Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056381.t1 | KEH30327.1 | 82.1 | 513 | 88 | 3 | 3 | 514 | 71 | 580 | 2.80E-159 | 572 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056381.t1 | O94481 | 33.8 | 130 | 78 | 4 | 373 | 499 | 380 | 504 | 7.2e-07 | 57.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056381.t1 | A0A072UKV6 | 82.1 | 513 | 88 | 3 | 3 | 514 | 71 | 580 | 2.0e-159 | 572.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene056381.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056381 | MS.gene47779 | 0.819003 | 1.46E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056381.t1 | MTR_4g067250 | 91.033 | 513 | 42 | 3 | 3 | 514 | 71 | 580 | 0.0 | 884 |
| MS.gene056381.t1 | MTR_8g091830 | 54.750 | 400 | 151 | 10 | 141 | 514 | 363 | 758 | 6.53e-91 | 294 |
| MS.gene056381.t1 | MTR_8g091830 | 54.545 | 396 | 154 | 9 | 141 | 514 | 365 | 756 | 1.85e-87 | 286 |
| MS.gene056381.t1 | MTR_8g091850 | 44.590 | 305 | 110 | 8 | 131 | 432 | 46 | 294 | 5.10e-53 | 181 |
| MS.gene056381.t1 | MTR_8g091840 | 56.140 | 57 | 24 | 1 | 459 | 514 | 9 | 65 | 3.65e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056381.t1 | AT4G39160 | 38.372 | 258 | 137 | 7 | 198 | 446 | 277 | 521 | 7.89e-38 | 147 |
| MS.gene056381.t1 | AT4G39160 | 38.372 | 258 | 137 | 7 | 198 | 446 | 277 | 521 | 7.89e-38 | 147 |
| MS.gene056381.t1 | AT4G39160 | 38.372 | 258 | 137 | 7 | 198 | 446 | 277 | 521 | 1.04e-37 | 147 |
Find 89 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTCAATCAATTTCTCTT+AGG | 0.163126 | 4.1:-34025928 | MS.gene056381:CDS |
| TCTTGCAATTGCAGAAAATA+AGG | 0.274714 | 4.1:-34025900 | MS.gene056381:CDS |
| TCTATATTGTTACAAATATA+AGG | 0.289417 | 4.1:+34026269 | None:intergenic |
| CACAGTGGACCAGGCTCTGC+TGG | 0.334784 | 4.1:-34025966 | MS.gene056381:intron |
| GTTGAATCATTGTAAAATCT+AGG | 0.346657 | 4.1:+34025011 | None:intergenic |
| ACAAGTCACCTAGGGTAAAA+TGG | 0.357410 | 4.1:-34025224 | MS.gene056381:CDS |
| CATGCTACCTCGTCTGTAGA+TGG | 0.366233 | 4.1:-34027066 | MS.gene056381:CDS |
| CTGCTGGATGATTATGAACT+TGG | 0.367304 | 4.1:-34025950 | MS.gene056381:CDS |
| GGCTTCCTGATTTGCATTAG+TGG | 0.370648 | 4.1:+34024700 | None:intergenic |
| CCCGAGACCAACCTCAATAA+TGG | 0.372518 | 4.1:-34026997 | MS.gene056381:intron |
| ACCATTATTGAGGTTGGTCT+CGG | 0.372588 | 4.1:+34026996 | None:intergenic |
| CACTTCTGAAGCCAACATTT+AGG | 0.375419 | 4.1:+34026745 | None:intergenic |
| TTCTACCACTAATGCAAATC+AGG | 0.389275 | 4.1:-34024705 | MS.gene056381:CDS |
| TTCTCAATCAATTTCTCTTA+GGG | 0.392485 | 4.1:-34025927 | MS.gene056381:CDS |
| TACTAGCTTGATCATACTCT+TGG | 0.398834 | 4.1:+34025298 | None:intergenic |
| GTTGGCTTCAGAAGTGCTTC+AGG | 0.403637 | 4.1:-34026738 | MS.gene056381:CDS |
| GGGGATTTCTTTCATGATGC+TGG | 0.405910 | 4.1:-34025372 | MS.gene056381:CDS |
| AAAAGTTCTCTCATTCTTCT+CGG | 0.409991 | 4.1:-34026085 | MS.gene056381:CDS |
| ACATAGGCTCTGAAGGAGTT+TGG | 0.412678 | 4.1:-34025034 | MS.gene056381:intron |
| GCTATTAATAGTCGTTCATC+AGG | 0.426472 | 4.1:-34024905 | MS.gene056381:intron |
| CGTAAAAGATCATCTGTTGC+TGG | 0.432583 | 4.1:-34026401 | MS.gene056381:CDS |
| TTTGACCTTCGGCGCAAACT+TGG | 0.442856 | 4.1:+34027128 | None:intergenic |
| GTGACTTGTCCCTAAAAGAA+TGG | 0.456507 | 4.1:+34025238 | None:intergenic |
| AACATAACTTACCATTATTG+AGG | 0.456653 | 4.1:+34026986 | None:intergenic |
| AAACTCAAACTCATTAATTG+AGG | 0.471340 | 4.1:-34026312 | MS.gene056381:CDS |
| GTGATGATGACTTACGGAAA+TGG | 0.472624 | 4.1:-34024041 | MS.gene056381:CDS |
| ATTGAGGTTGGTCTCGGGAA+TGG | 0.473304 | 4.1:+34027002 | None:intergenic |
| AGAGTGCATACATTAATTCC+AGG | 0.475172 | 4.1:+34024650 | None:intergenic |
| TTTCATTCCCACAGTGGACC+AGG | 0.476047 | 4.1:-34025975 | MS.gene056381:intron |
| CTGTGTTGCTTACCTTCGAT+TGG | 0.477352 | 4.1:+34025739 | None:intergenic |
| CAGTGCTGATGTTAAAGATC+AGG | 0.478050 | 4.1:-34024106 | MS.gene056381:CDS |
| TGCAGATATTTCCTTTCGTA+AGG | 0.479200 | 4.1:+34027095 | None:intergenic |
| AATGGAATGAATGTTGTTCT+CGG | 0.482678 | 4.1:+34026695 | None:intergenic |
| TGACTTGTCCCTAAAAGAAT+GGG | 0.487889 | 4.1:+34025239 | None:intergenic |
| TAACTTACCATTATTGAGGT+TGG | 0.489810 | 4.1:+34026990 | None:intergenic |
| CCATTATTGAGGTTGGTCTC+GGG | 0.494784 | 4.1:+34026997 | None:intergenic |
| CATTACTAACCACGTGCAGC+AGG | 0.498380 | 4.1:+34027262 | None:intergenic |
| GCATTAGTGGTAGAAATTTG+TGG | 0.499145 | 4.1:+34024713 | None:intergenic |
| TGTTGCTTACCTTCGATTGG+TGG | 0.499150 | 4.1:+34025742 | None:intergenic |
| TCACTATCATCAGATTGCTC+TGG | 0.502518 | 4.1:+34024060 | None:intergenic |
| TGCAGAAAATAAGGAGCGAC+CGG | 0.506681 | 4.1:-34025891 | MS.gene056381:CDS |
| TAGTGCCAAGTTTGCGCCGA+AGG | 0.506770 | 4.1:-34027133 | MS.gene056381:CDS |
| TCATTAATTGAGGATGATGA+TGG | 0.509072 | 4.1:-34026302 | MS.gene056381:CDS |
| ATAGCATCAGTTATTCGTAA+AGG | 0.518506 | 4.1:+34024923 | None:intergenic |
| AAATATTTAGCTGCAGTGGT+GGG | 0.523222 | 4.1:-34025392 | MS.gene056381:intron |
| TTTAAAATATTTAGCTGCAG+TGG | 0.528589 | 4.1:-34025396 | MS.gene056381:intron |
| CATAATCATCCAGCAGAGCC+TGG | 0.529086 | 4.1:+34025957 | None:intergenic |
| TCTCAGGCAAACCTGCCTCA+TGG | 0.530777 | 4.1:-34027314 | MS.gene056381:intron |
| CTCTGGACTATGATAAGCCA+TGG | 0.534113 | 4.1:+34024077 | None:intergenic |
| GGAATGGATTTAGTGACGGT+GGG | 0.535901 | 4.1:+34027018 | None:intergenic |
| AAAATATTTAGCTGCAGTGG+TGG | 0.541517 | 4.1:-34025393 | MS.gene056381:intron |
| AATGGATTTAGTGACGGTGG+GGG | 0.543456 | 4.1:+34027020 | None:intergenic |
| CTGTCAAGGAATGCAGTGGA+TGG | 0.545069 | 4.1:+34026807 | None:intergenic |
| AAGATCATCTGTTGCTGGTG+TGG | 0.557955 | 4.1:-34026396 | MS.gene056381:CDS |
| ATGCTACCTCGTCTGTAGAT+GGG | 0.560684 | 4.1:-34027065 | MS.gene056381:CDS |
| AATATTTAGCTGCAGTGGTG+GGG | 0.567750 | 4.1:-34025391 | MS.gene056381:intron |
| GTCAAGGAATGCAGTGGATG+GGG | 0.578734 | 4.1:+34026809 | None:intergenic |
| ATGATAGTGATGATGACTTA+CGG | 0.580140 | 4.1:-34024047 | MS.gene056381:CDS |
| TTGCAAGACAGCCTAAATGT+TGG | 0.580193 | 4.1:-34026756 | MS.gene056381:CDS |
| TTTATTAGGATGCTAATGAG+AGG | 0.585716 | 4.1:-34026442 | MS.gene056381:intron |
| ATCAAAACAGTCCTTACGAA+AGG | 0.590154 | 4.1:-34027106 | MS.gene056381:CDS |
| GAATGGATTTAGTGACGGTG+GGG | 0.591826 | 4.1:+34027019 | None:intergenic |
| ACTACTGAAGACATGTCACC+TGG | 0.592887 | 4.1:-34024668 | MS.gene056381:CDS |
| CTCGGGAATGGATTTAGTGA+CGG | 0.594357 | 4.1:+34027014 | None:intergenic |
| AAATGATGACGAGGACGAAG+TGG | 0.594931 | 4.1:-34026234 | MS.gene056381:CDS |
| GTCTTCAGTAGTGTCTTCAG+TGG | 0.600402 | 4.1:+34024679 | None:intergenic |
| TGCTGATGTTAAAGATCAGG+AGG | 0.606209 | 4.1:-34024103 | MS.gene056381:CDS |
| CAAAATCTTCCACCAATCGA+AGG | 0.613148 | 4.1:-34025751 | MS.gene056381:intron |
| GGGAATGGATTTAGTGACGG+TGG | 0.613872 | 4.1:+34027017 | None:intergenic |
| CTTGAAGCTCCTGCTGCACG+TGG | 0.616756 | 4.1:-34027271 | MS.gene056381:intron |
| TGTCAAGGAATGCAGTGGAT+GGG | 0.621373 | 4.1:+34026808 | None:intergenic |
| TTCGGCGCAAACTTGGCACT+AGG | 0.622860 | 4.1:+34027135 | None:intergenic |
| TAAAGATCAGGAGGATCCCA+TGG | 0.630077 | 4.1:-34024094 | MS.gene056381:CDS |
| ATCATCTGTTGCTGGTGTGG+AGG | 0.632127 | 4.1:-34026393 | MS.gene056381:CDS |
| ATATTGTTACAAATATAAGG+AGG | 0.636102 | 4.1:+34026272 | None:intergenic |
| AGAAAATAAGGAGCGACCGG+AGG | 0.647366 | 4.1:-34025888 | MS.gene056381:intron |
| AGAATGGGAATTGTATAAAG+CGG | 0.648772 | 4.1:+34025254 | None:intergenic |
| GTTGCTGTCAAGGAATGCAG+TGG | 0.651362 | 4.1:+34026803 | None:intergenic |
| TCTGGACTATGATAAGCCAT+GGG | 0.651572 | 4.1:+34024078 | None:intergenic |
| TATTGTTACAAATATAAGGA+GGG | 0.653546 | 4.1:+34026273 | None:intergenic |
| TACTTCCGGAAAAGTACAAG+AGG | 0.653833 | 4.1:-34026670 | MS.gene056381:intron |
| AGAGGTTGCAACAACTGAGG+AGG | 0.662600 | 4.1:-34024130 | MS.gene056381:CDS |
| ATGACCGTGATAAAAGCTCA+AGG | 0.662857 | 4.1:-34026370 | MS.gene056381:CDS |
| TTATTCGTAAAGGATGATGT+CGG | 0.671321 | 4.1:+34024933 | None:intergenic |
| TTATTGCTTACGGTATGGCG+AGG | 0.673828 | 4.1:-34027397 | None:intergenic |
| GGAAGAGGTTGCAACAACTG+AGG | 0.674245 | 4.1:-34024133 | MS.gene056381:CDS |
| TGCTGGTGCTAATAGTGAAG+AGG | 0.679934 | 4.1:-34025355 | MS.gene056381:CDS |
| ACTTGAAGAAAATGATGACG+AGG | 0.685696 | 4.1:-34026243 | MS.gene056381:CDS |
| GTTCTTCCCATCTACAGACG+AGG | 0.708904 | 4.1:+34027059 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATTAAATTAATTAAGA+TGG | + | chr4.1:34024069-34024088 | None:intergenic | 10.0% |
| !! | TTAAAAAAATATAATTGACA+AGG | + | chr4.1:34025837-34025856 | None:intergenic | 10.0% |
| !!! | TTATTTTTTATTTATACGTA+CGG | - | chr4.1:34024177-34024196 | MS.gene056381:intron | 10.0% |
| !!! | TTTCATTTGTAATTTTTATT+AGG | - | chr4.1:34024944-34024963 | MS.gene056381:CDS | 10.0% |
| !! | AATATAAATCTATTTACTAC+TGG | + | chr4.1:34025979-34025998 | None:intergenic | 15.0% |
| !! | TAAGAAATATTACAATTATG+TGG | + | chr4.1:34027196-34027215 | None:intergenic | 15.0% |
| !! | TCTATATTGTTACAAATATA+AGG | + | chr4.1:34025134-34025153 | None:intergenic | 15.0% |
| !!! | CATTCATTTTTTTAAAACAT+AGG | - | chr4.1:34026350-34026369 | MS.gene056381:CDS | 15.0% |
| !!! | CTATGTTTTAAAAAAATGAA+TGG | + | chr4.1:34026352-34026371 | None:intergenic | 15.0% |
| !!! | CTTAATTAATTTAATTTCTC+AGG | - | chr4.1:34024070-34024089 | MS.gene056381:CDS | 15.0% |
| !!! | TTGTTTTGTTTTATATTTTG+AGG | - | chr4.1:34026777-34026796 | MS.gene056381:CDS | 15.0% |
| !! | AAGTTCAAAAAAGAAATATG+TGG | - | chr4.1:34025220-34025239 | MS.gene056381:CDS | 20.0% |
| !! | ATATTAGGGTTTAAATTACA+TGG | + | chr4.1:34026978-34026997 | None:intergenic | 20.0% |
| !! | ATATTGTTACAAATATAAGG+AGG | + | chr4.1:34025131-34025150 | None:intergenic | 20.0% |
| !! | GATATTTGTGAGTTAAAATT+TGG | - | chr4.1:34026883-34026902 | MS.gene056381:intron | 20.0% |
| !! | TATTGTTACAAATATAAGGA+GGG | + | chr4.1:34025130-34025149 | None:intergenic | 20.0% |
| !! | TTCTAAATCTATAAATGAAG+TGG | + | chr4.1:34027158-34027177 | None:intergenic | 20.0% |
| !!! | AGATCATCATATTTTTAAGT+CGG | - | chr4.1:34026650-34026669 | MS.gene056381:intron | 20.0% |
| !!! | ATGATTCAACAAATTTTTTC+TGG | - | chr4.1:34026402-34026421 | MS.gene056381:CDS | 20.0% |
| !!! | ATTACTAATTTTGTCTTTTC+TGG | - | chr4.1:34026285-34026304 | MS.gene056381:CDS | 20.0% |
| !!! | ATTATATTGTTTTTGTAGCT+CGG | - | chr4.1:34024242-34024261 | MS.gene056381:intron | 20.0% |
| ! | AAAAAAAGCAAGAAGGAAAA+TGG | - | chr4.1:34025263-34025282 | MS.gene056381:CDS | 25.0% |
| ! | AAACTCAAACTCATTAATTG+AGG | - | chr4.1:34025088-34025107 | MS.gene056381:intron | 25.0% |
| ! | AACATAACTTACCATTATTG+AGG | + | chr4.1:34024417-34024436 | None:intergenic | 25.0% |
| ! | AAGAAATATGTGGCTAAAAA+TGG | - | chr4.1:34025230-34025249 | MS.gene056381:CDS | 25.0% |
| ! | ATATGACGTAAAAACTTTCA+AGG | - | chr4.1:34027099-34027118 | MS.gene056381:CDS | 25.0% |
| ! | ATGATGGTAAATAAGATGTT+TGG | + | chr4.1:34025956-34025975 | None:intergenic | 25.0% |
| ! | CTAGATATGAAATGATTCAA+TGG | + | chr4.1:34024505-34024524 | None:intergenic | 25.0% |
| ! | GTTGAATCATTGTAAAATCT+AGG | + | chr4.1:34026392-34026411 | None:intergenic | 25.0% |
| ! | TAAAATGTTATTCCACATCA+AGG | + | chr4.1:34026601-34026620 | None:intergenic | 25.0% |
| ! | TGTAAAAAATCAGCTAATGT+AGG | + | chr4.1:34024823-34024842 | None:intergenic | 25.0% |
| ! | TTCTCAATCAATTTCTCTTA+GGG | - | chr4.1:34025473-34025492 | MS.gene056381:intron | 25.0% |
| !! | AATTGTTATTAGTAGGCTTA+TGG | - | chr4.1:34025576-34025595 | MS.gene056381:intron | 25.0% |
| !! | ATACAATTCCCATTCTTTTA+GGG | - | chr4.1:34026153-34026172 | MS.gene056381:CDS | 25.0% |
| !! | ATTTTGTCTTTTCTGGATTT+AGG | - | chr4.1:34026292-34026311 | MS.gene056381:CDS | 25.0% |
| !! | GAATACCTCATAAAACTTTT+CGG | + | chr4.1:34026215-34026234 | None:intergenic | 25.0% |
| !! | TATACAATTCCCATTCTTTT+AGG | - | chr4.1:34026152-34026171 | MS.gene056381:CDS | 25.0% |
| !! | TCTTAGCAATTGTTATTAGT+AGG | - | chr4.1:34025569-34025588 | MS.gene056381:intron | 25.0% |
| !! | TGAGAATCCATTTTATACAA+GGG | - | chr4.1:34027048-34027067 | MS.gene056381:CDS | 25.0% |
| !! | TGTATAAAATGGATTCTCAA+GGG | + | chr4.1:34027047-34027066 | None:intergenic | 25.0% |
| !! | TTGAGAATCCATTTTATACA+AGG | - | chr4.1:34027047-34027066 | MS.gene056381:CDS | 25.0% |
| !! | TTGTATAAAATGGATTCTCA+AGG | + | chr4.1:34027048-34027067 | None:intergenic | 25.0% |
| !! | TTTAAAATATTTAGCTGCAG+TGG | - | chr4.1:34026004-34026023 | MS.gene056381:intron | 25.0% |
| !!! | ATTCATTCCATTTTTACTTC+CGG | - | chr4.1:34024716-34024735 | MS.gene056381:CDS | 25.0% |
| !!! | TTTTGAGGTCTATATTCATT+TGG | - | chr4.1:34026792-34026811 | MS.gene056381:CDS | 25.0% |
| AAAAGTTCTCTCATTCTTCT+CGG | - | chr4.1:34025315-34025334 | MS.gene056381:CDS | 30.0% | |
| AAATCGTGAAAGCTAACAAA+GGG | + | chr4.1:34025810-34025829 | None:intergenic | 30.0% | |
| AAGAGTCTTGAATATTTGCA+AGG | + | chr4.1:34027231-34027250 | None:intergenic | 30.0% | |
| AATGGAATGAATGTTGTTCT+CGG | + | chr4.1:34024708-34024727 | None:intergenic | 30.0% | |
| AGAATGGGAATTGTATAAAG+CGG | + | chr4.1:34026149-34026168 | None:intergenic | 30.0% | |
| AGCATACAAAAAAAGCAAGA+AGG | - | chr4.1:34025256-34025275 | MS.gene056381:CDS | 30.0% | |
| ATAGCATCAGTTATTCGTAA+AGG | + | chr4.1:34026480-34026499 | None:intergenic | 30.0% | |
| ATATACGCTGCTTCTATATT+AGG | + | chr4.1:34026993-34027012 | None:intergenic | 30.0% | |
| ATCTATTTACTACTGGATGA+TGG | + | chr4.1:34025972-34025991 | None:intergenic | 30.0% | |
| ATGAGAGGAAAAAATCTCTA+AGG | - | chr4.1:34024973-34024992 | MS.gene056381:CDS | 30.0% | |
| CACACATATCTTAACTTCTT+AGG | + | chr4.1:34025747-34025766 | None:intergenic | 30.0% | |
| CATATAGTACATGATCAGTA+GGG | - | chr4.1:34026555-34026574 | MS.gene056381:intron | 30.0% | |
| GAAGTAAATTTGAGTAACGA+AGG | + | chr4.1:34026956-34026975 | None:intergenic | 30.0% | |
| GTCATATCACATATACATGA+TGG | + | chr4.1:34027086-34027105 | None:intergenic | 30.0% | |
| GTGTATTATCAAAGCAGTAT+TGG | - | chr4.1:34025691-34025710 | MS.gene056381:intron | 30.0% | |
| GTTCTCAATCAATTTCTCTT+AGG | - | chr4.1:34025472-34025491 | MS.gene056381:intron | 30.0% | |
| TAAATCGTGAAAGCTAACAA+AGG | + | chr4.1:34025811-34025830 | None:intergenic | 30.0% | |
| TAACTTACCATTATTGAGGT+TGG | + | chr4.1:34024413-34024432 | None:intergenic | 30.0% | |
| TATACGCTGCTTCTATATTA+GGG | + | chr4.1:34026992-34027011 | None:intergenic | 30.0% | |
| TATCATCAAAAAGATCCATG+AGG | + | chr4.1:34024104-34024123 | None:intergenic | 30.0% | |
| TCATATAGTACATGATCAGT+AGG | - | chr4.1:34026554-34026573 | MS.gene056381:intron | 30.0% | |
| TCATTAATTGAGGATGATGA+TGG | - | chr4.1:34025098-34025117 | MS.gene056381:intron | 30.0% | |
| TCTTGCAATTGCAGAAAATA+AGG | - | chr4.1:34025500-34025519 | MS.gene056381:intron | 30.0% | |
| TGTTGTTCCCTTGTATAAAA+TGG | + | chr4.1:34027058-34027077 | None:intergenic | 30.0% | |
| TTATTCGTAAAGGATGATGT+CGG | + | chr4.1:34026470-34026489 | None:intergenic | 30.0% | |
| TTGCTAAGAATTGTAACACA+AGG | + | chr4.1:34025558-34025577 | None:intergenic | 30.0% | |
| TTTATTAGGATGCTAATGAG+AGG | - | chr4.1:34024958-34024977 | MS.gene056381:CDS | 30.0% | |
| ! | AATGTCTACTTCTTTTCCTA+TGG | + | chr4.1:34024857-34024876 | None:intergenic | 30.0% |
| ! | AGAAGAATGAGAGAACTTTT+TGG | + | chr4.1:34025315-34025334 | None:intergenic | 30.0% |
| ! | ATGATAGTGATGATGACTTA+CGG | - | chr4.1:34027353-34027372 | MS.gene056381:intron | 30.0% |
| ! | CCAAAATTAGCACTTTTACT+TGG | - | chr4.1:34026924-34026943 | MS.gene056381:intron | 30.0% |
| ! | GAAGAATGAGAGAACTTTTT+GGG | + | chr4.1:34025314-34025333 | None:intergenic | 30.0% |
| ! | GCATTGACAACTATTAAATG+TGG | - | chr4.1:34024524-34024543 | MS.gene056381:intron | 30.0% |
| ! | TACTTTTCCGGAAGTAAAAA+TGG | + | chr4.1:34024726-34024745 | None:intergenic | 30.0% |
| !! | AGATACCGAAAAGTTTTATG+AGG | - | chr4.1:34026207-34026226 | MS.gene056381:CDS | 30.0% |
| !!! | ACTTTTAGTTCAGATGATGA+TGG | - | chr4.1:34026070-34026089 | MS.gene056381:CDS | 30.0% |
| !!! | CCAAGTAAAAGTGCTAATTT+TGG | + | chr4.1:34026927-34026946 | None:intergenic | 30.0% |
| !!! | TTTTAAAACATAGGCTCTGA+AGG | - | chr4.1:34026359-34026378 | MS.gene056381:CDS | 30.0% |
| AAAATATTTAGCTGCAGTGG+TGG | - | chr4.1:34026007-34026026 | MS.gene056381:intron | 35.0% | |
| AAATATTTAGCTGCAGTGGT+GGG | - | chr4.1:34026008-34026027 | MS.gene056381:intron | 35.0% | |
| AATCAGCTAATGTAGGACTA+CGG | + | chr4.1:34024816-34024835 | None:intergenic | 35.0% | |
| AGAGTGCATACATTAATTCC+AGG | + | chr4.1:34026753-34026772 | None:intergenic | 35.0% | |
| ATCAAAACAGTCCTTACGAA+AGG | - | chr4.1:34024294-34024313 | MS.gene056381:intron | 35.0% | |
| GCATTAGTGGTAGAAATTTG+TGG | + | chr4.1:34026690-34026709 | None:intergenic | 35.0% | |
| GCTATTAATAGTCGTTCATC+AGG | - | chr4.1:34026495-34026514 | MS.gene056381:intron | 35.0% | |
| TCGTTGTATGTGATTGAGTT+AGG | - | chr4.1:34025772-34025791 | MS.gene056381:intron | 35.0% | |
| TCTTTATCTACTCCTTGATG+TGG | - | chr4.1:34026586-34026605 | MS.gene056381:intron | 35.0% | |
| TGCAGATATTTCCTTTCGTA+AGG | + | chr4.1:34024308-34024327 | None:intergenic | 35.0% | |
| TTCTACCACTAATGCAAATC+AGG | - | chr4.1:34026695-34026714 | MS.gene056381:CDS | 35.0% | |
| TTGTTTCCCTATGCAGAAAA+AGG | - | chr4.1:34025623-34025642 | MS.gene056381:intron | 35.0% | |
| TTTCTGCATAGGGAAACAAA+TGG | + | chr4.1:34025622-34025641 | None:intergenic | 35.0% | |
| ! | AAGTATTTTCATTCCCACAG+TGG | - | chr4.1:34025419-34025438 | MS.gene056381:intron | 35.0% |
| ! | ACTTGAAGAAAATGATGACG+AGG | - | chr4.1:34025157-34025176 | MS.gene056381:intron | 35.0% |
| ! | GTCTTTTCTGGATTTAGGAA+TGG | - | chr4.1:34026297-34026316 | MS.gene056381:CDS | 35.0% |
| ! | TACTAGCTTGATCATACTCT+TGG | + | chr4.1:34026105-34026124 | None:intergenic | 35.0% |
| ! | TGACTTGTCCCTAAAAGAAT+GGG | + | chr4.1:34026164-34026183 | None:intergenic | 35.0% |
| ! | TTCTACCTCTTGTACTTTTC+CGG | + | chr4.1:34024738-34024757 | None:intergenic | 35.0% |
| !!! | GACTGTTTTGATTTGACCTT+CGG | + | chr4.1:34024286-34024305 | None:intergenic | 35.0% |
| AATATTTAGCTGCAGTGGTG+GGG | - | chr4.1:34026009-34026028 | MS.gene056381:intron | 40.0% | |
| AATTCACTGCACATCTTACG+TGG | - | chr4.1:34025928-34025947 | MS.gene056381:CDS | 40.0% | |
| ACAAGTCACCTAGGGTAAAA+TGG | - | chr4.1:34026176-34026195 | MS.gene056381:CDS | 40.0% | |
| ACGTACGGTTGTTATGTACT+TGG | - | chr4.1:34024192-34024211 | MS.gene056381:intron | 40.0% | |
| ATCAAAAAGATCCATGAGGC+AGG | + | chr4.1:34024100-34024119 | None:intergenic | 40.0% | |
| ATGACCGTGATAAAAGCTCA+AGG | - | chr4.1:34025030-34025049 | MS.gene056381:CDS | 40.0% | |
| ATGTGCGTCTTTATTGTGCT+AGG | + | chr4.1:34027130-34027149 | None:intergenic | 40.0% | |
| CAAAATCTTCCACCAATCGA+AGG | - | chr4.1:34025649-34025668 | MS.gene056381:intron | 40.0% | |
| CGTAAAAGATCATCTGTTGC+TGG | - | chr4.1:34024999-34025018 | MS.gene056381:CDS | 40.0% | |
| CTCTTGTAATCTGAATGTGC+AGG | - | chr4.1:34027246-34027265 | MS.gene056381:intron | 40.0% | |
| CTGCTGGATGATTATGAACT+TGG | - | chr4.1:34025450-34025469 | MS.gene056381:intron | 40.0% | |
| TAATCTGAATGTGCAGGAAG+AGG | - | chr4.1:34027252-34027271 | MS.gene056381:intron | 40.0% | |
| TAGTTGAGAATACCTACCTC+CGG | + | chr4.1:34025531-34025550 | None:intergenic | 40.0% | |
| TCACTATCATCAGATTGCTC+TGG | + | chr4.1:34027343-34027362 | None:intergenic | 40.0% | |
| TCTGGACTATGATAAGCCAT+GGG | + | chr4.1:34027325-34027344 | None:intergenic | 40.0% | |
| TGCTGATGTTAAAGATCAGG+AGG | - | chr4.1:34027297-34027316 | MS.gene056381:CDS | 40.0% | |
| TTACAGCAAGACGTTACCAT+AGG | - | chr4.1:34024838-34024857 | MS.gene056381:intron | 40.0% | |
| TTACTTGTCTGTGCTCTTCA+TGG | - | chr4.1:34026531-34026550 | MS.gene056381:intron | 40.0% | |
| TTGCAAGACAGCCTAAATGT+TGG | - | chr4.1:34024644-34024663 | MS.gene056381:intron | 40.0% | |
| TTTCCCTATGCAGAAAAAGG+AGG | - | chr4.1:34025626-34025645 | MS.gene056381:intron | 40.0% | |
| ! | AAAATGGATTCTCAAGGGAG+CGG | + | chr4.1:34027042-34027061 | None:intergenic | 40.0% |
| ! | GCAAACTTTTGTTGCTGTCA+AGG | + | chr4.1:34024610-34024629 | None:intergenic | 40.0% |
| ! | GTGACTTGTCCCTAAAAGAA+TGG | + | chr4.1:34026165-34026184 | None:intergenic | 40.0% |
| ! | GTGATGATGACTTACGGAAA+TGG | - | chr4.1:34027359-34027378 | MS.gene056381:intron | 40.0% |
| ! | TACTTCCGGAAAAGTACAAG+AGG | - | chr4.1:34024730-34024749 | MS.gene056381:CDS | 40.0% |
| ! | TGTTTCGACCATTTTACCCT+AGG | + | chr4.1:34026187-34026206 | None:intergenic | 40.0% |
| ! | TTGCCTCCTTTTTCTGCATA+GGG | + | chr4.1:34025632-34025651 | None:intergenic | 40.0% |
| ! | TTTGCCTCCTTTTTCTGCAT+AGG | + | chr4.1:34025633-34025652 | None:intergenic | 40.0% |
| !! | ACCATTATTGAGGTTGGTCT+CGG | + | chr4.1:34024407-34024426 | None:intergenic | 40.0% |
| !! | CACTTCTGAAGCCAACATTT+AGG | + | chr4.1:34024658-34024677 | None:intergenic | 40.0% |
| !! | CAGTGCTGATGTTAAAGATC+AGG | - | chr4.1:34027294-34027313 | MS.gene056381:CDS | 40.0% |
| !! | GAATGAGAGAACTTTTTGGG+TGG | + | chr4.1:34025311-34025330 | None:intergenic | 40.0% |
| !! | TTTTAGGGACAAGTCACCTA+GGG | - | chr4.1:34026168-34026187 | MS.gene056381:CDS | 40.0% |
| AAGATCATCTGTTGCTGGTG+TGG | - | chr4.1:34025004-34025023 | MS.gene056381:CDS | 45.0% | |
| ACTACTGAAGACATGTCACC+TGG | - | chr4.1:34026732-34026751 | MS.gene056381:CDS | 45.0% | |
| ATGCTACCTCGTCTGTAGAT+GGG | - | chr4.1:34024335-34024354 | MS.gene056381:intron | 45.0% | |
| CTCTGGACTATGATAAGCCA+TGG | + | chr4.1:34027326-34027345 | None:intergenic | 45.0% | |
| GGGGATTTCTTTCATGATGC+TGG | - | chr4.1:34026028-34026047 | MS.gene056381:intron | 45.0% | |
| GTCTTCAGTAGTGTCTTCAG+TGG | + | chr4.1:34026724-34026743 | None:intergenic | 45.0% | |
| TAAAGATCAGGAGGATCCCA+TGG | - | chr4.1:34027306-34027325 | MS.gene056381:CDS | 45.0% | |
| TCTCGGCGAAGAAAAAGACA+AGG | - | chr4.1:34025332-34025351 | MS.gene056381:CDS | 45.0% | |
| TGCAGAAAATAAGGAGCGAC+CGG | - | chr4.1:34025509-34025528 | MS.gene056381:intron | 45.0% | |
| TGCTGCACGTGGTTAGTAAT+GGG | - | chr4.1:34024140-34024159 | MS.gene056381:intron | 45.0% | |
| TGTCAAGGAATGCAGTGGAT+GGG | + | chr4.1:34024595-34024614 | None:intergenic | 45.0% | |
| ! | AAATGATGACGAGGACGAAG+TGG | - | chr4.1:34025166-34025185 | MS.gene056381:intron | 45.0% |
| ! | AAATGGATTCTCAAGGGAGC+GGG | + | chr4.1:34027041-34027060 | None:intergenic | 45.0% |
| ! | AATGGATTTAGTGACGGTGG+GGG | + | chr4.1:34024383-34024402 | None:intergenic | 45.0% |
| ! | CTCGGGAATGGATTTAGTGA+CGG | + | chr4.1:34024389-34024408 | None:intergenic | 45.0% |
| ! | GAATGGATTTAGTGACGGTG+GGG | + | chr4.1:34024384-34024403 | None:intergenic | 45.0% |
| ! | GCTGCCTTGAGCTTTTATCA+CGG | + | chr4.1:34025037-34025056 | None:intergenic | 45.0% |
| ! | GGAATGGATTTAGTGACGGT+GGG | + | chr4.1:34024385-34024404 | None:intergenic | 45.0% |
| ! | GGCTTCCTGATTTGCATTAG+TGG | + | chr4.1:34026703-34026722 | None:intergenic | 45.0% |
| ! | TGCTGGTGCTAATAGTGAAG+AGG | - | chr4.1:34026045-34026064 | MS.gene056381:intron | 45.0% |
| ! | TGTTGCTTACCTTCGATTGG+TGG | + | chr4.1:34025661-34025680 | None:intergenic | 45.0% |
| !! | ACATAGGCTCTGAAGGAGTT+TGG | - | chr4.1:34026366-34026385 | MS.gene056381:CDS | 45.0% |
| !! | CCATTATTGAGGTTGGTCTC+GGG | + | chr4.1:34024406-34024425 | None:intergenic | 45.0% |
| !! | CTGTGTTGCTTACCTTCGAT+TGG | + | chr4.1:34025664-34025683 | None:intergenic | 45.0% |
| !! | CTTTTAGGGACAAGTCACCT+AGG | - | chr4.1:34026167-34026186 | MS.gene056381:CDS | 45.0% |
| AGAAAATAAGGAGCGACCGG+AGG | - | chr4.1:34025512-34025531 | MS.gene056381:intron | 50.0% | |
| AGAGGTTGCAACAACTGAGG+AGG | - | chr4.1:34027270-34027289 | MS.gene056381:intron | 50.0% | |
| ATCATCTGTTGCTGGTGTGG+AGG | - | chr4.1:34025007-34025026 | MS.gene056381:CDS | 50.0% | |
| CATAATCATCCAGCAGAGCC+TGG | + | chr4.1:34025446-34025465 | None:intergenic | 50.0% | |
| CATGCTACCTCGTCTGTAGA+TGG | - | chr4.1:34024334-34024353 | MS.gene056381:intron | 50.0% | |
| CATTACTAACCACGTGCAGC+AGG | + | chr4.1:34024141-34024160 | None:intergenic | 50.0% | |
| CCCGAGACCAACCTCAATAA+TGG | - | chr4.1:34024403-34024422 | MS.gene056381:intron | 50.0% | |
| CTGCTGCACGTGGTTAGTAA+TGG | - | chr4.1:34024139-34024158 | MS.gene056381:intron | 50.0% | |
| CTGTCAAGGAATGCAGTGGA+TGG | + | chr4.1:34024596-34024615 | None:intergenic | 50.0% | |
| GGAAGAGGTTGCAACAACTG+AGG | - | chr4.1:34027267-34027286 | MS.gene056381:intron | 50.0% | |
| GTCAAGGAATGCAGTGGATG+GGG | + | chr4.1:34024594-34024613 | None:intergenic | 50.0% | |
| GTTCTTCCCATCTACAGACG+AGG | + | chr4.1:34024344-34024363 | None:intergenic | 50.0% | |
| GTTGCTGTCAAGGAATGCAG+TGG | + | chr4.1:34024600-34024619 | None:intergenic | 50.0% | |
| TTTCATTCCCACAGTGGACC+AGG | - | chr4.1:34025425-34025444 | MS.gene056381:intron | 50.0% | |
| TTTGACCTTCGGCGCAAACT+TGG | + | chr4.1:34024275-34024294 | None:intergenic | 50.0% | |
| ! | AATGGATTCTCAAGGGAGCG+GGG | + | chr4.1:34027040-34027059 | None:intergenic | 50.0% |
| ! | GGGAATGGATTTAGTGACGG+TGG | + | chr4.1:34024386-34024405 | None:intergenic | 50.0% |
| !! | ATTGAGGTTGGTCTCGGGAA+TGG | + | chr4.1:34024401-34024420 | None:intergenic | 50.0% |
| !! | GTTGGCTTCAGAAGTGCTTC+AGG | - | chr4.1:34024662-34024681 | MS.gene056381:CDS | 50.0% |
| AATAAGGAGCGACCGGAGGT+AGG | - | chr4.1:34025516-34025535 | MS.gene056381:intron | 55.0% | |
| ATGGATTCTCAAGGGAGCGG+GGG | + | chr4.1:34027039-34027058 | None:intergenic | 55.0% | |
| TAGTGCCAAGTTTGCGCCGA+AGG | - | chr4.1:34024267-34024286 | MS.gene056381:intron | 55.0% | |
| TCTCAGGCAAACCTGCCTCA+TGG | - | chr4.1:34024086-34024105 | MS.gene056381:CDS | 55.0% | |
| TTCGGCGCAAACTTGGCACT+AGG | + | chr4.1:34024268-34024287 | None:intergenic | 55.0% | |
| AGCAGAGCCTGGTCCACTGT+GGG | + | chr4.1:34025435-34025454 | None:intergenic | 60.0% | |
| CTTGAAGCTCCTGCTGCACG+TGG | - | chr4.1:34024129-34024148 | MS.gene056381:CDS | 60.0% | |
| CACAGTGGACCAGGCTCTGC+TGG | - | chr4.1:34025434-34025453 | MS.gene056381:intron | 65.0% | |
| CAGCAGAGCCTGGTCCACTG+TGG | + | chr4.1:34025436-34025455 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 34024017 | 34027405 | 34024017 | ID=MS.gene056381 |
| chr4.1 | mRNA | 34024017 | 34027405 | 34024017 | ID=MS.gene056381.t1;Parent=MS.gene056381 |
| chr4.1 | exon | 34027398 | 34027405 | 34027398 | ID=MS.gene056381.t1.exon1;Parent=MS.gene056381.t1 |
| chr4.1 | CDS | 34027398 | 34027405 | 34027398 | ID=cds.MS.gene056381.t1;Parent=MS.gene056381.t1 |
| chr4.1 | exon | 34027272 | 34027330 | 34027272 | ID=MS.gene056381.t1.exon2;Parent=MS.gene056381.t1 |
| chr4.1 | CDS | 34027272 | 34027330 | 34027272 | ID=cds.MS.gene056381.t1;Parent=MS.gene056381.t1 |
| chr4.1 | exon | 34026998 | 34027162 | 34026998 | ID=MS.gene056381.t1.exon3;Parent=MS.gene056381.t1 |
| chr4.1 | CDS | 34026998 | 34027162 | 34026998 | ID=cds.MS.gene056381.t1;Parent=MS.gene056381.t1 |
| chr4.1 | exon | 34026671 | 34026864 | 34026671 | ID=MS.gene056381.t1.exon4;Parent=MS.gene056381.t1 |
| chr4.1 | CDS | 34026671 | 34026864 | 34026671 | ID=cds.MS.gene056381.t1;Parent=MS.gene056381.t1 |
| chr4.1 | exon | 34026069 | 34026456 | 34026069 | ID=MS.gene056381.t1.exon5;Parent=MS.gene056381.t1 |
| chr4.1 | CDS | 34026069 | 34026456 | 34026069 | ID=cds.MS.gene056381.t1;Parent=MS.gene056381.t1 |
| chr4.1 | exon | 34025889 | 34025983 | 34025889 | ID=MS.gene056381.t1.exon6;Parent=MS.gene056381.t1 |
| chr4.1 | CDS | 34025889 | 34025983 | 34025889 | ID=cds.MS.gene056381.t1;Parent=MS.gene056381.t1 |
| chr4.1 | exon | 34025752 | 34025783 | 34025752 | ID=MS.gene056381.t1.exon7;Parent=MS.gene056381.t1 |
| chr4.1 | CDS | 34025752 | 34025783 | 34025752 | ID=cds.MS.gene056381.t1;Parent=MS.gene056381.t1 |
| chr4.1 | exon | 34025194 | 34025404 | 34025194 | ID=MS.gene056381.t1.exon8;Parent=MS.gene056381.t1 |
| chr4.1 | CDS | 34025194 | 34025404 | 34025194 | ID=cds.MS.gene056381.t1;Parent=MS.gene056381.t1 |
| chr4.1 | exon | 34024906 | 34025050 | 34024906 | ID=MS.gene056381.t1.exon9;Parent=MS.gene056381.t1 |
| chr4.1 | CDS | 34024906 | 34025050 | 34024906 | ID=cds.MS.gene056381.t1;Parent=MS.gene056381.t1 |
| chr4.1 | exon | 34024661 | 34024770 | 34024661 | ID=MS.gene056381.t1.exon10;Parent=MS.gene056381.t1 |
| chr4.1 | CDS | 34024661 | 34024770 | 34024661 | ID=cds.MS.gene056381.t1;Parent=MS.gene056381.t1 |
| chr4.1 | exon | 34024017 | 34024154 | 34024017 | ID=MS.gene056381.t1.exon11;Parent=MS.gene056381.t1 |
| chr4.1 | CDS | 34024017 | 34024154 | 34024017 | ID=cds.MS.gene056381.t1;Parent=MS.gene056381.t1 |
| Gene Sequence |
| Protein sequence |
