Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054606.t1 | XP_004491713.1 | 71.7 | 364 | 97 | 3 | 19 | 381 | 27 | 385 | 9.70E-141 | 510 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054606.t1 | Q9S7T8 | 54.6 | 368 | 158 | 6 | 19 | 382 | 28 | 390 | 3.3e-105 | 383.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054606.t1 | A0A1S2XP21 | 71.7 | 364 | 97 | 3 | 19 | 381 | 27 | 385 | 7.0e-141 | 510.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene054606 | PPI |
| MS.gene045585 | MS.gene054606 | PPI |
| MS.gene031697 | MS.gene054606 | PPI |
| MS.gene065945 | MS.gene054606 | PPI |
| MS.gene065944 | MS.gene054606 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054606.t1 | MTR_4g045707 | 71.159 | 371 | 102 | 3 | 14 | 384 | 23 | 388 | 0.0 | 525 |
| MS.gene054606.t1 | MTR_3g101010 | 70.430 | 372 | 105 | 3 | 14 | 384 | 22 | 389 | 2.86e-178 | 501 |
| MS.gene054606.t1 | MTR_3g018740 | 66.400 | 375 | 110 | 4 | 14 | 382 | 22 | 386 | 2.42e-174 | 491 |
| MS.gene054606.t1 | MTR_3g048000 | 66.938 | 369 | 100 | 4 | 14 | 382 | 44 | 390 | 1.05e-173 | 489 |
| MS.gene054606.t1 | MTR_8g027395 | 65.860 | 372 | 118 | 3 | 14 | 384 | 34 | 397 | 1.16e-170 | 482 |
| MS.gene054606.t1 | MTR_4g088525 | 63.415 | 369 | 126 | 3 | 16 | 383 | 8 | 368 | 8.09e-163 | 461 |
| MS.gene054606.t1 | MTR_3g101030 | 62.468 | 389 | 121 | 6 | 13 | 384 | 49 | 429 | 7.92e-161 | 458 |
| MS.gene054606.t1 | MTR_7g451890 | 62.842 | 366 | 131 | 3 | 21 | 384 | 40 | 402 | 1.34e-158 | 452 |
| MS.gene054606.t1 | MTR_2g045980 | 62.873 | 369 | 129 | 3 | 16 | 382 | 24 | 386 | 9.82e-157 | 446 |
| MS.gene054606.t1 | MTR_2g046030 | 61.789 | 369 | 133 | 3 | 16 | 382 | 24 | 386 | 2.71e-156 | 445 |
| MS.gene054606.t1 | MTR_7g047780 | 62.842 | 366 | 131 | 3 | 21 | 384 | 40 | 402 | 8.39e-156 | 444 |
| MS.gene054606.t1 | MTR_7g050810 | 63.562 | 365 | 130 | 2 | 21 | 384 | 42 | 404 | 1.73e-155 | 444 |
| MS.gene054606.t1 | MTR_8g027420 | 61.828 | 372 | 122 | 4 | 14 | 384 | 23 | 375 | 5.32e-155 | 441 |
| MS.gene054606.t1 | MTR_8g461160 | 61.918 | 365 | 134 | 3 | 20 | 382 | 31 | 392 | 9.66e-154 | 439 |
| MS.gene054606.t1 | MTR_3g101180 | 62.534 | 371 | 126 | 5 | 21 | 382 | 32 | 398 | 1.01e-153 | 439 |
| MS.gene054606.t1 | MTR_7g050750 | 61.202 | 366 | 137 | 3 | 21 | 384 | 34 | 396 | 1.20e-151 | 434 |
| MS.gene054606.t1 | MTR_3g101130 | 57.702 | 383 | 151 | 4 | 5 | 386 | 19 | 391 | 4.45e-149 | 427 |
| MS.gene054606.t1 | MTR_4g088535 | 60.109 | 366 | 123 | 2 | 14 | 379 | 24 | 366 | 7.32e-147 | 421 |
| MS.gene054606.t1 | MTR_3g101050 | 59.467 | 375 | 124 | 8 | 14 | 383 | 46 | 397 | 2.46e-137 | 397 |
| MS.gene054606.t1 | MTR_3g102920 | 60.383 | 366 | 100 | 8 | 21 | 382 | 84 | 408 | 9.51e-137 | 396 |
| MS.gene054606.t1 | MTR_3g015620 | 55.080 | 374 | 135 | 6 | 14 | 382 | 33 | 378 | 1.75e-125 | 367 |
| MS.gene054606.t1 | MTR_3g101200 | 54.545 | 363 | 137 | 5 | 21 | 382 | 55 | 390 | 1.12e-122 | 360 |
| MS.gene054606.t1 | MTR_3g101190 | 52.973 | 370 | 108 | 5 | 15 | 384 | 9 | 312 | 3.57e-122 | 356 |
| MS.gene054606.t1 | MTR_3g100995 | 63.985 | 261 | 86 | 4 | 125 | 384 | 11 | 264 | 6.22e-113 | 330 |
| MS.gene054606.t1 | MTR_3g018747 | 65.660 | 265 | 68 | 5 | 121 | 382 | 9 | 253 | 2.19e-112 | 329 |
| MS.gene054606.t1 | MTR_3g100010 | 56.369 | 314 | 87 | 3 | 22 | 302 | 42 | 338 | 4.47e-110 | 326 |
| MS.gene054606.t1 | MTR_7g050830 | 56.701 | 291 | 91 | 4 | 21 | 290 | 42 | 318 | 3.02e-102 | 305 |
| MS.gene054606.t1 | MTR_3g015760 | 54.386 | 285 | 117 | 6 | 102 | 382 | 4 | 279 | 5.69e-92 | 278 |
| MS.gene054606.t1 | MTR_3g111160 | 67.299 | 211 | 63 | 3 | 175 | 384 | 15 | 220 | 1.48e-89 | 269 |
| MS.gene054606.t1 | MTR_3g100520 | 60.444 | 225 | 71 | 4 | 162 | 384 | 1 | 209 | 7.89e-86 | 259 |
| MS.gene054606.t1 | MTR_2g046410 | 58.824 | 238 | 82 | 3 | 147 | 382 | 124 | 347 | 3.65e-85 | 263 |
| MS.gene054606.t1 | MTR_3g114310 | 40.789 | 380 | 200 | 11 | 21 | 384 | 40 | 410 | 3.29e-81 | 255 |
| MS.gene054606.t1 | MTR_3g101110 | 56.017 | 241 | 75 | 4 | 121 | 358 | 68 | 280 | 1.88e-80 | 248 |
| MS.gene054606.t1 | MTR_3g099970 | 63.131 | 198 | 54 | 2 | 121 | 318 | 20 | 198 | 2.15e-79 | 243 |
| MS.gene054606.t1 | MTR_3g102870 | 59.006 | 161 | 62 | 2 | 184 | 343 | 1 | 158 | 1.12e-59 | 191 |
| MS.gene054606.t1 | MTR_3g101150 | 62.500 | 160 | 55 | 3 | 227 | 383 | 1 | 158 | 1.18e-58 | 188 |
| MS.gene054606.t1 | MTR_3g101020 | 54.450 | 191 | 55 | 4 | 195 | 384 | 1 | 160 | 9.41e-58 | 186 |
| MS.gene054606.t1 | MTR_3g111150 | 53.374 | 163 | 50 | 3 | 14 | 175 | 16 | 153 | 9.40e-48 | 160 |
| MS.gene054606.t1 | MTR_3g100990 | 63.393 | 112 | 41 | 0 | 14 | 125 | 22 | 133 | 1.39e-38 | 145 |
| MS.gene054606.t1 | MTR_4g093550 | 68.657 | 67 | 21 | 0 | 14 | 80 | 23 | 89 | 4.33e-22 | 90.1 |
| MS.gene054606.t1 | MTR_6g046890 | 49.515 | 103 | 38 | 3 | 12 | 100 | 14 | 116 | 2.31e-18 | 81.3 |
| MS.gene054606.t1 | MTR_3g101140 | 48.315 | 89 | 43 | 1 | 299 | 384 | 28 | 116 | 1.39e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054606.t1 | AT1G47710 | 54.620 | 368 | 158 | 6 | 19 | 382 | 28 | 390 | 2.64e-135 | 392 |
| MS.gene054606.t1 | AT1G47710 | 54.620 | 368 | 158 | 6 | 19 | 382 | 55 | 417 | 1.32e-134 | 391 |
| MS.gene054606.t1 | AT3G45220 | 48.656 | 372 | 171 | 6 | 20 | 381 | 29 | 390 | 1.64e-117 | 347 |
| MS.gene054606.t1 | AT2G25240 | 51.613 | 372 | 152 | 9 | 20 | 381 | 29 | 382 | 1.70e-116 | 344 |
| MS.gene054606.t1 | AT2G26390 | 47.826 | 391 | 175 | 10 | 3 | 381 | 13 | 386 | 2.10e-115 | 342 |
| MS.gene054606.t1 | AT1G62170 | 42.588 | 371 | 181 | 5 | 19 | 383 | 89 | 433 | 1.11e-96 | 295 |
| MS.gene054606.t1 | AT1G64030 | 43.432 | 373 | 182 | 6 | 19 | 386 | 28 | 376 | 3.21e-95 | 290 |
| MS.gene054606.t1 | AT2G14540 | 44.262 | 366 | 177 | 5 | 19 | 381 | 56 | 397 | 6.65e-92 | 282 |
| MS.gene054606.t1 | AT2G35580 | 42.857 | 364 | 176 | 8 | 25 | 381 | 33 | 371 | 2.10e-90 | 277 |
| MS.gene054606.t1 | AT1G62170 | 39.109 | 404 | 181 | 6 | 19 | 383 | 89 | 466 | 1.34e-89 | 278 |
| MS.gene054606.t1 | AT1G64010 | 46.875 | 224 | 86 | 7 | 162 | 381 | 1 | 195 | 2.13e-56 | 184 |
| MS.gene054606.t1 | AT1G64010 | 46.411 | 209 | 79 | 7 | 177 | 381 | 2 | 181 | 5.87e-49 | 164 |
| MS.gene054606.t1 | AT1G63280 | 54.783 | 115 | 48 | 2 | 121 | 233 | 8 | 120 | 2.21e-33 | 121 |
| MS.gene054606.t1 | AT1G62160 | 37.379 | 206 | 96 | 6 | 184 | 383 | 42 | 220 | 7.04e-29 | 112 |
| MS.gene054606.t1 | AT1G51330 | 52.252 | 111 | 50 | 2 | 120 | 227 | 30 | 140 | 3.14e-26 | 104 |
| MS.gene054606.t1 | AT1G64020 | 41.489 | 94 | 53 | 2 | 19 | 111 | 28 | 120 | 2.68e-16 | 75.1 |
Find 84 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATGCATTGTACTTTAA+AGG | 0.150397 | 3.4:-89029989 | MS.gene054606:CDS |
| TCATCTTGGCCTTGTTTATA+AGG | 0.277288 | 3.4:+89029821 | None:intergenic |
| AATACAAAGTTACCTTGTTC+TGG | 0.295983 | 3.4:+89030339 | None:intergenic |
| CAAGTGCTCAATCCTCTTGC+TGG | 0.314723 | 3.4:-89029335 | MS.gene054606:CDS |
| TGCATTTGTAAATATGAGTT+TGG | 0.319421 | 3.4:+89030003 | None:intergenic |
| GAGGAAGAATATCTTTAATA+AGG | 0.324401 | 3.4:+89030047 | None:intergenic |
| ACCGAAACAATCCTCTTTGT+TGG | 0.327061 | 3.4:-89029359 | MS.gene054606:CDS |
| AATCACGTCTACTTATTATA+AGG | 0.335415 | 3.4:-89030384 | MS.gene054606:CDS |
| TCCTGGAGGTTTGACAAATA+TGG | 0.342400 | 3.4:-89029579 | MS.gene054606:CDS |
| TGACCGATGAAGTCAATCTA+TGG | 0.343155 | 3.4:-89030090 | MS.gene054606:CDS |
| AGCAAGAATAATCAATATAT+TGG | 0.350834 | 3.4:-89029875 | MS.gene054606:CDS |
| TACTGTGACTGCAGTTGTTA+AGG | 0.363491 | 3.4:-89029453 | MS.gene054606:CDS |
| GAAAGACTTGTGAAATATCT+TGG | 0.368731 | 3.4:+89029523 | None:intergenic |
| TCTGACATGTTGAAGGAGTT+AGG | 0.396055 | 3.4:-89029620 | MS.gene054606:CDS |
| TCCAACAAAGAGGATTGTTT+CGG | 0.398861 | 3.4:+89029358 | None:intergenic |
| AGTAGACGTGATTTGTTTGA+AGG | 0.402929 | 3.4:+89030394 | None:intergenic |
| TTGCTCATCCTCATCGCTGC+TGG | 0.404632 | 3.4:-89030599 | MS.gene054606:CDS |
| CTCAAAGACGCCGCTCCTGC+TGG | 0.406842 | 3.4:-89030479 | MS.gene054606:CDS |
| CATTGTACTTTAAAGGAGAA+TGG | 0.408158 | 3.4:-89029982 | MS.gene054606:CDS |
| TGGATTCAGAGCCGAGGAAG+TGG | 0.411892 | 3.4:+89030546 | None:intergenic |
| TGAAGGAAGGTTGAAGAGGA+AGG | 0.414685 | 3.4:+89030411 | None:intergenic |
| TCAAATGAAACATTGAATCT+TGG | 0.429803 | 3.4:+89029653 | None:intergenic |
| CAGCAGGAGCGGCGTCTTTG+AGG | 0.430315 | 3.4:+89030480 | None:intergenic |
| GAATAAAGTACATAGAGAAT+TGG | 0.431088 | 3.4:+89029795 | None:intergenic |
| ATTATTCTTGCTAGTCATGA+AGG | 0.435204 | 3.4:+89029886 | None:intergenic |
| TCTCTAATCATAAATAAGAA+AGG | 0.443816 | 3.4:+89029389 | None:intergenic |
| ATTCTTCCAGATGCAAAAGA+TGG | 0.447677 | 3.4:-89029776 | MS.gene054606:CDS |
| TGAAACTTCTGACATGTTGA+AGG | 0.449557 | 3.4:-89029627 | MS.gene054606:CDS |
| TATTAAAGATATTCTTCCTC+CGG | 0.459436 | 3.4:-89030044 | MS.gene054606:CDS |
| TAGAGAATTGGCGGTCATCT+TGG | 0.462315 | 3.4:+89029807 | None:intergenic |
| CGATGAGGATGAGCAAAACT+TGG | 0.465245 | 3.4:+89030606 | None:intergenic |
| ATTGTACTTTAAAGGAGAAT+GGG | 0.471043 | 3.4:-89029981 | MS.gene054606:CDS |
| GAAGGAAGGTTGAAGAGGAA+GGG | 0.474706 | 3.4:+89030412 | None:intergenic |
| ACTGTGACTGCAGTTGTTAA+GGG | 0.478802 | 3.4:-89029452 | MS.gene054606:CDS |
| GTCAGCTTTGGTTGAAAAGG+TGG | 0.483614 | 3.4:-89029750 | MS.gene054606:CDS |
| CTCTGTTGCCAACGGTGTGT+GGG | 0.484538 | 3.4:-89030444 | MS.gene054606:CDS |
| GTCAAACCTCCAGGAGAGAA+AGG | 0.488467 | 3.4:+89029587 | None:intergenic |
| GACGTGATTTGTTTGAAGGA+AGG | 0.488876 | 3.4:+89030398 | None:intergenic |
| TCTCTGTTGCCAACGGTGTG+TGG | 0.491507 | 3.4:-89030445 | MS.gene054606:CDS |
| AAAAGATGGACTGTCAGCTT+TGG | 0.498213 | 3.4:-89029762 | MS.gene054606:CDS |
| CTCTAATCATAAATAAGAAA+GGG | 0.502614 | 3.4:+89029390 | None:intergenic |
| AATATGGTGGACTCTCTTGA+AGG | 0.508651 | 3.4:-89029563 | MS.gene054606:CDS |
| GAGTTACTACATGACATAGA+TGG | 0.510721 | 3.4:-89029716 | MS.gene054606:CDS |
| GTTAAGATGTCGACCGACTC+CGG | 0.511152 | 3.4:+89030025 | None:intergenic |
| GCGAGGACCACCAGCAGGAG+CGG | 0.517384 | 3.4:+89030469 | None:intergenic |
| ACCATATTTGTCAAACCTCC+AGG | 0.526793 | 3.4:+89029578 | None:intergenic |
| GTCTTTCATTGAAATAAATG+AGG | 0.530253 | 3.4:-89029507 | MS.gene054606:CDS |
| TTCTGTTGATTTCCAGAACA+AGG | 0.530698 | 3.4:-89030351 | MS.gene054606:intron |
| CATGTTGAAGGAGTTAGGAA+TGG | 0.535627 | 3.4:-89029615 | MS.gene054606:CDS |
| CCTCGCCTCTCTGTTGCCAA+CGG | 0.536927 | 3.4:-89030452 | MS.gene054606:CDS |
| TTCATTGAAATAAATGAGGA+AGG | 0.538771 | 3.4:-89029503 | MS.gene054606:CDS |
| AGATATTCTTCCTCCGGAGT+CGG | 0.540368 | 3.4:-89030038 | MS.gene054606:CDS |
| TGGGCTGAAAACGAGACAAA+AGG | 0.546549 | 3.4:-89030070 | MS.gene054606:CDS |
| AGCGGCGTCTTTGAGGATGA+TGG | 0.549612 | 3.4:+89030487 | None:intergenic |
| ACTGTCAGCTTTGGTTGAAA+AGG | 0.551225 | 3.4:-89029753 | MS.gene054606:CDS |
| AAAGACGCCGCTCCTGCTGG+TGG | 0.555811 | 3.4:-89030476 | MS.gene054606:CDS |
| AAGTGCTCAATCCTCTTGCT+GGG | 0.557046 | 3.4:-89029334 | MS.gene054606:CDS |
| GAGAGGCGAGGACCACCAGC+AGG | 0.557246 | 3.4:+89030464 | None:intergenic |
| TAAAGTACATAGAGAATTGG+CGG | 0.564668 | 3.4:+89029798 | None:intergenic |
| GACCGATGAAGTCAATCTAT+GGG | 0.565499 | 3.4:-89030089 | MS.gene054606:CDS |
| AGCCCATAGATTGACTTCAT+CGG | 0.567300 | 3.4:+89030087 | None:intergenic |
| TCTCAATGGCAGCTCTGTCA+AGG | 0.570509 | 3.4:-89029912 | MS.gene054606:CDS |
| GGTTGGTACTTGATTCGCGA+TGG | 0.571972 | 3.4:+89030729 | None:intergenic |
| CAACAGCTTCTCCACTTCCT+CGG | 0.573971 | 3.4:-89030557 | MS.gene054606:CDS |
| TTATTCTTGCTAGTCATGAA+GGG | 0.574246 | 3.4:+89029887 | None:intergenic |
| TGTTTGAAGGAAGGTTGAAG+AGG | 0.579764 | 3.4:+89030407 | None:intergenic |
| TGAGCACTTGTCCAACAAAG+AGG | 0.593340 | 3.4:+89029348 | None:intergenic |
| TGACAGAGCTGCCATTGAGA+AGG | 0.601435 | 3.4:+89029915 | None:intergenic |
| TTGTTCAACCCACACACCGT+TGG | 0.603479 | 3.4:+89030436 | None:intergenic |
| CTACGTCTTCCTTATAAACA+AGG | 0.606712 | 3.4:-89029830 | MS.gene054606:CDS |
| AATTAAGATAGCCCAGCAAG+AGG | 0.606767 | 3.4:+89029323 | None:intergenic |
| AAAAGAGTTGAGATGATCAG+TGG | 0.610674 | 3.4:+89030526 | None:intergenic |
| TGGAGGTTTGACAAATATGG+TGG | 0.625160 | 3.4:-89029576 | MS.gene054606:CDS |
| GTGGAGAAGCTGTTGTTGTG+TGG | 0.631210 | 3.4:+89030565 | None:intergenic |
| TCTGAGAGCCAGCAGCGATG+AGG | 0.635795 | 3.4:+89030591 | None:intergenic |
| TAATCATAAATAAGAAAGGG+TGG | 0.640706 | 3.4:+89029393 | None:intergenic |
| AGCAAAACTTGGATAGACAA+TGG | 0.640956 | 3.4:+89030617 | None:intergenic |
| GCTACAAAGTCTAGTCGAGG+TGG | 0.654218 | 3.4:+89029419 | None:intergenic |
| GATCAGTGGATTCAGAGCCG+AGG | 0.660612 | 3.4:+89030540 | None:intergenic |
| TTAGCTACAAAGTCTAGTCG+AGG | 0.688528 | 3.4:+89029416 | None:intergenic |
| AAGATGTCGACCGACTCCGG+AGG | 0.695525 | 3.4:+89030028 | None:intergenic |
| GAAATCAACAGAACACAAAG+CGG | 0.708702 | 3.4:+89030361 | None:intergenic |
| ACACACCGTTGGCAACAGAG+AGG | 0.716704 | 3.4:+89030447 | None:intergenic |
| CCGTTGGCAACAGAGAGGCG+AGG | 0.717250 | 3.4:+89030452 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTGATATTGTTTTAT+AGG | - | chr3.4:89029973-89029992 | MS.gene054606:CDS | 10.0% |
| !! | AATATAAAAGCAAATAAACA+AGG | + | chr3.4:89029807-89029826 | None:intergenic | 15.0% |
| !! | AGCAAGAATAATCAATATAT+TGG | - | chr3.4:89030220-89030239 | MS.gene054606:intron | 20.0% |
| !! | CTCTAATCATAAATAAGAAA+GGG | + | chr3.4:89030708-89030727 | None:intergenic | 20.0% |
| !! | TCTCTAATCATAAATAAGAA+AGG | + | chr3.4:89030709-89030728 | None:intergenic | 20.0% |
| !!! | GAATACTTTGTTTTAATTCT+CGG | + | chr3.4:89029401-89029420 | None:intergenic | 20.0% |
| ! | AATCACGTCTACTTATTATA+AGG | - | chr3.4:89029711-89029730 | MS.gene054606:CDS | 25.0% |
| ! | ACAAATGCATTGTACTTTAA+AGG | - | chr3.4:89030106-89030125 | MS.gene054606:intron | 25.0% |
| ! | GAATAAAGTACATAGAGAAT+TGG | + | chr3.4:89030303-89030322 | None:intergenic | 25.0% |
| ! | GAGGAAGAATATCTTTAATA+AGG | + | chr3.4:89030051-89030070 | None:intergenic | 25.0% |
| ! | GTCTTTCATTGAAATAAATG+AGG | - | chr3.4:89030588-89030607 | MS.gene054606:CDS | 25.0% |
| ! | TAATCATAAATAAGAAAGGG+TGG | + | chr3.4:89030705-89030724 | None:intergenic | 25.0% |
| ! | TATTAAAGATATTCTTCCTC+CGG | - | chr3.4:89030051-89030070 | MS.gene054606:CDS | 25.0% |
| ! | TCAAATGAAACATTGAATCT+TGG | + | chr3.4:89030445-89030464 | None:intergenic | 25.0% |
| ! | TGCATTTGTAAATATGAGTT+TGG | + | chr3.4:89030095-89030114 | None:intergenic | 25.0% |
| ! | TTCATTGAAATAAATGAGGA+AGG | - | chr3.4:89030592-89030611 | MS.gene054606:CDS | 25.0% |
| !! | ACGGTAAATCTATTGATTAA+TGG | + | chr3.4:89029830-89029849 | None:intergenic | 25.0% |
| !! | ATTGTACTTTAAAGGAGAAT+GGG | - | chr3.4:89030114-89030133 | MS.gene054606:intron | 25.0% |
| !! | GCAATAGAAGATTTTACTTT+TGG | + | chr3.4:89029906-89029925 | None:intergenic | 25.0% |
| !! | TATAATTTTCACCTTCTCAA+TGG | - | chr3.4:89030169-89030188 | MS.gene054606:intron | 25.0% |
| !!! | ATAAGTTGAGTTCTTTTCAA+AGG | + | chr3.4:89029933-89029952 | None:intergenic | 25.0% |
| !!! | CAATATATTGGTGTTTTTGA+TGG | - | chr3.4:89030232-89030251 | MS.gene054606:intron | 25.0% |
| !!! | TTGTTTTGAGAAAAGATGTT+TGG | + | chr3.4:89029434-89029453 | None:intergenic | 25.0% |
| AAAAGCAAATAAACAAGGCA+TGG | + | chr3.4:89029802-89029821 | None:intergenic | 30.0% | |
| AATACAAAGTTACCTTGTTC+TGG | + | chr3.4:89029759-89029778 | None:intergenic | 30.0% | |
| ATTATTCTTGCTAGTCATGA+AGG | + | chr3.4:89030212-89030231 | None:intergenic | 30.0% | |
| GAAAAGAAAAAGAAGAAGAG+TGG | - | chr3.4:89029339-89029358 | MS.gene054606:CDS | 30.0% | |
| GAAAGACTTGTGAAATATCT+TGG | + | chr3.4:89030575-89030594 | None:intergenic | 30.0% | |
| TAAAGTACATAGAGAATTGG+CGG | + | chr3.4:89030300-89030319 | None:intergenic | 30.0% | |
| TTATTCTTGCTAGTCATGAA+GGG | + | chr3.4:89030211-89030230 | None:intergenic | 30.0% | |
| ! | CATTGTACTTTAAAGGAGAA+TGG | - | chr3.4:89030113-89030132 | MS.gene054606:intron | 30.0% |
| !!! | TTTGTTTTAATTCTCGGCTA+TGG | + | chr3.4:89029395-89029414 | None:intergenic | 30.0% |
| AAAAGAGTTGAGATGATCAG+TGG | + | chr3.4:89029572-89029591 | None:intergenic | 35.0% | |
| AGCAAAACTTGGATAGACAA+TGG | + | chr3.4:89029481-89029500 | None:intergenic | 35.0% | |
| ATTCTTCCAGATGCAAAAGA+TGG | - | chr3.4:89030319-89030338 | MS.gene054606:intron | 35.0% | |
| CTACGTCTTCCTTATAAACA+AGG | - | chr3.4:89030265-89030284 | MS.gene054606:intron | 35.0% | |
| CTCCAAATTTGGTTAACTGA+CGG | + | chr3.4:89029849-89029868 | None:intergenic | 35.0% | |
| GAAATCAACAGAACACAAAG+CGG | + | chr3.4:89029737-89029756 | None:intergenic | 35.0% | |
| GAGTTACTACATGACATAGA+TGG | - | chr3.4:89030379-89030398 | MS.gene054606:CDS | 35.0% | |
| TACCGTCAGTTAACCAAATT+TGG | - | chr3.4:89029844-89029863 | MS.gene054606:CDS | 35.0% | |
| TCCAACAAAGAGGATTGTTT+CGG | + | chr3.4:89030740-89030759 | None:intergenic | 35.0% | |
| TGAAACTTCTGACATGTTGA+AGG | - | chr3.4:89030468-89030487 | MS.gene054606:CDS | 35.0% | |
| TTTAATTCTCGGCTATGGAA+AGG | + | chr3.4:89029390-89029409 | None:intergenic | 35.0% | |
| !! | AGTAGACGTGATTTGTTTGA+AGG | + | chr3.4:89029704-89029723 | None:intergenic | 35.0% |
| !! | TCATCTTGGCCTTGTTTATA+AGG | + | chr3.4:89030277-89030296 | None:intergenic | 35.0% |
| !! | TTCTGTTGATTTCCAGAACA+AGG | - | chr3.4:89029744-89029763 | MS.gene054606:CDS | 35.0% |
| AAAGATGTTTGGCGATGTTG+AGG | + | chr3.4:89029423-89029442 | None:intergenic | 40.0% | |
| ACCATATTTGTCAAACCTCC+AGG | + | chr3.4:89030520-89030539 | None:intergenic | 40.0% | |
| ACCGAAACAATCCTCTTTGT+TGG | - | chr3.4:89030736-89030755 | MS.gene054606:intron | 40.0% | |
| ACTGTGACTGCAGTTGTTAA+GGG | - | chr3.4:89030643-89030662 | MS.gene054606:intron | 40.0% | |
| CATGTTGAAGGAGTTAGGAA+TGG | - | chr3.4:89030480-89030499 | MS.gene054606:CDS | 40.0% | |
| CGTCAGTTAACCAAATTTGG+AGG | - | chr3.4:89029847-89029866 | MS.gene054606:CDS | 40.0% | |
| GAAAACGTGTCCTCCAAATT+TGG | + | chr3.4:89029860-89029879 | None:intergenic | 40.0% | |
| GACCGATGAAGTCAATCTAT+GGG | - | chr3.4:89030006-89030025 | MS.gene054606:CDS | 40.0% | |
| TACTGTGACTGCAGTTGTTA+AGG | - | chr3.4:89030642-89030661 | MS.gene054606:intron | 40.0% | |
| TCCTGGAGGTTTGACAAATA+TGG | - | chr3.4:89030516-89030535 | MS.gene054606:CDS | 40.0% | |
| TCTGACATGTTGAAGGAGTT+AGG | - | chr3.4:89030475-89030494 | MS.gene054606:CDS | 40.0% | |
| TGACCGATGAAGTCAATCTA+TGG | - | chr3.4:89030005-89030024 | MS.gene054606:CDS | 40.0% | |
| TGGAGGTTTGACAAATATGG+TGG | - | chr3.4:89030519-89030538 | MS.gene054606:CDS | 40.0% | |
| TGTTTGAAGGAAGGTTGAAG+AGG | + | chr3.4:89029691-89029710 | None:intergenic | 40.0% | |
| TTAGCTACAAAGTCTAGTCG+AGG | + | chr3.4:89030682-89030701 | None:intergenic | 40.0% | |
| ! | ACTGTCAGCTTTGGTTGAAA+AGG | - | chr3.4:89030342-89030361 | MS.gene054606:intron | 40.0% |
| ! | AGCCCATAGATTGACTTCAT+CGG | + | chr3.4:89030011-89030030 | None:intergenic | 40.0% |
| ! | GGCATGGATTGTAGTGAAAA+AGG | + | chr3.4:89029786-89029805 | None:intergenic | 40.0% |
| !! | AAAAGATGGACTGTCAGCTT+TGG | - | chr3.4:89030333-89030352 | MS.gene054606:intron | 40.0% |
| !! | AATATGGTGGACTCTCTTGA+AGG | - | chr3.4:89030532-89030551 | MS.gene054606:CDS | 40.0% |
| !! | ATGGTTTTACCTTTCTCTCC+TGG | - | chr3.4:89030499-89030518 | MS.gene054606:CDS | 40.0% |
| !! | GACGTGATTTGTTTGAAGGA+AGG | + | chr3.4:89029700-89029719 | None:intergenic | 40.0% |
| AAGTGCTCAATCCTCTTGCT+GGG | - | chr3.4:89030761-89030780 | MS.gene054606:CDS | 45.0% | |
| AGATATTCTTCCTCCGGAGT+CGG | - | chr3.4:89030057-89030076 | MS.gene054606:CDS | 45.0% | |
| ATTCTCGGCTATGGAAAGGT+TGG | + | chr3.4:89029386-89029405 | None:intergenic | 45.0% | |
| CGATGAGGATGAGCAAAACT+TGG | + | chr3.4:89029492-89029511 | None:intergenic | 45.0% | |
| GAAGGAAGGTTGAAGAGGAA+GGG | + | chr3.4:89029686-89029705 | None:intergenic | 45.0% | |
| TAGAGAATTGGCGGTCATCT+TGG | + | chr3.4:89030291-89030310 | None:intergenic | 45.0% | |
| TGAAGGAAGGTTGAAGAGGA+AGG | + | chr3.4:89029687-89029706 | None:intergenic | 45.0% | |
| TGAGCACTTGTCCAACAAAG+AGG | + | chr3.4:89030750-89030769 | None:intergenic | 45.0% | |
| TGGGCTGAAAACGAGACAAA+AGG | - | chr3.4:89030025-89030044 | MS.gene054606:CDS | 45.0% | |
| ! | GACAGTCCATCTTTTGCATC+TGG | + | chr3.4:89030328-89030347 | None:intergenic | 45.0% |
| ! | GTCAGCTTTGGTTGAAAAGG+TGG | - | chr3.4:89030345-89030364 | MS.gene054606:intron | 45.0% |
| ! | GTTTTACCTTTCTCTCCTGG+AGG | - | chr3.4:89030502-89030521 | MS.gene054606:CDS | 45.0% |
| CAACAGCTTCTCCACTTCCT+CGG | - | chr3.4:89029538-89029557 | MS.gene054606:CDS | 50.0% | |
| CAAGTGCTCAATCCTCTTGC+TGG | - | chr3.4:89030760-89030779 | MS.gene054606:CDS | 50.0% | |
| GCTACAAAGTCTAGTCGAGG+TGG | + | chr3.4:89030679-89030698 | None:intergenic | 50.0% | |
| GTCAAACCTCCAGGAGAGAA+AGG | + | chr3.4:89030511-89030530 | None:intergenic | 50.0% | |
| GTGGAGAAGCTGTTGTTGTG+TGG | + | chr3.4:89029533-89029552 | None:intergenic | 50.0% | |
| TCTCAATGGCAGCTCTGTCA+AGG | - | chr3.4:89030183-89030202 | MS.gene054606:intron | 50.0% | |
| TGACAGAGCTGCCATTGAGA+AGG | + | chr3.4:89030183-89030202 | None:intergenic | 50.0% | |
| TTGTTCAACCCACACACCGT+TGG | + | chr3.4:89029662-89029681 | None:intergenic | 50.0% | |
| ! | GGTTGGTACTTGATTCGCGA+TGG | + | chr3.4:89029369-89029388 | None:intergenic | 50.0% |
| ! | GTTAAGATGTCGACCGACTC+CGG | + | chr3.4:89030073-89030092 | None:intergenic | 50.0% |
| ACACACCGTTGGCAACAGAG+AGG | + | chr3.4:89029651-89029670 | None:intergenic | 55.0% | |
| CTCTGTTGCCAACGGTGTGT+GGG | - | chr3.4:89029651-89029670 | MS.gene054606:CDS | 55.0% | |
| TCTCTGTTGCCAACGGTGTG+TGG | - | chr3.4:89029650-89029669 | MS.gene054606:CDS | 55.0% | |
| TGGATTCAGAGCCGAGGAAG+TGG | + | chr3.4:89029552-89029571 | None:intergenic | 55.0% | |
| TTGCTCATCCTCATCGCTGC+TGG | - | chr3.4:89029496-89029515 | MS.gene054606:CDS | 55.0% | |
| ! | AGCGGCGTCTTTGAGGATGA+TGG | + | chr3.4:89029611-89029630 | None:intergenic | 55.0% |
| ! | GATCAGTGGATTCAGAGCCG+AGG | + | chr3.4:89029558-89029577 | None:intergenic | 55.0% |
| CCTCGCCTCTCTGTTGCCAA+CGG | - | chr3.4:89029643-89029662 | MS.gene054606:CDS | 60.0% | |
| TCTGAGAGCCAGCAGCGATG+AGG | + | chr3.4:89029507-89029526 | None:intergenic | 60.0% | |
| ! | AAGATGTCGACCGACTCCGG+AGG | + | chr3.4:89030070-89030089 | None:intergenic | 60.0% |
| AAAGACGCCGCTCCTGCTGG+TGG | - | chr3.4:89029619-89029638 | MS.gene054606:CDS | 65.0% | |
| CAGCAGGAGCGGCGTCTTTG+AGG | + | chr3.4:89029618-89029637 | None:intergenic | 65.0% | |
| CCGTTGGCAACAGAGAGGCG+AGG | + | chr3.4:89029646-89029665 | None:intergenic | 65.0% | |
| CTCAAAGACGCCGCTCCTGC+TGG | - | chr3.4:89029616-89029635 | MS.gene054606:CDS | 65.0% | |
| GAGAGGCGAGGACCACCAGC+AGG | + | chr3.4:89029634-89029653 | None:intergenic | 70.0% | |
| GCGAGGACCACCAGCAGGAG+CGG | + | chr3.4:89029629-89029648 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 89029325 | 89030792 | 89029325 | ID=MS.gene054606 |
| chr3.4 | mRNA | 89029325 | 89030792 | 89029325 | ID=MS.gene054606.t1;Parent=MS.gene054606 |
| chr3.4 | exon | 89030738 | 89030792 | 89030738 | ID=MS.gene054606.t1.exon1;Parent=MS.gene054606.t1 |
| chr3.4 | CDS | 89030738 | 89030792 | 89030738 | ID=cds.MS.gene054606.t1;Parent=MS.gene054606.t1 |
| chr3.4 | exon | 89030352 | 89030659 | 89030352 | ID=MS.gene054606.t1.exon2;Parent=MS.gene054606.t1 |
| chr3.4 | CDS | 89030352 | 89030659 | 89030352 | ID=cds.MS.gene054606.t1;Parent=MS.gene054606.t1 |
| chr3.4 | exon | 89029325 | 89030122 | 89029325 | ID=MS.gene054606.t1.exon3;Parent=MS.gene054606.t1 |
| chr3.4 | CDS | 89029325 | 89030122 | 89029325 | ID=cds.MS.gene054606.t1;Parent=MS.gene054606.t1 |
| Gene Sequence |
| Protein sequence |
