Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054881.t1 | XP_024625946.1 | 98 | 405 | 8 | 0 | 1 | 405 | 1 | 405 | 4.30E-232 | 813.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054881.t1 | Q94K49 | 67.3 | 397 | 116 | 3 | 1 | 386 | 1 | 394 | 2.8e-155 | 549.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054881.t1 | A0A396HAZ6 | 98.0 | 405 | 8 | 0 | 1 | 405 | 1 | 405 | 3.1e-232 | 813.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene054881 | 0.819994 | 8.67E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054881.t1 | AT3G63270 | 70.492 | 366 | 104 | 2 | 22 | 386 | 32 | 394 | 0.0 | 550 |
| MS.gene054881.t1 | AT3G55350 | 47.222 | 360 | 173 | 6 | 32 | 386 | 52 | 399 | 3.52e-114 | 340 |
| MS.gene054881.t1 | AT5G12010 | 27.887 | 355 | 220 | 9 | 56 | 401 | 173 | 500 | 4.80e-40 | 149 |
| MS.gene054881.t1 | AT4G29780 | 25.946 | 370 | 234 | 13 | 28 | 388 | 193 | 531 | 4.03e-30 | 122 |
| MS.gene054881.t1 | AT3G19120 | 29.043 | 303 | 202 | 8 | 96 | 390 | 146 | 443 | 2.21e-27 | 113 |
| MS.gene054881.t1 | AT1G72275 | 26.804 | 291 | 170 | 10 | 61 | 347 | 100 | 351 | 3.28e-20 | 92.4 |
| MS.gene054881.t1 | AT1G72275 | 26.804 | 291 | 170 | 10 | 61 | 347 | 100 | 351 | 3.61e-20 | 92.0 |
Find 89 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTGGTGGGAATCTTTC+TGG | 0.139911 | 7.3:+15530262 | MS.gene054881:CDS |
| AATGGAAATGTTAGAAATTT+AGG | 0.151189 | 7.3:+15531355 | MS.gene054881:CDS |
| CCAATCAACTTCATTGGTTT+TGG | 0.153961 | 7.3:-15530247 | None:intergenic |
| CAATGCAACCTCTGGATTTA+AGG | 0.161356 | 7.3:-15531656 | None:intergenic |
| TCTTCTTCTTTGGTTTCTTC+TGG | 0.190103 | 7.3:-15530179 | None:intergenic |
| AAGGGTTTAAGTACTTCTTT+AGG | 0.258988 | 7.3:+15530780 | MS.gene054881:CDS |
| AAGGACCGTGCGAGAAAATT+TGG | 0.269963 | 7.3:+15531738 | MS.gene054881:CDS |
| GTCTCGGTTGGAGCTTCTTT+TGG | 0.280937 | 7.3:+15530959 | MS.gene054881:CDS |
| CTTCTTTGGTTTCTTCTGGA+TGG | 0.323168 | 7.3:-15530175 | None:intergenic |
| TTGTCTGATCATCATGATTC+AGG | 0.330253 | 7.3:+15531676 | MS.gene054881:CDS |
| TTCTTTGGTTTCTTCTGGAT+GGG | 0.350645 | 7.3:-15530174 | None:intergenic |
| AAGTTGCTATTGCTCTTAGA+AGG | 0.366769 | 7.3:+15530915 | MS.gene054881:CDS |
| TCCTGCATTCTATCGGAATC+AGG | 0.375908 | 7.3:-15531064 | None:intergenic |
| CTTGCTTGCAATACTGTTCT+CGG | 0.380182 | 7.3:-15531702 | None:intergenic |
| TGCAAGCAAGTTGATCCTTC+AGG | 0.383951 | 7.3:+15531715 | MS.gene054881:CDS |
| GATATTGTGACAGGTTTGCC+TGG | 0.385360 | 7.3:+15531262 | MS.gene054881:CDS |
| TTCCCACCAATCAACTTCAT+TGG | 0.388446 | 7.3:-15530253 | None:intergenic |
| AACCCTTGTGACTCATCATT+AGG | 0.406907 | 7.3:-15530764 | None:intergenic |
| GCGCTAAACGTCATCTGAAT+TGG | 0.409730 | 7.3:+15531041 | MS.gene054881:CDS |
| AGGGTTTAAGTACTTCTTTA+GGG | 0.410115 | 7.3:+15530781 | MS.gene054881:CDS |
| TCAATAGCTCCACAGCAATT+AGG | 0.444465 | 7.3:-15531121 | None:intergenic |
| CAAAACGGGGAGCGTTTGAA+TGG | 0.450386 | 7.3:+15531337 | MS.gene054881:CDS |
| GCTCTTAGAAGGTTGGCATC+TGG | 0.451342 | 7.3:+15530926 | MS.gene054881:CDS |
| ACAGTTATCCTCTTCTTCCA+TGG | 0.457258 | 7.3:+15531413 | MS.gene054881:CDS |
| CGACGGTTTCACAGGTGACT+TGG | 0.459760 | 7.3:+15530993 | MS.gene054881:CDS |
| CTTAATTTCCTGCATTCTAT+CGG | 0.462253 | 7.3:-15531071 | None:intergenic |
| TGCTATTGCTCTTAGAAGGT+TGG | 0.463845 | 7.3:+15530919 | MS.gene054881:CDS |
| CATTCCATGTTGTATATGCT+TGG | 0.469743 | 7.3:-15531761 | None:intergenic |
| AGATTCATTGATATTGTGAC+AGG | 0.471542 | 7.3:+15531253 | MS.gene054881:CDS |
| TGATCAGACAATGCAACCTC+TGG | 0.476463 | 7.3:-15531664 | None:intergenic |
| TTTCACTGTTGAAAGGGAGT+TGG | 0.479014 | 7.3:+15531530 | MS.gene054881:CDS |
| AGAATGCAGGAAATTAAGTC+TGG | 0.479770 | 7.3:+15531076 | MS.gene054881:CDS |
| TTCGTGTTTGTGATTAAAAG+TGG | 0.489358 | 7.3:-15531479 | None:intergenic |
| CCAAAACCAATGAAGTTGAT+TGG | 0.489737 | 7.3:+15530247 | MS.gene054881:CDS |
| GAGTTGGAAAATCCTTAGTA+AGG | 0.490079 | 7.3:+15531546 | MS.gene054881:CDS |
| AATACATATGTTCTCTTGTG+AGG | 0.490441 | 7.3:+15530822 | MS.gene054881:CDS |
| TCATCTGAGGTTTGAACAGC+CGG | 0.490914 | 7.3:-15531169 | None:intergenic |
| AATTACAGCATGTTGTTACA+AGG | 0.500789 | 7.3:+15531211 | MS.gene054881:CDS |
| GATCCAACACTAGTTTCATA+AGG | 0.505076 | 7.3:-15531445 | None:intergenic |
| ATCTGGCGAATCTCAAGTCT+CGG | 0.506199 | 7.3:+15530943 | MS.gene054881:CDS |
| CAACATGTCAAGATAATGCT+TGG | 0.509028 | 7.3:-15531598 | None:intergenic |
| AAGTCAAATTCTAAATAAGA+TGG | 0.510524 | 7.3:-15531819 | None:intergenic |
| GGCGAATCTCAAGTCTCGGT+TGG | 0.515282 | 7.3:+15530947 | MS.gene054881:CDS |
| CATAATATAATTATTGATTG+TGG | 0.515654 | 7.3:+15531628 | MS.gene054881:CDS |
| TCTCGCACGGTCCTTCCTGA+AGG | 0.518419 | 7.3:-15531730 | None:intergenic |
| TGGCCAGTCGACGGTTTCAC+AGG | 0.522158 | 7.3:+15530985 | MS.gene054881:CDS |
| CGGTTTCACAGGTGACTTGG+AGG | 0.522564 | 7.3:+15530996 | MS.gene054881:CDS |
| CTGTTCAAACCTCAGATGAT+TGG | 0.525541 | 7.3:+15531173 | MS.gene054881:CDS |
| CTCATATCAAGACCTCCATC+AGG | 0.527080 | 7.3:+15530851 | MS.gene054881:CDS |
| TGCAAGACTACTTGCAGTGA+GGG | 0.530387 | 7.3:+15531504 | MS.gene054881:CDS |
| GGGCACTTTCACTGTTGAAA+GGG | 0.530458 | 7.3:+15531524 | MS.gene054881:CDS |
| TCAGGACTTATCAACATTGA+AGG | 0.531009 | 7.3:+15530869 | MS.gene054881:CDS |
| GTGATAAGAGAATATGTAGT+TGG | 0.536303 | 7.3:+15531385 | MS.gene054881:CDS |
| GTCTCCACATAACCTTACTA+AGG | 0.538553 | 7.3:-15531558 | None:intergenic |
| TCACCTGTGAAACCGTCGAC+TGG | 0.539753 | 7.3:-15530988 | None:intergenic |
| AGGGCACTTTCACTGTTGAA+AGG | 0.541370 | 7.3:+15531523 | MS.gene054881:CDS |
| ACATGTCGTGATGACACTTC+CGG | 0.548584 | 7.3:+15531150 | MS.gene054881:CDS |
| TATGGTTTGCCTAATTGCTG+TGG | 0.550020 | 7.3:+15531112 | MS.gene054881:CDS |
| AACCAATGAAGTTGATTGGT+GGG | 0.551092 | 7.3:+15530251 | MS.gene054881:CDS |
| AAATCCTTAGTAAGGTTATG+TGG | 0.551795 | 7.3:+15531554 | MS.gene054881:CDS |
| GCCTGATTCCGATAGAATGC+AGG | 0.554122 | 7.3:+15531063 | MS.gene054881:CDS |
| ACGCCTTATGAAACTAGTGT+TGG | 0.566953 | 7.3:+15531442 | MS.gene054881:CDS |
| ATACATATGTTCTCTTGTGA+GGG | 0.574807 | 7.3:+15530823 | MS.gene054881:CDS |
| GAGGTTTGTTGAGGCGCTTG+AGG | 0.580047 | 7.3:+15531015 | MS.gene054881:CDS |
| GGTGACTTGGAGGTTTGTTG+AGG | 0.580262 | 7.3:+15531006 | MS.gene054881:CDS |
| CATATGTTCTCTTGTGAGGG+AGG | 0.581427 | 7.3:+15530826 | MS.gene054881:CDS |
| AAACCAATGAAGTTGATTGG+TGG | 0.581459 | 7.3:+15530250 | MS.gene054881:CDS |
| GACTTATCAACATTGAAGGA+AGG | 0.586003 | 7.3:+15530873 | MS.gene054881:CDS |
| GGAAATGTTAGAAATTTAGG+TGG | 0.586192 | 7.3:+15531358 | MS.gene054881:CDS |
| ATATTGTGACAGGTTTGCCT+GGG | 0.589924 | 7.3:+15531263 | MS.gene054881:CDS |
| TCAATGTTGATAAGTCCTGA+TGG | 0.594934 | 7.3:-15530866 | None:intergenic |
| GTCATAAGCCATGGAAGAAG+AGG | 0.595419 | 7.3:-15531421 | None:intergenic |
| TTGATCACACCAATCATCTG+AGG | 0.598185 | 7.3:-15531182 | None:intergenic |
| TAAGAGAATATGTAGTTGGT+GGG | 0.609887 | 7.3:+15531389 | MS.gene054881:CDS |
| TCATAAGGCGTCATAAGCCA+TGG | 0.610829 | 7.3:-15531430 | None:intergenic |
| GTACCTAATGATGAGTCACA+AGG | 0.636305 | 7.3:+15530761 | MS.gene054881:CDS |
| TTTCAAGCTCTCACAAAACG+GGG | 0.644673 | 7.3:+15531324 | MS.gene054881:CDS |
| TGGGTTCAACAGGAACAACA+AGG | 0.649619 | 7.3:-15530227 | None:intergenic |
| ATAAGAGAATATGTAGTTGG+TGG | 0.654010 | 7.3:+15531388 | MS.gene054881:CDS |
| TTGGCCAAGCATATACAACA+TGG | 0.657249 | 7.3:+15531757 | MS.gene054881:CDS |
| GGAATGCAATTAGATGCTCA+TGG | 0.658512 | 7.3:+15531778 | MS.gene054881:CDS |
| ATTCTAAATAAGATGGACAG+AGG | 0.659752 | 7.3:-15531812 | None:intergenic |
| TGGAGACACCTTAAATCCAG+AGG | 0.660988 | 7.3:+15531648 | MS.gene054881:CDS |
| AGCAAGTTGATCCTTCAGGA+AGG | 0.663505 | 7.3:+15531719 | MS.gene054881:CDS |
| TACCTAATGATGAGTCACAA+GGG | 0.675869 | 7.3:+15530762 | MS.gene054881:CDS |
| CTGCAAGACTACTTGCAGTG+AGG | 0.676253 | 7.3:+15531503 | MS.gene054881:CDS |
| TATTGTGACAGGTTTGCCTG+GGG | 0.690512 | 7.3:+15531264 | MS.gene054881:CDS |
| ATGTTGATAAGTCCTGATGG+AGG | 0.717185 | 7.3:-15530863 | None:intergenic |
| ATTGTGACAGGTTTGCCTGG+GGG | 0.725993 | 7.3:+15531265 | MS.gene054881:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACTCATTAATTAATTTT+TGG | + | chr7.3:15530683-15530702 | MS.gene054881:intron | 10.0% |
| !! | AGATGATAATATAATACAAA+GGG | - | chr7.3:15530400-15530419 | None:intergenic | 15.0% |
| !!! | CATAATATAATTATTGATTG+TGG | + | chr7.3:15531628-15531647 | MS.gene054881:CDS | 15.0% |
| !! | AACAAAGATTGAAAATTTGA+AGG | - | chr7.3:15530348-15530367 | None:intergenic | 20.0% |
| !! | AAGAAAATCCATATATTGAA+TGG | - | chr7.3:15530440-15530459 | None:intergenic | 20.0% |
| !! | AATGGAAATGTTAGAAATTT+AGG | + | chr7.3:15531355-15531374 | MS.gene054881:CDS | 20.0% |
| !! | ACAAAGATTGAAAATTTGAA+GGG | - | chr7.3:15530347-15530366 | None:intergenic | 20.0% |
| !! | GAGATGATAATATAATACAA+AGG | - | chr7.3:15530401-15530420 | None:intergenic | 20.0% |
| !!! | CATTAATTAATTTTTGGAGA+CGG | + | chr7.3:15530689-15530708 | MS.gene054881:intron | 20.0% |
| ! | ATAAATGCCAGAGATTAAAT+TGG | + | chr7.3:15530626-15530645 | MS.gene054881:intron | 25.0% |
| ! | ATGTCATTCCATTCAATATA+TGG | + | chr7.3:15530429-15530448 | MS.gene054881:intron | 25.0% |
| ! | ATTGAAAATTTGAAGGGAAA+TGG | - | chr7.3:15530341-15530360 | None:intergenic | 25.0% |
| ! | TAATCTCTGGCATTTATATA+TGG | - | chr7.3:15530623-15530642 | None:intergenic | 25.0% |
| !! | TTTTTGTCGAAGTCTAAATT+GGG | - | chr7.3:15530543-15530562 | None:intergenic | 25.0% |
| !!! | TTGTTTCTGACATTTTCATT+AGG | + | chr7.3:15530576-15530595 | MS.gene054881:intron | 25.0% |
| !!! | TTTTTTGTCGAAGTCTAAAT+TGG | - | chr7.3:15530544-15530563 | None:intergenic | 25.0% |
| AAATCCTTAGTAAGGTTATG+TGG | + | chr7.3:15531554-15531573 | MS.gene054881:CDS | 30.0% | |
| AAGGGTTTAAGTACTTCTTT+AGG | + | chr7.3:15530780-15530799 | MS.gene054881:CDS | 30.0% | |
| AATACATATGTTCTCTTGTG+AGG | + | chr7.3:15530822-15530841 | MS.gene054881:CDS | 30.0% | |
| AATTACAGCATGTTGTTACA+AGG | + | chr7.3:15531211-15531230 | MS.gene054881:CDS | 30.0% | |
| AGATTCATTGATATTGTGAC+AGG | + | chr7.3:15531253-15531272 | MS.gene054881:CDS | 30.0% | |
| AGGGTTTAAGTACTTCTTTA+GGG | + | chr7.3:15530781-15530800 | MS.gene054881:CDS | 30.0% | |
| ATAAGAGAATATGTAGTTGG+TGG | + | chr7.3:15531388-15531407 | MS.gene054881:CDS | 30.0% | |
| ATACATATGTTCTCTTGTGA+GGG | + | chr7.3:15530823-15530842 | MS.gene054881:CDS | 30.0% | |
| ATCAATGCCCTTTAATAATG+AGG | - | chr7.3:15530469-15530488 | None:intergenic | 30.0% | |
| ATTGTTGCAAAAATGTACAC+AGG | + | chr7.3:15530731-15530750 | MS.gene054881:intron | 30.0% | |
| CTTAATTTCCTGCATTCTAT+CGG | - | chr7.3:15531074-15531093 | None:intergenic | 30.0% | |
| GGAAATGTTAGAAATTTAGG+TGG | + | chr7.3:15531358-15531377 | MS.gene054881:CDS | 30.0% | |
| GTGATAAGAGAATATGTAGT+TGG | + | chr7.3:15531385-15531404 | MS.gene054881:CDS | 30.0% | |
| TAAGAGAATATGTAGTTGGT+GGG | + | chr7.3:15531389-15531408 | MS.gene054881:CDS | 30.0% | |
| TACCACACCTCATTATTAAA+GGG | + | chr7.3:15530459-15530478 | MS.gene054881:intron | 30.0% | |
| TTACCACACCTCATTATTAA+AGG | + | chr7.3:15530458-15530477 | MS.gene054881:intron | 30.0% | |
| TTCGTGTTTGTGATTAAAAG+TGG | - | chr7.3:15531482-15531501 | None:intergenic | 30.0% | |
| ! | CACTTGTTTGTGTTTCTTTT+TGG | - | chr7.3:15530205-15530224 | None:intergenic | 30.0% |
| ! | CTTGGCAATTTCTTTTTATC+AGG | - | chr7.3:15531583-15531602 | None:intergenic | 30.0% |
| !! | TTCATTCTAGAACAACAACA+TGG | - | chr7.3:15530376-15530395 | None:intergenic | 30.0% |
| !! | TTCTTTTTGGTCTTCTTCTT+TGG | - | chr7.3:15530192-15530211 | None:intergenic | 30.0% |
| !!! | CAATCAACTTCATTGGTTTT+GGG | - | chr7.3:15530249-15530268 | None:intergenic | 30.0% |
| !!! | TTTTTCAAGCTCTCACAAAA+CGG | + | chr7.3:15531322-15531341 | MS.gene054881:CDS | 30.0% |
| AAAAGAGAAGAAACCAAACC+TGG | - | chr7.3:15530306-15530325 | None:intergenic | 35.0% | |
| AAAGAGAAGAAACCAAACCT+GGG | - | chr7.3:15530305-15530324 | None:intergenic | 35.0% | |
| AGAATGCAGGAAATTAAGTC+TGG | + | chr7.3:15531076-15531095 | MS.gene054881:CDS | 35.0% | |
| CAACATGTCAAGATAATGCT+TGG | - | chr7.3:15531601-15531620 | None:intergenic | 35.0% | |
| CATTCCATGTTGTATATGCT+TGG | - | chr7.3:15531764-15531783 | None:intergenic | 35.0% | |
| GACTTATCAACATTGAAGGA+AGG | + | chr7.3:15530873-15530892 | MS.gene054881:CDS | 35.0% | |
| GAGTTGGAAAATCCTTAGTA+AGG | + | chr7.3:15531546-15531565 | MS.gene054881:CDS | 35.0% | |
| TACCTAATGATGAGTCACAA+GGG | + | chr7.3:15530762-15530781 | MS.gene054881:CDS | 35.0% | |
| TCAGGACTTATCAACATTGA+AGG | + | chr7.3:15530869-15530888 | MS.gene054881:CDS | 35.0% | |
| TTGTCTGATCATCATGATTC+AGG | + | chr7.3:15531676-15531695 | MS.gene054881:CDS | 35.0% | |
| ! | AAACCAATGAAGTTGATTGG+TGG | + | chr7.3:15530250-15530269 | MS.gene054881:CDS | 35.0% |
| ! | AAAGACCCATGATTTTCTCA+CGG | + | chr7.3:15530517-15530536 | MS.gene054881:intron | 35.0% |
| ! | AACCAATGAAGTTGATTGGT+GGG | + | chr7.3:15530251-15530270 | MS.gene054881:CDS | 35.0% |
| ! | AAGTTGCTATTGCTCTTAGA+AGG | + | chr7.3:15530915-15530934 | MS.gene054881:CDS | 35.0% |
| ! | CCAAAACCAATGAAGTTGAT+TGG | + | chr7.3:15530247-15530266 | MS.gene054881:CDS | 35.0% |
| ! | GATCCAACACTAGTTTCATA+AGG | - | chr7.3:15531448-15531467 | None:intergenic | 35.0% |
| ! | TCAATGTTGATAAGTCCTGA+TGG | - | chr7.3:15530869-15530888 | None:intergenic | 35.0% |
| ! | TCTTCTTCTTTGGTTTCTTC+TGG | - | chr7.3:15530182-15530201 | None:intergenic | 35.0% |
| ! | TTCTTTGGTTTCTTCTGGAT+GGG | - | chr7.3:15530177-15530196 | None:intergenic | 35.0% |
| !! | TTTTCAAGCTCTCACAAAAC+GGG | + | chr7.3:15531323-15531342 | MS.gene054881:CDS | 35.0% |
| !!! | CCAATCAACTTCATTGGTTT+TGG | - | chr7.3:15530250-15530269 | None:intergenic | 35.0% |
| AACCCTTGTGACTCATCATT+AGG | - | chr7.3:15530767-15530786 | None:intergenic | 40.0% | |
| AAGAGAAGAAACCAAACCTG+GGG | - | chr7.3:15530304-15530323 | None:intergenic | 40.0% | |
| ACAGTTATCCTCTTCTTCCA+TGG | + | chr7.3:15531413-15531432 | MS.gene054881:CDS | 40.0% | |
| ACGCCTTATGAAACTAGTGT+TGG | + | chr7.3:15531442-15531461 | MS.gene054881:CDS | 40.0% | |
| ATATTGTGACAGGTTTGCCT+GGG | + | chr7.3:15531263-15531282 | MS.gene054881:CDS | 40.0% | |
| CAATGCAACCTCTGGATTTA+AGG | - | chr7.3:15531659-15531678 | None:intergenic | 40.0% | |
| CTGTTCAAACCTCAGATGAT+TGG | + | chr7.3:15531173-15531192 | MS.gene054881:CDS | 40.0% | |
| CTTGCTTGCAATACTGTTCT+CGG | - | chr7.3:15531705-15531724 | None:intergenic | 40.0% | |
| GGAATGCAATTAGATGCTCA+TGG | + | chr7.3:15531778-15531797 | MS.gene054881:CDS | 40.0% | |
| GTACCTAATGATGAGTCACA+AGG | + | chr7.3:15530761-15530780 | MS.gene054881:CDS | 40.0% | |
| GTCTCCACATAACCTTACTA+AGG | - | chr7.3:15531561-15531580 | None:intergenic | 40.0% | |
| TCAATAGCTCCACAGCAATT+AGG | - | chr7.3:15531124-15531143 | None:intergenic | 40.0% | |
| TCGTGGTCCAATTTAATCTC+TGG | - | chr7.3:15530636-15530655 | None:intergenic | 40.0% | |
| TGCCCTTTAATAATGAGGTG+TGG | - | chr7.3:15530464-15530483 | None:intergenic | 40.0% | |
| TGCTATTGCTCTTAGAAGGT+TGG | + | chr7.3:15530919-15530938 | MS.gene054881:CDS | 40.0% | |
| TTCCCACCAATCAACTTCAT+TGG | - | chr7.3:15530256-15530275 | None:intergenic | 40.0% | |
| TTGATCACACCAATCATCTG+AGG | - | chr7.3:15531185-15531204 | None:intergenic | 40.0% | |
| TTGATTGGTGGGAATCTTTC+TGG | + | chr7.3:15530262-15530281 | MS.gene054881:CDS | 40.0% | |
| TTGGCCAAGCATATACAACA+TGG | + | chr7.3:15531757-15531776 | MS.gene054881:CDS | 40.0% | |
| TTTCAAGCTCTCACAAAACG+GGG | + | chr7.3:15531324-15531343 | MS.gene054881:CDS | 40.0% | |
| TTTCACTGTTGAAAGGGAGT+TGG | + | chr7.3:15531530-15531549 | MS.gene054881:CDS | 40.0% | |
| ! | ATGTTGATAAGTCCTGATGG+AGG | - | chr7.3:15530866-15530885 | None:intergenic | 40.0% |
| ! | CTTCTTTGGTTTCTTCTGGA+TGG | - | chr7.3:15530178-15530197 | None:intergenic | 40.0% |
| ! | TATGGTTTGCCTAATTGCTG+TGG | + | chr7.3:15531112-15531131 | MS.gene054881:CDS | 40.0% |
| !! | TGGAGACGGTGTTATTGATA+TGG | + | chr7.3:15530703-15530722 | MS.gene054881:intron | 40.0% |
| !!! | TCATTGGTTTTGGGTTCAAC+AGG | - | chr7.3:15530240-15530259 | None:intergenic | 40.0% |
| !!! | TCTGGTTTTGAAGCGTTGTA+TGG | + | chr7.3:15531094-15531113 | MS.gene054881:CDS | 40.0% |
| AAATTCTACTGCCCCAGGTT+TGG | + | chr7.3:15530290-15530309 | MS.gene054881:intron | 45.0% | |
| AAGGACCGTGCGAGAAAATT+TGG | + | chr7.3:15531738-15531757 | MS.gene054881:CDS | 45.0% | |
| ACATGTCGTGATGACACTTC+CGG | + | chr7.3:15531150-15531169 | MS.gene054881:CDS | 45.0% | |
| ATCTGGCGAATCTCAAGTCT+CGG | + | chr7.3:15530943-15530962 | MS.gene054881:CDS | 45.0% | |
| ATTGGGCCGTGAGAAAATCA+TGG | - | chr7.3:15530526-15530545 | None:intergenic | 45.0% | |
| CACAAAAATTCTACTGCCCC+AGG | + | chr7.3:15530285-15530304 | MS.gene054881:CDS | 45.0% | |
| CATATGTTCTCTTGTGAGGG+AGG | + | chr7.3:15530826-15530845 | MS.gene054881:CDS | 45.0% | |
| CTCATATCAAGACCTCCATC+AGG | + | chr7.3:15530851-15530870 | MS.gene054881:CDS | 45.0% | |
| GATATTGTGACAGGTTTGCC+TGG | + | chr7.3:15531262-15531281 | MS.gene054881:CDS | 45.0% | |
| GCGCTAAACGTCATCTGAAT+TGG | + | chr7.3:15531041-15531060 | MS.gene054881:CDS | 45.0% | |
| GGACCACGAGAAAATTGTGA+GGG | + | chr7.3:15530647-15530666 | MS.gene054881:intron | 45.0% | |
| GGGCACTTTCACTGTTGAAA+GGG | + | chr7.3:15531524-15531543 | MS.gene054881:CDS | 45.0% | |
| GTCATAAGCCATGGAAGAAG+AGG | - | chr7.3:15531424-15531443 | None:intergenic | 45.0% | |
| TATTGTGACAGGTTTGCCTG+GGG | + | chr7.3:15531264-15531283 | MS.gene054881:CDS | 45.0% | |
| TCCTGCATTCTATCGGAATC+AGG | - | chr7.3:15531067-15531086 | None:intergenic | 45.0% | |
| TGATCAGACAATGCAACCTC+TGG | - | chr7.3:15531667-15531686 | None:intergenic | 45.0% | |
| TGCAAGACTACTTGCAGTGA+GGG | + | chr7.3:15531504-15531523 | MS.gene054881:CDS | 45.0% | |
| TGGACCACGAGAAAATTGTG+AGG | + | chr7.3:15530646-15530665 | MS.gene054881:intron | 45.0% | |
| TGGAGACACCTTAAATCCAG+AGG | + | chr7.3:15531648-15531667 | MS.gene054881:CDS | 45.0% | |
| TGGGTTCAACAGGAACAACA+AGG | - | chr7.3:15530230-15530249 | None:intergenic | 45.0% | |
| TTGGGCCGTGAGAAAATCAT+GGG | - | chr7.3:15530525-15530544 | None:intergenic | 45.0% | |
| ! | AGGGCACTTTCACTGTTGAA+AGG | + | chr7.3:15531523-15531542 | MS.gene054881:CDS | 45.0% |
| ! | AGTCCCTCACAATTTTCTCG+TGG | - | chr7.3:15530653-15530672 | None:intergenic | 45.0% |
| ! | CTTGGCCAAATTTTCTCGCA+CGG | - | chr7.3:15531746-15531765 | None:intergenic | 45.0% |
| ! | TCATAAGGCGTCATAAGCCA+TGG | - | chr7.3:15531433-15531452 | None:intergenic | 45.0% |
| ! | TCATCTGAGGTTTGAACAGC+CGG | - | chr7.3:15531172-15531191 | None:intergenic | 45.0% |
| !! | AGCAAGTTGATCCTTCAGGA+AGG | + | chr7.3:15531719-15531738 | MS.gene054881:CDS | 45.0% |
| !! | GTTGGAGCTTCTTTTGGTGT+TGG | + | chr7.3:15530965-15530984 | MS.gene054881:CDS | 45.0% |
| !! | TGCAAGCAAGTTGATCCTTC+AGG | + | chr7.3:15531715-15531734 | MS.gene054881:CDS | 45.0% |
| ATTGTGACAGGTTTGCCTGG+GGG | + | chr7.3:15531265-15531284 | MS.gene054881:CDS | 50.0% | |
| CGTGAAAATGTCATTCCCCC+AGG | - | chr7.3:15531283-15531302 | None:intergenic | 50.0% | |
| CTGCAAGACTACTTGCAGTG+AGG | + | chr7.3:15531503-15531522 | MS.gene054881:CDS | 50.0% | |
| GCCTGATTCCGATAGAATGC+AGG | + | chr7.3:15531063-15531082 | MS.gene054881:CDS | 50.0% | |
| GCTCTTAGAAGGTTGGCATC+TGG | + | chr7.3:15530926-15530945 | MS.gene054881:CDS | 50.0% | |
| ! | GTCTCGGTTGGAGCTTCTTT+TGG | + | chr7.3:15530959-15530978 | MS.gene054881:CDS | 50.0% |
| !! | CAAAACGGGGAGCGTTTGAA+TGG | + | chr7.3:15531337-15531356 | MS.gene054881:CDS | 50.0% |
| !! | GGTGACTTGGAGGTTTGTTG+AGG | + | chr7.3:15531006-15531025 | MS.gene054881:CDS | 50.0% |
| !!! | TTTTGGTGTTGGCCAGTCGA+CGG | + | chr7.3:15530976-15530995 | MS.gene054881:CDS | 50.0% |
| CGACGGTTTCACAGGTGACT+TGG | + | chr7.3:15530993-15531012 | MS.gene054881:CDS | 55.0% | |
| GGCGAATCTCAAGTCTCGGT+TGG | + | chr7.3:15530947-15530966 | MS.gene054881:CDS | 55.0% | |
| TCACCTGTGAAACCGTCGAC+TGG | - | chr7.3:15530991-15531010 | None:intergenic | 55.0% | |
| ! | CGGTTTCACAGGTGACTTGG+AGG | + | chr7.3:15530996-15531015 | MS.gene054881:CDS | 55.0% |
| !! | GAGGTTTGTTGAGGCGCTTG+AGG | + | chr7.3:15531015-15531034 | MS.gene054881:CDS | 55.0% |
| TCTCGCACGGTCCTTCCTGA+AGG | - | chr7.3:15531733-15531752 | None:intergenic | 60.0% | |
| TGGCCAGTCGACGGTTTCAC+AGG | + | chr7.3:15530985-15531004 | MS.gene054881:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 15530168 | 15531831 | 15530168 | ID=MS.gene054881 |
| chr7.3 | mRNA | 15530168 | 15531831 | 15530168 | ID=MS.gene054881.t1;Parent=MS.gene054881 |
| chr7.3 | exon | 15530168 | 15530306 | 15530168 | ID=MS.gene054881.t1.exon1;Parent=MS.gene054881.t1 |
| chr7.3 | CDS | 15530168 | 15530306 | 15530168 | ID=cds.MS.gene054881.t1;Parent=MS.gene054881.t1 |
| chr7.3 | exon | 15530753 | 15531831 | 15530753 | ID=MS.gene054881.t1.exon2;Parent=MS.gene054881.t1 |
| chr7.3 | CDS | 15530753 | 15531831 | 15530753 | ID=cds.MS.gene054881.t1;Parent=MS.gene054881.t1 |
| Gene Sequence |
| Protein sequence |
