Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055876 | MS.gene34700 | 0.855567 | 5.79E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 17 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCGTTCAGTACTGGGAATA+TGG | 0.302089 | 8.3:-42721472 | MS.gene055876:CDS |
| TGGGAGATATGACAGATCTA+TGG | 0.334089 | 8.3:-42730051 | MS.gene055876:CDS |
| TCAAACTTACTTTCCATGTC+TGG | 0.400108 | 8.3:+42720990 | None:intergenic |
| TCTCCCAACCCGTTCAGTAC+TGG | 0.409727 | 8.3:-42721480 | MS.gene055876:CDS |
| CTCCCAACCCGTTCAGTACT+GGG | 0.443973 | 8.3:-42721479 | MS.gene055876:CDS |
| TTCCCAGTACTGAACGGGTT+GGG | 0.465952 | 8.3:+42721477 | None:intergenic |
| CCATATTCCCAGTACTGAAC+GGG | 0.471927 | 8.3:+42721472 | None:intergenic |
| GGGAGATATGACAGATCTAT+GGG | 0.538121 | 8.3:-42730050 | MS.gene055876:CDS |
| TCCATATTCCCAGTACTGAA+CGG | 0.550792 | 8.3:+42721471 | None:intergenic |
| AACGCGTTGGTGAACACGCA+AGG | 0.563712 | 8.3:+42721026 | None:intergenic |
| TTCAGTACTGGGAATATGGA+TGG | 0.571027 | 8.3:-42721468 | MS.gene055876:intron |
| ATTCCCAGTACTGAACGGGT+TGG | 0.599227 | 8.3:+42721476 | None:intergenic |
| CTTCTCAGTAATAAACGCGT+TGG | 0.613855 | 8.3:+42721013 | None:intergenic |
| TATTACTGAGAAGCCAGACA+TGG | 0.619390 | 8.3:-42721003 | MS.gene055876:CDS |
| AAAACAATGAACAGAAGTTG+CGG | 0.655077 | 8.3:-42721529 | MS.gene055876:intron |
| ACAATGAACAGAAGTTGCGG+TGG | 0.666287 | 8.3:-42721526 | MS.gene055876:intron |
| ACAATGAACAGATGTTACTG+AGG | 0.694420 | 8.3:-42720893 | MS.gene055876:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 42720882 | 42730074 | 42720882 | ID=MS.gene055876 |
| chr8.3 | mRNA | 42720882 | 42730074 | 42720882 | ID=MS.gene055876.t1;Parent=MS.gene055876 |
| chr8.3 | exon | 42730014 | 42730074 | 42730014 | ID=MS.gene055876.t1.exon1;Parent=MS.gene055876.t1 |
| chr8.3 | CDS | 42730014 | 42730074 | 42730014 | ID=cds.MS.gene055876.t1;Parent=MS.gene055876.t1 |
| chr8.3 | exon | 42721469 | 42721537 | 42721469 | ID=MS.gene055876.t1.exon2;Parent=MS.gene055876.t1 |
| chr8.3 | CDS | 42721469 | 42721537 | 42721469 | ID=cds.MS.gene055876.t1;Parent=MS.gene055876.t1 |
| chr8.3 | exon | 42721000 | 42721080 | 42721000 | ID=MS.gene055876.t1.exon3;Parent=MS.gene055876.t1 |
| chr8.3 | CDS | 42721000 | 42721080 | 42721000 | ID=cds.MS.gene055876.t1;Parent=MS.gene055876.t1 |
| chr8.3 | exon | 42720882 | 42720904 | 42720882 | ID=MS.gene055876.t1.exon4;Parent=MS.gene055876.t1 |
| chr8.3 | CDS | 42720882 | 42720904 | 42720882 | ID=cds.MS.gene055876.t1;Parent=MS.gene055876.t1 |
| Gene Sequence |
| Protein sequence |
