Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055637.t1 | XP_013456177.1 | 89.1 | 457 | 17 | 2 | 1 | 439 | 29 | 470 | 4.00E-231 | 810.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055637.t1 | Q9FIL1 | 74.2 | 449 | 83 | 2 | 9 | 439 | 32 | 465 | 5.3e-192 | 671.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055637.t1 | A0A072UM96 | 89.1 | 457 | 17 | 2 | 1 | 439 | 29 | 470 | 2.9e-231 | 810.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055637 | MS.gene055640 | 0.80555 | 1.26E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 93 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAACTGTAAATTACACTTTC+AGG | 0.172555 | 4.1:+35724954 | None:intergenic |
GACTGCAATACATGAAATTT+TGG | 0.173851 | 4.1:-35724210 | MS.gene055637:CDS |
CAGCCTCATTGCCCATTTCA+TGG | 0.271083 | 4.1:+35725637 | None:intergenic |
GTCCGAAACAAGAGAGTTTA+GGG | 0.304019 | 4.1:+35725433 | None:intergenic |
AGTCCGAAACAAGAGAGTTT+AGG | 0.314053 | 4.1:+35725432 | None:intergenic |
GAAAGTGTAATTTACAGTTT+TGG | 0.336551 | 4.1:-35724951 | MS.gene055637:CDS |
ACTTAAAAGATCAAGCAATA+AGG | 0.359145 | 4.1:+35724926 | None:intergenic |
AACCCTAAACTCTCTTGTTT+CGG | 0.373178 | 4.1:-35725435 | MS.gene055637:CDS |
GTCACAAGGGACTTGGCATT+TGG | 0.381020 | 4.1:+35724495 | None:intergenic |
CAACCTCTGTAGACAACATT+AGG | 0.382645 | 4.1:+35726618 | None:intergenic |
ACTGTTACGTTAACGCCTTT+TGG | 0.388030 | 4.1:-35724257 | MS.gene055637:CDS |
GAAAGATTAGCTAACTTGAT+TGG | 0.396345 | 4.1:-35726315 | MS.gene055637:CDS |
TTTGATGATAGACTCCTATC+TGG | 0.400123 | 4.1:+35724284 | None:intergenic |
ATGTTTAGATAGAGTTTCAT+TGG | 0.402349 | 4.1:+35726245 | None:intergenic |
GGGATGTCCAACCCATGAAA+TGG | 0.410763 | 4.1:-35725649 | MS.gene055637:CDS |
AATGTTGATGGACTCATGTT+TGG | 0.411101 | 4.1:-35724598 | MS.gene055637:CDS |
AACTGTAAATTACACTTTCA+GGG | 0.422736 | 4.1:+35724955 | None:intergenic |
AGCCTCATTGCCCATTTCAT+GGG | 0.434426 | 4.1:+35725638 | None:intergenic |
GAAGACAAGAAATGAGATTG+AGG | 0.437057 | 4.1:+35724871 | None:intergenic |
AAACAGAAGGATTCTTCTGT+TGG | 0.443144 | 4.1:-35726729 | MS.gene055637:CDS |
CTTGAACAAGCTTCACCAAA+AGG | 0.447181 | 4.1:+35724242 | None:intergenic |
CACGAGCGGTAGGGGAGCTA+AGG | 0.456413 | 4.1:-35726341 | MS.gene055637:CDS |
GAGAGCAGTCACAAGGGACT+TGG | 0.458877 | 4.1:+35724488 | None:intergenic |
TCATTGCCCATTTCATGGGT+TGG | 0.460747 | 4.1:+35725642 | None:intergenic |
TTGATTGGTTGTTGCTCTGA+TGG | 0.467737 | 4.1:-35726300 | MS.gene055637:CDS |
TTCTATAAGCATTAAGATCA+TGG | 0.471050 | 4.1:+35725552 | None:intergenic |
CTGAAGTTTCTTTCTGAAGA+GGG | 0.472348 | 4.1:+35724463 | None:intergenic |
GGAGGAAGCACGAGCGGTAG+GGG | 0.473880 | 4.1:-35726349 | MS.gene055637:CDS |
TGTCTCTGAACATGGTGAAA+AGG | 0.479451 | 4.1:-35726643 | MS.gene055637:CDS |
TCATTATCCATGGCCAAGGC+TGG | 0.480776 | 4.1:+35723123 | None:intergenic |
GGGTTACTTGCAGATGATGA+TGG | 0.481642 | 4.1:-35726759 | None:intergenic |
TTCGTGTAGTTTATCGATGG+TGG | 0.487800 | 4.1:-35723295 | MS.gene055637:intron |
TGTTTAGATAGAGTTTCATT+GGG | 0.492154 | 4.1:+35726246 | None:intergenic |
GGATGTCCAACCCATGAAAT+GGG | 0.492426 | 4.1:-35725648 | MS.gene055637:CDS |
TCTGCTATTGCAGTATTCCA+AGG | 0.495187 | 4.1:+35725589 | None:intergenic |
GAGGTTGTCTTGAAGATGAT+AGG | 0.506148 | 4.1:-35726602 | MS.gene055637:CDS |
TTTGGAGAAGGTGGGCTACA+AGG | 0.509732 | 4.1:-35724192 | MS.gene055637:CDS |
TTTGTATTTAGCACAAGCCT+TGG | 0.510847 | 4.1:-35725606 | MS.gene055637:CDS |
AAGACAAGAAATGAGATTGA+GGG | 0.517557 | 4.1:+35724872 | None:intergenic |
TTGATTTGTCCACATTTGAA+AGG | 0.518057 | 4.1:+35723480 | None:intergenic |
TTCTTGTGCATCATTATCCA+TGG | 0.519667 | 4.1:+35723113 | None:intergenic |
AGGAGGAAGCACGAGCGGTA+GGG | 0.520080 | 4.1:-35726350 | MS.gene055637:CDS |
GCAGTTGCACTCTCCAGCCT+TGG | 0.524589 | 4.1:-35723136 | MS.gene055637:CDS |
CTCAGTCGATAGCTCCCACT+TGG | 0.527618 | 4.1:-35723180 | MS.gene055637:CDS |
TCGTGTAGTTTATCGATGGT+GGG | 0.533739 | 4.1:-35723294 | MS.gene055637:intron |
TAGGAGGAAGCACGAGCGGT+AGG | 0.537110 | 4.1:-35726351 | MS.gene055637:CDS |
CTACCTGTCCTCAAGTACTC+TGG | 0.541089 | 4.1:+35725354 | None:intergenic |
CGTTTCGTGTAGTTTATCGA+TGG | 0.545177 | 4.1:-35723298 | MS.gene055637:intron |
TGAAATGGGCAATGAGGCTG+AGG | 0.550446 | 4.1:-35725634 | MS.gene055637:CDS |
CGTAGCTATCCTTTCAAATG+TGG | 0.559282 | 4.1:-35723489 | MS.gene055637:intron |
CAAGTACTCTGGAGGAGTGA+AGG | 0.560026 | 4.1:+35725365 | None:intergenic |
TGCATCATTATCCATGGCCA+AGG | 0.567840 | 4.1:+35723119 | None:intergenic |
GCACTCTCCAGCCTTGGCCA+TGG | 0.569281 | 4.1:-35723130 | MS.gene055637:CDS |
ATGATAGACTCCTATCTGGT+AGG | 0.569495 | 4.1:+35724288 | None:intergenic |
TGTCATTCATCATGTAGCAC+AGG | 0.570657 | 4.1:+35723236 | None:intergenic |
TACTTGGGTATAGCAGTCAA+TGG | 0.570960 | 4.1:+35723390 | None:intergenic |
ACTGAAGTTTCTTTCTGAAG+AGG | 0.576723 | 4.1:+35724462 | None:intergenic |
TAGAATGCAGTTGGCCAAGT+GGG | 0.577292 | 4.1:+35723166 | None:intergenic |
CCTCCAGAGTACTTGAGGAC+AGG | 0.577676 | 4.1:-35725357 | MS.gene055637:intron |
CAGCGCCTAGCATACACAGT+TGG | 0.580414 | 4.1:+35723259 | None:intergenic |
TTGAGGGAGCATACATGACT+TGG | 0.583178 | 4.1:+35724888 | None:intergenic |
GACAACATTGTCTCTGAACA+TGG | 0.584203 | 4.1:-35726651 | MS.gene055637:CDS |
GAGGGGTGAGAGCAGTCACA+AGG | 0.585429 | 4.1:+35724481 | None:intergenic |
TGATGAACATGTTGCGAATG+AGG | 0.585937 | 4.1:-35724168 | MS.gene055637:intron |
ACTGTAAATTACACTTTCAG+GGG | 0.587043 | 4.1:+35724956 | None:intergenic |
TGAAGTTTCTTTCTGAAGAG+GGG | 0.589944 | 4.1:+35724464 | None:intergenic |
TTGGCATTTGGTCTCTCACG+AGG | 0.590335 | 4.1:+35724507 | None:intergenic |
GGTTACTTGCAGATGATGAT+GGG | 0.593609 | 4.1:-35726758 | None:intergenic |
GCTTGAAGATAGAATGCAGT+TGG | 0.594846 | 4.1:+35723157 | None:intergenic |
AGGGAGCATACATGACTTGG+TGG | 0.596273 | 4.1:+35724891 | None:intergenic |
TCACTCCTCCAGAGTACTTG+AGG | 0.598695 | 4.1:-35725362 | MS.gene055637:CDS |
TATCGCCAACTGTGTATGCT+AGG | 0.598908 | 4.1:-35723264 | MS.gene055637:CDS |
AATACTGCAATAGCAGAGGA+AGG | 0.599735 | 4.1:-35725583 | MS.gene055637:CDS |
CAACTAAGAGTTGCTACAGA+AGG | 0.600367 | 4.1:-35726684 | MS.gene055637:CDS |
GACATGGCACAAGAAGCGCT+TGG | 0.604857 | 4.1:-35723217 | MS.gene055637:CDS |
TCACGCGAAAGACTTCTCTA+CGG | 0.607363 | 4.1:-35723413 | MS.gene055637:CDS |
AACCCATGAAATGGGCAATG+AGG | 0.620224 | 4.1:-35725640 | MS.gene055637:CDS |
TTGTCTTGAAGATGATAGGT+TGG | 0.623491 | 4.1:-35726598 | MS.gene055637:intron |
TGATGGGAGCAAGAAACAGA+AGG | 0.625275 | 4.1:-35726742 | MS.gene055637:CDS |
GTTTATCGATGGTGGGACCA+TGG | 0.631682 | 4.1:-35723287 | MS.gene055637:CDS |
AGGGGTGAGAGCAGTCACAA+GGG | 0.633980 | 4.1:+35724482 | None:intergenic |
TTGATGGACTCATGTTTGGA+AGG | 0.634922 | 4.1:-35724594 | MS.gene055637:CDS |
GCTCCTAATGTTGTCTACAG+AGG | 0.642567 | 4.1:-35726621 | MS.gene055637:CDS |
ACACTAAATTTCAAGAAGCG+TGG | 0.648680 | 4.1:-35723448 | MS.gene055637:CDS |
AGGCACTTGACCTTATACGA+TGG | 0.651170 | 4.1:-35724633 | MS.gene055637:CDS |
ATACTGCAATAGCAGAGGAA+GGG | 0.652155 | 4.1:-35725582 | MS.gene055637:CDS |
TTGGAATACTGCAATAGCAG+AGG | 0.657623 | 4.1:-35725587 | MS.gene055637:CDS |
ATACACAGTTGGCGATACCA+TGG | 0.664369 | 4.1:+35723270 | None:intergenic |
ATGGGCAATGAGGCTGAGGG+TGG | 0.666902 | 4.1:-35725630 | MS.gene055637:CDS |
CCTGTCCTCAAGTACTCTGG+AGG | 0.677652 | 4.1:+35725357 | None:intergenic |
ATAGAATGCAGTTGGCCAAG+TGG | 0.679942 | 4.1:+35723165 | None:intergenic |
GAAATGGGCAATGAGGCTGA+GGG | 0.725313 | 4.1:-35725633 | MS.gene055637:CDS |
GTGCTACATGATGAATGACA+TGG | 0.732997 | 4.1:-35723233 | MS.gene055637:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGATTTTGTAAAATTAATTA+TGG | + | chr4.1:35723988-35724007 | None:intergenic | 10.0% |
!! | AGAAAAAATAAGATAAGAAA+AGG | + | chr4.1:35725784-35725803 | None:intergenic | 15.0% |
!! | ATACAATAAACTTATATGAT+AGG | + | chr4.1:35724595-35724614 | None:intergenic | 15.0% |
!! | TTATAAAACATAATGAAATG+AGG | + | chr4.1:35724390-35724409 | None:intergenic | 15.0% |
!!! | GTCTTTTTTTTTTTTTTTGA+AGG | - | chr4.1:35725042-35725061 | MS.gene055637:intron | 15.0% |
!!! | TTATAGAATTTTATTTGATC+AGG | - | chr4.1:35724335-35724354 | MS.gene055637:intron | 15.0% |
!!! | TTTCATTATGTTTTATAAAC+TGG | - | chr4.1:35724392-35724411 | MS.gene055637:intron | 15.0% |
!!! | TTTTCATAACAAAAGATAAA+CGG | - | chr4.1:35724621-35724640 | MS.gene055637:CDS | 15.0% |
!!! | TTTTTTTTTTTGAAGGAATT+AGG | - | chr4.1:35725049-35725068 | MS.gene055637:intron | 15.0% |
!! | AAAAACGATATCAACAAAAA+TGG | + | chr4.1:35724145-35724164 | None:intergenic | 20.0% |
!! | AAAACGATATCAACAAAAAT+GGG | + | chr4.1:35724144-35724163 | None:intergenic | 20.0% |
!! | ACAAATTAAAACATTTCCTA+TGG | + | chr4.1:35723692-35723711 | None:intergenic | 20.0% |
!! | ATTGAAAAAATCACAATACA+TGG | + | chr4.1:35724848-35724867 | None:intergenic | 20.0% |
!! | TGCTAAAAATTAATAGTCAT+CGG | - | chr4.1:35726059-35726078 | MS.gene055637:intron | 20.0% |
!! | TTAATGTTAACACTAAGAAT+AGG | + | chr4.1:35725968-35725987 | None:intergenic | 20.0% |
!!! | CTTGTCTTCATTTTAATATT+AGG | - | chr4.1:35725015-35725034 | MS.gene055637:intron | 20.0% |
!!! | GTATTGTCATATGTTTTAAT+GGG | - | chr4.1:35725561-35725580 | MS.gene055637:CDS | 20.0% |
!!! | GTTTTATAAACTGGTTTAAA+TGG | - | chr4.1:35724401-35724420 | MS.gene055637:intron | 20.0% |
!!! | TTTATCTAAACTTTTCCTTA+TGG | + | chr4.1:35724728-35724747 | None:intergenic | 20.0% |
! | AAAAAGTAAACTTTCATCCA+TGG | + | chr4.1:35725454-35725473 | None:intergenic | 25.0% |
! | AAACGATATCAACAAAAATG+GGG | + | chr4.1:35724143-35724162 | None:intergenic | 25.0% |
! | AAACTGTAAATTACACTTTC+AGG | + | chr4.1:35724921-35724940 | None:intergenic | 25.0% |
! | AACTGTAAATTACACTTTCA+GGG | + | chr4.1:35724920-35724939 | None:intergenic | 25.0% |
! | ACTTAAAAGATCAAGCAATA+AGG | + | chr4.1:35724949-35724968 | None:intergenic | 25.0% |
! | ATGTTTAGATAGAGTTTCAT+TGG | + | chr4.1:35723630-35723649 | None:intergenic | 25.0% |
! | ATTAAAACATTTCCTATGGT+TGG | + | chr4.1:35723688-35723707 | None:intergenic | 25.0% |
! | CAAAAACTTTCAAATGTTGA+TGG | - | chr4.1:35725262-35725281 | MS.gene055637:intron | 25.0% |
! | CCATATTAGAGTTAAAGTAA+TGG | + | chr4.1:35726259-35726278 | None:intergenic | 25.0% |
! | CCATTACTTTAACTCTAATA+TGG | - | chr4.1:35726256-35726275 | MS.gene055637:CDS | 25.0% |
! | TCCATAAATATGATCATACA+CGG | + | chr4.1:35726343-35726362 | None:intergenic | 25.0% |
! | TGTCTTCAGTTATCTATAAT+CGG | + | chr4.1:35726135-35726154 | None:intergenic | 25.0% |
! | TGTTTAGATAGAGTTTCATT+GGG | + | chr4.1:35723629-35723648 | None:intergenic | 25.0% |
! | TTATTATGAGACTTTCCAAT+TGG | - | chr4.1:35725991-35726010 | MS.gene055637:intron | 25.0% |
! | TTCTATAAGCATTAAGATCA+TGG | + | chr4.1:35724323-35724342 | None:intergenic | 25.0% |
!! | TACGCAAATTTAAAATTGTG+TGG | + | chr4.1:35725809-35725828 | None:intergenic | 25.0% |
!! | TATAAACTGGTTTAAATGGT+TGG | - | chr4.1:35724405-35724424 | MS.gene055637:intron | 25.0% |
!! | TTATTGCTTGATCTTTTAAG+TGG | - | chr4.1:35724948-35724967 | MS.gene055637:CDS | 25.0% |
!!! | AATACATGAAATTTTGGAGA+AGG | - | chr4.1:35725668-35725687 | MS.gene055637:intron | 25.0% |
!!! | GAAAGTGTAATTTACAGTTT+TGG | - | chr4.1:35724921-35724940 | MS.gene055637:CDS | 25.0% |
!!! | GGTATTGTCATATGTTTTAA+TGG | - | chr4.1:35725560-35725579 | MS.gene055637:CDS | 25.0% |
!!! | GTCTTCATTTTAATATTAGG+TGG | - | chr4.1:35725018-35725037 | MS.gene055637:intron | 25.0% |
!!! | TATTTTGTTTATCCAACCAT+AGG | - | chr4.1:35723673-35723692 | MS.gene055637:intron | 25.0% |
!!! | TTTTGTTGGAGTGTTTTTTT+AGG | - | chr4.1:35723502-35723521 | MS.gene055637:intron | 25.0% |
!!! | TTTTTTTTGAAGGAATTAGG+TGG | - | chr4.1:35725052-35725071 | MS.gene055637:intron | 25.0% |
AAAAATGGGGATGAAATTGA+TGG | + | chr4.1:35724130-35724149 | None:intergenic | 30.0% | |
AACAAAGAATCTTCACTCAA+AGG | + | chr4.1:35724816-35724835 | None:intergenic | 30.0% | |
AAGACAAGAAATGAGATTGA+GGG | + | chr4.1:35725003-35725022 | None:intergenic | 30.0% | |
AATCATAACCAAACCATCAT+AGG | + | chr4.1:35725166-35725185 | None:intergenic | 30.0% | |
ACCGTGTATGATCATATTTA+TGG | - | chr4.1:35726339-35726358 | MS.gene055637:CDS | 30.0% | |
ACTAAGCTTAAAACAGCTTA+TGG | - | chr4.1:35724685-35724704 | MS.gene055637:intron | 30.0% | |
ACTGAATCAAAACCATGATA+CGG | + | chr4.1:35726232-35726251 | None:intergenic | 30.0% | |
ACTGTAAATTACACTTTCAG+GGG | + | chr4.1:35724919-35724938 | None:intergenic | 30.0% | |
CAAGTCCATTTCTATACTTT+CGG | + | chr4.1:35725504-35725523 | None:intergenic | 30.0% | |
CGTAGTATACTTATCAAAAC+CGG | - | chr4.1:35726306-35726325 | MS.gene055637:CDS | 30.0% | |
GTTGATATTAAGCTTACAGT+TGG | - | chr4.1:35725525-35725544 | MS.gene055637:intron | 30.0% | |
TAAGTATACTACGGAAGAAA+AGG | + | chr4.1:35726299-35726318 | None:intergenic | 30.0% | |
TCATTTCATTTGCATGTGTT+TGG | - | chr4.1:35723392-35723411 | MS.gene055637:intron | 30.0% | |
TGGATTGATATTGACATGTT+TGG | - | chr4.1:35723761-35723780 | MS.gene055637:intron | 30.0% | |
! | AAACTACTGATTATGTGACT+TGG | - | chr4.1:35724183-35724202 | MS.gene055637:CDS | 30.0% |
! | AAAGTTTTTGCCATCGTATA+AGG | + | chr4.1:35725252-35725271 | None:intergenic | 30.0% |
! | GAAAGATTAGCTAACTTGAT+TGG | - | chr4.1:35723557-35723576 | MS.gene055637:intron | 30.0% |
! | GACTGCAATACATGAAATTT+TGG | - | chr4.1:35725662-35725681 | MS.gene055637:intron | 30.0% |
! | TAACACACCTGTTTGAAATT+TGG | - | chr4.1:35724881-35724900 | MS.gene055637:CDS | 30.0% |
! | TTTGAATGCTGGTACTTTTA+AGG | - | chr4.1:35725103-35725122 | MS.gene055637:intron | 30.0% |
! | TTTTACGACTATGTTTGACA+AGG | - | chr4.1:35724054-35724073 | MS.gene055637:intron | 30.0% |
!! | AAAACTGATTTTAGAGGTGT+TGG | - | chr4.1:35723741-35723760 | MS.gene055637:intron | 30.0% |
!! | ATTTGTTATGCATGACAGTT+TGG | - | chr4.1:35726172-35726191 | MS.gene055637:intron | 30.0% |
!! | CGGTTTTGATAAGTATACTA+CGG | + | chr4.1:35726308-35726327 | None:intergenic | 30.0% |
!! | GAAGCTAGAATTTGAAGTTT+TGG | - | chr4.1:35723832-35723851 | MS.gene055637:intron | 30.0% |
!! | GTAGTCAAAACTGATTTTAG+AGG | - | chr4.1:35723735-35723754 | MS.gene055637:intron | 30.0% |
!! | TAAAAGTACCAGCATTCAAA+TGG | + | chr4.1:35725103-35725122 | None:intergenic | 30.0% |
!! | TGAGTGAAGATTCTTTGTTT+TGG | - | chr4.1:35724817-35724836 | MS.gene055637:intron | 30.0% |
!! | TGTATGTTTAGTTCCACTTT+TGG | - | chr4.1:35723711-35723730 | MS.gene055637:intron | 30.0% |
!! | TTGATTTGTCCACATTTGAA+AGG | + | chr4.1:35726395-35726414 | None:intergenic | 30.0% |
!!! | GGTCATTTTTCAAATGATGA+TGG | - | chr4.1:35725299-35725318 | MS.gene055637:intron | 30.0% |
AAACAGAAGGATTCTTCTGT+TGG | - | chr4.1:35723143-35723162 | MS.gene055637:CDS | 35.0% | |
AACTAGGAATTGACGAGAAT+CGG | + | chr4.1:35723332-35723351 | None:intergenic | 35.0% | |
AAGTAAACTTTCATCCATGG+AGG | + | chr4.1:35725451-35725470 | None:intergenic | 35.0% | |
ACACTAAATTTCAAGAAGCG+TGG | - | chr4.1:35726424-35726443 | MS.gene055637:intron | 35.0% | |
AGTAAACTTTCATCCATGGA+GGG | + | chr4.1:35725450-35725469 | None:intergenic | 35.0% | |
AGTAACATCCTATGATGGTT+TGG | - | chr4.1:35725155-35725174 | MS.gene055637:intron | 35.0% | |
ATCAGAAGCAGAAACTAACT+AGG | + | chr4.1:35723348-35723367 | None:intergenic | 35.0% | |
CAACAAAACACACACAACAA+TGG | + | chr4.1:35723490-35723509 | None:intergenic | 35.0% | |
CAGTTTCATCATTTGCACAA+TGG | - | chr4.1:35726202-35726221 | MS.gene055637:intron | 35.0% | |
CGTAAAACAAAGTGTGTGTT+TGG | + | chr4.1:35724041-35724060 | None:intergenic | 35.0% | |
CTAAGAATAGGAAATGAGTG+CGG | + | chr4.1:35725956-35725975 | None:intergenic | 35.0% | |
CTCATGAAAAACAGTAGAGA+TGG | - | chr4.1:35724461-35724480 | MS.gene055637:intron | 35.0% | |
CTGATACACTTATGTCTAAG+TGG | + | chr4.1:35723926-35723945 | None:intergenic | 35.0% | |
GAAGACAAGAAATGAGATTG+AGG | + | chr4.1:35725004-35725023 | None:intergenic | 35.0% | |
GATAGCTACGATACAATGAA+AGG | + | chr4.1:35726373-35726392 | None:intergenic | 35.0% | |
GGGTTAATATGAAACTGTGA+TGG | - | chr4.1:35726515-35726534 | MS.gene055637:intron | 35.0% | |
GTGCAAATGATGAAACTGAA+AGG | + | chr4.1:35726200-35726219 | None:intergenic | 35.0% | |
TACAGTTGGCGATATTTAAC+AGG | - | chr4.1:35725539-35725558 | MS.gene055637:CDS | 35.0% | |
TATAATCTACAAGTCCTTCC+TGG | - | chr4.1:35724650-35724669 | MS.gene055637:intron | 35.0% | |
TCCATTTCTATACTTTCGGA+AGG | + | chr4.1:35725500-35725519 | None:intergenic | 35.0% | |
TCTACATATGGCGATAGAAA+AGG | - | chr4.1:35726088-35726107 | MS.gene055637:intron | 35.0% | |
TGTTTATTTCAGGGCATGTT+TGG | + | chr4.1:35724760-35724779 | None:intergenic | 35.0% | |
TTCGCATAAGTTGTTCCATA+AGG | - | chr4.1:35724710-35724729 | MS.gene055637:intron | 35.0% | |
TTGCGAAAGAACTAATAGCA+AGG | + | chr4.1:35725857-35725876 | None:intergenic | 35.0% | |
TTGTCTTGAAGATGATAGGT+TGG | - | chr4.1:35723274-35723293 | MS.gene055637:CDS | 35.0% | |
TTTCTATCGCCATATGTAGA+TGG | + | chr4.1:35726088-35726107 | None:intergenic | 35.0% | |
TTTGCAGTAACATCCTATGA+TGG | - | chr4.1:35725150-35725169 | MS.gene055637:intron | 35.0% | |
TTTGTATTTAGCACAAGCCT+TGG | - | chr4.1:35724266-35724285 | MS.gene055637:CDS | 35.0% | |
! | AACCCTAAACTCTCTTGTTT+CGG | - | chr4.1:35724437-35724456 | MS.gene055637:intron | 35.0% |
! | ACTGAAGTTTCTTTCTGAAG+AGG | + | chr4.1:35725413-35725432 | None:intergenic | 35.0% |
! | CAGGTAGTGAATGATCTTTT+TGG | - | chr4.1:35724534-35724553 | MS.gene055637:CDS | 35.0% |
! | CATTGTTGTGTGTGTTTTGT+TGG | - | chr4.1:35723488-35723507 | MS.gene055637:intron | 35.0% |
! | CTGAAGTTTCTTTCTGAAGA+GGG | + | chr4.1:35725412-35725431 | None:intergenic | 35.0% |
! | GTACTTATGCTTTTGTAGCA+GGG | - | chr4.1:35724357-35724376 | MS.gene055637:intron | 35.0% |
! | TGAAGTTTCTTTCTGAAGAG+GGG | + | chr4.1:35725411-35725430 | None:intergenic | 35.0% |
! | TTTGATGATAGACTCCTATC+TGG | + | chr4.1:35725591-35725610 | None:intergenic | 35.0% |
!! | AATGTTGATGGACTCATGTT+TGG | - | chr4.1:35725274-35725293 | MS.gene055637:intron | 35.0% |
!! | AATTGGCTCAACTGTTTTGA+GGG | - | chr4.1:35726008-35726027 | MS.gene055637:intron | 35.0% |
!! | ACATGAAATTTTGGAGAAGG+TGG | - | chr4.1:35725671-35725690 | MS.gene055637:intron | 35.0% |
!! | CATGAAATTTTGGAGAAGGT+GGG | - | chr4.1:35725672-35725691 | MS.gene055637:intron | 35.0% |
!! | TGGTTTTGCTGAATACAGTT+TGG | - | chr4.1:35723163-35723182 | MS.gene055637:CDS | 35.0% |
!!! | AGTTTTGACTACTCCAAAAG+TGG | + | chr4.1:35723727-35723746 | None:intergenic | 35.0% |
!!! | TGTTGGAGTGTTTTTTTAGG+AGG | - | chr4.1:35723505-35723524 | MS.gene055637:intron | 35.0% |
AATACTGCAATAGCAGAGGA+AGG | - | chr4.1:35724289-35724308 | MS.gene055637:CDS | 40.0% | |
ACTAGGAATTGACGAGAATC+GGG | + | chr4.1:35723331-35723350 | None:intergenic | 40.0% | |
ACTCCACGTGTGTTTATTTC+AGG | + | chr4.1:35724770-35724789 | None:intergenic | 40.0% | |
AGTCCGAAACAAGAGAGTTT+AGG | + | chr4.1:35724443-35724462 | None:intergenic | 40.0% | |
ATACCCAAGTAAGTCAGCTA+GGG | - | chr4.1:35726494-35726513 | MS.gene055637:intron | 40.0% | |
ATACTGCAATAGCAGAGGAA+GGG | - | chr4.1:35724290-35724309 | MS.gene055637:CDS | 40.0% | |
ATCCTTGACCATTTGAATGC+TGG | - | chr4.1:35725092-35725111 | MS.gene055637:intron | 40.0% | |
ATGATAGACTCCTATCTGGT+AGG | + | chr4.1:35725587-35725606 | None:intergenic | 40.0% | |
CAACCTCTGTAGACAACATT+AGG | + | chr4.1:35723257-35723276 | None:intergenic | 40.0% | |
CAACTAAGAGTTGCTACAGA+AGG | - | chr4.1:35723188-35723207 | MS.gene055637:CDS | 40.0% | |
CGTAGCTATCCTTTCAAATG+TGG | - | chr4.1:35726383-35726402 | MS.gene055637:intron | 40.0% | |
CGTTTCGTGTAGTTTATCGA+TGG | - | chr4.1:35726574-35726593 | MS.gene055637:intron | 40.0% | |
CTCAAAACAGTTGAGCCAAT+TGG | + | chr4.1:35726009-35726028 | None:intergenic | 40.0% | |
CTCCACGTGTGTTTATTTCA+GGG | + | chr4.1:35724769-35724788 | None:intergenic | 40.0% | |
CTTCCTGCCAAATTTCAAAC+AGG | + | chr4.1:35724891-35724910 | None:intergenic | 40.0% | |
CTTGAACAAGCTTCACCAAA+AGG | + | chr4.1:35725633-35725652 | None:intergenic | 40.0% | |
GACAACATTGTCTCTGAACA+TGG | - | chr4.1:35723221-35723240 | MS.gene055637:CDS | 40.0% | |
GACATGTTTGGATGTTCTTG+AGG | - | chr4.1:35723773-35723792 | MS.gene055637:intron | 40.0% | |
GAGGTTGTCTTGAAGATGAT+AGG | - | chr4.1:35723270-35723289 | MS.gene055637:CDS | 40.0% | |
GCTTGAAGATAGAATGCAGT+TGG | + | chr4.1:35726718-35726737 | None:intergenic | 40.0% | |
GTATACTACGGAAGAAAAGG+CGG | + | chr4.1:35726296-35726315 | None:intergenic | 40.0% | |
GTCCGAAACAAGAGAGTTTA+GGG | + | chr4.1:35724442-35724461 | None:intergenic | 40.0% | |
GTGCTACATGATGAATGACA+TGG | - | chr4.1:35726639-35726658 | MS.gene055637:CDS | 40.0% | |
TACCAGCATTCAAATGGTCA+AGG | + | chr4.1:35725097-35725116 | None:intergenic | 40.0% | |
TACTTGGGTATAGCAGTCAA+TGG | + | chr4.1:35726485-35726504 | None:intergenic | 40.0% | |
TATACCCAAGTAAGTCAGCT+AGG | - | chr4.1:35726493-35726512 | MS.gene055637:intron | 40.0% | |
TCGTGTAGTTTATCGATGGT+GGG | - | chr4.1:35726578-35726597 | MS.gene055637:intron | 40.0% | |
TCTGCTATTGCAGTATTCCA+AGG | + | chr4.1:35724286-35724305 | None:intergenic | 40.0% | |
TGATCATACACGGTTATGCA+AGG | + | chr4.1:35726333-35726352 | None:intergenic | 40.0% | |
TGATGAACATGTTGCGAATG+AGG | - | chr4.1:35725704-35725723 | MS.gene055637:intron | 40.0% | |
TGTCATTCATCATGTAGCAC+AGG | + | chr4.1:35726639-35726658 | None:intergenic | 40.0% | |
TGTCTCTGAACATGGTGAAA+AGG | - | chr4.1:35723229-35723248 | MS.gene055637:CDS | 40.0% | |
TTCAAACAGGTGTGTTAGCT+CGG | + | chr4.1:35724878-35724897 | None:intergenic | 40.0% | |
TTCGTGTAGTTTATCGATGG+TGG | - | chr4.1:35726577-35726596 | MS.gene055637:intron | 40.0% | |
TTGGAATACTGCAATAGCAG+AGG | - | chr4.1:35724285-35724304 | MS.gene055637:CDS | 40.0% | |
TTGGATGAACTGCCTTTGTA+GGG | - | chr4.1:35724202-35724221 | MS.gene055637:CDS | 40.0% | |
! | AACTGGTTTAAATGGTTGGC+AGG | - | chr4.1:35724409-35724428 | MS.gene055637:intron | 40.0% |
! | ACACCTGTTTGAAATTTGGC+AGG | - | chr4.1:35724885-35724904 | MS.gene055637:CDS | 40.0% |
! | ACTGTTACGTTAACGCCTTT+TGG | - | chr4.1:35725615-35725634 | MS.gene055637:CDS | 40.0% |
! | GCCTTCCGAAAGTATAGAAA+TGG | - | chr4.1:35725496-35725515 | MS.gene055637:intron | 40.0% |
! | GGTACTTATGCTTTTGTAGC+AGG | - | chr4.1:35724356-35724375 | MS.gene055637:intron | 40.0% |
! | TTGATTGGTTGTTGCTCTGA+TGG | - | chr4.1:35723572-35723591 | MS.gene055637:intron | 40.0% |
!! | ATTGGCTCAACTGTTTTGAG+GGG | - | chr4.1:35726009-35726028 | MS.gene055637:intron | 40.0% |
!! | CAATTGGCTCAACTGTTTTG+AGG | - | chr4.1:35726007-35726026 | MS.gene055637:intron | 40.0% |
!! | TTGATGGACTCATGTTTGGA+AGG | - | chr4.1:35725278-35725297 | MS.gene055637:intron | 40.0% |
!! | TTTTAATGGGCCTACCAGAT+AGG | - | chr4.1:35725574-35725593 | MS.gene055637:CDS | 40.0% |
AACAATTATGCCCTGCGTGT+AGG | + | chr4.1:35725926-35725945 | None:intergenic | 45.0% | |
AACCCATGAAATGGGCAATG+AGG | - | chr4.1:35724232-35724251 | MS.gene055637:CDS | 45.0% | |
AGCCTCATTGCCCATTTCAT+GGG | + | chr4.1:35724237-35724256 | None:intergenic | 45.0% | |
AGCGTTTCAACAAGTCTGCT+TGG | - | chr4.1:35723305-35723324 | MS.gene055637:intron | 45.0% | |
AGGCACTTGACCTTATACGA+TGG | - | chr4.1:35725239-35725258 | MS.gene055637:intron | 45.0% | |
ATACACAGTTGGCGATACCA+TGG | + | chr4.1:35726605-35726624 | None:intergenic | 45.0% | |
ATACACGGTTATGCAAGGTC+CGG | + | chr4.1:35726328-35726347 | None:intergenic | 45.0% | |
ATAGAATGCAGTTGGCCAAG+TGG | + | chr4.1:35726710-35726729 | None:intergenic | 45.0% | |
CACAAATTGACCTACACGCA+GGG | - | chr4.1:35725913-35725932 | MS.gene055637:intron | 45.0% | |
CTTGGATGAACTGCCTTTGT+AGG | - | chr4.1:35724201-35724220 | MS.gene055637:CDS | 45.0% | |
CTTTCATCCATGGAGGGAAA+AGG | + | chr4.1:35725444-35725463 | None:intergenic | 45.0% | |
GCTCCTAATGTTGTCTACAG+AGG | - | chr4.1:35723251-35723270 | MS.gene055637:CDS | 45.0% | |
GGATGTCCAACCCATGAAAT+GGG | - | chr4.1:35724224-35724243 | MS.gene055637:CDS | 45.0% | |
GGTTTAAATGGTTGGCAGGA+AGG | - | chr4.1:35724413-35724432 | MS.gene055637:intron | 45.0% | |
TACCCAAGTAAGTCAGCTAG+GGG | - | chr4.1:35726495-35726514 | MS.gene055637:intron | 45.0% | |
TAGAATGCAGTTGGCCAAGT+GGG | + | chr4.1:35726709-35726728 | None:intergenic | 45.0% | |
TATCGCCAACTGTGTATGCT+AGG | - | chr4.1:35726608-35726627 | MS.gene055637:CDS | 45.0% | |
TCACGCGAAAGACTTCTCTA+CGG | - | chr4.1:35726459-35726478 | MS.gene055637:intron | 45.0% | |
TCATTGCCCATTTCATGGGT+TGG | + | chr4.1:35724233-35724252 | None:intergenic | 45.0% | |
TCCATAATTCCTTTACGCGC+AGG | - | chr4.1:35725219-35725238 | MS.gene055637:intron | 45.0% | |
TGATGGGAGCAAGAAACAGA+AGG | - | chr4.1:35723130-35723149 | MS.gene055637:CDS | 45.0% | |
TGCCCTGAAATAAACACACG+TGG | - | chr4.1:35724764-35724783 | MS.gene055637:intron | 45.0% | |
TGCGTGTAGGTCAATTTGTG+CGG | + | chr4.1:35725913-35725932 | None:intergenic | 45.0% | |
TGGATGAACTGCCTTTGTAG+GGG | - | chr4.1:35724203-35724222 | MS.gene055637:CDS | 45.0% | |
TGTAGGTCAATTTGTGCGGA+TGG | + | chr4.1:35725909-35725928 | None:intergenic | 45.0% | |
! | AACCCCTAGCTGACTTACTT+GGG | + | chr4.1:35726500-35726519 | None:intergenic | 45.0% |
! | TAACCCCTAGCTGACTTACT+TGG | + | chr4.1:35726501-35726520 | None:intergenic | 45.0% |
! | TTGAGGGAGCATACATGACT+TGG | + | chr4.1:35724987-35725006 | None:intergenic | 45.0% |
!! | TTTTTAGGAGGAAGCACGAG+CGG | - | chr4.1:35723517-35723536 | MS.gene055637:intron | 45.0% |
!! | AATAAAAATAAATAAATTCA+AGG | + | chr4.1:35723878-35723897 | None:intergenic | 5.0% |
CAGCCTCATTGCCCATTTCA+TGG | + | chr4.1:35724238-35724257 | None:intergenic | 50.0% | |
CATCGGACGCCATCTACATA+TGG | - | chr4.1:35726076-35726095 | MS.gene055637:intron | 50.0% | |
CTACCTGTCCTCAAGTACTC+TGG | + | chr4.1:35724521-35724540 | None:intergenic | 50.0% | |
CTTAGTTCCATACGCTCTCC+AGG | + | chr4.1:35724671-35724690 | None:intergenic | 50.0% | |
GAAATGGGCAATGAGGCTGA+GGG | - | chr4.1:35724239-35724258 | MS.gene055637:CDS | 50.0% | |
GCACAAATTGACCTACACGC+AGG | - | chr4.1:35725912-35725931 | MS.gene055637:intron | 50.0% | |
GCCTGCGCGTAAAGGAATTA+TGG | + | chr4.1:35725223-35725242 | None:intergenic | 50.0% | |
GGGATGTCCAACCCATGAAA+TGG | - | chr4.1:35724223-35724242 | MS.gene055637:CDS | 50.0% | |
GGTCAATTTGTGCGGATGGA+TGG | + | chr4.1:35725905-35725924 | None:intergenic | 50.0% | |
GTCACAAGGGACTTGGCATT+TGG | + | chr4.1:35725380-35725399 | None:intergenic | 50.0% | |
TGAAATGGGCAATGAGGCTG+AGG | - | chr4.1:35724238-35724257 | MS.gene055637:CDS | 50.0% | |
TTGGCATTTGGTCTCTCACG+AGG | + | chr4.1:35725368-35725387 | None:intergenic | 50.0% | |
! | AGGGAGCATACATGACTTGG+TGG | + | chr4.1:35724984-35725003 | None:intergenic | 50.0% |
! | CAAGTACTCTGGAGGAGTGA+AGG | + | chr4.1:35724510-35724529 | None:intergenic | 50.0% |
! | TCACTCCTCCAGAGTACTTG+AGG | - | chr4.1:35724510-35724529 | MS.gene055637:CDS | 50.0% |
! | TGCTCTTCCTTTTCCCTCCA+TGG | - | chr4.1:35725434-35725453 | MS.gene055637:CDS | 50.0% |
!! | CACAATGGACTGCCGTATCA+TGG | - | chr4.1:35726217-35726236 | MS.gene055637:intron | 50.0% |
!! | GTTTATCGATGGTGGGACCA+TGG | - | chr4.1:35726585-35726604 | MS.gene055637:intron | 50.0% |
!! | TTTGGAGAAGGTGGGCTACA+AGG | - | chr4.1:35725680-35725699 | MS.gene055637:intron | 50.0% |
AGGGGTGAGAGCAGTCACAA+GGG | + | chr4.1:35725393-35725412 | None:intergenic | 55.0% | |
CAGCGCCTAGCATACACAGT+TGG | + | chr4.1:35726616-35726635 | None:intergenic | 55.0% | |
CCTGTCCTCAAGTACTCTGG+AGG | + | chr4.1:35724518-35724537 | None:intergenic | 55.0% | |
CTCAGTCGATAGCTCCCACT+TGG | - | chr4.1:35726692-35726711 | MS.gene055637:CDS | 55.0% | |
GAGAGCAGTCACAAGGGACT+TGG | + | chr4.1:35725387-35725406 | None:intergenic | 55.0% | |
GGGTTGGACATCCCCTACAA+AGG | + | chr4.1:35724217-35724236 | None:intergenic | 55.0% | |
GTTCCATACGCTCTCCAGGA+AGG | + | chr4.1:35724667-35724686 | None:intergenic | 55.0% | |
! | ACAGGTGTGTTAGCTCGGTG+AGG | + | chr4.1:35724873-35724892 | None:intergenic | 55.0% |
! | AGTCCTTCCTGGAGAGCGTA+TGG | - | chr4.1:35724661-35724680 | MS.gene055637:intron | 55.0% |
! | CCTCCAGAGTACTTGAGGAC+AGG | - | chr4.1:35724515-35724534 | MS.gene055637:CDS | 55.0% |
!! | GACATGGCACAAGAAGCGCT+TGG | - | chr4.1:35726655-35726674 | MS.gene055637:CDS | 55.0% |
ATGGGCAATGAGGCTGAGGG+TGG | - | chr4.1:35724242-35724261 | MS.gene055637:CDS | 60.0% | |
GAGGGGTGAGAGCAGTCACA+AGG | + | chr4.1:35725394-35725413 | None:intergenic | 60.0% | |
GCAGTTGCACTCTCCAGCCT+TGG | - | chr4.1:35726736-35726755 | MS.gene055637:CDS | 60.0% | |
GGTCAAGTGCCTGCGCGTAA+AGG | + | chr4.1:35725231-35725250 | None:intergenic | 60.0% | |
! | AGGAGGAAGCACGAGCGGTA+GGG | - | chr4.1:35723522-35723541 | MS.gene055637:intron | 60.0% |
! | TAGGAGGAAGCACGAGCGGT+AGG | - | chr4.1:35723521-35723540 | MS.gene055637:intron | 60.0% |
CACGAGCGGTAGGGGAGCTA+AGG | - | chr4.1:35723531-35723550 | MS.gene055637:intron | 65.0% | |
GCACTCTCCAGCCTTGGCCA+TGG | - | chr4.1:35726742-35726761 | MS.gene055637:CDS | 65.0% | |
! | GGAGGAAGCACGAGCGGTAG+GGG | - | chr4.1:35723523-35723542 | MS.gene055637:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 35723126 | 35726768 | 35723126 | ID=MS.gene055637 |
chr4.1 | mRNA | 35723126 | 35726768 | 35723126 | ID=MS.gene055637.t1;Parent=MS.gene055637 |
chr4.1 | exon | 35726599 | 35726768 | 35726599 | ID=MS.gene055637.t1.exon1;Parent=MS.gene055637.t1 |
chr4.1 | CDS | 35726599 | 35726768 | 35726599 | ID=cds.MS.gene055637.t1;Parent=MS.gene055637.t1 |
chr4.1 | exon | 35726235 | 35726370 | 35726235 | ID=MS.gene055637.t1.exon2;Parent=MS.gene055637.t1 |
chr4.1 | CDS | 35726235 | 35726370 | 35726235 | ID=cds.MS.gene055637.t1;Parent=MS.gene055637.t1 |
chr4.1 | exon | 35725538 | 35725671 | 35725538 | ID=MS.gene055637.t1.exon3;Parent=MS.gene055637.t1 |
chr4.1 | CDS | 35725538 | 35725671 | 35725538 | ID=cds.MS.gene055637.t1;Parent=MS.gene055637.t1 |
chr4.1 | exon | 35725358 | 35725463 | 35725358 | ID=MS.gene055637.t1.exon4;Parent=MS.gene055637.t1 |
chr4.1 | CDS | 35725358 | 35725463 | 35725358 | ID=cds.MS.gene055637.t1;Parent=MS.gene055637.t1 |
chr4.1 | exon | 35724858 | 35724987 | 35724858 | ID=MS.gene055637.t1.exon5;Parent=MS.gene055637.t1 |
chr4.1 | CDS | 35724858 | 35724987 | 35724858 | ID=cds.MS.gene055637.t1;Parent=MS.gene055637.t1 |
chr4.1 | exon | 35724464 | 35724653 | 35724464 | ID=MS.gene055637.t1.exon6;Parent=MS.gene055637.t1 |
chr4.1 | CDS | 35724464 | 35724653 | 35724464 | ID=cds.MS.gene055637.t1;Parent=MS.gene055637.t1 |
chr4.1 | exon | 35724169 | 35724333 | 35724169 | ID=MS.gene055637.t1.exon7;Parent=MS.gene055637.t1 |
chr4.1 | CDS | 35724169 | 35724333 | 35724169 | ID=cds.MS.gene055637.t1;Parent=MS.gene055637.t1 |
chr4.1 | exon | 35723393 | 35723506 | 35723393 | ID=MS.gene055637.t1.exon8;Parent=MS.gene055637.t1 |
chr4.1 | CDS | 35723393 | 35723506 | 35723393 | ID=cds.MS.gene055637.t1;Parent=MS.gene055637.t1 |
chr4.1 | exon | 35723126 | 35723308 | 35723126 | ID=MS.gene055637.t1.exon9;Parent=MS.gene055637.t1 |
chr4.1 | CDS | 35723126 | 35723308 | 35723126 | ID=cds.MS.gene055637.t1;Parent=MS.gene055637.t1 |
Gene Sequence |
Protein sequence |