Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054612.t1 | XP_003602984.1 | 93.4 | 391 | 26 | 0 | 1 | 391 | 1 | 391 | 2.80E-204 | 721.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054612.t1 | Q9S7T8 | 50.1 | 389 | 186 | 4 | 5 | 387 | 4 | 390 | 4.4e-105 | 382.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054612.t1 | G7J5R9 | 93.4 | 391 | 26 | 0 | 1 | 391 | 1 | 391 | 2.0e-204 | 721.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054612 | MS.gene045585 | PPI |
| MS.gene054612 | MS.gene065944 | PPI |
| MS.gene054612 | MS.gene065945 | PPI |
| MS.gene054612 | MS.gene006610 | PPI |
| MS.gene054612 | MS.gene031697 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054612.t1 | MTR_3g101130 | 93.350 | 391 | 26 | 0 | 1 | 391 | 1 | 391 | 0.0 | 742 |
| MS.gene054612.t1 | MTR_3g101180 | 65.327 | 398 | 127 | 4 | 1 | 387 | 1 | 398 | 1.24e-178 | 503 |
| MS.gene054612.t1 | MTR_7g050750 | 63.590 | 390 | 137 | 2 | 5 | 389 | 7 | 396 | 1.48e-172 | 487 |
| MS.gene054612.t1 | MTR_8g461160 | 63.010 | 392 | 140 | 2 | 1 | 387 | 1 | 392 | 1.73e-170 | 482 |
| MS.gene054612.t1 | MTR_3g101010 | 63.239 | 389 | 136 | 3 | 5 | 389 | 4 | 389 | 1.71e-167 | 474 |
| MS.gene054612.t1 | MTR_7g050810 | 62.821 | 390 | 138 | 3 | 6 | 389 | 16 | 404 | 2.49e-166 | 471 |
| MS.gene054612.t1 | MTR_3g018740 | 62.755 | 392 | 135 | 5 | 1 | 387 | 1 | 386 | 1.36e-165 | 469 |
| MS.gene054612.t1 | MTR_3g101200 | 64.010 | 389 | 114 | 4 | 1 | 387 | 26 | 390 | 4.48e-165 | 468 |
| MS.gene054612.t1 | MTR_7g451890 | 60.668 | 389 | 148 | 2 | 6 | 389 | 14 | 402 | 1.65e-163 | 464 |
| MS.gene054612.t1 | MTR_4g045707 | 60.051 | 393 | 148 | 3 | 1 | 389 | 1 | 388 | 3.57e-161 | 458 |
| MS.gene054612.t1 | MTR_8g027395 | 59.898 | 394 | 145 | 4 | 1 | 389 | 12 | 397 | 4.69e-159 | 453 |
| MS.gene054612.t1 | MTR_7g047780 | 59.897 | 389 | 151 | 2 | 6 | 389 | 14 | 402 | 8.36e-159 | 452 |
| MS.gene054612.t1 | MTR_4g088525 | 63.085 | 363 | 125 | 3 | 30 | 388 | 11 | 368 | 4.37e-158 | 449 |
| MS.gene054612.t1 | MTR_3g101030 | 58.270 | 393 | 145 | 3 | 15 | 389 | 38 | 429 | 5.99e-155 | 444 |
| MS.gene054612.t1 | MTR_8g027420 | 58.524 | 393 | 141 | 5 | 1 | 389 | 1 | 375 | 3.57e-152 | 434 |
| MS.gene054612.t1 | MTR_2g046030 | 56.777 | 391 | 153 | 6 | 5 | 387 | 4 | 386 | 4.93e-148 | 424 |
| MS.gene054612.t1 | MTR_2g045980 | 56.522 | 391 | 154 | 5 | 5 | 387 | 4 | 386 | 6.55e-148 | 424 |
| MS.gene054612.t1 | MTR_3g048000 | 56.848 | 387 | 139 | 5 | 7 | 388 | 28 | 391 | 3.50e-145 | 417 |
| MS.gene054612.t1 | MTR_4g088535 | 56.555 | 389 | 141 | 6 | 1 | 384 | 1 | 366 | 2.12e-139 | 402 |
| MS.gene054612.t1 | MTR_3g101050 | 55.928 | 388 | 146 | 8 | 7 | 388 | 29 | 397 | 1.87e-134 | 390 |
| MS.gene054612.t1 | MTR_3g015620 | 55.784 | 389 | 139 | 6 | 6 | 387 | 16 | 378 | 7.39e-132 | 383 |
| MS.gene054612.t1 | MTR_3g102920 | 53.807 | 394 | 139 | 5 | 1 | 388 | 53 | 409 | 9.98e-131 | 381 |
| MS.gene054612.t1 | MTR_3g101190 | 52.066 | 363 | 106 | 4 | 31 | 389 | 14 | 312 | 3.11e-116 | 341 |
| MS.gene054612.t1 | MTR_3g100995 | 64.822 | 253 | 85 | 2 | 139 | 389 | 14 | 264 | 6.89e-115 | 335 |
| MS.gene054612.t1 | MTR_7g050830 | 54.140 | 314 | 113 | 2 | 6 | 299 | 16 | 318 | 2.99e-107 | 318 |
| MS.gene054612.t1 | MTR_3g015760 | 61.069 | 262 | 91 | 4 | 132 | 387 | 23 | 279 | 5.52e-97 | 291 |
| MS.gene054612.t1 | MTR_3g018747 | 58.238 | 261 | 88 | 3 | 132 | 387 | 9 | 253 | 7.32e-97 | 289 |
| MS.gene054612.t1 | MTR_3g100010 | 48.408 | 314 | 114 | 3 | 31 | 311 | 40 | 338 | 1.21e-96 | 292 |
| MS.gene054612.t1 | MTR_3g100520 | 57.848 | 223 | 74 | 4 | 173 | 389 | 1 | 209 | 2.06e-83 | 253 |
| MS.gene054612.t1 | MTR_3g111160 | 61.395 | 215 | 75 | 2 | 180 | 389 | 9 | 220 | 1.57e-82 | 251 |
| MS.gene054612.t1 | MTR_3g114310 | 41.470 | 381 | 198 | 10 | 28 | 389 | 36 | 410 | 1.39e-81 | 256 |
| MS.gene054612.t1 | MTR_3g101110 | 53.750 | 240 | 78 | 3 | 135 | 367 | 71 | 284 | 1.49e-75 | 236 |
| MS.gene054612.t1 | MTR_2g046410 | 57.971 | 207 | 76 | 3 | 189 | 387 | 144 | 347 | 5.69e-75 | 237 |
| MS.gene054612.t1 | MTR_3g099970 | 59.487 | 195 | 60 | 2 | 132 | 323 | 20 | 198 | 7.51e-75 | 231 |
| MS.gene054612.t1 | MTR_3g101020 | 57.609 | 184 | 54 | 2 | 206 | 389 | 1 | 160 | 2.09e-63 | 200 |
| MS.gene054612.t1 | MTR_3g101150 | 62.577 | 163 | 44 | 3 | 238 | 388 | 1 | 158 | 1.22e-61 | 196 |
| MS.gene054612.t1 | MTR_3g102870 | 60.544 | 147 | 54 | 1 | 198 | 340 | 4 | 150 | 5.82e-54 | 176 |
| MS.gene054612.t1 | MTR_3g111150 | 48.045 | 179 | 67 | 3 | 8 | 186 | 1 | 153 | 3.57e-48 | 161 |
| MS.gene054612.t1 | MTR_3g100990 | 62.016 | 129 | 47 | 1 | 4 | 132 | 3 | 129 | 2.42e-42 | 155 |
| MS.gene054612.t1 | MTR_3g101140 | 71.014 | 69 | 20 | 0 | 321 | 389 | 48 | 116 | 6.49e-25 | 98.6 |
| MS.gene054612.t1 | MTR_4g093550 | 51.648 | 91 | 42 | 1 | 1 | 91 | 1 | 89 | 4.71e-20 | 84.7 |
| MS.gene054612.t1 | MTR_6g046890 | 62.121 | 66 | 25 | 0 | 23 | 88 | 14 | 79 | 1.44e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054612.t1 | AT1G47710 | 50.129 | 389 | 186 | 4 | 5 | 387 | 4 | 390 | 3.79e-134 | 389 |
| MS.gene054612.t1 | AT1G47710 | 50.129 | 389 | 186 | 4 | 5 | 387 | 31 | 417 | 2.31e-133 | 389 |
| MS.gene054612.t1 | AT3G45220 | 43.970 | 398 | 194 | 6 | 6 | 386 | 5 | 390 | 3.67e-112 | 333 |
| MS.gene054612.t1 | AT2G25240 | 44.987 | 389 | 195 | 7 | 6 | 386 | 5 | 382 | 3.84e-110 | 328 |
| MS.gene054612.t1 | AT2G26390 | 42.857 | 392 | 203 | 6 | 6 | 386 | 5 | 386 | 6.46e-104 | 312 |
| MS.gene054612.t1 | AT1G62170 | 42.077 | 366 | 186 | 4 | 29 | 388 | 88 | 433 | 2.10e-94 | 290 |
| MS.gene054612.t1 | AT2G14540 | 44.044 | 361 | 181 | 3 | 29 | 386 | 55 | 397 | 6.61e-94 | 287 |
| MS.gene054612.t1 | AT1G64030 | 41.902 | 389 | 198 | 7 | 5 | 386 | 4 | 371 | 2.32e-91 | 280 |
| MS.gene054612.t1 | AT1G62170 | 38.596 | 399 | 186 | 5 | 29 | 388 | 88 | 466 | 1.71e-87 | 273 |
| MS.gene054612.t1 | AT2G35580 | 38.817 | 389 | 210 | 9 | 5 | 386 | 4 | 371 | 2.28e-84 | 262 |
| MS.gene054612.t1 | AT1G64010 | 45.116 | 215 | 97 | 4 | 173 | 386 | 1 | 195 | 8.79e-60 | 192 |
| MS.gene054612.t1 | AT1G64010 | 44.500 | 200 | 90 | 4 | 188 | 386 | 2 | 181 | 1.34e-52 | 173 |
| MS.gene054612.t1 | AT1G62160 | 39.196 | 199 | 96 | 5 | 195 | 388 | 42 | 220 | 1.81e-33 | 124 |
| MS.gene054612.t1 | AT1G63280 | 50.000 | 118 | 55 | 2 | 129 | 244 | 5 | 120 | 6.24e-32 | 117 |
| MS.gene054612.t1 | AT1G51330 | 44.792 | 96 | 53 | 0 | 130 | 225 | 29 | 124 | 1.03e-24 | 100 |
| MS.gene054612.t1 | AT1G64020 | 38.889 | 108 | 62 | 4 | 15 | 121 | 14 | 118 | 1.47e-12 | 64.7 |
Find 72 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTATACTTTAA+AGG | 0.155210 | 3.4:+89100314 | MS.gene054612:CDS |
| CCACGTTTCAAAATTTCTTC+TGG | 0.223557 | 3.4:+89100644 | MS.gene054612:CDS |
| ATATCATTGCCTTTCTTATA+AGG | 0.269050 | 3.4:-89100482 | None:intergenic |
| TTCATTGAAGTAAATGAAAA+AGG | 0.281273 | 3.4:+89100782 | MS.gene054612:CDS |
| AAATGGCGGACTCTCCGATT+TGG | 0.309899 | 3.4:+89100735 | MS.gene054612:CDS |
| GGTGATGTTCATAGCATTCT+TGG | 0.325055 | 3.4:-89099747 | None:intergenic |
| GGAAAAGAGGTGAGAGGATA+AGG | 0.329026 | 3.4:-89099930 | None:intergenic |
| TCTAATGTATCAAAAGAGTT+AGG | 0.361143 | 3.4:+89100677 | MS.gene054612:CDS |
| AATGGCGGACTCTCCGATTT+GGG | 0.369720 | 3.4:+89100736 | MS.gene054612:CDS |
| AGTAGCAACAATTTCTTTGA+AGG | 0.389170 | 3.4:-89100044 | None:intergenic |
| CGTCAGCTTCTCTCCTTCCT+TGG | 0.391854 | 3.4:+89099881 | MS.gene054612:CDS |
| ATTAGTGATGTTCTTTCACC+TGG | 0.400115 | 3.4:+89100260 | MS.gene054612:CDS |
| CTACTATGCTGAGCACAGTT+TGG | 0.403622 | 3.4:-89099832 | None:intergenic |
| CTCTTGCATCGGGAAGAAAA+AGG | 0.404907 | 3.4:-89100523 | None:intergenic |
| CAAGTGCTCAATCCTCTTGC+TGG | 0.409645 | 3.4:+89100950 | MS.gene054612:CDS |
| GTTAGCTTTGATTGAGAAAG+TGG | 0.425057 | 3.4:+89100553 | MS.gene054612:CDS |
| GCTGCTGCAGTCACTACAAC+TGG | 0.430882 | 3.4:+89100812 | MS.gene054612:CDS |
| TCTGGTGCAATACTCTTTGT+TGG | 0.432365 | 3.4:+89100926 | MS.gene054612:CDS |
| CAGCAAGAGGATTGAGCACT+TGG | 0.440443 | 3.4:-89100949 | None:intergenic |
| TACAACTGGATTACTACAAA+TGG | 0.445129 | 3.4:+89100826 | MS.gene054612:CDS |
| CTTCTTCTTGCTAGTCATGA+AGG | 0.449150 | 3.4:-89100417 | None:intergenic |
| AGTTTGTGTTTCAAAATCTC+AGG | 0.451018 | 3.4:-89100584 | None:intergenic |
| TTGTGTCGGACCCTCGGAAC+CGG | 0.453396 | 3.4:-89099858 | None:intergenic |
| CTCCGTCTTCCTTATAAGAA+AGG | 0.468293 | 3.4:+89100473 | MS.gene054612:CDS |
| GAAGGAAGGGTAAACAGAAA+AGG | 0.470210 | 3.4:-89100026 | None:intergenic |
| AACAATCCATCTCTTGCATC+GGG | 0.475826 | 3.4:-89100533 | None:intergenic |
| GGTCAGCAACAAAGTCTATC+GGG | 0.476021 | 3.4:-89100871 | None:intergenic |
| GTGTTTCAAAATCTCAGGTT+TGG | 0.477894 | 3.4:-89100579 | None:intergenic |
| GTCAAACCACCAGCAGAGAA+AGG | 0.480295 | 3.4:-89100710 | None:intergenic |
| CAACAATTTCTTTGAAGGAA+GGG | 0.481798 | 3.4:-89100039 | None:intergenic |
| GCAACAATTTCTTTGAAGGA+AGG | 0.489739 | 3.4:-89100040 | None:intergenic |
| TTGATAAGAGACGATCTGTC+TGG | 0.490675 | 3.4:+89100908 | MS.gene054612:CDS |
| TTAAATTAGCGATTGATTCA+CGG | 0.491730 | 3.4:-89099724 | None:intergenic |
| TCTCGGTGGCAGCTCAATCA+AGG | 0.492253 | 3.4:+89100391 | MS.gene054612:CDS |
| CATAGTAGCTGCCGGTTCCG+AGG | 0.494572 | 3.4:+89099847 | MS.gene054612:CDS |
| GAGAGGATAAGGAGTTGAGA+TGG | 0.502008 | 3.4:-89099919 | None:intergenic |
| AGACAACTGTGGACCACCAT+AGG | 0.503886 | 3.4:-89099975 | None:intergenic |
| TAAGGAGTTGAGATGGTCAA+TGG | 0.510048 | 3.4:-89099912 | None:intergenic |
| TGCCTTTCTTATAAGGAAGA+CGG | 0.518934 | 3.4:-89100475 | None:intergenic |
| TGGTCAGCAACAAAGTCTAT+CGG | 0.525482 | 3.4:-89100872 | None:intergenic |
| TAACAATCCATCTCTTGCAT+CGG | 0.531098 | 3.4:-89100534 | None:intergenic |
| TTTCTTCCCGATGCAAGAGA+TGG | 0.533391 | 3.4:+89100527 | MS.gene054612:CDS |
| GAAACACAAACTTCCACGTA+AGG | 0.535930 | 3.4:+89100595 | MS.gene054612:CDS |
| CTAGACGACGCTGCTCCCTA+TGG | 0.544397 | 3.4:+89099959 | MS.gene054612:CDS |
| AATATGTTAGAAACCCAAAT+CGG | 0.552609 | 3.4:-89100749 | None:intergenic |
| ATAGTAGCTGCCGGTTCCGA+GGG | 0.555454 | 3.4:+89099848 | MS.gene054612:CDS |
| CTGACGTTGTGTCGGACCCT+CGG | 0.555565 | 3.4:-89099864 | None:intergenic |
| CCACGTAAGGAAGTGATAGT+TGG | 0.557014 | 3.4:+89100608 | MS.gene054612:CDS |
| CGTCTAGCACAGAGGAAAAG+AGG | 0.559719 | 3.4:-89099943 | None:intergenic |
| GTGCTCAGCATAGTAGCTGC+CGG | 0.569522 | 3.4:+89099839 | MS.gene054612:CDS |
| TTCTTCTTGCTAGTCATGAA+GGG | 0.570100 | 3.4:-89100416 | None:intergenic |
| CACTATACTTTAAAGGAGCA+TGG | 0.570932 | 3.4:+89100321 | MS.gene054612:CDS |
| CCAACTATCACTTCCTTACG+TGG | 0.582417 | 3.4:-89100608 | None:intergenic |
| GCAACAAAGTCTATCGGGGT+CGG | 0.602278 | 3.4:-89100866 | None:intergenic |
| TGATTGAGCTGCCACCGAGA+AGG | 0.604903 | 3.4:-89100388 | None:intergenic |
| GACAACTGTGGACCACCATA+GGG | 0.607442 | 3.4:-89099974 | None:intergenic |
| GAGAGAAGCTGACGTTGTGT+CGG | 0.614776 | 3.4:-89099872 | None:intergenic |
| ATCGGGGTCGGAATTGAAGT+AGG | 0.617916 | 3.4:-89100854 | None:intergenic |
| AGCAGCGTCGTCTAGCACAG+AGG | 0.630122 | 3.4:-89099951 | None:intergenic |
| ATCGCTTGATTTCATAAACA+AGG | 0.632810 | 3.4:+89100087 | MS.gene054612:CDS |
| CACAGAGGAAAAGAGGTGAG+AGG | 0.632829 | 3.4:-89099936 | None:intergenic |
| AGCACAGTTTGGAGTGACAA+CGG | 0.634618 | 3.4:-89099821 | None:intergenic |
| GAAATCAAGCGATCTGAGAG+TGG | 0.637649 | 3.4:-89100077 | None:intergenic |
| TTAGTGATGTTCTTTCACCT+GGG | 0.638192 | 3.4:+89100261 | MS.gene054612:CDS |
| AATTATGATCTACCAGCAAG+AGG | 0.639886 | 3.4:-89100962 | None:intergenic |
| GACGACGCTGCTCCCTATGG+TGG | 0.640142 | 3.4:+89099962 | MS.gene054612:CDS |
| CACCGAGAAGGTGAAAATCA+CGG | 0.643065 | 3.4:-89100376 | None:intergenic |
| GTTAAGCTATCAATTGACCC+AGG | 0.685707 | 3.4:-89100278 | None:intergenic |
| GTCAGCAACAAAGTCTATCG+GGG | 0.687796 | 3.4:-89100870 | None:intergenic |
| TGTCGTAAAGGCTGATGATG+CGG | 0.712450 | 3.4:+89100193 | MS.gene054612:intron |
| AATTAGCGATTGATTCACGG+TGG | 0.714709 | 3.4:-89099721 | None:intergenic |
| GAGTTGACAAAAGACAACTG+TGG | 0.767839 | 3.4:-89099986 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAGAAGGAAAATATATAT+AGG | - | chr3.4:89100115-89100134 | None:intergenic | 20.0% |
| !! | TTCATTGAAGTAAATGAAAA+AGG | + | chr3.4:89100782-89100801 | MS.gene054612:CDS | 20.0% |
| !!! | TGTTTTTGATAACAAATGTT+TGG | - | chr3.4:89099771-89099790 | None:intergenic | 20.0% |
| !!! | TTTTATTGTTTTAGAGAAGA+AGG | - | chr3.4:89100129-89100148 | None:intergenic | 20.0% |
| ! | AATATGTTAGAAACCCAAAT+CGG | - | chr3.4:89100752-89100771 | None:intergenic | 25.0% |
| ! | ATATCATTGCCTTTCTTATA+AGG | - | chr3.4:89100485-89100504 | None:intergenic | 25.0% |
| ! | CTCTTATCAAAAACATGAAA+GGG | - | chr3.4:89100898-89100917 | None:intergenic | 25.0% |
| ! | GGTTAAAAAAGTGAATGTAT+GGG | + | chr3.4:89100214-89100233 | MS.gene054612:CDS | 25.0% |
| ! | TATATTTGATGTTGTCGTAA+AGG | + | chr3.4:89100181-89100200 | MS.gene054612:intron | 25.0% |
| ! | TCTAATGTATCAAAAGAGTT+AGG | + | chr3.4:89100677-89100696 | MS.gene054612:CDS | 25.0% |
| ! | TCTCTTATCAAAAACATGAA+AGG | - | chr3.4:89100899-89100918 | None:intergenic | 25.0% |
| !! | CAGTTTATAAATGCTTTTGA+TGG | + | chr3.4:89100440-89100459 | MS.gene054612:CDS | 25.0% |
| !! | TTAAATTAGCGATTGATTCA+CGG | - | chr3.4:89099727-89099746 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTGATGCATCAAA+TGG | - | chr3.4:89100353-89100372 | None:intergenic | 25.0% |
| AGTAGCAACAATTTCTTTGA+AGG | - | chr3.4:89100047-89100066 | None:intergenic | 30.0% | |
| AGTTTGTGTTTCAAAATCTC+AGG | - | chr3.4:89100587-89100606 | None:intergenic | 30.0% | |
| ATCGCTTGATTTCATAAACA+AGG | + | chr3.4:89100087-89100106 | MS.gene054612:CDS | 30.0% | |
| CGGTTAAAAAAGTGAATGTA+TGG | + | chr3.4:89100213-89100232 | MS.gene054612:CDS | 30.0% | |
| GCTAATGCACTATACTTTAA+AGG | + | chr3.4:89100314-89100333 | MS.gene054612:CDS | 30.0% | |
| TACAACTGGATTACTACAAA+TGG | + | chr3.4:89100826-89100845 | MS.gene054612:CDS | 30.0% | |
| TTATCAAAAACATGAAAGGG+TGG | - | chr3.4:89100895-89100914 | None:intergenic | 30.0% | |
| ! | CAACAATTTCTTTGAAGGAA+GGG | - | chr3.4:89100042-89100061 | None:intergenic | 30.0% |
| ATTAGTGATGTTCTTTCACC+TGG | + | chr3.4:89100260-89100279 | MS.gene054612:CDS | 35.0% | |
| CCACGTTTCAAAATTTCTTC+TGG | + | chr3.4:89100644-89100663 | MS.gene054612:CDS | 35.0% | |
| GTGTTTCAAAATCTCAGGTT+TGG | - | chr3.4:89100582-89100601 | None:intergenic | 35.0% | |
| TAACAATCCATCTCTTGCAT+CGG | - | chr3.4:89100537-89100556 | None:intergenic | 35.0% | |
| TGCCTTTCTTATAAGGAAGA+CGG | - | chr3.4:89100478-89100497 | None:intergenic | 35.0% | |
| TGGGCTAAAAAAGAGACAAA+CGG | + | chr3.4:89100233-89100252 | MS.gene054612:CDS | 35.0% | |
| TTAGTGATGTTCTTTCACCT+GGG | + | chr3.4:89100261-89100280 | MS.gene054612:CDS | 35.0% | |
| TTCTTCTTGCTAGTCATGAA+GGG | - | chr3.4:89100419-89100438 | None:intergenic | 35.0% | |
| ! | CACTATACTTTAAAGGAGCA+TGG | + | chr3.4:89100321-89100340 | MS.gene054612:CDS | 35.0% |
| ! | GCAACAATTTCTTTGAAGGA+AGG | - | chr3.4:89100043-89100062 | None:intergenic | 35.0% |
| !! | AATGGATTTTGATCCAAGGA+AGG | - | chr3.4:89099897-89099916 | None:intergenic | 35.0% |
| !! | GTTAGCTTTGATTGAGAAAG+TGG | + | chr3.4:89100553-89100572 | MS.gene054612:CDS | 35.0% |
| !!! | CCAGAAGAAATTTTGAAACG+TGG | - | chr3.4:89100647-89100666 | None:intergenic | 35.0% |
| AACAATCCATCTCTTGCATC+GGG | - | chr3.4:89100536-89100555 | None:intergenic | 40.0% | |
| CTCCGTCTTCCTTATAAGAA+AGG | + | chr3.4:89100473-89100492 | MS.gene054612:CDS | 40.0% | |
| CTTCTTCTTGCTAGTCATGA+AGG | - | chr3.4:89100420-89100439 | None:intergenic | 40.0% | |
| GAAACACAAACTTCCACGTA+AGG | + | chr3.4:89100595-89100614 | MS.gene054612:CDS | 40.0% | |
| GAAGGAAGGGTAAACAGAAA+AGG | - | chr3.4:89100029-89100048 | None:intergenic | 40.0% | |
| GAGTTGACAAAAGACAACTG+TGG | - | chr3.4:89099989-89100008 | None:intergenic | 40.0% | |
| GGTGATGTTCATAGCATTCT+TGG | - | chr3.4:89099750-89099769 | None:intergenic | 40.0% | |
| GTTAAGCTATCAATTGACCC+AGG | - | chr3.4:89100281-89100300 | None:intergenic | 40.0% | |
| TAAGGAGTTGAGATGGTCAA+TGG | - | chr3.4:89099915-89099934 | None:intergenic | 40.0% | |
| TCTGGTGCAATACTCTTTGT+TGG | + | chr3.4:89100926-89100945 | MS.gene054612:CDS | 40.0% | |
| TGCTGGTGGTTTGACAAAAA+TGG | + | chr3.4:89100718-89100737 | MS.gene054612:CDS | 40.0% | |
| TGGTCAGCAACAAAGTCTAT+CGG | - | chr3.4:89100875-89100894 | None:intergenic | 40.0% | |
| TGGTGGTTTGACAAAAATGG+CGG | + | chr3.4:89100721-89100740 | MS.gene054612:CDS | 40.0% | |
| TTGATAAGAGACGATCTGTC+TGG | + | chr3.4:89100908-89100927 | MS.gene054612:CDS | 40.0% | |
| ! | AATTAGCGATTGATTCACGG+TGG | - | chr3.4:89099724-89099743 | None:intergenic | 40.0% |
| ! | TGTCTTTTGTCAACTCTGTG+TGG | + | chr3.4:89099993-89100012 | MS.gene054612:CDS | 40.0% |
| !! | GGTCAATGGATTTTGATCCA+AGG | - | chr3.4:89099901-89099920 | None:intergenic | 40.0% |
| !! | GTTGTTTTACCTTTCTCTGC+TGG | + | chr3.4:89100701-89100720 | MS.gene054612:CDS | 40.0% |
| CACCGAGAAGGTGAAAATCA+CGG | - | chr3.4:89100379-89100398 | None:intergenic | 45.0% | |
| CCAACTATCACTTCCTTACG+TGG | - | chr3.4:89100611-89100630 | None:intergenic | 45.0% | |
| CCACGTAAGGAAGTGATAGT+TGG | + | chr3.4:89100608-89100627 | MS.gene054612:CDS | 45.0% | |
| CTACTATGCTGAGCACAGTT+TGG | - | chr3.4:89099835-89099854 | None:intergenic | 45.0% | |
| CTCTTGCATCGGGAAGAAAA+AGG | - | chr3.4:89100526-89100545 | None:intergenic | 45.0% | |
| GAAATCAAGCGATCTGAGAG+TGG | - | chr3.4:89100080-89100099 | None:intergenic | 45.0% | |
| GAGAGGATAAGGAGTTGAGA+TGG | - | chr3.4:89099922-89099941 | None:intergenic | 45.0% | |
| GGAAAAGAGGTGAGAGGATA+AGG | - | chr3.4:89099933-89099952 | None:intergenic | 45.0% | |
| GGTCAGCAACAAAGTCTATC+GGG | - | chr3.4:89100874-89100893 | None:intergenic | 45.0% | |
| GTCAGCAACAAAGTCTATCG+GGG | - | chr3.4:89100873-89100892 | None:intergenic | 45.0% | |
| TTTCTTCCCGATGCAAGAGA+TGG | + | chr3.4:89100527-89100546 | MS.gene054612:CDS | 45.0% | |
| ! | AGCACAGTTTGGAGTGACAA+CGG | - | chr3.4:89099824-89099843 | None:intergenic | 45.0% |
| ! | GACCGTGATTTTCACCTTCT+CGG | + | chr3.4:89100374-89100393 | MS.gene054612:CDS | 45.0% |
| ! | GTTTTACCTTTCTCTGCTGG+TGG | + | chr3.4:89100704-89100723 | MS.gene054612:CDS | 45.0% |
| ! | TGTCGTAAAGGCTGATGATG+CGG | + | chr3.4:89100193-89100212 | MS.gene054612:intron | 45.0% |
| AGACAACTGTGGACCACCAT+AGG | - | chr3.4:89099978-89099997 | None:intergenic | 50.0% | |
| ATCGGGGTCGGAATTGAAGT+AGG | - | chr3.4:89100857-89100876 | None:intergenic | 50.0% | |
| CAAGTGCTCAATCCTCTTGC+TGG | + | chr3.4:89100950-89100969 | MS.gene054612:CDS | 50.0% | |
| CACAGAGGAAAAGAGGTGAG+AGG | - | chr3.4:89099939-89099958 | None:intergenic | 50.0% | |
| CAGCAAGAGGATTGAGCACT+TGG | - | chr3.4:89100952-89100971 | None:intergenic | 50.0% | |
| CGTCTAGCACAGAGGAAAAG+AGG | - | chr3.4:89099946-89099965 | None:intergenic | 50.0% | |
| GACAACTGTGGACCACCATA+GGG | - | chr3.4:89099977-89099996 | None:intergenic | 50.0% | |
| GAGAGAAGCTGACGTTGTGT+CGG | - | chr3.4:89099875-89099894 | None:intergenic | 50.0% | |
| GCAACAAAGTCTATCGGGGT+CGG | - | chr3.4:89100869-89100888 | None:intergenic | 50.0% | |
| GTCAAACCACCAGCAGAGAA+AGG | - | chr3.4:89100713-89100732 | None:intergenic | 50.0% | |
| ! | CGTGATTTTCACCTTCTCGG+TGG | + | chr3.4:89100377-89100396 | MS.gene054612:CDS | 50.0% |
| !! | AAATGGCGGACTCTCCGATT+TGG | + | chr3.4:89100735-89100754 | MS.gene054612:CDS | 50.0% |
| !! | AATGGCGGACTCTCCGATTT+GGG | + | chr3.4:89100736-89100755 | MS.gene054612:CDS | 50.0% |
| CGTCAGCTTCTCTCCTTCCT+TGG | + | chr3.4:89099881-89099900 | MS.gene054612:CDS | 55.0% | |
| GCTGCTGCAGTCACTACAAC+TGG | + | chr3.4:89100812-89100831 | MS.gene054612:CDS | 55.0% | |
| GTGCTCAGCATAGTAGCTGC+CGG | + | chr3.4:89099839-89099858 | MS.gene054612:CDS | 55.0% | |
| TCTCGGTGGCAGCTCAATCA+AGG | + | chr3.4:89100391-89100410 | MS.gene054612:CDS | 55.0% | |
| TGATTGAGCTGCCACCGAGA+AGG | - | chr3.4:89100391-89100410 | None:intergenic | 55.0% | |
| !! | ATAGTAGCTGCCGGTTCCGA+GGG | + | chr3.4:89099848-89099867 | MS.gene054612:CDS | 55.0% |
| AGCAGCGTCGTCTAGCACAG+AGG | - | chr3.4:89099954-89099973 | None:intergenic | 60.0% | |
| CTAGACGACGCTGCTCCCTA+TGG | + | chr3.4:89099959-89099978 | MS.gene054612:CDS | 60.0% | |
| CTGACGTTGTGTCGGACCCT+CGG | - | chr3.4:89099867-89099886 | None:intergenic | 60.0% | |
| TTGTGTCGGACCCTCGGAAC+CGG | - | chr3.4:89099861-89099880 | None:intergenic | 60.0% | |
| !! | CATAGTAGCTGCCGGTTCCG+AGG | + | chr3.4:89099847-89099866 | MS.gene054612:CDS | 60.0% |
| GACGACGCTGCTCCCTATGG+TGG | + | chr3.4:89099962-89099981 | MS.gene054612:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 89099713 | 89100982 | 89099713 | ID=MS.gene054612 |
| chr3.4 | mRNA | 89099713 | 89100982 | 89099713 | ID=MS.gene054612.t1;Parent=MS.gene054612 |
| chr3.4 | exon | 89099713 | 89100108 | 89099713 | ID=MS.gene054612.t1.exon1;Parent=MS.gene054612.t1 |
| chr3.4 | CDS | 89099713 | 89100108 | 89099713 | ID=cds.MS.gene054612.t1;Parent=MS.gene054612.t1 |
| chr3.4 | exon | 89100203 | 89100982 | 89100203 | ID=MS.gene054612.t1.exon2;Parent=MS.gene054612.t1 |
| chr3.4 | CDS | 89100203 | 89100982 | 89100203 | ID=cds.MS.gene054612.t1;Parent=MS.gene054612.t1 |
| Gene Sequence |
| Protein sequence |
