AlfalfaGEDB | MS.gene056048

M. sativa cultivar XinJiangDaYe / MS.gene056048

KEGG: K08065
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00808.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056048.t1	XP_003591124.1	98.4	126	2	0	1	126	1	126	2.20E-65	258.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056048.t1	O04027	63.5	126	41	2	1	122	1	125	2.4e-36	152.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056048.t1	G7I854	98.4	126	2	0	1	126	1	126	1.6e-65	258.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene056048.t1	TF	NF-YB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene056048	MS.gene44111	0.898092	7.44E-77	-1.69E-46

Showing 1 to 1 of 1 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056048.t1	MTR_1g083070	98.413	126	2	0	1	126	1	126	4.07e-93	264
MS.gene056048.t1	MTR_1g088860	72.632	95	26	0	4	98	36	130	8.68e-50	157
MS.gene056048.t1	MTR_0392s0020	68.687	99	31	0	4	102	18	116	7.30e-48	150
MS.gene056048.t1	MTR_4g119500	71.579	95	27	0	4	98	22	116	7.16e-47	147
MS.gene056048.t1	MTR_4g133938	55.752	113	44	1	6	112	21	133	9.62e-42	135
MS.gene056048.t1	MTR_2g026710	63.043	92	34	0	4	95	17	108	1.01e-39	130
MS.gene056048.t1	MTR_3g058980	60.870	92	36	0	4	95	27	118	7.75e-39	129
MS.gene056048.t1	MTR_8g093920	59.794	97	39	0	4	100	40	136	8.25e-39	130
MS.gene056048.t1	MTR_5g095740	60.870	92	36	0	4	95	23	114	2.55e-38	127
MS.gene056048.t1	MTR_8g091720	60.870	92	36	0	4	95	28	119	4.51e-38	127

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056048.t1	AT1G09030	63.492	126	41	2	1	122	1	125	5.39e-51	158
MS.gene056048.t1	AT2G47810	68.421	95	30	0	1	95	48	142	1.76e-45	145
MS.gene056048.t1	AT5G47640	64.130	92	33	0	4	95	27	118	1.90e-40	133
MS.gene056048.t1	AT4G14540	60.870	92	36	0	4	95	21	112	2.70e-39	129
MS.gene056048.t1	AT2G13570	59.000	100	41	0	4	103	36	135	8.87e-39	130
MS.gene056048.t1	AT2G38880	52.212	113	50	1	4	116	21	129	7.16e-38	125
MS.gene056048.t1	AT2G38880	52.212	113	50	1	4	116	21	129	8.79e-38	125
MS.gene056048.t1	AT2G38880	52.212	113	50	1	4	116	21	129	8.79e-38	125
MS.gene056048.t1	AT2G38880	52.212	113	50	1	4	116	21	129	8.79e-38	125
MS.gene056048.t1	AT2G38880	58.242	91	38	0	4	94	21	111	1.00e-37	124

Showing 1 to 10 of 34 entries

Previous1 2 3 4Next

Find 20 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGTTGCCCATAGCGAATG+TGG	0.514518	1.1:-61478691	MS.gene056048:CDS
ACGTTGCCCATAGCGAATGT+GGG	0.650019	1.1:-61478690	MS.gene056048:CDS
ACTATGCTGAAGCTATTGGA+AGG	0.633037	1.1:-61478476	MS.gene056048:CDS
AGAATCGCAAGACAGTTAAT+GGG	0.432736	1.1:-61478539	MS.gene056048:CDS
AGCATCTGACAAGTGTCACA+AGG	0.642405	1.1:-61478562	MS.gene056048:CDS
ATTCTACCCACATTCGCTAT+GGG	0.529148	1.1:+61478684	None:intergenic
GAATCGCAAGACAGTTAATG+GGG	0.668357	1.1:-61478538	MS.gene056048:CDS
GACAACTATGCTGAAGCTAT+TGG	0.407603	1.1:-61478480	MS.gene056048:CDS
GAGAATCGCAAGACAGTTAA+TGG	0.277173	1.1:-61478540	MS.gene056048:CDS
GAGTTCATAAGTTTCGTGAC+AGG	0.522754	1.1:-61478588	MS.gene056048:CDS

Showing 1 to 10 of 20 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTACAGATGACTACTATGTT+TGG	+	chr1.1:61478714-61478733	None:intergenic	30.0%
AGAATCGCAAGACAGTTAAT+GGG	-	chr1.1:61478522-61478541	MS.gene056048:CDS	35.0%
TGACTACTATGTTTGGTACT+TGG	+	chr1.1:61478707-61478726	None:intergenic	35.0%
ACTATGCTGAAGCTATTGGA+AGG	-	chr1.1:61478585-61478604	MS.gene056048:CDS	40.0%
ATTCTACCCACATTCGCTAT+GGG	+	chr1.1:61478380-61478399	None:intergenic	40.0%
GAATCGCAAGACAGTTAATG+GGG	-	chr1.1:61478523-61478542	MS.gene056048:CDS	40.0%
GACAACTATGCTGAAGCTAT+TGG	-	chr1.1:61478581-61478600	MS.gene056048:CDS	40.0%
GAGAATCGCAAGACAGTTAA+TGG	-	chr1.1:61478521-61478540	MS.gene056048:CDS	40.0%
GAGTTCATAAGTTTCGTGAC+AGG	-	chr1.1:61478473-61478492	MS.gene056048:CDS	40.0%
TAATGGGGATGACATCTGTT+GGG	-	chr1.1:61478538-61478557	MS.gene056048:CDS	40.0%

Showing 1 to 10 of 20 entries

Previous1 2Next

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	61478350	61478733	61478350	ID=MS.gene056048
chr1.1	mRNA	61478350	61478733	61478350	ID=MS.gene056048.t1;Parent=MS.gene056048
chr1.1	exon	61478350	61478733	61478350	ID=MS.gene056048.t1.exon1;Parent=MS.gene056048.t1
chr1.1	CDS	61478350	61478733	61478350	ID=cds.MS.gene056048.t1;Parent=MS.gene056048.t1

Gene Sequence

>MS.gene056048

ATGAACGATGAGGGAGATAAAACGTTGCCCATAGCGAATGTGGGTAGAATAATGAAGCAAAATCTTCCTCCCACTGCAAAGATCTCAAAAGAAAGCAAACAGTTGATGCAAGAATGTGCGACAGAGTTCATAAGTTTCGTGACAGGTGAAGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACAGTTAATGGGGATGACATCTGTTGGGCTTTGTGTTCGTTAGGGTTTGACAACTATGCTGAAGCTATTGGAAGGTACTTGTATAAATTCAGACAAGCTGAACTTGTTAGAATAAATCAGAACAAACTTCATGAAACTGCAAAAGACAAGTTTGAAGAAGATGCAACAAATCCAAGTACCAAACATAGTAGTCATCTGTAA

Protein sequence

>MS.gene056048.t1

MNDEGDKTLPIANVGRIMKQNLPPTAKISKESKQLMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALCSLGFDNYAEAIGRYLYKFRQAELVRINQNKLHETAKDKFEEDATNPSTKHSSHL