AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056056

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056056.t1 MTR_1g083250 92.694 876 58 2 1 870 1 876 0.0 1601
MS.gene056056.t1 MTR_1g083250 92.969 768 48 2 1 762 1 768 0.0 1418
MS.gene056056.t1 MTR_1g083250 92.244 606 41 2 1 600 1 606 0.0 1095
MS.gene056056.t1 MTR_3g063040 45.540 213 106 2 149 361 7 209 3.73e-51 194
MS.gene056056.t1 MTR_3g063040 33.591 259 157 5 503 758 234 480 1.16e-34 143
MS.gene056056.t1 MTR_2g042440 37.917 240 131 6 149 381 33 261 4.49e-42 165
MS.gene056056.t1 MTR_2g042440 33.503 197 115 5 504 685 266 461 8.53e-20 95.1
MS.gene056056.t1 MTR_2g042440 37.917 240 131 6 149 381 33 261 4.73e-42 165
MS.gene056056.t1 MTR_2g042440 33.503 197 115 5 504 685 266 461 8.77e-20 95.1
MS.gene056056.t1 MTR_1g083840 43.056 216 102 6 154 359 197 401 3.13e-40 158
MS.gene056056.t1 MTR_1g083840 33.945 218 119 7 472 666 383 598 8.94e-24 107
MS.gene056056.t1 MTR_5g026590 36.400 250 126 5 118 360 49 272 1.65e-37 150
MS.gene056056.t1 MTR_5g026590 36.364 165 97 4 504 666 300 458 4.70e-25 112
MS.gene056056.t1 MTR_2g006440 37.004 227 123 5 142 359 392 607 5.68e-36 147
MS.gene056056.t1 MTR_2g006440 29.730 222 124 4 466 666 605 815 1.17e-20 98.6
MS.gene056056.t1 MTR_8g080160 32.075 212 127 6 149 355 267 466 4.13e-21 99.8
MS.gene056056.t1 MTR_8g080160 34.595 185 99 5 504 686 496 660 8.80e-21 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056056.t1 AT5G27680 52.768 885 357 19 7 867 4 851 0.0 827
MS.gene056056.t1 AT5G27680 52.768 885 357 19 7 867 4 851 0.0 827
MS.gene056056.t1 AT5G27680 52.768 885 357 19 7 867 4 851 0.0 827
MS.gene056056.t1 AT5G27680 52.768 885 357 19 7 867 4 851 0.0 827
MS.gene056056.t1 AT5G27680 57.162 740 273 11 137 867 17 721 0.0 805
MS.gene056056.t1 AT5G27680 51.613 837 332 19 7 819 4 791 0.0 778
MS.gene056056.t1 AT4G35740 39.300 257 134 8 133 381 13 255 3.99e-43 168
MS.gene056056.t1 AT4G35740 35.266 207 123 6 503 703 259 460 1.16e-22 104
MS.gene056056.t1 AT3G05740 34.451 328 162 12 48 359 31 321 3.32e-41 159
MS.gene056056.t1 AT3G05740 36.508 189 113 5 479 660 320 508 3.75e-25 111
MS.gene056056.t1 AT3G05740 34.451 328 162 12 48 359 116 406 5.79e-41 160
MS.gene056056.t1 AT3G05740 36.508 189 113 5 479 660 405 593 3.41e-25 112
MS.gene056056.t1 AT1G31360 39.035 228 121 5 141 360 72 289 2.05e-40 157
MS.gene056056.t1 AT1G31360 37.725 167 92 4 504 666 317 475 3.95e-24 107
MS.gene056056.t1 AT1G31360 39.035 228 121 5 141 360 72 289 2.05e-40 157
MS.gene056056.t1 AT1G31360 37.725 167 92 4 504 666 317 475 3.95e-24 107
MS.gene056056.t1 AT1G31360 39.035 228 121 5 141 360 72 289 2.47e-40 157
MS.gene056056.t1 AT1G31360 37.725 167 92 4 504 666 317 475 4.71e-24 108
MS.gene056056.t1 AT1G31360 39.035 228 121 5 141 360 72 289 4.49e-40 157
MS.gene056056.t1 AT1G31360 37.725 167 92 4 504 666 317 475 5.69e-24 107
MS.gene056056.t1 AT1G31360 39.035 228 121 5 141 360 72 289 7.53e-40 158
MS.gene056056.t1 AT1G31360 37.725 167 92 4 504 666 317 475 4.09e-24 108
MS.gene056056.t1 AT1G31360 39.035 228 121 5 141 360 72 289 7.69e-40 157
MS.gene056056.t1 AT1G31360 37.725 167 92 4 504 666 317 475 4.70e-24 108
MS.gene056056.t1 AT1G31360 39.035 228 121 5 141 360 106 323 1.25e-39 157
MS.gene056056.t1 AT1G31360 37.725 167 92 4 504 666 351 509 5.10e-24 108
MS.gene056056.t1 AT1G10930 39.381 226 119 4 142 359 437 652 6.60e-39 157
MS.gene056056.t1 AT1G10930 30.000 220 124 5 466 666 650 858 3.10e-19 94.0
MS.gene056056.t1 AT1G31360 37.931 174 90 5 195 360 1 164 6.54e-25 110
MS.gene056056.t1 AT1G31360 37.725 167 92 4 504 666 192 350 3.11e-24 108
MS.gene056056.t1 AT1G27880 32.000 275 156 10 37 299 156 411 8.95e-24 108
MS.gene056056.t1 AT1G27880 30.698 215 126 4 476 688 460 653 3.08e-21 100
MS.gene056056.t1 AT1G27880 32.000 275 156 10 37 299 156 411 9.52e-24 108
MS.gene056056.t1 AT1G27880 40.000 130 76 1 476 603 460 589 4.04e-21 99.8
MS.gene056056.t1 AT4G35740 35.437 206 122 6 504 703 167 367 8.43e-23 104
MS.gene056056.t1 AT4G35740 36.207 174 93 6 216 382 1 163 9.33e-21 98.2

Find 195 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCTCTTTCTTTGCTTTC+TGG 0.029749 1.1:+61556103 None:intergenic
TCATGTTGTCTGATTGTTTC+AGG 0.167882 1.1:-61557819 MS.gene056056:intron
GGAATCAGTGCTTGCTTTCT+TGG 0.174833 1.1:-61561070 MS.gene056056:CDS
AGGTACATTGTGTTTCTAAA+TGG 0.200952 1.1:-61560788 MS.gene056056:CDS
CTCCTCTTTCTTTGCTTTCT+GGG 0.202932 1.1:+61556104 None:intergenic
GAGAGGCCTTACTCGAATTT+TGG 0.206454 1.1:-61556649 MS.gene056056:CDS
AATTCTCACTGTATCCTTTC+TGG 0.206916 1.1:+61559014 None:intergenic
CGACGTTAGTTAGAAGTATA+AGG 0.213670 1.1:-61556830 MS.gene056056:CDS
CAGATTCCTGCATTGTTAAC+TGG 0.214970 1.1:-61561163 MS.gene056056:CDS
CCGACCTAATTTACGCTTCA+TGG 0.222789 1.1:-61560333 MS.gene056056:intron
CATGAATTGATTAAAGTATA+TGG 0.229820 1.1:-61560175 MS.gene056056:CDS
TGCTTAAAGCTAACAAAATA+TGG 0.257399 1.1:-61561091 MS.gene056056:CDS
TGGAAGCTAAAGGATATATC+AGG 0.276706 1.1:-61556629 MS.gene056056:CDS
GACCAGCCCGTCCAGCTTCT+TGG 0.276926 1.1:+61558118 None:intergenic
AGTGCTTGCTTTCTTGGCTC+TGG 0.283584 1.1:-61561064 MS.gene056056:CDS
TCAAGTAACATATCTGCTTC+AGG 0.308163 1.1:+61556251 None:intergenic
AAAATTGACAATTGAGTTCC+TGG 0.308786 1.1:-61559978 MS.gene056056:CDS
TACTACTGGATTGAAAATAA+TGG 0.314501 1.1:+61561917 None:intergenic
TCGTGCATTAGGCTTATTAA+AGG 0.317600 1.1:+61561118 None:intergenic
GTTTCATGAAAATACTTTAG+AGG 0.319856 1.1:-61558623 MS.gene056056:intron
AAATATTAGACATACATTTC+GGG 0.325549 1.1:+61557230 None:intergenic
CTGGGGCTCTGCCGCTTTGT+TGG 0.334900 1.1:+61556122 None:intergenic
TTAAGCATTGATCGTGCATT+AGG 0.345019 1.1:+61561107 None:intergenic
AATTTCAGAAATGGTTGAAA+TGG 0.346216 1.1:-61562148 MS.gene056056:CDS
GTAGCTGTCAATGCCATTAC+AGG 0.346440 1.1:+61560437 None:intergenic
GTCCTGGCTGCAACTGGATC+TGG 0.352110 1.1:-61561649 MS.gene056056:intron
TGTCTTGTCCTGGCTGCAAC+TGG 0.355697 1.1:-61561655 MS.gene056056:CDS
TTCTATCCTTGGAATTGAAA+TGG 0.358591 1.1:+61556877 None:intergenic
GGTACATTGTGTTTCTAAAT+GGG 0.363382 1.1:-61560787 MS.gene056056:CDS
CAAAATGCTTAAGGAGCCTT+TGG 0.374962 1.1:-61559067 MS.gene056056:CDS
ATCAGAAGCACCAGAGCTAA+TGG 0.378965 1.1:+61560108 None:intergenic
ATGGGATTTGATCATGATTC+CGG 0.381282 1.1:-61561811 MS.gene056056:CDS
AACCTAGTTCTGTTAGTTCC+GGG 0.382236 1.1:+61556318 None:intergenic
TTTCCCATTGACTTTACTAC+TGG 0.382348 1.1:+61561903 None:intergenic
CAGCCGACTGTCTGCATTGA+GGG 0.386843 1.1:-61560504 MS.gene056056:CDS
AACCTGATTTGAGGACTTCT+CGG 0.388639 1.1:-61556067 MS.gene056056:CDS
CTCAGATAACTCACATTGCT+TGG 0.392448 1.1:+61559125 None:intergenic
CTCACCATGAAGCGTAAATT+AGG 0.393071 1.1:+61560329 None:intergenic
TTTCGATGTTGCATCTGATT+GGG 0.396900 1.1:-61561776 MS.gene056056:CDS
GGAGCAAGTAATTTCAGAAA+TGG 0.397883 1.1:-61562157 MS.gene056056:CDS
ATTTCAGAAATGGTTGAAAT+GGG 0.400700 1.1:-61562147 MS.gene056056:CDS
CGCAACAATTGCGTTTGGAA+TGG 0.401303 1.1:-61558367 MS.gene056056:CDS
AAACCTAGTTCTGTTAGTTC+CGG 0.406501 1.1:+61556317 None:intergenic
ATGTGACACTTCCAAGTAAT+GGG 0.412868 1.1:-61562002 MS.gene056056:CDS
GTGCTTGCTTTCTTGGCTCT+GGG 0.414131 1.1:-61561063 MS.gene056056:CDS
TTTAGAGCTTTCCCATTACT+TGG 0.421127 1.1:+61561991 None:intergenic
ATTTCGATGTTGCATCTGAT+TGG 0.422496 1.1:-61561777 MS.gene056056:CDS
GCAACAATTGCGTTTGGAAT+GGG 0.425033 1.1:-61558366 MS.gene056056:CDS
TAGCTTCCAAAATTCGAGTA+AGG 0.426091 1.1:+61556643 None:intergenic
GTTCTCCTCATTCTCAGAAT+GGG 0.429453 1.1:-61556210 MS.gene056056:CDS
AGTCCTTCTTAGATGTAACT+TGG 0.431411 1.1:+61558654 None:intergenic
CCGTCCAGCTTCTTGGTAGT+AGG 0.435309 1.1:+61558125 None:intergenic
CCCCATCATCACAGTCATCT+TGG 0.437207 1.1:+61560050 None:intergenic
AGACGCTGACGACGGATCTC+AGG 0.437866 1.1:+61556170 None:intergenic
TCTCGACTTTGGAACTTGAA+TGG 0.438663 1.1:+61561948 None:intergenic
CAATCCAGTAGTAAAGTCAA+TGG 0.441032 1.1:-61561907 MS.gene056056:CDS
CCCCGAGAAGTCCTCAAATC+AGG 0.441620 1.1:+61556065 None:intergenic
TTGCTCCGAAGATTTGTTGT+TGG 0.441849 1.1:+61562173 None:intergenic
AAAGTGATGGCTTCCTTGCT+AGG 0.443758 1.1:+61557884 None:intergenic
AGATGCGATGTGTGCAATAA+TGG 0.445535 1.1:-61557315 MS.gene056056:CDS
CGTTCTCCTCATTCTCAGAA+TGG 0.446289 1.1:-61556211 MS.gene056056:CDS
ACCTGATTTGAGGACTTCTC+GGG 0.446808 1.1:-61556066 MS.gene056056:CDS
TGGTTGATCGTTCTCGACTT+TGG 0.452375 1.1:+61561937 None:intergenic
TACAGGTATATCGAATTTCA+AGG 0.452985 1.1:+61560454 None:intergenic
GTTGTCGCAACAATTGCGTT+TGG 0.453299 1.1:-61558372 MS.gene056056:CDS
AGATTCCTGCATTGTTAACT+GGG 0.455469 1.1:-61561162 MS.gene056056:CDS
GCCAAGTATCTCTGCAAGTC+TGG 0.455654 1.1:-61558991 MS.gene056056:CDS
CTCAGAATGGGGAAAAGGTT+GGG 0.456103 1.1:-61556198 MS.gene056056:CDS
GAAATTCGATATACCTGTAA+TGG 0.458052 1.1:-61560450 MS.gene056056:CDS
TCCTCTTTCTTTGCTTTCTG+GGG 0.458472 1.1:+61556105 None:intergenic
GGAACTAACAGAACTAGGTT+TGG 0.462883 1.1:-61556315 MS.gene056056:CDS
GATGGCCTTTCCATTAGCTC+TGG 0.464996 1.1:-61560118 MS.gene056056:CDS
GAAAGAGTCCTTACCGCGAA+TGG 0.465084 1.1:-61561830 MS.gene056056:CDS
GACGTTAGTTAGAAGTATAA+GGG 0.466199 1.1:-61556829 MS.gene056056:CDS
GCCCCAGAAAGCAAAGAAAG+AGG 0.467262 1.1:-61556106 MS.gene056056:CDS
AAGATATGCTCCACAACGCT+TGG 0.467897 1.1:+61562072 None:intergenic
AATTCCAAGGATAGAAAACT+AGG 0.471075 1.1:-61556870 MS.gene056056:CDS
TCATTCTCAGAATGGGGAAA+AGG 0.471946 1.1:-61556203 MS.gene056056:CDS
GCTGGACGGGCTGGTCGAGA+TGG 0.473557 1.1:-61558111 MS.gene056056:CDS
CTTTCAAAGTGCGGATGACT+TGG 0.477834 1.1:-61559939 MS.gene056056:CDS
ATGGATATCATCATTATATG+AGG 0.479246 1.1:+61556896 None:intergenic
TTGAGGGAAAATTTCACTAC+TGG 0.479678 1.1:-61560488 MS.gene056056:CDS
CAAGTAACATATCTGCTTCA+GGG 0.482660 1.1:+61556252 None:intergenic
TCTCACTGTATCCTTTCTGG+TGG 0.485281 1.1:+61559017 None:intergenic
AGAAGGAAGCTCTCTCTGCT+TGG 0.486781 1.1:-61561693 MS.gene056056:CDS
ATAGAAAGTTTCTTCAGTCA+TGG 0.489291 1.1:+61556280 None:intergenic
ACCAGACTTGCAGAGATACT+TGG 0.491446 1.1:+61558990 None:intergenic
AACCAAGATGACTGTGATGA+TGG 0.492702 1.1:-61560052 MS.gene056056:CDS
CATGTGACACTTCCAAGTAA+TGG 0.494052 1.1:-61562003 MS.gene056056:CDS
ATCAAATCCCATTCGCGGTA+AGG 0.496454 1.1:+61561822 None:intergenic
TCATAGAGATTGTCTTGTCC+TGG 0.498304 1.1:-61561665 MS.gene056056:CDS
AAAATAACAAACCTGTAAGC+TGG 0.501500 1.1:+61560750 None:intergenic
TACCAAGAAGCTGGACGGGC+TGG 0.501960 1.1:-61558120 MS.gene056056:CDS
TCAGATAACTCACATTGCTT+GGG 0.503093 1.1:+61559126 None:intergenic
TTCGATGTTGCATCTGATTG+GGG 0.505199 1.1:-61561775 MS.gene056056:CDS
CTTAAGGAGCCTTTGGAACA+AGG 0.507291 1.1:-61559060 MS.gene056056:CDS
TCTCAGAATGGGGAAAAGGT+TGG 0.507588 1.1:-61556199 MS.gene056056:CDS
AACTCACATTGCTTGGGAGG+AGG 0.508673 1.1:+61559132 None:intergenic
TCAGGCACGTAGCTGTTCCA+TGG 0.509554 1.1:-61556922 MS.gene056056:intron
GGATTCCAACAACAAATCTT+CGG 0.511479 1.1:-61562178 MS.gene056056:CDS
CAGTGTTTCTTCTTATGATG+TGG 0.514916 1.1:-61560080 MS.gene056056:CDS
CTAACTAACGTCGTAAGACT+TGG 0.515548 1.1:+61556840 None:intergenic
AGTTAGAAGTATAAGGGAGC+AGG 0.515729 1.1:-61556823 MS.gene056056:intron
ATCATTATATGAGGAATCCA+TGG 0.518899 1.1:+61556905 None:intergenic
AAAGAGTCCTTACCGCGAAT+GGG 0.522280 1.1:-61561829 MS.gene056056:CDS
GTGGGTACATATATAATTGT+CGG 0.525076 1.1:+61559036 None:intergenic
CTGGACGGGCTGGTCGAGAT+GGG 0.526400 1.1:-61558110 MS.gene056056:CDS
TGATATCCATTTCAATTCCA+AGG 0.529380 1.1:-61556883 MS.gene056056:CDS
AATCCAGTAGTAAAGTCAAT+GGG 0.530343 1.1:-61561906 MS.gene056056:CDS
CATTACTTGGAAGTGTCACA+TGG 0.531077 1.1:+61562004 None:intergenic
TTTACTGCAAACTATAATGC+GGG 0.533067 1.1:-61557253 MS.gene056056:CDS
CTACTACCAAGAAGCTGGAC+GGG 0.535795 1.1:-61558124 MS.gene056056:CDS
CTACGACTTGGCAAAAGTGA+TGG 0.536192 1.1:+61557871 None:intergenic
CCATACCTTAGGATAGTCTC+TGG 0.536706 1.1:+61560977 None:intergenic
TTCTATATGCAAACCTAGCA+AGG 0.537574 1.1:-61557897 MS.gene056056:CDS
TCTCGAAGCAATAAAAGTAG+TGG 0.549601 1.1:-61562106 MS.gene056056:CDS
GAAGCCTACTACCAAGAAGC+TGG 0.550306 1.1:-61558129 MS.gene056056:CDS
TCAAAGACTGAATCTAAAAG+AGG 0.550557 1.1:-61557286 MS.gene056056:CDS
ACCAAGATGACTGTGATGAT+GGG 0.551092 1.1:-61560051 MS.gene056056:CDS
TGCCCAAGTTACATCTAAGA+AGG 0.551742 1.1:-61558657 MS.gene056056:CDS
AACCAGATCCAGTTGCAGCC+AGG 0.555299 1.1:+61561647 None:intergenic
TGCATTGTTAACTGGGAAAG+TGG 0.558684 1.1:-61561155 MS.gene056056:CDS
AATCCACTACGGTTGGCCGC+AGG 0.559976 1.1:-61558316 MS.gene056056:intron
CTCACTGTATCCTTTCTGGT+GGG 0.560064 1.1:+61559018 None:intergenic
GATAACTCACATTGCTTGGG+AGG 0.562034 1.1:+61559129 None:intergenic
ATATCTTCACTTCTACGACT+TGG 0.562805 1.1:+61557859 None:intergenic
TTTAGATTCAGTCTTTGAGG+TGG 0.563062 1.1:+61557291 None:intergenic
CAAAGTGCGGATGACTTGGA+TGG 0.563076 1.1:-61559935 MS.gene056056:intron
GAAGAATAATCCACTACGGT+TGG 0.564141 1.1:-61558323 MS.gene056056:CDS
ACTTTCCCAGTTAACAATGC+AGG 0.564953 1.1:+61561157 None:intergenic
TCCTTCGATTCCAAGCGTTG+TGG 0.567197 1.1:-61562082 MS.gene056056:CDS
TGGAAGTGTCACATGGGTAA+TGG 0.568237 1.1:+61562011 None:intergenic
ATTGTCGGTCCTTGTTCCAA+AGG 0.568819 1.1:+61559051 None:intergenic
GAATTGATTAAAGTATATGG+TGG 0.569477 1.1:-61560172 MS.gene056056:CDS
TCCACAACGCTTGGAATCGA+AGG 0.570560 1.1:+61562081 None:intergenic
TAAAGCATAGTAGAACATCA+TGG 0.571641 1.1:-61560219 MS.gene056056:CDS
TATATATGTACCCACCAGAA+AGG 0.572245 1.1:-61559028 MS.gene056056:CDS
ATCGAAATCATTAGCTACAC+CGG 0.574129 1.1:+61561792 None:intergenic
GTTTCTTCTTATGATGTGGA+CGG 0.577423 1.1:-61560076 MS.gene056056:CDS
TCAGCCGACTGTCTGCATTG+AGG 0.577541 1.1:-61560505 MS.gene056056:intron
AGACCTGCGGCCAACCGTAG+TGG 0.579404 1.1:+61558313 None:intergenic
AAGATACTTGTAGAATACTT+CGG 0.579525 1.1:-61557690 MS.gene056056:CDS
AAGGCTGCCGCTTATAACGC+AGG 0.580310 1.1:-61558964 MS.gene056056:CDS
TGCTTTGTTTGCAATTGATG+AGG 0.581407 1.1:-61560808 MS.gene056056:CDS
GTCCTTCTTAGATGTAACTT+GGG 0.582146 1.1:+61558655 None:intergenic
TACCCGGAACTAACAGAACT+AGG 0.583428 1.1:-61556320 MS.gene056056:CDS
AAAGCATAGTAGAACATCAT+GGG 0.589015 1.1:-61560218 MS.gene056056:CDS
GGAAGCTAAAGGATATATCA+GGG 0.589070 1.1:-61556628 MS.gene056056:CDS
TCATGATCAAATCCCATTCG+CGG 0.589863 1.1:+61561817 None:intergenic
GATATAAATGTAATGCACTC+AGG 0.592782 1.1:-61560028 MS.gene056056:CDS
CTTCCACATCATCATCATCA+AGG 0.593475 1.1:+61561863 None:intergenic
TCTCTGCAAGTCTGGTGTGA+AGG 0.595301 1.1:-61558983 MS.gene056056:CDS
AATTGATTAAAGTATATGGT+GGG 0.597141 1.1:-61560171 MS.gene056056:CDS
CTCACCTCAGATGATGCAGA+TGG 0.599725 1.1:-61560136 MS.gene056056:CDS
CTCGAAGCAATAAAAGTAGT+GGG 0.600213 1.1:-61562105 MS.gene056056:CDS
GTACATTGTGTTTCTAAATG+GGG 0.602708 1.1:-61560786 MS.gene056056:CDS
TTGTACACAAAATTCACCAC+AGG 0.602837 1.1:+61559155 None:intergenic
GTTTCAGCAAGCTTCTGCAA+CGG 0.604188 1.1:+61560840 None:intergenic
GCTAAAGGATATATCAGGGA+AGG 0.604478 1.1:-61556624 MS.gene056056:CDS
TGCAAACAAAGCAATACCAC+GGG 0.604790 1.1:+61560818 None:intergenic
TTTCCCTCAATGCAGACAGT+CGG 0.608473 1.1:+61560501 None:intergenic
TTCTCCTCATTCTCAGAATG+GGG 0.612620 1.1:-61556209 MS.gene056056:CDS
GTTAGAAGAATAATCCACTA+CGG 0.623578 1.1:-61558327 MS.gene056056:CDS
CATTCTGAGAATGAGGAGAA+CGG 0.627106 1.1:+61556212 None:intergenic
CCTACTACCAAGAAGCTGGA+CGG 0.627834 1.1:-61558125 MS.gene056056:CDS
AAGACTGAATCTAAAAGAGG+AGG 0.628463 1.1:-61557283 MS.gene056056:CDS
AAATGTTCAGATAAAATACC+CGG 0.629923 1.1:-61556336 MS.gene056056:CDS
CCATGAAGCGTAAATTAGGT+CGG 0.630557 1.1:+61560333 None:intergenic
TCATACCCCTGCGTTATAAG+CGG 0.630837 1.1:+61558957 None:intergenic
TGATGATGTGGAAGAGCATG+AGG 0.631721 1.1:-61561854 MS.gene056056:CDS
TTTGTCCAGAGACTATCCTA+AGG 0.634428 1.1:-61560982 MS.gene056056:intron
AAGGCCATCTGCATCATCTG+AGG 0.634518 1.1:+61560132 None:intergenic
AGGATAGAAAACTAGGAGAG+AGG 0.636053 1.1:-61556863 MS.gene056056:CDS
ACTGATATACTGTGGTGGAG+AGG 0.640376 1.1:-61556666 MS.gene056056:CDS
CAGAAGCTTGCTGAAACCCG+TGG 0.645472 1.1:-61560834 MS.gene056056:CDS
GTTGAAAAGAAAGCAATGAG+AGG 0.646039 1.1:-61561025 MS.gene056056:CDS
TCGATGTTGCATCTGATTGG+GGG 0.651550 1.1:-61561774 MS.gene056056:CDS
AAGCACCAGAGCTAATGGAA+AGG 0.652085 1.1:+61560113 None:intergenic
AGGCTGCCGCTTATAACGCA+GGG 0.652548 1.1:-61558963 MS.gene056056:CDS
TTGCAAACAAAGCAATACCA+CGG 0.658635 1.1:+61560817 None:intergenic
TAACCACTGATATACTGTGG+TGG 0.659386 1.1:-61556671 MS.gene056056:CDS
TGTCCTTGATGATGATGATG+TGG 0.664053 1.1:-61561866 MS.gene056056:CDS
GTAATGCACTCAGGAAACAC+CGG 0.665620 1.1:-61560019 MS.gene056056:CDS
CCAAGATGACTGTGATGATG+GGG 0.667414 1.1:-61560050 MS.gene056056:CDS
AGTGTCACATGGGTAATGGT+TGG 0.668149 1.1:+61562015 None:intergenic
TATCAGGGAAGGAGATGACA+AGG 0.676549 1.1:-61556613 MS.gene056056:intron
ATTGTTAACTGGGAAAGTGG+TGG 0.681306 1.1:-61561152 MS.gene056056:CDS
TCTCCACCACAGTATATCAG+TGG 0.686584 1.1:+61556668 None:intergenic
ACTTGTAGAATACTTCGGAG+AGG 0.689514 1.1:-61557685 MS.gene056056:CDS
CCTGATTTGAGGACTTCTCG+GGG 0.692396 1.1:-61556065 MS.gene056056:CDS
ATTACTTGGAAGTGTCACAT+GGG 0.693345 1.1:+61562005 None:intergenic
TCTTAACCACTGATATACTG+TGG 0.694390 1.1:-61556674 MS.gene056056:CDS
TCGATAGAAATCCAACAAAG+CGG 0.694722 1.1:-61556133 MS.gene056056:CDS
GGCTGCCGCTTATAACGCAG+GGG 0.706588 1.1:-61558962 MS.gene056056:intron
TGTTGATGTCTTTCAAAGTG+CGG 0.708375 1.1:-61559948 MS.gene056056:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATTGAAAATAAAGA+TGG + chr1.1:61559381-61559400 None:intergenic 10.0%
!! CCAAAAAATAAAATAAATAA+TGG + chr1.1:61558773-61558792 None:intergenic 10.0%
!!! AAAAGAATTTTTTTAAAACT+TGG + chr1.1:61560021-61560040 None:intergenic 10.0%
!!! AAAGAATTTTTTTAAAACTT+GGG + chr1.1:61560020-61560039 None:intergenic 10.0%
!!! AATTTTAATATCAATATACA+AGG + chr1.1:61561656-61561675 None:intergenic 10.0%
!!! ATCTTTATTTTCAATTATTT+TGG - chr1.1:61559380-61559399 MS.gene056056:intron 10.0%
!!! ATTACATGTAAAAATATTTT+AGG + chr1.1:61560051-61560070 None:intergenic 10.0%
!!! CCATTATTTATTTTATTTTT+TGG - chr1.1:61558770-61558789 MS.gene056056:intron 10.0%
!! AAAATATTAGACATACATTT+CGG + chr1.1:61560988-61561007 None:intergenic 15.0%
!! AAAGTTTCAAAATGATAAAT+TGG - chr1.1:61561165-61561184 MS.gene056056:CDS 15.0%
!! ATAAACAATGAATAAATAGA+AGG + chr1.1:61557494-61557513 None:intergenic 15.0%
!! ATGGTTAATAAATAATAAGT+TGG - chr1.1:61556816-61556835 MS.gene056056:intron 15.0%
!! ATTTAACACTAACATAATAT+CGG + chr1.1:61560454-61560473 None:intergenic 15.0%
!! GAGTACATATATTAATATTA+GGG - chr1.1:61558465-61558484 MS.gene056056:intron 15.0%
!! TAAACAATGAATAAATAGAA+GGG + chr1.1:61557493-61557512 None:intergenic 15.0%
!! TGAGTACATATATTAATATT+AGG - chr1.1:61558464-61558483 MS.gene056056:intron 15.0%
!! TGGTTAATAAATAATAAGTT+GGG - chr1.1:61556817-61556836 MS.gene056056:intron 15.0%
!!! AAATTCAACATCTTTTTAAA+TGG - chr1.1:61556638-61556657 MS.gene056056:CDS 15.0%
!!! GTTGAATTTAAAATACAAAA+AGG + chr1.1:61560684-61560703 None:intergenic 15.0%
!!! TGTAGTATAATTTTTATCTT+GGG - chr1.1:61560159-61560178 MS.gene056056:CDS 15.0%
!!! TGTCATTTTTTTTTAACATT+CGG - chr1.1:61558821-61558840 MS.gene056056:intron 15.0%
!!! TTTATATTTTGAATGAATCA+GGG - chr1.1:61559318-61559337 MS.gene056056:intron 15.0%
!!! TTTTATTATTTGAATTAACG+TGG - chr1.1:61559727-61559746 MS.gene056056:intron 15.0%
!! AAACATATCATACTTACAAA+TGG + chr1.1:61557668-61557687 None:intergenic 20.0%
!! AAATATTAGACATACATTTC+GGG + chr1.1:61560987-61561006 None:intergenic 20.0%
!! AAGAAATTGAACTCATAAAT+TGG + chr1.1:61559529-61559548 None:intergenic 20.0%
!! AATTGATTAAAGTATATGGT+GGG - chr1.1:61558043-61558062 MS.gene056056:intron 20.0%
!! AGTCATTTATTAATTCATGT+TGG - chr1.1:61560836-61560855 MS.gene056056:CDS 20.0%
!! ATAAACAAGGTAATTTGATA+CGG + chr1.1:61560714-61560733 None:intergenic 20.0%
!! ATTATCAAAAAACACATTTG+AGG - chr1.1:61558637-61558656 MS.gene056056:CDS 20.0%
!! ATTTAAAAAGTTGTCGAATT+TGG - chr1.1:61556904-61556923 MS.gene056056:CDS 20.0%
!! CAATTATAATTGATTATGTC+AGG + chr1.1:61559947-61559966 None:intergenic 20.0%
!! CATGAATTGATTAAAGTATA+TGG - chr1.1:61558039-61558058 MS.gene056056:intron 20.0%
!! TAATATCAATATACAAGGAT+AGG + chr1.1:61561651-61561670 None:intergenic 20.0%
!! TAGAATAAATACACAAACAA+AGG + chr1.1:61557639-61557658 None:intergenic 20.0%
!!! AATACTTCAATTTTATATGC+TGG - chr1.1:61559766-61559785 MS.gene056056:intron 20.0%
!!! AATTTTTGGTACAATAAACA+AGG + chr1.1:61560727-61560746 None:intergenic 20.0%
!!! ATTAGGGTAAACAATTATTT+TGG - chr1.1:61558481-61558500 MS.gene056056:intron 20.0%
!!! CATGTAATTTTATTAGAGTT+TGG - chr1.1:61560063-61560082 MS.gene056056:CDS 20.0%
!!! CTGTAGTATAATTTTTATCT+TGG - chr1.1:61560158-61560177 MS.gene056056:CDS 20.0%
!!! GTTTATATTTTGAATGAATC+AGG - chr1.1:61559317-61559336 MS.gene056056:intron 20.0%
!!! TGTGTTTTTTGATAATCTTT+TGG + chr1.1:61558633-61558652 None:intergenic 20.0%
! AAAAAGACTCAAAATGCTTA+AGG - chr1.1:61559138-61559157 MS.gene056056:CDS 25.0%
! AAATGTTCAGATAAAATACC+CGG - chr1.1:61561878-61561897 MS.gene056056:CDS 25.0%
! AAGATACTTGTAGAATACTT+CGG - chr1.1:61560524-61560543 MS.gene056056:intron 25.0%
! AATTTCAGAAATGGTTGAAA+TGG - chr1.1:61556066-61556085 MS.gene056056:CDS 25.0%
! AATTTGAACACTAGAAATCT+AGG - chr1.1:61556775-61556794 MS.gene056056:intron 25.0%
! AGGTGAGTAATAGATATATT+TGG + chr1.1:61556846-61556865 None:intergenic 25.0%
! ATAAGCTAATGCAATAAACA+AGG + chr1.1:61560751-61560770 None:intergenic 25.0%
! ATAATAGAACAAAACCCATT+TGG + chr1.1:61558903-61558922 None:intergenic 25.0%
! ATATAGAACTGGTTGAAAAT+GGG + chr1.1:61560305-61560324 None:intergenic 25.0%
! ATGGATATCATCATTATATG+AGG + chr1.1:61561321-61561340 None:intergenic 25.0%
! ATTTCAGAAATGGTTGAAAT+GGG - chr1.1:61556067-61556086 MS.gene056056:CDS 25.0%
! CCAACAAATCAATTAATCTT+AGG + chr1.1:61557581-61557600 None:intergenic 25.0%
! CTACTTATTATGTGAATCAA+AGG + chr1.1:61560243-61560262 None:intergenic 25.0%
! CTTTGATTCACATAATAAGT+AGG - chr1.1:61560241-61560260 MS.gene056056:intron 25.0%
! GAATTGATTAAAGTATATGG+TGG - chr1.1:61558042-61558061 MS.gene056056:intron 25.0%
! GGTTAATTAAGTCAAGTTAA+TGG + chr1.1:61556732-61556751 None:intergenic 25.0%
! GTTAATCGCATTTAAATCTA+TGG - chr1.1:61556797-61556816 MS.gene056056:intron 25.0%
! GTTTCATGAAAATACTTTAG+AGG - chr1.1:61559591-61559610 MS.gene056056:intron 25.0%
! TAATAGAACAAAACCCATTT+GGG + chr1.1:61558902-61558921 None:intergenic 25.0%
! TACTACTGGATTGAAAATAA+TGG + chr1.1:61556300-61556319 None:intergenic 25.0%
! TATCTTGTGGTTGTATTTAT+TGG - chr1.1:61560796-61560815 MS.gene056056:CDS 25.0%
! TATTTGAAAAAAAAGACCTG+CGG + chr1.1:61559917-61559936 None:intergenic 25.0%
! TATTTGTATATGTGCAGATA+TGG - chr1.1:61560476-61560495 MS.gene056056:CDS 25.0%
! TCACAATGCAATAAATCAAA+CGG + chr1.1:61559497-61559516 None:intergenic 25.0%
! TGCTTAAAGCTAACAAAATA+TGG - chr1.1:61557123-61557142 MS.gene056056:intron 25.0%
!! ATCATTGAAAAGTTTTCAGA+AGG - chr1.1:61556504-61556523 MS.gene056056:intron 25.0%
!! ATGAAAATACTTTAGAGGTA+TGG - chr1.1:61559596-61559615 MS.gene056056:intron 25.0%
!! GCAATAAACAAGGTAATTTT+TGG + chr1.1:61560741-61560760 None:intergenic 25.0%
!! GTCTCTTTAATTAGTCATTT+TGG + chr1.1:61558664-61558683 None:intergenic 25.0%
!! TATTCTTTTGCTCTTGTATT+TGG - chr1.1:61560277-61560296 MS.gene056056:intron 25.0%
!! TGTTTATTGCATTAGCTTAT+CGG - chr1.1:61560751-61560770 MS.gene056056:intron 25.0%
!! TTCAAGCTTGTTTAATTAGA+TGG - chr1.1:61559292-61559311 MS.gene056056:intron 25.0%
!! TTCTTTTCAACAGTATTATC+AGG + chr1.1:61557180-61557199 None:intergenic 25.0%
!! TTTTACTGCAAACTATAATG+CGG - chr1.1:61560960-61560979 MS.gene056056:intron 25.0%
!! TTTTATTGCTTCGAGAATTT+GGG + chr1.1:61556104-61556123 None:intergenic 25.0%
!!! CCTAAGATTAATTGATTTGT+TGG - chr1.1:61557578-61557597 MS.gene056056:intron 25.0%
!!! CTATTCATAGTGTTACTTTT+TGG - chr1.1:61557008-61557027 MS.gene056056:intron 25.0%
!!! GTATTTTAAATTCAACCAGT+AGG - chr1.1:61560688-61560707 MS.gene056056:intron 25.0%
!!! TAAACAAATGCTTTGTTTTG+TGG - chr1.1:61561189-61561208 MS.gene056056:intron 25.0%
!!! TCTTCTTTTTTTATGATTGC+CGG + chr1.1:61558217-61558236 None:intergenic 25.0%
!!! TGTTTGTGTTTCTATTTTTC+TGG - chr1.1:61561140-61561159 MS.gene056056:CDS 25.0%
AAAATAACAAACCTGTAAGC+TGG + chr1.1:61557467-61557486 None:intergenic 30.0%
AAAATTGACAATTGAGTTCC+TGG - chr1.1:61558236-61558255 MS.gene056056:intron 30.0%
AAAGCATAGTAGAACATCAT+GGG - chr1.1:61557996-61558015 MS.gene056056:intron 30.0%
AAATTGTAAGAAACACAGTG+GGG + chr1.1:61558442-61558461 None:intergenic 30.0%
AATAACGAAAAACGCATTTG+AGG - chr1.1:61558606-61558625 MS.gene056056:intron 30.0%
AATAGAAACACAAACACACA+TGG + chr1.1:61561136-61561155 None:intergenic 30.0%
AATCCAGTAGTAAAGTCAAT+GGG - chr1.1:61556308-61556327 MS.gene056056:CDS 30.0%
AATTCCAAGGATAGAAAACT+AGG - chr1.1:61561344-61561363 MS.gene056056:intron 30.0%
ACAAATTGTAAGAAACACAG+TGG + chr1.1:61558444-61558463 None:intergenic 30.0%
ACGTGGTTAACAAAATCAAA+AGG + chr1.1:61556866-61556885 None:intergenic 30.0%
ACTAATTAAAGAGACACTTG+AGG - chr1.1:61558669-61558688 MS.gene056056:intron 30.0%
ACTTGACTTAATTAACCACA+AGG - chr1.1:61556735-61556754 MS.gene056056:intron 30.0%
AGATTCCTAATTGTATGTGT+TGG - chr1.1:61559023-61559042 MS.gene056056:CDS 30.0%
ATAGAAAGTTTCTTCAGTCA+TGG + chr1.1:61561937-61561956 None:intergenic 30.0%
ATCATTATATGAGGAATCCA+TGG + chr1.1:61561312-61561331 None:intergenic 30.0%
CAAATTGTAAGAAACACAGT+GGG + chr1.1:61558443-61558462 None:intergenic 30.0%
CATATAGAACTGGTTGAAAA+TGG + chr1.1:61560306-61560325 None:intergenic 30.0%
CTCAGTTCAGTACAAATAAT+TGG - chr1.1:61558322-61558341 MS.gene056056:CDS 30.0%
CTGTGTATGATCATCATATA+TGG + chr1.1:61561510-61561529 None:intergenic 30.0%
GAAATTCGATATACCTGTAA+TGG - chr1.1:61557764-61557783 MS.gene056056:intron 30.0%
GATATAAATGTAATGCACTC+AGG - chr1.1:61558186-61558205 MS.gene056056:intron 30.0%
GCAAAATTAACTATTGAGCT+TGG + chr1.1:61559432-61559451 None:intergenic 30.0%
GTAATCAAAGGATTATCTTG+TGG - chr1.1:61560783-61560802 MS.gene056056:CDS 30.0%
GTGGGTACATATATAATTGT+CGG + chr1.1:61559181-61559200 None:intergenic 30.0%
GTTAGAAGAATAATCCACTA+CGG - chr1.1:61559887-61559906 MS.gene056056:intron 30.0%
TAAAGCATAGTAGAACATCA+TGG - chr1.1:61557995-61558014 MS.gene056056:intron 30.0%
TAAGATGTATGCACACTAAT+TGG + chr1.1:61557520-61557539 None:intergenic 30.0%
TACAGGTATATCGAATTTCA+AGG + chr1.1:61557763-61557782 None:intergenic 30.0%
TAGGTTCATCATGAAAATGA+CGG + chr1.1:61560870-61560889 None:intergenic 30.0%
TATAGAACTGGTTGAAAATG+GGG + chr1.1:61560304-61560323 None:intergenic 30.0%
TATGCTGGATTCAGAAATTT+AGG - chr1.1:61559781-61559800 MS.gene056056:intron 30.0%
TCAAAGACTGAATCTAAAAG+AGG - chr1.1:61560928-61560947 MS.gene056056:intron 30.0%
TGATATCCATTTCAATTCCA+AGG - chr1.1:61561331-61561350 MS.gene056056:intron 30.0%
TTACAAACAAAAGAGACACT+TGG + chr1.1:61558569-61558588 None:intergenic 30.0%
TTATAGTTGTCTATGCATGT+TGG - chr1.1:61558961-61558980 MS.gene056056:intron 30.0%
TTCTATCCTTGGAATTGAAA+TGG + chr1.1:61561340-61561359 None:intergenic 30.0%
TTTACTGCAAACTATAATGC+GGG - chr1.1:61560961-61560980 MS.gene056056:intron 30.0%
! ACGTCTAAAATATTCTGTTC+AGG + chr1.1:61559630-61559649 None:intergenic 30.0%
! AGGTACATTGTGTTTCTAAA+TGG - chr1.1:61557426-61557445 MS.gene056056:intron 30.0%
! CTTTTATTGCTTCGAGAATT+TGG + chr1.1:61556105-61556124 None:intergenic 30.0%
! CTTTTTGTTCTTCTCATGTT+TGG - chr1.1:61557317-61557336 MS.gene056056:intron 30.0%
! GAAAAATGAAACCTGATTTG+AGG - chr1.1:61562138-61562157 MS.gene056056:CDS 30.0%
! GACGTTAGTTAGAAGTATAA+GGG - chr1.1:61561385-61561404 MS.gene056056:intron 30.0%
! GGTACATTGTGTTTCTAAAT+GGG - chr1.1:61557427-61557446 MS.gene056056:intron 30.0%
! GTACATTGTGTTTCTAAATG+GGG - chr1.1:61557428-61557447 MS.gene056056:intron 30.0%
! TCTTTTAGATTCAGTCTTTG+AGG + chr1.1:61560929-61560948 None:intergenic 30.0%
!! AGCATTTTGAGTCTTTTTTC+TGG + chr1.1:61559136-61559155 None:intergenic 30.0%
!! TAATGGACAAACAACCATTT+TGG + chr1.1:61558756-61558775 None:intergenic 30.0%
!! TATTGGTAGTGTGTTGAATT+TGG - chr1.1:61560813-61560832 MS.gene056056:CDS 30.0%
!! TTGAGGATATGTTTGCTATT+TGG - chr1.1:61558686-61558705 MS.gene056056:intron 30.0%
!! TTTGCTATTTGGATACATTC+AGG - chr1.1:61558697-61558716 MS.gene056056:intron 30.0%
!!! AGTCTTTTTTCTGGTTTTGT+AGG + chr1.1:61559127-61559146 None:intergenic 30.0%
!!! ATTTTGTTGCAGAAGCATTT+TGG - chr1.1:61556475-61556494 MS.gene056056:intron 30.0%
!!! GTCATGAATGCTATTTTTTC+AGG - chr1.1:61561274-61561293 MS.gene056056:intron 30.0%
AACTATGCTGTAAAAGTCCA+AGG + chr1.1:61561086-61561105 None:intergenic 35.0%
AAGACTGAATCTAAAAGAGG+AGG - chr1.1:61560931-61560950 MS.gene056056:intron 35.0%
AATTCTCACTGTATCCTTTC+TGG + chr1.1:61559203-61559222 None:intergenic 35.0%
AATTGTAAGAAACACAGTGG+GGG + chr1.1:61558441-61558460 None:intergenic 35.0%
ACTATCCTAAGGTATGGTTA+GGG - chr1.1:61557243-61557262 MS.gene056056:intron 35.0%
ACTATGCTGTAAAAGTCCAA+GGG + chr1.1:61561085-61561104 None:intergenic 35.0%
AGACGAAGATACATTCATCA+TGG + chr1.1:61560425-61560444 None:intergenic 35.0%
AGATTCCTGCATTGTTAACT+GGG - chr1.1:61557052-61557071 MS.gene056056:intron 35.0%
AGTCCTTCTTAGATGTAACT+TGG + chr1.1:61559563-61559582 None:intergenic 35.0%
ATAGAACTGGTTGAAAATGG+GGG + chr1.1:61560303-61560322 None:intergenic 35.0%
ATATCTTCACTTCTACGACT+TGG + chr1.1:61560358-61560377 None:intergenic 35.0%
ATCGAAATCATTAGCTACAC+CGG + chr1.1:61556425-61556444 None:intergenic 35.0%
ATGGGATTTGATCATGATTC+CGG - chr1.1:61556403-61556422 MS.gene056056:intron 35.0%
ATGTGACACTTCCAAGTAAT+GGG - chr1.1:61556212-61556231 MS.gene056056:CDS 35.0%
ATTGTACAGTGGAAAACTTG+AGG + chr1.1:61561851-61561870 None:intergenic 35.0%
ATTTCGATGTTGCATCTGAT+TGG - chr1.1:61556437-61556456 MS.gene056056:intron 35.0%
ATTTGTCTGCAATTGTACAG+TGG + chr1.1:61561862-61561881 None:intergenic 35.0%
CAAGTAACATATCTGCTTCA+GGG + chr1.1:61561965-61561984 None:intergenic 35.0%
CAATCCAGTAGTAAAGTCAA+TGG - chr1.1:61556307-61556326 MS.gene056056:CDS 35.0%
CACATATTCAAAGGCCAAAA+TGG - chr1.1:61558739-61558758 MS.gene056056:intron 35.0%
CAGTGTTTCTTCTTATGATG+TGG - chr1.1:61558134-61558153 MS.gene056056:CDS 35.0%
CTCGAAGCAATAAAAGTAGT+GGG - chr1.1:61556109-61556128 MS.gene056056:CDS 35.0%
GCAAGCTGATAATTATACAC+AGG + chr1.1:61561421-61561440 None:intergenic 35.0%
GCAATAAATCAAACGGTGTT+AGG + chr1.1:61559490-61559509 None:intergenic 35.0%
GGAAGCTAAAGGATATATCA+GGG - chr1.1:61561586-61561605 MS.gene056056:intron 35.0%
GGAGCAAGTAATTTCAGAAA+TGG - chr1.1:61556057-61556076 MS.gene056056:CDS 35.0%
GGATTCCAACAACAAATCTT+CGG - chr1.1:61556036-61556055 MS.gene056056:CDS 35.0%
GGTTAAAGAAGTTCAATGAG+TGG - chr1.1:61556672-61556691 MS.gene056056:CDS 35.0%
GTCCTTCTTAGATGTAACTT+GGG + chr1.1:61559562-61559581 None:intergenic 35.0%
GTTGAAAAGAAAGCAATGAG+AGG - chr1.1:61557189-61557208 MS.gene056056:intron 35.0%
GTTTCTTCTTATGATGTGGA+CGG - chr1.1:61558138-61558157 MS.gene056056:CDS 35.0%
TAGCTTCCAAAATTCGAGTA+AGG + chr1.1:61561574-61561593 None:intergenic 35.0%
TATACCTAAATACTGACCCT+TGG - chr1.1:61561066-61561085 MS.gene056056:CDS 35.0%
TATATATGTACCCACCAGAA+AGG - chr1.1:61559186-61559205 MS.gene056056:intron 35.0%
TATGTCAAGTTTGGTCTCAA+TGG - chr1.1:61560578-61560597 MS.gene056056:intron 35.0%
TCAAGTAACATATCTGCTTC+AGG + chr1.1:61561966-61561985 None:intergenic 35.0%
TCAGATAACTCACATTGCTT+GGG + chr1.1:61559091-61559110 None:intergenic 35.0%
TCATGAAAATGACGGTGTAA+AGG + chr1.1:61560862-61560881 None:intergenic 35.0%
TCATGTTGTCTGATTGTTTC+AGG - chr1.1:61560395-61560414 MS.gene056056:CDS 35.0%
TCGATAGAAATCCAACAAAG+CGG - chr1.1:61562081-61562100 MS.gene056056:CDS 35.0%
TCGTGCATTAGGCTTATTAA+AGG + chr1.1:61557099-61557118 None:intergenic 35.0%
TCTCGAAGCAATAAAAGTAG+TGG - chr1.1:61556108-61556127 MS.gene056056:CDS 35.0%
TCTTAACCACTGATATACTG+TGG - chr1.1:61561540-61561559 MS.gene056056:intron 35.0%
TGGAAGCTAAAGGATATATC+AGG - chr1.1:61561585-61561604 MS.gene056056:intron 35.0%
TGTCTCTTGTATGTCAAGTT+TGG - chr1.1:61560569-61560588 MS.gene056056:intron 35.0%
TGTTGATGTCTTTCAAAGTG+CGG - chr1.1:61558266-61558285 MS.gene056056:intron 35.0%
TTGAGGGAAAATTTCACTAC+TGG - chr1.1:61557726-61557745 MS.gene056056:intron 35.0%
TTGCAAACAAAGCAATACCA+CGG + chr1.1:61557400-61557419 None:intergenic 35.0%
TTGTACACAAAATTCACCAC+AGG + chr1.1:61559062-61559081 None:intergenic 35.0%
TTTCGATGTTGCATCTGATT+GGG - chr1.1:61556438-61556457 MS.gene056056:intron 35.0%
TTTGTGGAATGAAACTGTCA+TGG - chr1.1:61561205-61561224 MS.gene056056:intron 35.0%
! AGACATCAACATCATTTTCC+AGG + chr1.1:61558257-61558276 None:intergenic 35.0%
! ATACTTTAGAGGTATGGATC+TGG - chr1.1:61559602-61559621 MS.gene056056:intron 35.0%
! CGACGTTAGTTAGAAGTATA+AGG - chr1.1:61561384-61561403 MS.gene056056:intron 35.0%
! CGGCTTTCTTTTGTAATCAA+AGG - chr1.1:61560771-61560790 MS.gene056056:CDS 35.0%
! GCTTGTGTTTTATCATCTTC+AGG - chr1.1:61559817-61559836 MS.gene056056:intron 35.0%
! GGAAGTGAGAGTATAAAACA+TGG + chr1.1:61559999-61560018 None:intergenic 35.0%
! TCCAGGAATTTTATGTAGTG+AGG + chr1.1:61558987-61559006 None:intergenic 35.0%
! TTTAGAGCTTTCCCATTACT+TGG + chr1.1:61556226-61556245 None:intergenic 35.0%
! TTTAGATTCAGTCTTTGAGG+TGG + chr1.1:61560926-61560945 None:intergenic 35.0%
!! AAACCTAGTTCTGTTAGTTC+CGG + chr1.1:61561900-61561919 None:intergenic 35.0%
!! ACTCGAATTTTGGAAGCTAA+AGG - chr1.1:61561575-61561594 MS.gene056056:intron 35.0%
!! ATTACTTGGAAGTGTCACAT+GGG + chr1.1:61556212-61556231 None:intergenic 35.0%
!! TGCTTTGTTTGCAATTGATG+AGG - chr1.1:61557406-61557425 MS.gene056056:intron 35.0%
!! TTAAGCATTGATCGTGCATT+AGG + chr1.1:61557110-61557129 None:intergenic 35.0%
!! TTGCAGTTTTGATACATCCA+GGG + chr1.1:61558539-61558558 None:intergenic 35.0%
!! TTTCCCATTGACTTTACTAC+TGG + chr1.1:61556314-61556333 None:intergenic 35.0%
!! TTTGCAGTTTTGATACATCC+AGG + chr1.1:61558540-61558559 None:intergenic 35.0%
!! TTTTGGCCTTTGAATATGTG+AGG + chr1.1:61558739-61558758 None:intergenic 35.0%
!!! ACTACTCGCTCTTTGTTTTT+TGG - chr1.1:61559674-61559693 MS.gene056056:intron 35.0%
!!! CATAGTGTTACTTTTTGGCA+GGG - chr1.1:61557013-61557032 MS.gene056056:intron 35.0%
!!! CTACTCGCTCTTTGTTTTTT+GGG - chr1.1:61559675-61559694 MS.gene056056:intron 35.0%
!!! TACTCGCTCTTTGTTTTTTG+GGG - chr1.1:61559676-61559695 MS.gene056056:intron 35.0%
!!! TCATAGTGTTACTTTTTGGC+AGG - chr1.1:61557012-61557031 MS.gene056056:intron 35.0%
AACACAAACACACATGGAGT+AGG + chr1.1:61561130-61561149 None:intergenic 40.0%
AACCAAGATGACTGTGATGA+TGG - chr1.1:61558162-61558181 MS.gene056056:intron 40.0%
AAGTCCAAGGGTCAGTATTT+AGG + chr1.1:61561073-61561092 None:intergenic 40.0%
ACAGCACCTCACATATTCAA+AGG - chr1.1:61558730-61558749 MS.gene056056:intron 40.0%
ACCAAGATGACTGTGATGAT+GGG - chr1.1:61558163-61558182 MS.gene056056:intron 40.0%
ACGAGCCAACACATACAATT+AGG + chr1.1:61559031-61559050 None:intergenic 40.0%
ACTTGTAGAATACTTCGGAG+AGG - chr1.1:61560529-61560548 MS.gene056056:intron 40.0%
ACTTTCCCAGTTAACAATGC+AGG + chr1.1:61557060-61557079 None:intergenic 40.0%
AGAACAAAACCCATTTGGGT+TGG + chr1.1:61558898-61558917 None:intergenic 40.0%
AGATGCGATGTGTGCAATAA+TGG - chr1.1:61560899-61560918 MS.gene056056:intron 40.0%
AGGAATCTTAGATGCAGTGA+CGG + chr1.1:61559011-61559030 None:intergenic 40.0%
AGGATAGAAAACTAGGAGAG+AGG - chr1.1:61561351-61561370 MS.gene056056:intron 40.0%
AGTTGAATTACCAATGCGCA+CGG + chr1.1:61561819-61561838 None:intergenic 40.0%
ATGTTACACTACCTCCTTGT+AGG + chr1.1:61561763-61561782 None:intergenic 40.0%
ATTGTAAGAAACACAGTGGG+GGG + chr1.1:61558440-61558459 None:intergenic 40.0%
ATTGTTAACTGGGAAAGTGG+TGG - chr1.1:61557062-61557081 MS.gene056056:intron 40.0%
CAAAATGCTTAAGGAGCCTT+TGG - chr1.1:61559147-61559166 MS.gene056056:CDS 40.0%
CAGATTCCTGCATTGTTAAC+TGG - chr1.1:61557051-61557070 MS.gene056056:intron 40.0%
CATGTGACACTTCCAAGTAA+TGG - chr1.1:61556211-61556230 MS.gene056056:CDS 40.0%
CCATGAAGCGTAAATTAGGT+CGG + chr1.1:61557884-61557903 None:intergenic 40.0%
CTAACTAACGTCGTAAGACT+TGG + chr1.1:61561377-61561396 None:intergenic 40.0%
CTAGTAGTAACATCTAAGCC+GGG - chr1.1:61558381-61558400 MS.gene056056:intron 40.0%
CTCACCATGAAGCGTAAATT+AGG + chr1.1:61557888-61557907 None:intergenic 40.0%
CTCAGATAACTCACATTGCT+TGG + chr1.1:61559092-61559111 None:intergenic 40.0%
CTCCTCTTTCTTTGCTTTCT+GGG + chr1.1:61562113-61562132 None:intergenic 40.0%
CTTCCACATCATCATCATCA+AGG + chr1.1:61556354-61556373 None:intergenic 40.0%
GAAGAATAATCCACTACGGT+TGG - chr1.1:61559891-61559910 MS.gene056056:intron 40.0%
GACACAAATGCAAGTGTAGT+TGG + chr1.1:61561032-61561051 None:intergenic 40.0%
GACTATCCTAAGGTATGGTT+AGG - chr1.1:61557242-61557261 MS.gene056056:intron 40.0%
GAGAATGAAGAGAGCAAGAA+AGG + chr1.1:61560195-61560214 None:intergenic 40.0%
GCCTCACTACATAAAATTCC+TGG - chr1.1:61558983-61559002 MS.gene056056:CDS 40.0%
GCTAAAGGATATATCAGGGA+AGG - chr1.1:61561590-61561609 MS.gene056056:intron 40.0%
GCTAGTAGTAACATCTAAGC+CGG - chr1.1:61558380-61558399 MS.gene056056:intron 40.0%
GGAACTAACAGAACTAGGTT+TGG - chr1.1:61561899-61561918 MS.gene056056:CDS 40.0%
GTTCTCCTCATTCTCAGAAT+GGG - chr1.1:61562004-61562023 MS.gene056056:CDS 40.0%
GTTGTCGAATTTGGTTGTTC+TGG - chr1.1:61556913-61556932 MS.gene056056:CDS 40.0%
TAACCACTGATATACTGTGG+TGG - chr1.1:61561543-61561562 MS.gene056056:intron 40.0%
TAGTAGTAACATCTAAGCCG+GGG - chr1.1:61558382-61558401 MS.gene056056:intron 40.0%
TCATAGAGATTGTCTTGTCC+TGG - chr1.1:61556549-61556568 MS.gene056056:intron 40.0%
TCATGATCAAATCCCATTCG+CGG + chr1.1:61556400-61556419 None:intergenic 40.0%
TCATTCTCAGAATGGGGAAA+AGG - chr1.1:61562011-61562030 MS.gene056056:CDS 40.0%
TCCTCTTTCTTTGCTTTCTG+GGG + chr1.1:61562112-61562131 None:intergenic 40.0%
TCTCCTCTTTCTTTGCTTTC+TGG + chr1.1:61562114-61562133 None:intergenic 40.0%
TGCAAACAAAGCAATACCAC+GGG + chr1.1:61557399-61557418 None:intergenic 40.0%
TGCATTCTGTACTGCATAAG+TGG - chr1.1:61561237-61561256 MS.gene056056:intron 40.0%
TGCATTGTTAACTGGGAAAG+TGG - chr1.1:61557059-61557078 MS.gene056056:intron 40.0%
TGCCCAAGTTACATCTAAGA+AGG - chr1.1:61559557-61559576 MS.gene056056:intron 40.0%
TGGTTCAACGAAATCTGCAA+TGG + chr1.1:61559412-61559431 None:intergenic 40.0%
TTCGATGTTGCATCTGATTG+GGG - chr1.1:61556439-61556458 MS.gene056056:intron 40.0%
TTCTCCTCATTCTCAGAATG+GGG - chr1.1:61562005-61562024 MS.gene056056:CDS 40.0%
TTTGTCCAGAGACTATCCTA+AGG - chr1.1:61557232-61557251 MS.gene056056:intron 40.0%
! AACCTGATTTGAGGACTTCT+CGG - chr1.1:61562147-61562166 MS.gene056056:CDS 40.0%
! AGTTAGAAGTATAAGGGAGC+AGG - chr1.1:61561391-61561410 MS.gene056056:intron 40.0%
! ATGATTTTCGTCCAGCTTAC+AGG - chr1.1:61557453-61557472 MS.gene056056:intron 40.0%
! CATTCTGAGAATGAGGAGAA+CGG + chr1.1:61562005-61562024 None:intergenic 40.0%
! GCAACAATTGCGTTTGGAAT+GGG - chr1.1:61559848-61559867 MS.gene056056:intron 40.0%
! GCAGTGAATTGGAAGTGTAA+TGG + chr1.1:61557963-61557982 None:intergenic 40.0%
! GTGAATTGGAAGTGTAATGG+AGG + chr1.1:61557960-61557979 None:intergenic 40.0%
! TGGAAGTGTAATGGAGGTTA+TGG + chr1.1:61557954-61557973 None:intergenic 40.0%
! TTTTAAATGGTTCGCACACG+TGG - chr1.1:61556651-61556670 MS.gene056056:CDS 40.0%
!! AACCTAGTTCTGTTAGTTCC+GGG + chr1.1:61561899-61561918 None:intergenic 40.0%
!! CATTACTTGGAAGTGTCACA+TGG + chr1.1:61556213-61556232 None:intergenic 40.0%
!! CTCTCCTAGTTTTCTATCCT+TGG + chr1.1:61561351-61561370 None:intergenic 40.0%
!! TCTCGACTTTGGAACTTGAA+TGG + chr1.1:61556269-61556288 None:intergenic 40.0%
!! TGTCCTTGATGATGATGATG+TGG - chr1.1:61556348-61556367 MS.gene056056:intron 40.0%
!! TTGCTCCGAAGATTTGTTGT+TGG + chr1.1:61556044-61556063 None:intergenic 40.0%
!! TTTTCCCCATTCTGAGAATG+AGG + chr1.1:61562012-61562031 None:intergenic 40.0%
!!! ACTCGCTCTTTGTTTTTTGG+GGG - chr1.1:61559677-61559696 MS.gene056056:intron 40.0%
!!! TCTTTGTTTTTTGGGGGTGA+GGG - chr1.1:61559683-61559702 MS.gene056056:intron 40.0%
!!! TTTTTTCTAGACGCTGACGA+CGG + chr1.1:61562055-61562074 None:intergenic 40.0%
AAAGAGTCCTTACCGCGAAT+GGG - chr1.1:61556385-61556404 MS.gene056056:intron 45.0%
AACACACATGGAGTAGGATG+AGG + chr1.1:61561124-61561143 None:intergenic 45.0%
AAGATATGCTCCACAACGCT+TGG + chr1.1:61556145-61556164 None:intergenic 45.0%
AAGCACCAGAGCTAATGGAA+AGG + chr1.1:61558104-61558123 None:intergenic 45.0%
AAGGTATGGTTAGGGCCATA+GGG - chr1.1:61557251-61557270 MS.gene056056:CDS 45.0%
ACCAGACTTGCAGAGATACT+TGG + chr1.1:61559227-61559246 None:intergenic 45.0%
ACCTACGTTTGGATGAGTGT+AGG - chr1.1:61558408-61558427 MS.gene056056:intron 45.0%
ACTAAGCTTCAAGACCCCTA+TGG + chr1.1:61557269-61557288 None:intergenic 45.0%
ATCAAATCCCATTCGCGGTA+AGG + chr1.1:61556395-61556414 None:intergenic 45.0%
ATGACAGCACCTCACACATT+TGG + chr1.1:61558510-61558529 None:intergenic 45.0%
ATTGTCGGTCCTTGTTCCAA+AGG + chr1.1:61559166-61559185 None:intergenic 45.0%
CAATTCACTGCGCTTCAAAC+AGG - chr1.1:61557972-61557991 MS.gene056056:intron 45.0%
CAGTCGGCTGAAACAAGAAA+AGG + chr1.1:61557700-61557719 None:intergenic 45.0%
CATCGCATCTGCATGAAAGT+AGG + chr1.1:61560889-61560908 None:intergenic 45.0%
CCAGAGACTATCCTAAGGTA+TGG - chr1.1:61557237-61557256 MS.gene056056:intron 45.0%
CCATACCTTAGGATAGTCTC+TGG + chr1.1:61557240-61557259 None:intergenic 45.0%
CCGACCTAATTTACGCTTCA+TGG - chr1.1:61557881-61557900 MS.gene056056:CDS 45.0%
CGAACAGTTGAAACACCTTG+TGG + chr1.1:61556753-61556772 None:intergenic 45.0%
CGCAACAATTGCGTTTGGAA+TGG - chr1.1:61559847-61559866 MS.gene056056:intron 45.0%
CGTTCTCCTCATTCTCAGAA+TGG - chr1.1:61562003-61562022 MS.gene056056:CDS 45.0%
CTCAGAATGGGGAAAAGGTT+GGG - chr1.1:61562016-61562035 MS.gene056056:CDS 45.0%
CTTTCAAAGTGCGGATGACT+TGG - chr1.1:61558275-61558294 MS.gene056056:intron 45.0%
GATAACTCACATTGCTTGGG+AGG + chr1.1:61559088-61559107 None:intergenic 45.0%
GCAGTACAGAATGCAATCTC+TGG + chr1.1:61561232-61561251 None:intergenic 45.0%
GCTAACACAGTTCACAAACG+TGG + chr1.1:61556883-61556902 None:intergenic 45.0%
GGAATCAGTGCTTGCTTTCT+TGG - chr1.1:61557144-61557163 MS.gene056056:intron 45.0%
GGTAATTTGATACGGCCTAC+TGG + chr1.1:61560706-61560725 None:intergenic 45.0%
GTAATGCACTCAGGAAACAC+CGG - chr1.1:61558195-61558214 MS.gene056056:intron 45.0%
GTAGCTGTCAATGCCATTAC+AGG + chr1.1:61557780-61557799 None:intergenic 45.0%
GTTGTCGCAACAATTGCGTT+TGG - chr1.1:61559842-61559861 MS.gene056056:intron 45.0%
GTTTCAGCAAGCTTCTGCAA+CGG + chr1.1:61557377-61557396 None:intergenic 45.0%
TAAGGTATGGTTAGGGCCAT+AGG - chr1.1:61557250-61557269 MS.gene056056:CDS 45.0%
TACCCGGAACTAACAGAACT+AGG - chr1.1:61561894-61561913 MS.gene056056:CDS 45.0%
TATCAGGGAAGGAGATGACA+AGG - chr1.1:61561601-61561620 MS.gene056056:intron 45.0%
TATGGCCCTAACCATACCTT+AGG + chr1.1:61557251-61557270 None:intergenic 45.0%
TCATACCCCTGCGTTATAAG+CGG + chr1.1:61559260-61559279 None:intergenic 45.0%
TCGATGTTGCATCTGATTGG+GGG - chr1.1:61556440-61556459 MS.gene056056:intron 45.0%
TCTCACTGTATCCTTTCTGG+TGG + chr1.1:61559200-61559219 None:intergenic 45.0%
TCTCAGAATGGGGAAAAGGT+TGG - chr1.1:61562015-61562034 MS.gene056056:CDS 45.0%
TCTCCACCACAGTATATCAG+TGG + chr1.1:61561549-61561568 None:intergenic 45.0%
TGACAGCACCTCACACATTT+GGG + chr1.1:61558509-61558528 None:intergenic 45.0%
TGGTTGATCGTTCTCGACTT+TGG + chr1.1:61556280-61556299 None:intergenic 45.0%
TTAGATGTAACTTGGGCAGC+TGG + chr1.1:61559555-61559574 None:intergenic 45.0%
TTTCCCTCAATGCAGACAGT+CGG + chr1.1:61557716-61557735 None:intergenic 45.0%
! ACCTGATTTGAGGACTTCTC+GGG - chr1.1:61562148-61562167 MS.gene056056:CDS 45.0%
! ACTGATATACTGTGGTGGAG+AGG - chr1.1:61561548-61561567 MS.gene056056:intron 45.0%
! AGTGTCACATGGGTAATGGT+TGG + chr1.1:61556202-61556221 None:intergenic 45.0%
! CCAAGATGACTGTGATGATG+GGG - chr1.1:61558164-61558183 MS.gene056056:intron 45.0%
! CTACGACTTGGCAAAAGTGA+TGG + chr1.1:61560346-61560365 None:intergenic 45.0%
! CTCACTGTATCCTTTCTGGT+GGG + chr1.1:61559199-61559218 None:intergenic 45.0%
! CTGTTTGAAGCGCAGTGAAT+TGG + chr1.1:61557974-61557993 None:intergenic 45.0%
! CTTGCACTGAGTTGTTGTTC+TGG - chr1.1:61561436-61561455 MS.gene056056:intron 45.0%
! GAGAGGCCTTACTCGAATTT+TGG - chr1.1:61561565-61561584 MS.gene056056:intron 45.0%
! TGATGATGTGGAAGAGCATG+AGG - chr1.1:61556360-61556379 MS.gene056056:intron 45.0%
! TTTTGGTCCCCAAATGTGTG+AGG - chr1.1:61558498-61558517 MS.gene056056:intron 45.0%
!! ATCAGAAGCACCAGAGCTAA+TGG + chr1.1:61558109-61558128 None:intergenic 45.0%
!! CTTAAGGAGCCTTTGGAACA+AGG - chr1.1:61559154-61559173 MS.gene056056:CDS 45.0%
!! TGGAAGTGTCACATGGGTAA+TGG + chr1.1:61556206-61556225 None:intergenic 45.0%
!!! CTCTTTGTTTTTTGGGGGTG+AGG - chr1.1:61559682-61559701 MS.gene056056:intron 45.0%
!!! TGGCTCGTTTTAGTTACCTG+TGG - chr1.1:61559043-61559062 MS.gene056056:CDS 45.0%
!!! CATTATTTATTTTATTTTTT+GGG - chr1.1:61558771-61558790 MS.gene056056:intron 5.0%
!!! TAAAAAAAATATTCTAAAAT+AGG - chr1.1:61560645-61560664 MS.gene056056:intron 5.0%
AACATTCGGTATCCAGCCCA+AGG - chr1.1:61558835-61558854 MS.gene056056:intron 50.0%
AACTCACATTGCTTGGGAGG+AGG + chr1.1:61559085-61559104 None:intergenic 50.0%
AAGGCCATCTGCATCATCTG+AGG + chr1.1:61558085-61558104 None:intergenic 50.0%
AGAAGGAAGCTCTCTCTGCT+TGG - chr1.1:61556521-61556540 MS.gene056056:intron 50.0%
AGGTATGGTTAGGGCCATAG+GGG - chr1.1:61557252-61557271 MS.gene056056:CDS 50.0%
AGTGCTTGCTTTCTTGGCTC+TGG - chr1.1:61557150-61557169 MS.gene056056:intron 50.0%
ATTTGCGCAGTGAGCCTACA+AGG - chr1.1:61561746-61561765 MS.gene056056:CDS 50.0%
CCCCATCATCACAGTCATCT+TGG + chr1.1:61558167-61558186 None:intergenic 50.0%
CCTACTACCAAGAAGCTGGA+CGG - chr1.1:61560089-61560108 MS.gene056056:CDS 50.0%
CTACTACCAAGAAGCTGGAC+GGG - chr1.1:61560090-61560109 MS.gene056056:CDS 50.0%
CTCACCTCAGATGATGCAGA+TGG - chr1.1:61558078-61558097 MS.gene056056:intron 50.0%
GAAAGAGTCCTTACCGCGAA+TGG - chr1.1:61556384-61556403 MS.gene056056:intron 50.0%
GAAGCCTACTACCAAGAAGC+TGG - chr1.1:61560085-61560104 MS.gene056056:CDS 50.0%
GACAGCACCTCACACATTTG+GGG + chr1.1:61558508-61558527 None:intergenic 50.0%
GATGGCCTTTCCATTAGCTC+TGG - chr1.1:61558096-61558115 MS.gene056056:CDS 50.0%
GCCAAGTATCTCTGCAAGTC+TGG - chr1.1:61559223-61559242 MS.gene056056:intron 50.0%
GCCCCAGAAAGCAAAGAAAG+AGG - chr1.1:61562108-61562127 MS.gene056056:CDS 50.0%
GCCTACACTCATCCAAACGT+AGG + chr1.1:61558412-61558431 None:intergenic 50.0%
GGGGTGAGGGAGTTTAAAGA+GGG - chr1.1:61559696-61559715 MS.gene056056:intron 50.0%
TAGTAACATCTAAGCCGGGG+CGG - chr1.1:61558385-61558404 MS.gene056056:intron 50.0%
TCCACAACGCTTGGAATCGA+AGG + chr1.1:61556136-61556155 None:intergenic 50.0%
TCTCTGCAAGTCTGGTGTGA+AGG - chr1.1:61559231-61559250 MS.gene056056:intron 50.0%
TTACCAATGCGCACGGAACA+AGG + chr1.1:61561812-61561831 None:intergenic 50.0%
! ACCTCAGGTTAGTCAGTCCT+TGG + chr1.1:61558855-61558874 None:intergenic 50.0%
! CAAAGTGCGGATGACTTGGA+TGG - chr1.1:61558279-61558298 MS.gene056056:intron 50.0%
! CCTCAGGTTAGTCAGTCCTT+GGG + chr1.1:61558854-61558873 None:intergenic 50.0%
! CCTGATTTGAGGACTTCTCG+GGG - chr1.1:61562149-61562168 MS.gene056056:CDS 50.0%
! GCACTGAGTTGTTGTTCTGG+TGG - chr1.1:61561439-61561458 MS.gene056056:intron 50.0%
! GGTGCTGTCATTATAGTCCC+TGG - chr1.1:61558519-61558538 MS.gene056056:intron 50.0%
! GTGCTTGCTTTCTTGGCTCT+GGG - chr1.1:61557151-61557170 MS.gene056056:intron 50.0%
! TCCTTCGATTCCAAGCGTTG+TGG - chr1.1:61556132-61556151 MS.gene056056:CDS 50.0%
!! AAAACCCATTTGGGTTGGCC+TGG + chr1.1:61558893-61558912 None:intergenic 50.0%
!! TTAGATGCAGTGACGGATCC+AGG + chr1.1:61559004-61559023 None:intergenic 50.0%
AACCAGATCCAGTTGCAGCC+AGG + chr1.1:61556570-61556589 None:intergenic 55.0%
ACCACCAGGCCAACCCAAAT+GGG - chr1.1:61558886-61558905 MS.gene056056:intron 55.0%
CAGCCGACTGTCTGCATTGA+GGG - chr1.1:61557710-61557729 MS.gene056056:CDS 55.0%
CCCAAGGACTGACTAACCTG+AGG - chr1.1:61558851-61558870 MS.gene056056:intron 55.0%
CCCCGAGAAGTCCTCAAATC+AGG + chr1.1:61562152-61562171 None:intergenic 55.0%
GGGGGTGAGGGAGTTTAAAG+AGG - chr1.1:61559695-61559714 MS.gene056056:intron 55.0%
TCAGCCGACTGTCTGCATTG+AGG - chr1.1:61557709-61557728 MS.gene056056:CDS 55.0%
TCAGGCACGTAGCTGTTCCA+TGG - chr1.1:61561292-61561311 MS.gene056056:intron 55.0%
TGTCTTGTCCTGGCTGCAAC+TGG - chr1.1:61556559-61556578 MS.gene056056:intron 55.0%
! AAGGCTGCCGCTTATAACGC+AGG - chr1.1:61559250-61559269 MS.gene056056:intron 55.0%
! AGGCTGCCGCTTATAACGCA+GGG - chr1.1:61559251-61559270 MS.gene056056:intron 55.0%
! AGGTTAGTCAGTCCTTGGGC+TGG + chr1.1:61558850-61558869 None:intergenic 55.0%
! CCGTCCAGCTTCTTGGTAGT+AGG + chr1.1:61560092-61560111 None:intergenic 55.0%
!! CAGAAGCTTGCTGAAACCCG+TGG - chr1.1:61557380-61557399 MS.gene056056:intron 55.0%
AGACGCTGACGACGGATCTC+AGG + chr1.1:61562047-61562066 None:intergenic 60.0%
ATCCAAACGTAGGTCCGCCC+CGG + chr1.1:61558402-61558421 None:intergenic 60.0%
CACCACCAGGCCAACCCAAA+TGG - chr1.1:61558885-61558904 MS.gene056056:intron 60.0%
GTCCTGGCTGCAACTGGATC+TGG - chr1.1:61556565-61556584 MS.gene056056:intron 60.0%
TACCAAGAAGCTGGACGGGC+TGG - chr1.1:61560094-61560113 MS.gene056056:CDS 60.0%
TGCGCAGTGAGCCTACAAGG+AGG - chr1.1:61561749-61561768 MS.gene056056:CDS 60.0%
! AATCCACTACGGTTGGCCGC+AGG - chr1.1:61559898-61559917 MS.gene056056:intron 60.0%
! GGCTGCCGCTTATAACGCAG+GGG - chr1.1:61559252-61559271 MS.gene056056:intron 60.0%
!! ACCCATTTGGGTTGGCCTGG+TGG + chr1.1:61558890-61558909 None:intergenic 60.0%
!! CAGCCTTGTTCCGTGCGCAT+TGG - chr1.1:61561806-61561825 MS.gene056056:CDS 60.0%
!! TGGCCTGGTGGTGTTGGCTT+GGG + chr1.1:61558878-61558897 None:intergenic 60.0%
!! TGGTGTTGGCTTGGGACCTC+AGG + chr1.1:61558870-61558889 None:intergenic 60.0%
!! TTGGCCTGGTGGTGTTGGCT+TGG + chr1.1:61558879-61558898 None:intergenic 60.0%
!! TTGGGTTGGCCTGGTGGTGT+TGG + chr1.1:61558884-61558903 None:intergenic 60.0%
AGACCTGCGGCCAACCGTAG+TGG + chr1.1:61559904-61559923 None:intergenic 65.0%
GACCAGCCCGTCCAGCTTCT+TGG + chr1.1:61560099-61560118 None:intergenic 65.0%
GGTCCCAAGCCAACACCACC+AGG - chr1.1:61558872-61558891 MS.gene056056:intron 65.0%
!! CTGGACGGGCTGGTCGAGAT+GGG - chr1.1:61560104-61560123 MS.gene056056:CDS 65.0%
!! CTGGGGCTCTGCCGCTTTGT+TGG + chr1.1:61562095-61562114 None:intergenic 65.0%
AGCCGGGGCGGACCTACGTT+TGG - chr1.1:61558397-61558416 MS.gene056056:intron 70.0%
!! GCTGGACGGGCTGGTCGAGA+TGG - chr1.1:61560103-61560122 MS.gene056056:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 61556034 61562202 61556034 ID=MS.gene056056
chr1.1 mRNA 61556034 61562202 61556034 ID=MS.gene056056.t1;Parent=MS.gene056056
chr1.1 exon 61561650 61562202 61561650 ID=MS.gene056056.t1.exon1;Parent=MS.gene056056.t1
chr1.1 CDS 61561650 61562202 61561650 ID=cds.MS.gene056056.t1;Parent=MS.gene056056.t1
chr1.1 exon 61560983 61561202 61560983 ID=MS.gene056056.t1.exon2;Parent=MS.gene056056.t1
chr1.1 CDS 61560983 61561202 61560983 ID=cds.MS.gene056056.t1;Parent=MS.gene056056.t1
chr1.1 exon 61560762 61560872 61560762 ID=MS.gene056056.t1.exon3;Parent=MS.gene056056.t1
chr1.1 CDS 61560762 61560872 61560762 ID=cds.MS.gene056056.t1;Parent=MS.gene056056.t1
chr1.1 exon 61560334 61560523 61560334 ID=MS.gene056056.t1.exon4;Parent=MS.gene056056.t1
chr1.1 CDS 61560334 61560523 61560334 ID=cds.MS.gene056056.t1;Parent=MS.gene056056.t1
chr1.1 exon 61559936 61560242 61559936 ID=MS.gene056056.t1.exon5;Parent=MS.gene056056.t1
chr1.1 CDS 61559936 61560242 61559936 ID=cds.MS.gene056056.t1;Parent=MS.gene056056.t1
chr1.1 exon 61558963 61559180 61558963 ID=MS.gene056056.t1.exon6;Parent=MS.gene056056.t1
chr1.1 CDS 61558963 61559180 61558963 ID=cds.MS.gene056056.t1;Parent=MS.gene056056.t1
chr1.1 exon 61558624 61558680 61558624 ID=MS.gene056056.t1.exon7;Parent=MS.gene056056.t1
chr1.1 CDS 61558624 61558680 61558624 ID=cds.MS.gene056056.t1;Parent=MS.gene056056.t1
chr1.1 exon 61558317 61558397 61558317 ID=MS.gene056056.t1.exon8;Parent=MS.gene056056.t1
chr1.1 CDS 61558317 61558397 61558317 ID=cds.MS.gene056056.t1;Parent=MS.gene056056.t1
chr1.1 exon 61558094 61558157 61558094 ID=MS.gene056056.t1.exon9;Parent=MS.gene056056.t1
chr1.1 CDS 61558094 61558157 61558094 ID=cds.MS.gene056056.t1;Parent=MS.gene056056.t1
chr1.1 exon 61557820 61557919 61557820 ID=MS.gene056056.t1.exon10;Parent=MS.gene056056.t1
chr1.1 CDS 61557820 61557919 61557820 ID=cds.MS.gene056056.t1;Parent=MS.gene056056.t1
chr1.1 exon 61557660 61557743 61557660 ID=MS.gene056056.t1.exon11;Parent=MS.gene056056.t1
chr1.1 CDS 61557660 61557743 61557660 ID=cds.MS.gene056056.t1;Parent=MS.gene056056.t1
chr1.1 exon 61557245 61557335 61557245 ID=MS.gene056056.t1.exon12;Parent=MS.gene056056.t1
chr1.1 CDS 61557245 61557335 61557245 ID=cds.MS.gene056056.t1;Parent=MS.gene056056.t1
chr1.1 exon 61556824 61556940 61556824 ID=MS.gene056056.t1.exon13;Parent=MS.gene056056.t1
chr1.1 CDS 61556824 61556940 61556824 ID=cds.MS.gene056056.t1;Parent=MS.gene056056.t1
chr1.1 exon 61556614 61556706 61556614 ID=MS.gene056056.t1.exon14;Parent=MS.gene056056.t1
chr1.1 CDS 61556614 61556706 61556614 ID=cds.MS.gene056056.t1;Parent=MS.gene056056.t1
chr1.1 exon 61556034 61556360 61556034 ID=MS.gene056056.t1.exon15;Parent=MS.gene056056.t1
chr1.1 CDS 61556034 61556360 61556034 ID=cds.MS.gene056056.t1;Parent=MS.gene056056.t1
Gene Sequence

>MS.gene056056

ATGGATTCCAACAACAAATCTTCGGAGCAAGTAATTTCAGAAATGGTTGAAATGGGTTTCGAGCATTCCCAAATTCTCGAAGCAATAAAAGTAGTGGGTCCTTCGATTCCAAGCGTTGTGGAGCATATCTTCAATACTAGTAATAGTAGTAGCAGTAATCGTGAACCAACCATTACCCATGTGACACTTCCAAGTAATGGGAAAGCTCTAAAAAAACGAGCTTTTTCATCTTCCATTCAAGTTCCAAAGTCGAGAACGATCAACCATTATTTTCAATCCAGTAGTAAAGTCAATGGGAAAAACAAAAATGTCGTTGTCCTTGATGATGATGATGTGGAAGAGCATGAGGAGAAAGAGTCCTTACCGCGAATGGGATTTGATCATGATTCCGGTGTAGCTAATGATTTCGATGTTGCATCTGATTGGGGGCAGAAAGCTAGCATTTTGTTGCAGAAGCATTTTGGTTTTTCATCATTGAAAAGTTTTCAGAAGGAAGCTCTCTCTGCTTGGATTGATCATAGAGATTGTCTTGTCCTGGCTGCAACTGGATCTGGTTTTGTTCTTTATCTTTACTAAAATGTTATTTGAACAATTTGAGACAACAAAATTCAACATCTTTTTAAATGGTTCGCACACGTGGTTAAAGAAGTTCAATGAGTGGCTAATGAGTATCTCAAGATTTGATAACTCATTAACCATTAACTTGACTTAATTAACCACAAGGTGTTTCAACTGTTCGTAAATTTGAACACTAGAAATCTAGGTTAATCGCATTTAAATCTATGGTTAATAAATAATAAGTTGGGATGCCAAATATATCTATTACTCACCTTTTGATTTTGTTAACCACGTTTGTGAACTGTGTTAGCTATTTAAAAAGTTGTCGAATTTGGTTGTTCTGGATAAAGTATAAGTATCATTTCTGCTATATATATTTCTTCATACTTGCTGTGTTCTGTGCAGCTGTTGTGCATCTATTCATAGTGTTACTTTTTGGCAGGGAAATCTCTGTGCTTTCAGATTCCTGCATTGTTAACTGGGAAAGTGGTGGTTGTGATTTCGCCTTTAATAAGCCTAATGCACGATCAATGCTTAAAGCTAACAAAATATGGAATCAGTGCTTGCTTTCTTGGCTCTGGGCAGCCTGATAATACTGTTGAAAAGAAAGCAATGAGAGGCATGTATAGTATAGTGTATGTTTGTCCAGAGACTATCCTAAGGTATGGTTAGGGCCATAGGGGTCTTGAAGCTTAGTCTGTGTTTCAGAAGTCTACATTTGCTGTCTTTTTGTTCTTCTCATGTTTGGTATTTATAATACAATTCAATGTAGATTGATTCAACCGTTGCAGAAGCTTGCTGAAACCCGTGGTATTGCTTTGTTTGCAATTGATGAGGTACATTGTGTTTCTAAATGGGGTCATGATTTTCGTCCAGCTTACAGGTTTGTTATTTTTATCCCTTCTATTTATTCATTGTTTATGCACCAATTAGTGTGCATACATCTTAAATTATCATAGCTTGTGATTTGTGTGTACATCAAAGAACCTAAGATTAATTGATTTGTTGGTTGACTTTTTCAACTATCAAACATATCAAGTTTATCCTTTGTTTGTGTATTTATTCTAATCTTGCCATTTGTAAGTATGATATGTTTTTTTAAATGCCTTTTCTTGTTTCAGCCGACTGTCTGCATTGAGGGAAAATTTCACTACTGGCAAGCTAAAATCCTTGAAATTCGATATACCTGTAATGGCATTGACAGCTACAGCTACAGAGAGAGTTCGAGAAGACATTTTAAAATCACTGCGTTTGTCAAAAGATACAAGTCTTGTTCTCACATCATTTTTCCGACCTAATTTACGCTTCATGGTGAGTTTGTTGATGACAATTCATATAATTATTATATTTTTTGTTACTCCATAACCTCCATTACACTTCCAATTCACTGCGCTTCAAACAGGTAAAGCATAGTAGAACATCATGGGCTTCTTATGAGAAAGATTTTCATGAATTGATTAAAGTATATGGTGGGAATAAAAAAGCTCTCACCTCAGATGATGCAGATGGCCTTTCCATTAGCTCTGGTGCTTCTGATACAGACAGTGTTTCTTCTTATGATGTGGACGGCAACCAAGATGACTGTGATGATGGGGATATAAATGTAATGCACTCAGGAAACACCGGCAATCATAAAAAAAGAAGAAAATTGACAATTGAGTTCCTGGAAAATGATGTTGATGTCTTTCAAAGTGCGGATGACTTGGATGGTACTGATCTTTCTGCTATCTCTCAGTTCAGTACAAATAATTGGTCATGTTTAGTTTAGAAACTGAAAGCATTTTCAGTGCTAGTAGTAACATCTAAGCCGGGGCGGACCTACGTTTGGATGAGTGTAGGCTTGTGCCCCCCACTGTGTTTCTTACAATTTGTTGAGTACATATATTAATATTAGGGTAAACAATTATTTTGGTCCCCAAATGTGTGAGGTGCTGTCATTATAGTCCCTGGATGTATCAAAACTGCAAATGCATTCCAAGTGTCTCTTTTGTTTGTAATTTTAGAGACTAAATTGAATAACGAAAAACGCATTTGAGGACCAAAAGATTATCAAAAAACACATTTGAGGACCAAAATGACTAATTAAAGAGACACTTGAGGATATGTTTGCTATTTGGATACATTCAGGAACTATAATGACAGCACCTCACATATTCAAAGGCCAAAATGGTTGTTTGTCCATTATTTATTTTATTTTTTGGGTCTGAAAATGAATAAATGTTGTTTGTTTGTCATTTTTTTTTAACATTCGGTATCCAGCCCAAGGACTGACTAACCTGAGGTCCCAAGCCAACACCACCAGGCCAACCCAAATGGGTTTTGTTCTATTATTATAGAAAATGATAAATCAGTCGATGTTTTATTTAATGTTATAGTTGTCTATGCATGTTGGCCTCACTACATAAAATTCCTGGATCCGTCACTGCATCTAAGATTCCTAATTGTATGTGTTGGCTCGTTTTAGTTACCTGTGGTGAATTTTGTGTACAACCTCCTCCCAAGCAATGTGAGTTATCTGAGACAATTGATACACCTACAAAACCAGAAAAAAGACTCAAAATGCTTAAGGAGCCTTTGGAACAAGGACCGACAATTATATATGTACCCACCAGAAAGGATACAGTGAGAATTGCCAAGTATCTCTGCAAGTCTGGTGTGAAGGCTGCCGCTTATAACGCAGGGGTATGAAGTATAATTATATTCAAGCTTGTTTAATTAGATGGCTGTTTATATTTTGAATGAATCAGGGTGATCATGTCTTGACAAGAGAATTTCAATTCTATGCACCATCTTTATTTTCAATTATTTTGGCATGCTCCATTGCAGATTTCGTTGAACCAAGCTCAATAGTTAATTTTGCATTATGATATATAAGAAATGTTTGCTGCACATTCTCCTAACACCGTTTGATTTATTGCATTGTGAAGTTTGAAACCAATTTATGAGTTCAATTTCTTTCTCCAGCTGCCCAAGTTACATCTAAGAAGGACTCATAAAGAGTTTCATGAAAATACTTTAGAGGTATGGATCTGGTGCCTGAACAGAATATTTTAGACGTGTCAGTTCAATATTTTTCAACTCAACTACTCGCTCTTTGTTTTTTGGGGGTGAGGGAGTTTAAAGAGGGACTTCTAATTTTATTATTTGAATTAACGTGGTCGTATGTCATCTTTTAATACTTCAATTTTATATGCTGGATTCAGAAATTTAGGTTTCACATGTTGTGCTTGTGTTTTATCATCTTCAGGTTGTTGTCGCAACAATTGCGTTTGGAATGGGAATTGATAAATCAAATGTTAGAAGAATAATCCACTACGGTTGGCCGCAGGTCTTTTTTTTCAAATACATTTTTCCTGACATAATCAATTATAATTGAAGTTTTTATCTGTATTTTCTTGTGCATTCCATGTTTTATACTCTCACTTCCCAAGTTTTAAAAAAATTCTTTTGTAGATACCTAAAATATTTTTACATGTAATTTTATTAGAGTTTGGAAGCCTACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCAGATTGCAGTAAGTTTAATTATACTGTAGTATAATTTTTATCTTGGGATGCAGTTTTCCTTTCTTGCTCTCTTCATTCTCTTTTGAATTTTAAATTTATGTTTCACCTTTGATTCACATAATAAGTAGGTTGCTTATTGCTCTATTCTTTTGCTCTTGTATTTGGCCCCCATTTTCAACCAGTTCTATATGCAAACCTAGCAAGGAAGCCATCACTTTTGCCAAGTCGTAGAAGTGAAGATATGACAAAACAAGCATATATCATGTTGTCTGATTGTTTCAGGTTTGCCATGATGAATGTATCTTCGTCTTCTTTTCCGATATTATGTTAGTGTTAAATCTTATTTGTATATGTGCAGATATGGAATGAATACTTCATGTTGTCGAGCAAAGATACTTGTAGAATACTTCGGAGAGGATTTCAGCAATCAGAAATGTCTCTTGTATGTCAAGTTTGGTCTCAATGGCTAGCTGTTTTATTATCTTTAACAGTTTAAGCATTAGTTGAACTTAAAAAAAATATTCTAAAATAGGAGAAACTTGAAATCCTTTTTGTATTTTAAATTCAACCAGTAGGCCGTATCAAATTACCTTGTTTATTGTACCAAAAATTACCTTGTTTATTGCATTAGCTTATCGGCTTTCTTTTGTAATCAAAGGATTATCTTGTGGTTGTATTTATTGGTAGTGTGTTGAATTTGGAGTCATTTATTAATTCATGTTGGCCTTTACACCGTCATTTTCATGATGAACCTACTTTCATGCAGATGCGATGTGTGCAATAATGGACCACCTCAAAGACTGAATCTAAAAGAGGAGGCTTGTATTTTACTGCAAACTATAATGCGGGCCCGAAATGTATGTCTAATATTTTCAGTTTGATATTTGTATTAGACCAACTACACTTGCATTTGTGTCTTATATGTGACTTTTATACCTAAATACTGACCCTTGGACTTTTACAGCATAGTTTTCAAACATACTGTACCTCATCCTACTCCATGTGTGTTTGTGTTTCTATTTTTCTGGATAAAGTTTCAAAATGATAAATTGGTTAAACAAATGCTTTGTTTTGTGGAATGAAACTGTCATGGACCAGAGATTGCATTCTGTACTGCATAAGTGGAAAGAAACTGATATGTCATGAATGCTATTTTTTCAGGCACGTAGCTGTTCCATGGATTCCTCATATAATGATGATATCCATTTCAATTCCAAGGATAGAAAACTAGGAGAGAGGCCAAGTCTTACGACGTTAGTTAGAAGTATAAGGGAGCAGGTAAACCTGTGTATAATTATCAGCTTGCACTGAGTTGTTGTTCTGGTGGATGCTTTATGTTGTTACGAATTCAAGTAACAAATTTTAATTGCTTCCATATATGATGATCATACACAGTTTCAAAAATTCTTAACCACTGATATACTGTGGTGGAGAGGCCTTACTCGAATTTTGGAAGCTAAAGGATATATCAGGGAAGGAGATGACAAGGTATACTTGCTTCAACTAGAAACAACCTATCCTTGTATATTGATATTAAAATTGCATGTTCATTGAATTATTTGTTGAAAGTGTTGAATTTGTTGTCACTGAAACTTAAGAAATTATATAAACATTTGCGCAGTGAGCCTACAAGGAGGTAGTGTAACATAATGATCTTTATCTGCACATATGCAGCCTTGTTCCGTGCGCATTGGTAATTCAACTGCAATTTGACCTCAAGTTTTCCACTGTACAATTGCAGACAAATGTTCAGATAAAATACCCGGAACTAACAGAACTAGGTTTGGACTTTGTCAAGTCCATGACTGAAGAAACTTTCTATGTTTACCCTGAAGCAGATATGTTACTTGAAACAAAAACTGACAAACCGTTCTCCTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGTCGTCAGCGTCTAGAAAAAATGCAACTCGATAGAAATCCAACAAAGCGGCAGAGCCCCAGAAAGCAAAGAAAGAGGAGAGCTAGAAAAATGAAACCTGATTTGAGGACTTCTCGGGGTAGACTATCAGCAAAACTCTCAAAAAAGTAA
Protein sequence

>MS.gene056056.t1

MDSNNKSSEQVISEMVEMGFEHSQILEAIKVVGPSIPSVVEHIFNTSNSSSSNREPTITHVTLPSNGKALKKRAFSSSIQVPKSRTINHYFQSSSKVNGKNKNVVVLDDDDVEEHEEKESLPRMGFDHDSGVANDFDVASDWGQKASILLQKHFGFSSLKSFQKEALSAWIDHRDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLTKYGISACFLGSGQPDNTVEKKAMRGMYSIVYVCPETILRLIQPLQKLAETRGIALFAIDEVHCVSKWGHDFRPAYSRLSALRENFTTGKLKSLKFDIPVMALTATATERVREDILKSLRLSKDTSLVLTSFFRPNLRFMVKHSRTSWASYEKDFHELIKVYGGNKKALTSDDADGLSISSGASDTDSVSSYDVDGNQDDCDDGDINVMHSGNTGNHKKRRKLTIEFLENDVDVFQSADDLDVTCGEFCVQPPPKQCELSETIDTPTKPEKRLKMLKEPLEQGPTIIYVPTRKDTVRIAKYLCKSGVKAAAYNAGLPKLHLRRTHKEFHENTLEVVVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLARKPSLLPSRRSEDMTKQAYIMLSDCFRYGMNTSCCRAKILVEYFGEDFSNQKCLLCDVCNNGPPQRLNLKEEACILLQTIMRARNARSCSMDSSYNDDIHFNSKDRKLGERPSLTTLVRSIREQFQKFLTTDILWWRGLTRILEAKGYIREGDDKTNVQIKYPELTELGLDFVKSMTEETFYVYPEADMLLETKTDKPFSSFSEWGKGWADPEIRRQRLEKMQLDRNPTKRQSPRKQRKRRARKMKPDLRTSRGRLSAKLSKK