Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056234.t1 | XP_003627843.1 | 93.2 | 192 | 13 | 0 | 1 | 192 | 1 | 192 | 5.60E-97 | 363.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056234.t1 | Q9LK88 | 75.9 | 187 | 45 | 0 | 5 | 191 | 10 | 196 | 2.4e-80 | 299.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056234.t1 | B7FMX0 | 93.2 | 192 | 13 | 0 | 1 | 192 | 1 | 192 | 4.0e-97 | 363.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056234 | MS.gene91795 | 0.802682 | 5.00E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056234.t1 | MTR_8g039090 | 93.229 | 192 | 13 | 0 | 1 | 192 | 1 | 192 | 1.13e-134 | 375 |
MS.gene056234.t1 | MTR_3g019160 | 76.562 | 192 | 44 | 1 | 1 | 192 | 1 | 191 | 6.73e-108 | 307 |
MS.gene056234.t1 | MTR_3g019090 | 72.872 | 188 | 51 | 0 | 5 | 192 | 4 | 191 | 7.75e-106 | 301 |
MS.gene056234.t1 | MTR_3g019150 | 73.545 | 189 | 49 | 1 | 4 | 192 | 3 | 190 | 1.56e-102 | 293 |
MS.gene056234.t1 | MTR_3g019120 | 64.398 | 191 | 65 | 1 | 3 | 190 | 2 | 192 | 2.07e-88 | 265 |
MS.gene056234.t1 | MTR_3g019120 | 64.398 | 191 | 65 | 1 | 3 | 190 | 2 | 192 | 4.52e-87 | 265 |
MS.gene056234.t1 | MTR_3g019090 | 72.535 | 142 | 39 | 0 | 51 | 192 | 1 | 142 | 4.22e-79 | 232 |
MS.gene056234.t1 | MTR_3g019120 | 67.105 | 152 | 50 | 0 | 39 | 190 | 1 | 152 | 2.77e-73 | 228 |
MS.gene056234.t1 | MTR_3g019150 | 77.000 | 100 | 23 | 0 | 93 | 192 | 35 | 134 | 4.18e-55 | 171 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056234.t1 | AT3G27890 | 75.936 | 187 | 45 | 0 | 5 | 191 | 10 | 196 | 2.36e-102 | 293 |
Find 37 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAAAGTGGCAGCACTTTC+TGG | 0.206807 | 8.1:+65027407 | MS.gene056234:CDS |
CATCTAGACCACCAAATGTT+TGG | 0.329711 | 8.1:+65028680 | MS.gene056234:CDS |
CTTTGAAGAATGCAATTGAT+TGG | 0.350901 | 8.1:+65028656 | MS.gene056234:CDS |
ATCTAGACCACCAAATGTTT+GGG | 0.385196 | 8.1:+65028681 | MS.gene056234:CDS |
TTTGAAGAATGCAATTGATT+GGG | 0.425883 | 8.1:+65028657 | MS.gene056234:CDS |
GCATTTACTCTGAGACTTCA+AGG | 0.432779 | 8.1:+65028925 | MS.gene056234:CDS |
AGAGAGAACCAGCACGGATA+AGG | 0.440891 | 8.1:-65027460 | None:intergenic |
TGGCGAAAAGCTTCAACAAC+AGG | 0.452851 | 8.1:-65027667 | None:intergenic |
TTTCCAGCCCAAACATTTGG+TGG | 0.464756 | 8.1:-65028688 | None:intergenic |
ATAAGCACTGGAGGAGACTT+TGG | 0.465806 | 8.1:+65028724 | MS.gene056234:CDS |
CGGCGATTTGATTGATGAAG+AGG | 0.499893 | 8.1:+65028864 | MS.gene056234:CDS |
CACTCAGGCCTTATCCGTGC+TGG | 0.501119 | 8.1:+65027452 | MS.gene056234:CDS |
GGCTAAGGATAAGCTTAAGC+AGG | 0.509373 | 8.1:+65028885 | MS.gene056234:CDS |
GCAGCAATTGAATTGAGTAA+AGG | 0.518179 | 8.1:+65027556 | MS.gene056234:intron |
TTGAGTAAAGGAGCAATTGA+AGG | 0.521083 | 8.1:+65027568 | MS.gene056234:CDS |
TTTGATTGATGAAGAGGCTA+AGG | 0.522697 | 8.1:+65028870 | MS.gene056234:CDS |
AGACCACCAAATGTTTGGGC+TGG | 0.522737 | 8.1:+65028685 | MS.gene056234:CDS |
GCAGCTGCAATCATAAGCAC+TGG | 0.535634 | 8.1:+65028712 | MS.gene056234:CDS |
CAATCAATTGCATTCTTCAA+AGG | 0.536460 | 8.1:-65028655 | None:intergenic |
CAATATCATCTACGCCAAGT+TGG | 0.566210 | 8.1:+65028760 | MS.gene056234:CDS |
TCAAGATCAGTGTTATACAT+TGG | 0.571274 | 8.1:-65027625 | None:intergenic |
TAACACTGATCTTGAAAACA+AGG | 0.588794 | 8.1:+65027633 | MS.gene056234:CDS |
GAGTATAATTACTCTCTCAC+AGG | 0.592007 | 8.1:+65027730 | MS.gene056234:CDS |
CCTGCAAAATTCAATGATGA+CGG | 0.593971 | 8.1:+65028844 | MS.gene056234:CDS |
CGAAAAGCTTCAACAACAGG+TGG | 0.602230 | 8.1:-65027664 | None:intergenic |
GTGAGAGAGTAATTATACTC+AGG | 0.609716 | 8.1:-65027727 | None:intergenic |
ACTGGAGGAGACTTTGGCGG+TGG | 0.610622 | 8.1:+65028730 | MS.gene056234:CDS |
AGCACTGGAGGAGACTTTGG+CGG | 0.611760 | 8.1:+65028727 | MS.gene056234:CDS |
AGAAAAGCTTCATACCACTC+AGG | 0.621659 | 8.1:+65027437 | MS.gene056234:CDS |
GATCGATATAGACTCCAACT+TGG | 0.643158 | 8.1:-65028774 | None:intergenic |
AATGCTCTTAGAAAGAACTC+AGG | 0.646361 | 8.1:-65028814 | None:intergenic |
GCTGCAATCATAAGCACTGG+AGG | 0.650272 | 8.1:+65028715 | MS.gene056234:CDS |
TATCAGCTTGAAGAATCTTG+TGG | 0.652286 | 8.1:-65027687 | None:intergenic |
AGAGAAAGAGAGAACCAGCA+CGG | 0.654309 | 8.1:-65027466 | None:intergenic |
AACACTGATCTTGAAAACAA+GGG | 0.673165 | 8.1:+65027634 | MS.gene056234:CDS |
CAGCACGGATAAGGCCTGAG+TGG | 0.690555 | 8.1:-65027451 | None:intergenic |
GGCAACAGCAGTGATCAAAG+TGG | 0.716829 | 8.1:+65027394 | MS.gene056234:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAATTCATCAAAAAATATA+CGG | - | chr8.1:65027935-65027954 | None:intergenic | 10.0% |
!!! | ATACTTAACAATTTTTATAA+TGG | + | chr8.1:65028113-65028132 | MS.gene056234:intron | 10.0% |
!!! | TAATTCTTTTTATTACAAAT+TGG | - | chr8.1:65028569-65028588 | None:intergenic | 10.0% |
!! | TAATTCATCAAAAAATATAC+GGG | - | chr8.1:65027934-65027953 | None:intergenic | 15.0% |
!! | TTTATACCATTTAAATACTA+CGG | - | chr8.1:65028402-65028421 | None:intergenic | 15.0% |
!!! | GTATATTTTTTGATGAATTA+AGG | + | chr8.1:65027934-65027953 | MS.gene056234:intron | 15.0% |
!!! | TTCTTTTATTCTTCTATTAT+TGG | - | chr8.1:65027818-65027837 | None:intergenic | 15.0% |
!!! | CTTTGAAATTGTAATAGTTT+GGG | + | chr8.1:65028156-65028175 | MS.gene056234:intron | 20.0% |
!!! | TCTTTTTATTACAAATTGGT+CGG | - | chr8.1:65028565-65028584 | None:intergenic | 20.0% |
! | CCAAACTATTACAATTTCAA+AGG | - | chr8.1:65028158-65028177 | None:intergenic | 25.0% |
! | TAAATGGTATAAAGAAACTG+CGG | + | chr8.1:65028409-65028428 | MS.gene056234:intron | 25.0% |
! | TTTGAAGAATGCAATTGATT+GGG | + | chr8.1:65028657-65028676 | MS.gene056234:CDS | 25.0% |
!!! | CCTTTGAAATTGTAATAGTT+TGG | + | chr8.1:65028155-65028174 | MS.gene056234:intron | 25.0% |
AACACTGATCTTGAAAACAA+GGG | + | chr8.1:65027634-65027653 | MS.gene056234:CDS | 30.0% | |
ACAACCAATGTATAGTACTT+AGG | + | chr8.1:65027968-65027987 | MS.gene056234:intron | 30.0% | |
ACACAAAATAAAGGTGAAGA+TGG | - | chr8.1:65028629-65028648 | None:intergenic | 30.0% | |
AGGAGCTAAACACAAAATAA+AGG | - | chr8.1:65028638-65028657 | None:intergenic | 30.0% | |
CAATCAATTGCATTCTTCAA+AGG | - | chr8.1:65028658-65028677 | None:intergenic | 30.0% | |
GAATGTTTGAATGTTTGATG+AGG | - | chr8.1:65028476-65028495 | None:intergenic | 30.0% | |
TAACACTGATCTTGAAAACA+AGG | + | chr8.1:65027633-65027652 | MS.gene056234:CDS | 30.0% | |
TCAAGATCAGTGTTATACAT+TGG | - | chr8.1:65027628-65027647 | None:intergenic | 30.0% | |
TCTGAACCGTAGTATTTAAA+TGG | + | chr8.1:65028393-65028412 | MS.gene056234:intron | 30.0% | |
TGATAGTCTCAACATTTCAA+TGG | + | chr8.1:65028191-65028210 | MS.gene056234:intron | 30.0% | |
! | CTTTGAAGAATGCAATTGAT+TGG | + | chr8.1:65028656-65028675 | MS.gene056234:CDS | 30.0% |
!! | TTGTAGCTTTGAAATGATCA+TGG | - | chr8.1:65028291-65028310 | None:intergenic | 30.0% |
!!! | GTTGTAGTTTTGAATTTGCA+TGG | + | chr8.1:65027521-65027540 | MS.gene056234:intron | 30.0% |
AAAGTGAAAGAACCCACAAA+CGG | + | chr8.1:65028317-65028336 | MS.gene056234:intron | 35.0% | |
AATGCTCTTAGAAAGAACTC+AGG | - | chr8.1:65028817-65028836 | None:intergenic | 35.0% | |
ATCTAGACCACCAAATGTTT+GGG | + | chr8.1:65028681-65028700 | MS.gene056234:CDS | 35.0% | |
CCTGCAAAATTCAATGATGA+CGG | + | chr8.1:65028844-65028863 | MS.gene056234:CDS | 35.0% | |
CTATATCTCCGAATGTAGAA+TGG | - | chr8.1:65028435-65028454 | None:intergenic | 35.0% | |
GAATGTTTGATGAGGAAGTT+CGG | - | chr8.1:65028468-65028487 | None:intergenic | 35.0% | |
GAGTATAATTACTCTCTCAC+AGG | + | chr8.1:65027730-65027749 | MS.gene056234:CDS | 35.0% | |
GCAAATGTAGTACGTATCAT+TGG | - | chr8.1:65027891-65027910 | None:intergenic | 35.0% | |
GCAGCAATTGAATTGAGTAA+AGG | + | chr8.1:65027556-65027575 | MS.gene056234:intron | 35.0% | |
GTGAGAGAGTAATTATACTC+AGG | - | chr8.1:65027730-65027749 | None:intergenic | 35.0% | |
TATCAGCTTGAAGAATCTTG+TGG | - | chr8.1:65027690-65027709 | None:intergenic | 35.0% | |
TGGACCTAAGTACTATACAT+TGG | - | chr8.1:65027975-65027994 | None:intergenic | 35.0% | |
TTCGGAGATATAGACACAAA+AGG | + | chr8.1:65028442-65028461 | MS.gene056234:intron | 35.0% | |
TTGAGTAAAGGAGCAATTGA+AGG | + | chr8.1:65027568-65027587 | MS.gene056234:CDS | 35.0% | |
TTTGATTGATGAAGAGGCTA+AGG | + | chr8.1:65028870-65028889 | MS.gene056234:CDS | 35.0% | |
! | TCATCATTGAATTTTGCAGG+TGG | - | chr8.1:65028844-65028863 | None:intergenic | 35.0% |
!! | TAGCTTTGAAATGATCATGG+TGG | - | chr8.1:65028288-65028307 | None:intergenic | 35.0% |
!!! | ATATCCAACCGCTTTTTCAT+CGG | - | chr8.1:65028352-65028371 | None:intergenic | 35.0% |
AAGCGCTAAAGCTATCATGT+AGG | - | chr8.1:65028220-65028239 | None:intergenic | 40.0% | |
AATTCCGATGAAAAAGCGGT+TGG | + | chr8.1:65028345-65028364 | MS.gene056234:intron | 40.0% | |
AGAAAAGCTTCATACCACTC+AGG | + | chr8.1:65027437-65027456 | MS.gene056234:CDS | 40.0% | |
AGCGCTAAAGCTATCATGTA+GGG | - | chr8.1:65028219-65028238 | None:intergenic | 40.0% | |
CAATATCATCTACGCCAAGT+TGG | + | chr8.1:65028760-65028779 | MS.gene056234:CDS | 40.0% | |
CATATATAGACACCGAAGAG+TGG | - | chr8.1:65028089-65028108 | None:intergenic | 40.0% | |
CATCTAGACCACCAAATGTT+TGG | + | chr8.1:65028680-65028699 | MS.gene056234:CDS | 40.0% | |
GATCGATATAGACTCCAACT+TGG | - | chr8.1:65028777-65028796 | None:intergenic | 40.0% | |
GATGAAAAAGCGGTTGGATA+TGG | + | chr8.1:65028351-65028370 | MS.gene056234:intron | 40.0% | |
GCAGGTGTATTGTTGTAATC+TGG | - | chr8.1:65027995-65028014 | None:intergenic | 40.0% | |
GGACAATTCCGATGAAAAAG+CGG | + | chr8.1:65028341-65028360 | MS.gene056234:intron | 40.0% | |
! | AGTGGTATGAAGCTTTTCTG+AGG | - | chr8.1:65027436-65027455 | None:intergenic | 40.0% |
! | CCGTCATCATTGAATTTTGC+AGG | - | chr8.1:65028847-65028866 | None:intergenic | 40.0% |
! | GATCATGGTGGAAAGTCATT+GGG | - | chr8.1:65028276-65028295 | None:intergenic | 40.0% |
! | GCAGGTTCTTTTATCTTTGC+AGG | + | chr8.1:65028903-65028922 | MS.gene056234:CDS | 40.0% |
! | GTGGTATGAAGCTTTTCTGA+GGG | - | chr8.1:65027435-65027454 | None:intergenic | 40.0% |
! | TGATCATGGTGGAAAGTCAT+TGG | - | chr8.1:65028277-65028296 | None:intergenic | 40.0% |
!! | GCATTTACTCTGAGACTTCA+AGG | + | chr8.1:65028925-65028944 | MS.gene056234:CDS | 40.0% |
!! | TGATAGCTTTAGCGCTTGAT+TGG | + | chr8.1:65028223-65028242 | MS.gene056234:intron | 40.0% |
AACTGCGGCCATTCTACATT+CGG | + | chr8.1:65028424-65028443 | MS.gene056234:intron | 45.0% | |
AAGGAGCTTTGCTAGCAAAG+GGG | - | chr8.1:65028048-65028067 | None:intergenic | 45.0% | |
AGAGAAAGAGAGAACCAGCA+CGG | - | chr8.1:65027469-65027488 | None:intergenic | 45.0% | |
ATCAAAGTGGCAGCACTTTC+TGG | + | chr8.1:65027407-65027426 | MS.gene056234:CDS | 45.0% | |
CGAAAAGCTTCAACAACAGG+TGG | - | chr8.1:65027667-65027686 | None:intergenic | 45.0% | |
CGGCGATTTGATTGATGAAG+AGG | + | chr8.1:65028864-65028883 | MS.gene056234:CDS | 45.0% | |
GAAGGAGCTTTGCTAGCAAA+GGG | - | chr8.1:65028049-65028068 | None:intergenic | 45.0% | |
GGCTAAGGATAAGCTTAAGC+AGG | + | chr8.1:65028885-65028904 | MS.gene056234:CDS | 45.0% | |
TGAAGGAGCTTTGCTAGCAA+AGG | - | chr8.1:65028050-65028069 | None:intergenic | 45.0% | |
TGGCGAAAAGCTTCAACAAC+AGG | - | chr8.1:65027670-65027689 | None:intergenic | 45.0% | |
TTTCCAGCCCAAACATTTGG+TGG | - | chr8.1:65028691-65028710 | None:intergenic | 45.0% | |
! | GCTTTTCCAGCCCAAACATT+TGG | - | chr8.1:65028694-65028713 | None:intergenic | 45.0% |
!! | ATAAGCACTGGAGGAGACTT+TGG | + | chr8.1:65028724-65028743 | MS.gene056234:CDS | 45.0% |
!!! | TTTAGATTTTTATTTTTTTT+TGG | + | chr8.1:65027780-65027799 | MS.gene056234:intron | 5.0% |
AAAGCGGTTGGATATGGCTC+AGG | + | chr8.1:65028357-65028376 | MS.gene056234:intron | 50.0% | |
AGACCACCAAATGTTTGGGC+TGG | + | chr8.1:65028685-65028704 | MS.gene056234:CDS | 50.0% | |
AGAGAGAACCAGCACGGATA+AGG | - | chr8.1:65027463-65027482 | None:intergenic | 50.0% | |
CGGAATTGTCCACCGTTTGT+GGG | - | chr8.1:65028332-65028351 | None:intergenic | 50.0% | |
GCAGCTGCAATCATAAGCAC+TGG | + | chr8.1:65028712-65028731 | MS.gene056234:CDS | 50.0% | |
GGCAACAGCAGTGATCAAAG+TGG | + | chr8.1:65027394-65027413 | MS.gene056234:CDS | 50.0% | |
GTGAAAGAACCCACAAACGG+TGG | + | chr8.1:65028320-65028339 | MS.gene056234:intron | 50.0% | |
TAGACACCGAAGAGTGGCAA+TGG | - | chr8.1:65028083-65028102 | None:intergenic | 50.0% | |
TCGGAATTGTCCACCGTTTG+TGG | - | chr8.1:65028333-65028352 | None:intergenic | 50.0% | |
! | CATGGTGGAAAGTCATTGGG+AGG | - | chr8.1:65028273-65028292 | None:intergenic | 50.0% |
!! | GCGCTTGATTGGTAATGCGT+AGG | + | chr8.1:65028234-65028253 | MS.gene056234:intron | 50.0% |
!! | GCTGCAATCATAAGCACTGG+AGG | + | chr8.1:65028715-65028734 | MS.gene056234:CDS | 50.0% |
ACCGAAGAGTGGCAATGGCA+AGG | - | chr8.1:65028078-65028097 | None:intergenic | 55.0% | |
CCCTTGCCATTGCCACTCTT+CGG | + | chr8.1:65028074-65028093 | MS.gene056234:intron | 55.0% | |
CCGAAGAGTGGCAATGGCAA+GGG | - | chr8.1:65028077-65028096 | None:intergenic | 55.0% | |
CGAAGAGTGGCAATGGCAAG+GGG | - | chr8.1:65028076-65028095 | None:intergenic | 55.0% | |
CTTTGCTAGCAAAGGGGCGA+CGG | - | chr8.1:65028042-65028061 | None:intergenic | 55.0% | |
GACGGGGTTATATTCCCTCG+AGG | - | chr8.1:65028024-65028043 | None:intergenic | 55.0% | |
TTTGCTAGCAAAGGGGCGAC+GGG | - | chr8.1:65028041-65028060 | None:intergenic | 55.0% | |
! | AGCACTGGAGGAGACTTTGG+CGG | + | chr8.1:65028727-65028746 | MS.gene056234:CDS | 55.0% |
ACACCTGCATCGTGCCTCGA+GGG | + | chr8.1:65028007-65028026 | MS.gene056234:intron | 60.0% | |
ACTGGAGGAGACTTTGGCGG+TGG | + | chr8.1:65028730-65028749 | MS.gene056234:CDS | 60.0% | |
ATTCCCTCGAGGCACGATGC+AGG | - | chr8.1:65028013-65028032 | None:intergenic | 60.0% | |
CAGCACGGATAAGGCCTGAG+TGG | - | chr8.1:65027454-65027473 | None:intergenic | 60.0% | |
GCAATGGCAAGGGGCAGTGA+AGG | - | chr8.1:65028067-65028086 | None:intergenic | 60.0% | |
TACACCTGCATCGTGCCTCG+AGG | + | chr8.1:65028006-65028025 | MS.gene056234:intron | 60.0% | |
TTGCTAGCAAAGGGGCGACG+GGG | - | chr8.1:65028040-65028059 | None:intergenic | 60.0% | |
! | CACTCAGGCCTTATCCGTGC+TGG | + | chr8.1:65027452-65027471 | MS.gene056234:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 65027392 | 65028957 | 65027392 | ID=MS.gene056234 |
chr8.1 | mRNA | 65027392 | 65028957 | 65027392 | ID=MS.gene056234.t1;Parent=MS.gene056234 |
chr8.1 | exon | 65027392 | 65027473 | 65027392 | ID=MS.gene056234.t1.exon1;Parent=MS.gene056234.t1 |
chr8.1 | CDS | 65027392 | 65027473 | 65027392 | ID=cds.MS.gene056234.t1;Parent=MS.gene056234.t1 |
chr8.1 | exon | 65027560 | 65027751 | 65027560 | ID=MS.gene056234.t1.exon2;Parent=MS.gene056234.t1 |
chr8.1 | CDS | 65027560 | 65027751 | 65027560 | ID=cds.MS.gene056234.t1;Parent=MS.gene056234.t1 |
chr8.1 | exon | 65028653 | 65028957 | 65028653 | ID=MS.gene056234.t1.exon3;Parent=MS.gene056234.t1 |
chr8.1 | CDS | 65028653 | 65028957 | 65028653 | ID=cds.MS.gene056234.t1;Parent=MS.gene056234.t1 |
Gene Sequence |
Protein sequence |