AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057009

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057009.t1 MTR_2g099870 93.312 613 37 4 1 611 1 611 0.0 1150
MS.gene057009.t1 MTR_8g104280 84.597 409 43 2 237 625 342 750 0.0 731
MS.gene057009.t1 MTR_8g104280 71.269 268 59 5 1 253 1 265 3.91e-99 319
MS.gene057009.t1 MTR_1g100210 35.526 228 126 8 372 578 671 898 9.47e-34 138
MS.gene057009.t1 MTR_4g025460 54.867 113 36 3 503 615 38 135 1.76e-21 92.8
MS.gene057009.t1 MTR_4g025470 56.627 83 35 1 114 196 1520 1601 7.60e-17 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057009.t1 AT4G10760 74.339 378 91 2 229 606 308 679 0.0 590
MS.gene057009.t1 AT4G10760 48.899 227 91 5 1 208 1 221 5.40e-52 190
MS.gene057009.t1 AT4G09980 35.885 209 99 10 385 565 617 818 3.06e-29 124
MS.gene057009.t1 AT4G09980 35.404 161 71 9 385 519 617 770 7.25e-18 88.2

Find 151 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAGCTTGCTGGAGATTC+AGG 0.173970 2.1:-4780579 MS.gene057009:CDS
TGCAACCGATAGTATGAATT+TGG 0.207772 2.1:-4780331 MS.gene057009:CDS
TTCCACTTTATCTAGGAAAT+TGG 0.217318 2.1:-4780643 MS.gene057009:CDS
TAATTAATAAGAAATCATTT+AGG 0.231898 2.1:-4780293 MS.gene057009:CDS
CGCTGCTGCCTTAGTGGTTT+GGG 0.233678 2.1:+4779928 None:intergenic
CTGGCTTTCGGCTTGTTTCC+CGG 0.250664 2.1:+4779464 None:intergenic
CAACTCCACCTTTCTTGTTC+CGG 0.271026 2.1:+4779408 None:intergenic
TGGAGAGATGATTTCGATTT+GGG 0.273839 2.1:+4780822 None:intergenic
TTGGAGAGATGATTTCGATT+TGG 0.288507 2.1:+4780821 None:intergenic
AACTCCACCTTTCTTGTTCC+GGG 0.291160 2.1:+4779409 None:intergenic
AGGACTGAGAGCAAGGTTTA+AGG 0.294608 2.1:-4779308 MS.gene057009:CDS
CGATTTGGGAGGGTTGAAAT+AGG 0.298630 2.1:+4780836 None:intergenic
TGCAGCCAGCATCACCTTCC+AGG 0.298893 2.1:-4779264 MS.gene057009:CDS
ACATTGTCTTGTTGGGATAA+AGG 0.301011 2.1:-4779539 MS.gene057009:CDS
TCTTCATACTGACATTAGTT+TGG 0.301506 2.1:-4780064 MS.gene057009:CDS
TTATTCAGACTCCAAGTATA+AGG 0.302457 2.1:-4780230 MS.gene057009:CDS
AATTAATAAGAAATCATTTA+GGG 0.304246 2.1:-4780292 MS.gene057009:CDS
ATGGACATATTAGGTAAGTT+TGG 0.307068 2.1:-4779835 MS.gene057009:CDS
TCAATGTTTCTGTTTACTTC+AGG 0.308190 2.1:+4779511 None:intergenic
TTGATTCTTCCACTTTATCT+AGG 0.314013 2.1:-4780650 MS.gene057009:CDS
ACGCTGCTGCCTTAGTGGTT+TGG 0.325085 2.1:+4779927 None:intergenic
TCGAGAGAAGAAACAAAATT+AGG 0.331810 2.1:+4780921 None:intergenic
AACTTTAGAATGGACATATT+AGG 0.337914 2.1:-4779844 MS.gene057009:CDS
GGACTAACTTTCTCTGATAC+TGG 0.341985 2.1:+4780735 None:intergenic
AGTTGATGTTGTGCAGTTTC+AGG 0.342869 2.1:+4780414 None:intergenic
ATCATTGTTGGAGGCAAATC+AGG 0.343274 2.1:+4779967 None:intergenic
CTTCATACTGACATTAGTTT+GGG 0.344638 2.1:-4780063 MS.gene057009:CDS
AAGCTTATTACATGCTATAA+AGG 0.346913 2.1:+4780107 None:intergenic
GGAGGGTTGAAATAGGTTAG+AGG 0.347303 2.1:+4780843 None:intergenic
CATTGTCTTGTTGGGATAAA+GGG 0.350805 2.1:-4779538 MS.gene057009:CDS
AGGTAAGTTTGGAGTAATAA+TGG 0.355596 2.1:-4779824 MS.gene057009:CDS
TTTGTTGGTAAGTCACAATA+TGG 0.356763 2.1:+4780156 None:intergenic
ATGTTATTGTTTCTGAAGTC+CGG 0.366102 2.1:-4779483 MS.gene057009:CDS
GCTGGCTGCACCTCCACATC+TGG 0.374605 2.1:+4779277 None:intergenic
ATTCACATGGAGCTGCCTTA+TGG 0.374787 2.1:-4779784 MS.gene057009:CDS
CATACATCTCATCTGGCTTT+CGG 0.378981 2.1:+4779452 None:intergenic
TGTTCATATGTGACTTGTGC+TGG 0.380903 2.1:+4780970 None:intergenic
TGCCTTAGTGGTTTGGGAGG+AGG 0.388533 2.1:+4779934 None:intergenic
TCAGCACGCTGCTGCCTTAG+TGG 0.392884 2.1:+4779922 None:intergenic
ACGAGAATGCTTAGAACGTT+GGG 0.403991 2.1:-4779662 MS.gene057009:CDS
GCCGCATTTCAAGAGCTTGC+TGG 0.406908 2.1:-4780588 MS.gene057009:CDS
ACTGGGCGTGCGATGGAACT+TGG 0.415975 2.1:-4779685 MS.gene057009:CDS
AGAGAAAGTTAGTCCTTTGT+CGG 0.420263 2.1:-4780727 MS.gene057009:CDS
CTCCAATTTCCTAGATAAAG+TGG 0.425057 2.1:+4780641 None:intergenic
AGATGAGATGTATGCTTTGT+TGG 0.426898 2.1:-4779443 MS.gene057009:CDS
ACCTTCCAGGGCTTCTGCTA+TGG 0.432012 2.1:-4779251 MS.gene057009:CDS
AAGAGAGAACTTTGAGAGAA+AGG 0.436417 2.1:+4780898 None:intergenic
CTTCAGCGAATAATTAGAAC+TGG 0.443807 2.1:-4779595 MS.gene057009:CDS
GCAAGGAACATTGTCTTGTT+GGG 0.448473 2.1:-4779546 MS.gene057009:CDS
AGCAAGGAACATTGTCTTGT+TGG 0.450367 2.1:-4779547 MS.gene057009:CDS
GAAGCCCTGGAAGGTGATGC+TGG 0.450433 2.1:+4779259 None:intergenic
CGCATGCACAATACTCATGC+AGG 0.450816 2.1:-4779379 MS.gene057009:CDS
TGATATTCGCAACTTTAGAA+TGG 0.456400 2.1:-4779854 MS.gene057009:CDS
TCATCTGCCATTGTTCCATA+AGG 0.458815 2.1:+4779769 None:intergenic
GTAATCAATTGAGTGGTGTA+AGG 0.460248 2.1:-4779342 MS.gene057009:CDS
TTGGAAGAGTTTGCTGTAAG+TGG 0.460670 2.1:-4780492 MS.gene057009:CDS
TGATAATGGTGCTGTCGAAT+TGG 0.462983 2.1:-4780511 MS.gene057009:CDS
ATGGTAATATGAATCAAAAT+CGG 0.465303 2.1:-4780362 MS.gene057009:CDS
AACAAAGCATACATCTCATC+TGG 0.470575 2.1:+4779445 None:intergenic
CTTAGTGGTTTGGGAGGAGG+AGG 0.471885 2.1:+4779937 None:intergenic
AATGTGTTGAGGAGATCATT+TGG 0.474261 2.1:-4779633 MS.gene057009:CDS
TATTCAGACTCCAAGTATAA+GGG 0.476845 2.1:-4780229 MS.gene057009:CDS
ATGTGTTGAGGAGATCATTT+GGG 0.482047 2.1:-4779632 MS.gene057009:CDS
GAAGAATCAATTTCCACAAA+AGG 0.485391 2.1:+4780663 None:intergenic
GTCGCTGCTCTACAAACTCA+TGG 0.485915 2.1:-4779727 MS.gene057009:CDS
GGAGGAGCACACATCATTGT+TGG 0.486546 2.1:+4779955 None:intergenic
TGAAATGCGGCTTTGTCTTG+TGG 0.495338 2.1:+4780600 None:intergenic
TGCCGGCAAGTACGAAGAAA+AGG 0.495538 2.1:+4780033 None:intergenic
GCTGCTAAGTTCAAAACTAA+AGG 0.497853 2.1:-4780195 MS.gene057009:CDS
ATTGAGTGGTGTAAGGTTAG+TGG 0.499280 2.1:-4779335 MS.gene057009:CDS
CGAGATAGCTTTGAGGTCAA+TGG 0.501626 2.1:-4780538 MS.gene057009:CDS
CATGCAGGGTGGATGTCTCT+TGG 0.503152 2.1:-4779364 MS.gene057009:CDS
GAACTGGACGTACGGGCCAT+TGG 0.503546 2.1:-4779579 MS.gene057009:CDS
AGGGTTGAAATAGGTTAGAG+GGG 0.504459 2.1:+4780845 None:intergenic
GAAGATTGTCGACGCCGGAC+TGG 0.504746 2.1:-4780132 MS.gene057009:CDS
GTTCATATGTGACTTGTGCT+GGG 0.505414 2.1:+4780971 None:intergenic
ACAGCAGCCTCCCTTATACT+TGG 0.506226 2.1:+4780219 None:intergenic
CCTTGCTGTGATTGAGCCAA+TGG 0.508971 2.1:+4779563 None:intergenic
TTAGTTAGTGTCCACATCAA+TGG 0.509598 2.1:+4779168 None:intergenic
CAGGCAATTCTCTCAATAGA+CGG 0.510857 2.1:+4780433 None:intergenic
TTTGTCGGTTGTTCAATCGA+TGG 0.512211 2.1:-4780712 MS.gene057009:CDS
ATGGGTCACTGGGCGTGCGA+TGG 0.514947 2.1:-4779692 MS.gene057009:CDS
AGGTCAATGGCAGATGATAA+TGG 0.515834 2.1:-4780525 MS.gene057009:CDS
TTGCAGTCGAGATAGCTTTG+AGG 0.526784 2.1:-4780545 MS.gene057009:CDS
GAGATGATTTCGATTTGGGA+GGG 0.527822 2.1:+4780826 None:intergenic
ATTTGTAGTGACAACAAAAG+AGG 0.528653 2.1:+4780758 None:intergenic
GACGAGAATGCTTAGAACGT+TGG 0.531111 2.1:-4779663 MS.gene057009:CDS
GGCTTTGTCTTGTGGTGTAA+AGG 0.531124 2.1:+4780608 None:intergenic
TATTGTTCTGAAGTGGAACT+AGG 0.531691 2.1:-4779898 MS.gene057009:CDS
TGTTATTGTTTCTGAAGTCC+GGG 0.532244 2.1:-4779482 MS.gene057009:CDS
ATTTACATGTGTTCATGTGC+CGG 0.533106 2.1:+4780016 None:intergenic
CTCCTCCTCCCAAACCACTA+AGG 0.533869 2.1:-4779936 MS.gene057009:CDS
TACCTCCATAGCAGAAGCCC+TGG 0.536388 2.1:+4779246 None:intergenic
AGGCAATTCTCTCAATAGAC+GGG 0.537064 2.1:+4780434 None:intergenic
AATAATTAGAACTGGACGTA+CGG 0.539894 2.1:-4779587 MS.gene057009:CDS
GTTGGAGGCAAATCAGGTGT+AGG 0.545838 2.1:+4779973 None:intergenic
AAGTGGCAAATCAAGAATCA+TGG 0.546831 2.1:-4780475 MS.gene057009:CDS
TTCCAGGGCTTCTGCTATGG+AGG 0.547985 2.1:-4779248 MS.gene057009:CDS
GGTGTAAGGTTAGTGGATGA+AGG 0.549511 2.1:-4779328 MS.gene057009:CDS
ATGTAAATATGTTCACTATG+AGG 0.549551 2.1:-4780001 MS.gene057009:CDS
GATAAGTCCCGGAACAAGAA+AGG 0.550130 2.1:-4779416 MS.gene057009:CDS
TTCATCATCATCAATGGAGA+TGG 0.550701 2.1:-4781036 None:intergenic
ATCCTCCAAATTCATACTAT+CGG 0.550759 2.1:+4780326 None:intergenic
ATAATTAGAACTGGACGTAC+GGG 0.552693 2.1:-4779586 MS.gene057009:CDS
GCAGCCAGCATCACCTTCCA+GGG 0.553453 2.1:-4779263 MS.gene057009:CDS
CTAGTGTTGCTGCTCAAACA+AGG 0.557349 2.1:-4779219 MS.gene057009:CDS
AACCGATAGTATGAATTTGG+AGG 0.560456 2.1:-4780328 MS.gene057009:CDS
AGAATCAATGGCCATTGATG+TGG 0.562896 2.1:-4779179 MS.gene057009:CDS
GGGTTGAAATAGGTTAGAGG+GGG 0.564873 2.1:+4780846 None:intergenic
AGAGATGATTTCGATTTGGG+AGG 0.566839 2.1:+4780825 None:intergenic
TTGGAGGCAAATCAGGTGTA+GGG 0.575681 2.1:+4779974 None:intergenic
TGCTGAGTATTGTTCTGAAG+TGG 0.577108 2.1:-4779905 MS.gene057009:CDS
ATGGAGATGGAGACAGATGA+AGG 0.579020 2.1:-4781023 MS.gene057009:CDS
AGATGTATGCTTTGTTGGAG+AGG 0.584633 2.1:-4779438 MS.gene057009:CDS
TGGATGAAGGACTGAGAGCA+AGG 0.584679 2.1:-4779315 MS.gene057009:CDS
GCTAAGTTCAAAACTAAAGG+TGG 0.585659 2.1:-4780192 MS.gene057009:CDS
GAGGGTTGAAATAGGTTAGA+GGG 0.586233 2.1:+4780844 None:intergenic
AGCTCCATGTGAATGTCCCA+CGG 0.591825 2.1:+4779793 None:intergenic
ATCGATTGAACAACCGACAA+AGG 0.594025 2.1:+4780714 None:intergenic
CAGCAGCATGAATTGAGTCT+CGG 0.594161 2.1:-4780387 MS.gene057009:CDS
ATGCTATAAAGGAACCAGTC+CGG 0.595501 2.1:+4780118 None:intergenic
GCTATCTCGACTGCAAGCGT+TGG 0.599582 2.1:+4780552 None:intergenic
GGAGCACACATCATTGTTGG+AGG 0.602292 2.1:+4779958 None:intergenic
TGCTGCCTTAGTGGTTTGGG+AGG 0.608733 2.1:+4779931 None:intergenic
CATGAATTGAGTCTCGGAGA+TGG 0.610889 2.1:-4780381 MS.gene057009:CDS
TCGCTGCTCTACAAACTCAT+GGG 0.610983 2.1:-4779726 MS.gene057009:CDS
CTAAAGGTGGTTCTCAGATG+AGG 0.614681 2.1:-4780179 MS.gene057009:CDS
TCCAGCAAGCTCTTGAAATG+CGG 0.615211 2.1:+4780587 None:intergenic
TTGTTGGAGAGGATAAGTCC+CGG 0.623233 2.1:-4779427 MS.gene057009:CDS
TAAGGCAGCTTATCCAGATG+TGG 0.624770 2.1:-4779290 MS.gene057009:CDS
AATGGCCATTGATTCTGTGA+CGG 0.626987 2.1:+4779186 None:intergenic
TTGGGGATATAAATGTGTTG+AGG 0.628466 2.1:-4779644 MS.gene057009:CDS
TCCACCGTGGGACATTCACA+TGG 0.629581 2.1:-4779797 MS.gene057009:CDS
GGCAGCTTATCCAGATGTGG+AGG 0.633458 2.1:-4779287 MS.gene057009:CDS
GGAGCTGCCTTATGGAACAA+TGG 0.636211 2.1:-4779776 MS.gene057009:CDS
TCCATAGCAGAAGCCCTGGA+AGG 0.636883 2.1:+4779250 None:intergenic
ATATCACAGTTGATCCATTG+TGG 0.638457 2.1:+4779871 None:intergenic
GAGCTTGCTGGAGATTCAGG+AGG 0.643407 2.1:-4780576 MS.gene057009:CDS
TGGAACTAGGCGAACCACAA+TGG 0.651967 2.1:-4779885 MS.gene057009:CDS
CAAAAGAAGATTGTCGACGC+CGG 0.652896 2.1:-4780137 MS.gene057009:CDS
CGAGAATGCTTAGAACGTTG+GGG 0.654390 2.1:-4779661 MS.gene057009:CDS
TCTCTTGGTAATCAATTGAG+TGG 0.668916 2.1:-4779349 MS.gene057009:CDS
AATAATGGCTGATCCACCGT+GGG 0.670381 2.1:-4779809 MS.gene057009:CDS
AAGTCCCGGAACAAGAAAGG+TGG 0.671413 2.1:-4779413 MS.gene057009:CDS
AGCTTGCTGGAGATTCAGGA+GGG 0.676077 2.1:-4780575 MS.gene057009:CDS
GCATGCACAATACTCATGCA+GGG 0.676682 2.1:-4779378 MS.gene057009:CDS
TCAGACTCCAAGTATAAGGG+AGG 0.680031 2.1:-4780226 MS.gene057009:CDS
CCATTGGCTCAATCACAGCA+AGG 0.689265 2.1:-4779563 MS.gene057009:CDS
TAATAATGGCTGATCCACCG+TGG 0.701095 2.1:-4779810 MS.gene057009:CDS
TGCACAATACTCATGCAGGG+TGG 0.701355 2.1:-4779375 MS.gene057009:CDS
TCCATGTGAATGTCCCACGG+TGG 0.777302 2.1:+4779796 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATAAGAAATCATTTA+GGG - chr2.1:4779899-4779918 MS.gene057009:CDS 10.0%
!! TAATTAATAAGAAATCATTT+AGG - chr2.1:4779898-4779917 MS.gene057009:CDS 10.0%
!!! TTATTATTATAAGGTTTTTG+AGG + chr2.1:4779402-4779421 None:intergenic 15.0%
!! ATGGTAATATGAATCAAAAT+CGG - chr2.1:4779829-4779848 MS.gene057009:CDS 20.0%
!!! TCATGGTTTTGAATATAAAT+AGG - chr2.1:4779733-4779752 MS.gene057009:CDS 20.0%
!!! TTCGAGGTTTTATTATTATA+AGG + chr2.1:4779411-4779430 None:intergenic 20.0%
! AAGCTTATTACATGCTATAA+AGG + chr2.1:4780087-4780106 None:intergenic 25.0%
! ATGTAAATATGTTCACTATG+AGG - chr2.1:4780190-4780209 MS.gene057009:CDS 25.0%
!!! AACTTTAGAATGGACATATT+AGG - chr2.1:4780347-4780366 MS.gene057009:CDS 25.0%
!!! TCATGGGCTTATTTTTTTAT+GGG - chr2.1:4780481-4780500 MS.gene057009:CDS 25.0%
!!! TTATTTTTTTATGGGTCACT+GGG - chr2.1:4780489-4780508 MS.gene057009:CDS 25.0%
AATAATTAGAACTGGACGTA+CGG - chr2.1:4780604-4780623 MS.gene057009:CDS 30.0%
ATCCTCCAAATTCATACTAT+CGG + chr2.1:4779868-4779887 None:intergenic 30.0%
ATGGACATATTAGGTAAGTT+TGG - chr2.1:4780356-4780375 MS.gene057009:CDS 30.0%
ATTTGTAGTGACAACAAAAG+AGG + chr2.1:4779436-4779455 None:intergenic 30.0%
GAAGAATCAATTTCCACAAA+AGG + chr2.1:4779531-4779550 None:intergenic 30.0%
TATTCAGACTCCAAGTATAA+GGG - chr2.1:4779962-4779981 MS.gene057009:CDS 30.0%
TCGAGAGAAGAAACAAAATT+AGG + chr2.1:4779273-4779292 None:intergenic 30.0%
TCTTCATACTGACATTAGTT+TGG - chr2.1:4780127-4780146 MS.gene057009:CDS 30.0%
TTATTCAGACTCCAAGTATA+AGG - chr2.1:4779961-4779980 MS.gene057009:CDS 30.0%
TTCCACTTTATCTAGGAAAT+TGG - chr2.1:4779548-4779567 MS.gene057009:CDS 30.0%
TTGATTCTTCCACTTTATCT+AGG - chr2.1:4779541-4779560 MS.gene057009:CDS 30.0%
! AGGTAAGTTTGGAGTAATAA+TGG - chr2.1:4780367-4780386 MS.gene057009:CDS 30.0%
! CTTCATACTGACATTAGTTT+GGG - chr2.1:4780128-4780147 MS.gene057009:CDS 30.0%
! TCAATGTTTCTGTTTACTTC+AGG + chr2.1:4780683-4780702 None:intergenic 30.0%
! TGATATTCGCAACTTTAGAA+TGG - chr2.1:4780337-4780356 MS.gene057009:CDS 30.0%
! TTTGTTGGTAAGTCACAATA+TGG + chr2.1:4780038-4780057 None:intergenic 30.0%
!! ATGTTATTGTTTCTGAAGTC+CGG - chr2.1:4780708-4780727 MS.gene057009:CDS 30.0%
!!! CTCATGGGCTTATTTTTTTA+TGG - chr2.1:4780480-4780499 MS.gene057009:CDS 30.0%
!!! CTTATTTTTTTATGGGTCAC+TGG - chr2.1:4780488-4780507 MS.gene057009:CDS 30.0%
AACAAAGCATACATCTCATC+TGG + chr2.1:4780749-4780768 None:intergenic 35.0%
AACCGATAGTATGAATTTGG+AGG - chr2.1:4779863-4779882 MS.gene057009:CDS 35.0%
AAGTGGCAAATCAAGAATCA+TGG - chr2.1:4779716-4779735 MS.gene057009:CDS 35.0%
AATGTGTTGAGGAGATCATT+TGG - chr2.1:4780558-4780577 MS.gene057009:CDS 35.0%
AGAGAAAGTTAGTCCTTTGT+CGG - chr2.1:4779464-4779483 MS.gene057009:CDS 35.0%
AGATGAGATGTATGCTTTGT+TGG - chr2.1:4780748-4780767 MS.gene057009:CDS 35.0%
ATAATTAGAACTGGACGTAC+GGG - chr2.1:4780605-4780624 MS.gene057009:CDS 35.0%
ATATCACAGTTGATCCATTG+TGG + chr2.1:4780323-4780342 None:intergenic 35.0%
ATGTGTTGAGGAGATCATTT+GGG - chr2.1:4780559-4780578 MS.gene057009:CDS 35.0%
ATTTACATGTGTTCATGTGC+CGG + chr2.1:4780178-4780197 None:intergenic 35.0%
CTCCAATTTCCTAGATAAAG+TGG + chr2.1:4779553-4779572 None:intergenic 35.0%
CTTCAGCGAATAATTAGAAC+TGG - chr2.1:4780596-4780615 MS.gene057009:CDS 35.0%
GCAAAAATACGAAACTGCTA+AGG - chr2.1:4779926-4779945 MS.gene057009:CDS 35.0%
GCTAAGTTCAAAACTAAAGG+TGG - chr2.1:4779999-4780018 MS.gene057009:CDS 35.0%
GCTGCTAAGTTCAAAACTAA+AGG - chr2.1:4779996-4780015 MS.gene057009:CDS 35.0%
GTAATCAATTGAGTGGTGTA+AGG - chr2.1:4780849-4780868 MS.gene057009:CDS 35.0%
TGCAACCGATAGTATGAATT+TGG - chr2.1:4779860-4779879 MS.gene057009:CDS 35.0%
TGGAGAGATGATTTCGATTT+GGG + chr2.1:4779372-4779391 None:intergenic 35.0%
TTAGTTAGTGTCCACATCAA+TGG + chr2.1:4781026-4781045 None:intergenic 35.0%
TTGGAGAGATGATTTCGATT+TGG + chr2.1:4779373-4779392 None:intergenic 35.0%
TTGGGGATATAAATGTGTTG+AGG - chr2.1:4780547-4780566 MS.gene057009:CDS 35.0%
! AAGAGAGAACTTTGAGAGAA+AGG + chr2.1:4779296-4779315 None:intergenic 35.0%
! ACATTGTCTTGTTGGGATAA+AGG - chr2.1:4780652-4780671 MS.gene057009:CDS 35.0%
! ATTTTCCGTCACAGAATCAA+TGG - chr2.1:4781000-4781019 MS.gene057009:CDS 35.0%
! CATTGTCTTGTTGGGATAAA+GGG - chr2.1:4780653-4780672 MS.gene057009:CDS 35.0%
! TCTCTTGGTAATCAATTGAG+TGG - chr2.1:4780842-4780861 MS.gene057009:CDS 35.0%
! TTTAAGTCGACTACCTTTTG+TGG - chr2.1:4779515-4779534 MS.gene057009:CDS 35.0%
!! TATTGTTCTGAAGTGGAACT+AGG - chr2.1:4780293-4780312 MS.gene057009:CDS 35.0%
!! TGTTATTGTTTCTGAAGTCC+GGG - chr2.1:4780709-4780728 MS.gene057009:CDS 35.0%
!!! AAGGTTTTTGAGGTAGTTGT+TGG + chr2.1:4779392-4779411 None:intergenic 35.0%
ACGAGAATGCTTAGAACGTT+GGG - chr2.1:4780529-4780548 MS.gene057009:CDS 40.0%
AGAATCAATGGCCATTGATG+TGG - chr2.1:4781012-4781031 MS.gene057009:CDS 40.0%
AGCAAGGAACATTGTCTTGT+TGG - chr2.1:4780644-4780663 MS.gene057009:CDS 40.0%
AGGCAATTCTCTCAATAGAC+GGG + chr2.1:4779760-4779779 None:intergenic 40.0%
AGGGTTGAAATAGGTTAGAG+GGG + chr2.1:4779349-4779368 None:intergenic 40.0%
AGGTCAATGGCAGATGATAA+TGG - chr2.1:4779666-4779685 MS.gene057009:CDS 40.0%
ATCATTGTTGGAGGCAAATC+AGG + chr2.1:4780227-4780246 None:intergenic 40.0%
ATCGATTGAACAACCGACAA+AGG + chr2.1:4779480-4779499 None:intergenic 40.0%
ATGCTATAAAGGAACCAGTC+CGG + chr2.1:4780076-4780095 None:intergenic 40.0%
ATTGAGTGGTGTAAGGTTAG+TGG - chr2.1:4780856-4780875 MS.gene057009:CDS 40.0%
CAGGCAATTCTCTCAATAGA+CGG + chr2.1:4779761-4779780 None:intergenic 40.0%
GAGGGTTGAAATAGGTTAGA+GGG + chr2.1:4779350-4779369 None:intergenic 40.0%
GGACTAACTTTCTCTGATAC+TGG + chr2.1:4779459-4779478 None:intergenic 40.0%
TCATCTGCCATTGTTCCATA+AGG + chr2.1:4780425-4780444 None:intergenic 40.0%
! AGATGTATGCTTTGTTGGAG+AGG - chr2.1:4780753-4780772 MS.gene057009:CDS 40.0%
! AGTTGATGTTGTGCAGTTTC+AGG + chr2.1:4779780-4779799 None:intergenic 40.0%
! CGTCGACAATCTTCTTTTGT+TGG + chr2.1:4780053-4780072 None:intergenic 40.0%
! GACAACAAAAGAGGTTTTCG+AGG + chr2.1:4779427-4779446 None:intergenic 40.0%
! GCAAGGAACATTGTCTTGTT+GGG - chr2.1:4780645-4780664 MS.gene057009:CDS 40.0%
! GTTCATATGTGACTTGTGCT+GGG + chr2.1:4779223-4779242 None:intergenic 40.0%
! TGTTCATATGTGACTTGTGC+TGG + chr2.1:4779224-4779243 None:intergenic 40.0%
! TTTGTCGGTTGTTCAATCGA+TGG - chr2.1:4779479-4779498 MS.gene057009:CDS 40.0%
!! AATGGCCATTGATTCTGTGA+CGG + chr2.1:4781008-4781027 None:intergenic 40.0%
!! AGAGATGATTTCGATTTGGG+AGG + chr2.1:4779369-4779388 None:intergenic 40.0%
!! CATACATCTCATCTGGCTTT+CGG + chr2.1:4780742-4780761 None:intergenic 40.0%
!! GAGATGATTTCGATTTGGGA+GGG + chr2.1:4779368-4779387 None:intergenic 40.0%
!! TGATAATGGTGCTGTCGAAT+TGG - chr2.1:4779680-4779699 MS.gene057009:CDS 40.0%
!! TGCTGAGTATTGTTCTGAAG+TGG - chr2.1:4780286-4780305 MS.gene057009:CDS 40.0%
!! TTGGAAGAGTTTGCTGTAAG+TGG - chr2.1:4779699-4779718 MS.gene057009:CDS 40.0%
AACTCCACCTTTCTTGTTCC+GGG + chr2.1:4780785-4780804 None:intergenic 45.0%
AATAATGGCTGATCCACCGT+GGG - chr2.1:4780382-4780401 MS.gene057009:CDS 45.0%
AGGACTGAGAGCAAGGTTTA+AGG - chr2.1:4780883-4780902 MS.gene057009:CDS 45.0%
ATGGAGATGGAGACAGATGA+AGG - chr2.1:4779168-4779187 MS.gene057009:CDS 45.0%
ATTCACATGGAGCTGCCTTA+TGG - chr2.1:4780407-4780426 MS.gene057009:CDS 45.0%
CAAAAGAAGATTGTCGACGC+CGG - chr2.1:4780054-4780073 MS.gene057009:CDS 45.0%
CAACTCCACCTTTCTTGTTC+CGG + chr2.1:4780786-4780805 None:intergenic 45.0%
CAGCAGCATGAATTGAGTCT+CGG - chr2.1:4779804-4779823 MS.gene057009:CDS 45.0%
CATGAATTGAGTCTCGGAGA+TGG - chr2.1:4779810-4779829 MS.gene057009:CDS 45.0%
CGAGAATGCTTAGAACGTTG+GGG - chr2.1:4780530-4780549 MS.gene057009:CDS 45.0%
CTAAAGGTGGTTCTCAGATG+AGG - chr2.1:4780012-4780031 MS.gene057009:CDS 45.0%
GACGAGAATGCTTAGAACGT+TGG - chr2.1:4780528-4780547 MS.gene057009:CDS 45.0%
GATAAGTCCCGGAACAAGAA+AGG - chr2.1:4780775-4780794 MS.gene057009:CDS 45.0%
GCATGCACAATACTCATGCA+GGG - chr2.1:4780813-4780832 MS.gene057009:CDS 45.0%
GGAGGGTTGAAATAGGTTAG+AGG + chr2.1:4779351-4779370 None:intergenic 45.0%
GGGTTGAAATAGGTTAGAGG+GGG + chr2.1:4779348-4779367 None:intergenic 45.0%
GTGTAGGAGAAAAAGGACGA+TGG + chr2.1:4779326-4779345 None:intergenic 45.0%
TAAGGCAGCTTATCCAGATG+TGG - chr2.1:4780901-4780920 MS.gene057009:CDS 45.0%
TAATAATGGCTGATCCACCG+TGG - chr2.1:4780381-4780400 MS.gene057009:CDS 45.0%
TCAGACTCCAAGTATAAGGG+AGG - chr2.1:4779965-4779984 MS.gene057009:CDS 45.0%
TCCAGCAAGCTCTTGAAATG+CGG + chr2.1:4779607-4779626 None:intergenic 45.0%
TCGCTGCTCTACAAACTCAT+GGG - chr2.1:4780465-4780484 MS.gene057009:CDS 45.0%
TTGGAGGCAAATCAGGTGTA+GGG + chr2.1:4780220-4780239 None:intergenic 45.0%
TTGTTGGAGAGGATAAGTCC+CGG - chr2.1:4780764-4780783 MS.gene057009:CDS 45.0%
! AAATAGGTTAGAGGGGGTGT+AGG + chr2.1:4779342-4779361 None:intergenic 45.0%
! CGATTTGGGAGGGTTGAAAT+AGG + chr2.1:4779358-4779377 None:intergenic 45.0%
! CTAGTGTTGCTGCTCAAACA+AGG - chr2.1:4780972-4780991 MS.gene057009:CDS 45.0%
! GGCTTTGTCTTGTGGTGTAA+AGG + chr2.1:4779586-4779605 None:intergenic 45.0%
! GGTGTAAGGTTAGTGGATGA+AGG - chr2.1:4780863-4780882 MS.gene057009:CDS 45.0%
! GTCCTTTTCTTCGTACTTGC+CGG - chr2.1:4780156-4780175 MS.gene057009:CDS 45.0%
! TGAAATGCGGCTTTGTCTTG+TGG + chr2.1:4779594-4779613 None:intergenic 45.0%
! TTGCAGTCGAGATAGCTTTG+AGG - chr2.1:4779646-4779665 MS.gene057009:CDS 45.0%
!! CGAGATAGCTTTGAGGTCAA+TGG - chr2.1:4779653-4779672 MS.gene057009:CDS 45.0%
AAGTCCCGGAACAAGAAAGG+TGG - chr2.1:4780778-4780797 MS.gene057009:CDS 50.0%
ACAGCAGCCTCCCTTATACT+TGG + chr2.1:4779975-4779994 None:intergenic 50.0%
AGCTCCATGTGAATGTCCCA+CGG + chr2.1:4780401-4780420 None:intergenic 50.0%
CGCATGCACAATACTCATGC+AGG - chr2.1:4780812-4780831 MS.gene057009:CDS 50.0%
GGAGCACACATCATTGTTGG+AGG + chr2.1:4780236-4780255 None:intergenic 50.0%
GGAGCTGCCTTATGGAACAA+TGG - chr2.1:4780415-4780434 MS.gene057009:CDS 50.0%
GTCGCTGCTCTACAAACTCA+TGG - chr2.1:4780464-4780483 MS.gene057009:CDS 50.0%
GTTGGAGGCAAATCAGGTGT+AGG + chr2.1:4780221-4780240 None:intergenic 50.0%
TGCACAATACTCATGCAGGG+TGG - chr2.1:4780816-4780835 MS.gene057009:CDS 50.0%
TGCCGGCAAGTACGAAGAAA+AGG + chr2.1:4780161-4780180 None:intergenic 50.0%
TGGAACTAGGCGAACCACAA+TGG - chr2.1:4780306-4780325 MS.gene057009:CDS 50.0%
TGGATGAAGGACTGAGAGCA+AGG - chr2.1:4780876-4780895 MS.gene057009:CDS 50.0%
! AGAGGGGGTGTAGGAGAAAA+AGG + chr2.1:4779333-4779352 None:intergenic 50.0%
! CCTTGCTGTGATTGAGCCAA+TGG + chr2.1:4780631-4780650 None:intergenic 50.0%
! GGAGGAGCACACATCATTGT+TGG + chr2.1:4780239-4780258 None:intergenic 50.0%
!! AGCTTGCTGGAGATTCAGGA+GGG - chr2.1:4779616-4779635 MS.gene057009:CDS 50.0%
!! CAAGAGCTTGCTGGAGATTC+AGG - chr2.1:4779612-4779631 MS.gene057009:CDS 50.0%
!! CCATTGGCTCAATCACAGCA+AGG - chr2.1:4780628-4780647 MS.gene057009:CDS 50.0%
ACCTTCCAGGGCTTCTGCTA+TGG - chr2.1:4780940-4780959 MS.gene057009:CDS 55.0%
ACGCTGCTGCCTTAGTGGTT+TGG + chr2.1:4780267-4780286 None:intergenic 55.0%
CATGCAGGGTGGATGTCTCT+TGG - chr2.1:4780827-4780846 MS.gene057009:CDS 55.0%
CGCTGCTGCCTTAGTGGTTT+GGG + chr2.1:4780266-4780285 None:intergenic 55.0%
CTCCTCCTCCCAAACCACTA+AGG - chr2.1:4780255-4780274 MS.gene057009:CDS 55.0%
GCCGCATTTCAAGAGCTTGC+TGG - chr2.1:4779603-4779622 MS.gene057009:CDS 55.0%
GCTATCTCGACTGCAAGCGT+TGG + chr2.1:4779642-4779661 None:intergenic 55.0%
GGCAGCTTATCCAGATGTGG+AGG - chr2.1:4780904-4780923 MS.gene057009:CDS 55.0%
TACCTCCATAGCAGAAGCCC+TGG + chr2.1:4780948-4780967 None:intergenic 55.0%
TCCACCGTGGGACATTCACA+TGG - chr2.1:4780394-4780413 MS.gene057009:CDS 55.0%
TCCATAGCAGAAGCCCTGGA+AGG + chr2.1:4780944-4780963 None:intergenic 55.0%
TCCATGTGAATGTCCCACGG+TGG + chr2.1:4780398-4780417 None:intergenic 55.0%
TTCCAGGGCTTCTGCTATGG+AGG - chr2.1:4780943-4780962 MS.gene057009:CDS 55.0%
! CTGGCTTTCGGCTTGTTTCC+CGG + chr2.1:4780730-4780749 None:intergenic 55.0%
! CTTAGTGGTTTGGGAGGAGG+AGG + chr2.1:4780257-4780276 None:intergenic 55.0%
! TGCCTTAGTGGTTTGGGAGG+AGG + chr2.1:4780260-4780279 None:intergenic 55.0%
! TGCTGCCTTAGTGGTTTGGG+AGG + chr2.1:4780263-4780282 None:intergenic 55.0%
!! GAGCTTGCTGGAGATTCAGG+AGG - chr2.1:4779615-4779634 MS.gene057009:CDS 55.0%
ACTGGGCGTGCGATGGAACT+TGG - chr2.1:4780506-4780525 MS.gene057009:CDS 60.0%
GAACTGGACGTACGGGCCAT+TGG - chr2.1:4780612-4780631 MS.gene057009:CDS 60.0%
GAAGATTGTCGACGCCGGAC+TGG - chr2.1:4780059-4780078 MS.gene057009:CDS 60.0%
GAAGCCCTGGAAGGTGATGC+TGG + chr2.1:4780935-4780954 None:intergenic 60.0%
GCAGCCAGCATCACCTTCCA+GGG - chr2.1:4780928-4780947 MS.gene057009:CDS 60.0%
TCAGCACGCTGCTGCCTTAG+TGG + chr2.1:4780272-4780291 None:intergenic 60.0%
TGCAGCCAGCATCACCTTCC+AGG - chr2.1:4780927-4780946 MS.gene057009:CDS 60.0%
ATGGGTCACTGGGCGTGCGA+TGG - chr2.1:4780499-4780518 MS.gene057009:CDS 65.0%
GCTGGCTGCACCTCCACATC+TGG + chr2.1:4780917-4780936 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 4779168 4781045 4779168 ID=MS.gene057009
chr2.1 mRNA 4779168 4781045 4779168 ID=MS.gene057009.t1;Parent=MS.gene057009
chr2.1 exon 4779168 4781045 4779168 ID=MS.gene057009.t1.exon1;Parent=MS.gene057009.t1
chr2.1 CDS 4779168 4781045 4779168 ID=cds.MS.gene057009.t1;Parent=MS.gene057009.t1
Gene Sequence

>MS.gene057009

ATGGAGATGGAGACAGATGAAGGTATAAACAGTCTTAAAGCTCGCATAGAAACCCAGCACAAGTCACATATGAACATGCTTTCTACTGTACAATCTGTTATACCTAATTTTGTTTCTTCTCTCGACCTTTCTCTCAAAGTTCTCTCTTCTTTCAACCATCGTCCTTTTTCTCCTACACCCCCTCTAACCTATTTCAACCCTCCCAAATCGAAATCATCTCTCCAACAACTACCTCAAAAACCTTATAATAATAAAACCTCGAAAACCTCTTTTGTTGTCACTACAAATCCAGTATCAGAGAAAGTTAGTCCTTTGTCGGTTGTTCAATCGATGGTTGCTGTTTGTCTTTTAAGTCGACTACCTTTTGTGGAAATTGATTCTTCCACTTTATCTAGGAAATTGGAGAATGATCAAACCTTTACACCACAAGACAAAGCCGCATTTCAAGAGCTTGCTGGAGATTCAGGAGGGCCAACGCTTGCAGTCGAGATAGCTTTGAGGTCAATGGCAGATGATAATGGTGCTGTCGAATTGGAAGAGTTTGCTGTAAGTGGCAAATCAAGAATCATGGTTTTGAATATAAATAGGACCCGTCTATTGAGAGAATTGCCTGAAACTGCACAACATCAACTGCAGCAGCAGCATGAATTGAGTCTCGGAGATGGTAATATGAATCAAAATCGGCAACAAATTGCAACCGATAGTATGAATTTGGAGGATGTTGATGCTTTAATTAATAAGAAATCATTTAGGGAGCTGCAAAAATACGAAACTGCTAAGGAGCTTTTAAAAATTATTCAGACTCCAAGTATAAGGGAGGCTGCTGTAGCTGCTAAGTTCAAAACTAAAGGTGGTTCTCAGATGAGGCCATATTGTGACTTACCAACAAAAGAAGATTGTCGACGCCGGACTGGTTCCTTTATAGCATGTAATAAGCTTCATTTTAGACGAATCATTGCTCTTCATACTGACATTAGTTTGGGAGACTGTCCTTTTCTTCGTACTTGCCGGCACATGAACACATGTAAATATGTTCACTATGAGGATGACCCTACACCTGATTTGCCTCCAACAATGATGTGTGCTCCTCCTCCTCCCAAACCACTAAGGCAGCAGCGTGCTGAGTATTGTTCTGAAGTGGAACTAGGCGAACCACAATGGATCAACTGTGATATTCGCAACTTTAGAATGGACATATTAGGTAAGTTTGGAGTAATAATGGCTGATCCACCGTGGGACATTCACATGGAGCTGCCTTATGGAACAATGGCAGATGATGAAATGCGCACTCTTAATGTCGCTGCTCTACAAACTCATGGGCTTATTTTTTTATGGGTCACTGGGCGTGCGATGGAACTTGGACGAGAATGCTTAGAACGTTGGGGATATAAATGTGTTGAGGAGATCATTTGGGTGAAAACAAATCAACTTCAGCGAATAATTAGAACTGGACGTACGGGCCATTGGCTCAATCACAGCAAGGAACATTGTCTTGTTGGGATAAAGGGTAGTCCTGAAGTAAACAGAAACATTGACACTGATGTTATTGTTTCTGAAGTCCGGGAAACAAGCCGAAAGCCAGATGAGATGTATGCTTTGTTGGAGAGGATAAGTCCCGGAACAAGAAAGGTGGAGTTGTTTGCTCGCATGCACAATACTCATGCAGGGTGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTAGTGGATGAAGGACTGAGAGCAAGGTTTAAGGCAGCTTATCCAGATGTGGAGGTGCAGCCAGCATCACCTTCCAGGGCTTCTGCTATGGAGGTAGACTCTAGTGTTGCTGCTCAAACAAGGAGTTCATTTTCCGTCACAGAATCAATGGCCATTGATGTGGACACTAACTAA
Protein sequence

>MS.gene057009.t1

MEMETDEGINSLKARIETQHKSHMNMLSTVQSVIPNFVSSLDLSLKVLSSFNHRPFSPTPPLTYFNPPKSKSSLQQLPQKPYNNKTSKTSFVVTTNPVSEKVSPLSVVQSMVAVCLLSRLPFVEIDSSTLSRKLENDQTFTPQDKAAFQELAGDSGGPTLAVEIALRSMADDNGAVELEEFAVSGKSRIMVLNINRTRLLRELPETAQHQLQQQHELSLGDGNMNQNRQQIATDSMNLEDVDALINKKSFRELQKYETAKELLKIIQTPSIREAAVAAKFKTKGGSQMRPYCDLPTKEDCRRRTGSFIACNKLHFRRIIALHTDISLGDCPFLRTCRHMNTCKYVHYEDDPTPDLPPTMMCAPPPPKPLRQQRAEYCSEVELGEPQWINCDIRNFRMDILGKFGVIMADPPWDIHMELPYGTMADDEMRTLNVAALQTHGLIFLWVTGRAMELGRECLERWGYKCVEEIIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKGSPEVNRNIDTDVIVSEVRETSRKPDEMYALLERISPGTRKVELFARMHNTHAGWMSLGNQLSGVRLVDEGLRARFKAAYPDVEVQPASPSRASAMEVDSSVAAQTRSSFSVTESMAIDVDTN