | 50.0% |
| !! | GGCGAAGGAGTTGAGTTGAT+CGG | - | chr3.4:88990017-88990036 | None:intergenic | 50.0% |
| !! | GTTGAGTTGATCGGTGGAGT+TGG | - | chr3.4:88990008-88990027 | None:intergenic | 50.0% |
| !! | TAGGCGACTTTAGGATCCCA+AGG | + | chr3.4:88990780-88990799 | MS.gene054603:CDS | 50.0% |
| AAGCTGTTAACCGACCGTGG+AGG | - | chr3.4:88990431-88990450 | None:intergenic | 55.0% | |
| AGAGCGTGAAGTAGCAGGCA+AGG | - | chr3.4:88989679-88989698 | None:intergenic | 55.0% | |
| CAGGTGCTCAATCCTCTTGC+TGG | + | chr3.4:88991106-88991125 | MS.gene054603:CDS | 55.0% | |
| GCTGCTATGGTGGTTGTTGG+CGG | - | chr3.4:88989831-88989850 | None:intergenic | 55.0% | |
| TATGCTGAAGGAGCTAGGCG+TGG | + | chr3.4:88990835-88990854 | MS.gene054603:CDS | 55.0% | |
| TGAGGGAAACGCTGCTATGG+TGG | - | chr3.4:88989841-88989860 | None:intergenic | 55.0% | |
| TGGTGAGGGAAACGCTGCTA+TGG | - | chr3.4:88989844-88989863 | None:intergenic | 55.0% | |
| ! | GATCGGTGGAGTTGGATTGG+AGG | - | chr3.4:88990000-88990019 | None:intergenic | 55.0% |
| !! | TGTTGGCGGATTCGGATCGA+AGG | - | chr3.4:88989817-88989836 | None:intergenic | 55.0% |
| AGAGAGACGAGGTCCTCCAG+CGG | - | chr3.4:88990077-88990096 | None:intergenic | 60.0% | |
| GGAGACGAGCTTAGAGGCGA+AGG | - | chr3.4:88990032-88990051 | None:intergenic | 60.0% | |
| TGCGGTGGCTGCAACAGCTT+CGG | - | chr3.4:88990969-88990988 | None:intergenic | 60.0% | |
| AAAGACGGTGCTCCCGCTGG+AGG | + | chr3.4:88990061-88990080 | MS.gene054603:CDS | 65.0% | |
| CTCAAAGACGGTGCTCCCGC+TGG | + | chr3.4:88990058-88990077 | MS.gene054603:CDS | 65.0% | |
| GAGAGACGAGGTCCTCCAGC+GGG | - | chr3.4:88990076-88990095 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 88989650 | 88991132 | 88989650 | ID=MS.gene054603 |
| chr3.4 | mRNA | 88989650 | 88991132 | 88989650 | ID=MS.gene054603.t1;Parent=MS.gene054603 |
| chr3.4 | exon | 88989650 | 88990207 | 88989650 | ID=MS.gene054603.t1.exon1;Parent=MS.gene054603.t1 |
| chr3.4 | CDS | 88989650 | 88990207 | 88989650 | ID=cds.MS.gene054603.t1;Parent=MS.gene054603.t1 |
| chr3.4 | exon | 88990356 | 88991132 | 88990356 | ID=MS.gene054603.t1.exon2;Parent=MS.gene054603.t1 |
| chr3.4 | CDS | 88990356 | 88991132 | 88990356 | ID=cds.MS.gene054603.t1;Parent=MS.gene054603.t1 |
| Gene Sequence |
| Protein sequence |
