Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057745.t1 | XP_003607405.2 | 56 | 536 | 121 | 9 | 579 | 1114 | 657 | 1077 | 1.90E-133 | 487.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057745.t1 | Q9SMV6 | 46.4 | 558 | 181 | 8 | 560 | 1114 | 633 | 1075 | 1.9e-108 | 395.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057745.t1 | G7JRR9 | 56.0 | 536 | 121 | 9 | 579 | 1114 | 657 | 1077 | 1.4e-133 | 487.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057745 | MS.gene057757 | 0.848134 | 7.44E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057745.t1 | MTR_4g077660 | 92.126 | 254 | 8 | 1 | 861 | 1114 | 836 | 1077 | 3.14e-149 | 474 |
| MS.gene057745.t1 | MTR_4g077660 | 91.121 | 214 | 7 | 1 | 619 | 832 | 836 | 1037 | 1.12e-119 | 395 |
| MS.gene057745.t1 | MTR_4g077660 | 89.441 | 161 | 5 | 1 | 430 | 590 | 889 | 1037 | 8.91e-82 | 290 |
| MS.gene057745.t1 | MTR_4g077660 | 76.087 | 46 | 11 | 0 | 821 | 866 | 657 | 702 | 2.98e-12 | 71.6 |
| MS.gene057745.t1 | MTR_4g077660 | 80.952 | 42 | 8 | 0 | 579 | 620 | 657 | 698 | 3.08e-12 | 71.6 |
| MS.gene057745.t1 | MTR_5g007790 | 84.646 | 254 | 27 | 1 | 861 | 1114 | 837 | 1078 | 2.21e-128 | 419 |
| MS.gene057745.t1 | MTR_5g007790 | 82.710 | 214 | 25 | 1 | 619 | 832 | 837 | 1038 | 1.34e-99 | 340 |
| MS.gene057745.t1 | MTR_5g007790 | 79.503 | 161 | 21 | 1 | 430 | 590 | 890 | 1038 | 3.20e-64 | 238 |
| MS.gene057745.t1 | MTR_8g013700 | 66.827 | 208 | 57 | 1 | 619 | 826 | 736 | 931 | 1.36e-77 | 275 |
| MS.gene057745.t1 | MTR_8g013700 | 66.827 | 208 | 57 | 1 | 861 | 1068 | 736 | 931 | 2.09e-77 | 275 |
| MS.gene057745.t1 | MTR_8g013700 | 63.871 | 155 | 44 | 1 | 430 | 584 | 789 | 931 | 2.23e-50 | 194 |
| MS.gene057745.t1 | MTR_8g079465 | 88.889 | 117 | 10 | 2 | 316 | 431 | 444 | 558 | 2.12e-56 | 209 |
| MS.gene057745.t1 | MTR_8g079465 | 63.934 | 183 | 45 | 4 | 316 | 479 | 645 | 825 | 1.44e-55 | 210 |
| MS.gene057745.t1 | MTR_8g079465 | 63.934 | 183 | 45 | 4 | 316 | 479 | 627 | 807 | 1.51e-55 | 209 |
| MS.gene057745.t1 | MTR_8g079465 | 63.934 | 183 | 45 | 4 | 316 | 479 | 656 | 836 | 1.53e-55 | 210 |
| MS.gene057745.t1 | MTR_4g039930 | 62.791 | 129 | 47 | 1 | 140 | 268 | 1 | 128 | 5.51e-45 | 160 |
| MS.gene057745.t1 | MTR_1g058610 | 30.769 | 273 | 160 | 7 | 8 | 267 | 8 | 264 | 1.69e-29 | 126 |
| MS.gene057745.t1 | MTR_0340s0030 | 26.374 | 273 | 168 | 6 | 24 | 279 | 20 | 276 | 4.12e-24 | 103 |
| MS.gene057745.t1 | MTR_2g064880 | 50.893 | 112 | 53 | 1 | 320 | 431 | 630 | 739 | 2.33e-21 | 101 |
| MS.gene057745.t1 | MTR_7g088035 | 33.775 | 151 | 89 | 4 | 16 | 161 | 17 | 161 | 2.07e-15 | 79.0 |
| MS.gene057745.t1 | MTR_2g063570 | 30.270 | 185 | 99 | 8 | 19 | 190 | 16 | 183 | 3.08e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057745.t1 | AT5G17020 | 79.134 | 254 | 41 | 1 | 861 | 1114 | 819 | 1060 | 1.13e-124 | 409 |
| MS.gene057745.t1 | AT5G17020 | 76.636 | 214 | 38 | 1 | 619 | 832 | 819 | 1020 | 2.95e-97 | 333 |
| MS.gene057745.t1 | AT5G17020 | 72.671 | 161 | 32 | 1 | 430 | 590 | 872 | 1020 | 4.90e-65 | 240 |
| MS.gene057745.t1 | AT5G17020 | 79.134 | 254 | 41 | 1 | 861 | 1114 | 834 | 1075 | 1.96e-124 | 408 |
| MS.gene057745.t1 | AT5G17020 | 76.636 | 214 | 38 | 1 | 619 | 832 | 834 | 1035 | 4.97e-97 | 333 |
| MS.gene057745.t1 | AT5G17020 | 72.671 | 161 | 32 | 1 | 430 | 590 | 887 | 1035 | 6.45e-65 | 239 |
| MS.gene057745.t1 | AT3G03110 | 75.591 | 254 | 50 | 1 | 861 | 1114 | 835 | 1076 | 4.90e-118 | 391 |
| MS.gene057745.t1 | AT3G03110 | 73.832 | 214 | 44 | 1 | 619 | 832 | 835 | 1036 | 1.00e-92 | 321 |
| MS.gene057745.t1 | AT3G03110 | 70.186 | 161 | 36 | 1 | 430 | 590 | 888 | 1036 | 4.86e-62 | 231 |
| MS.gene057745.t1 | AT1G17210 | 60.377 | 106 | 41 | 1 | 327 | 431 | 664 | 769 | 2.88e-21 | 100 |
| MS.gene057745.t1 | AT1G79320 | 36.774 | 155 | 89 | 3 | 24 | 174 | 19 | 168 | 1.66e-16 | 83.2 |
| MS.gene057745.t1 | AT1G79310 | 34.911 | 169 | 97 | 5 | 13 | 177 | 10 | 169 | 3.90e-16 | 82.4 |
| MS.gene057745.t1 | AT1G79340 | 35.673 | 171 | 94 | 7 | 1 | 166 | 1 | 160 | 5.99e-16 | 82.0 |
| MS.gene057745.t1 | AT1G79330 | 35.758 | 165 | 92 | 7 | 19 | 175 | 13 | 171 | 2.63e-15 | 80.1 |
Find 248 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATAGTCCATTAACAAAT+TGG | 0.194943 | 4.4:-36154286 | None:intergenic |
| CAAATAGTCCATTAACAAAT+TGG | 0.194943 | 4.4:-36156436 | None:intergenic |
| CAAATAGTCCATTAACAAAT+TGG | 0.194943 | 4.4:-36158586 | None:intergenic |
| GAGCCGTCCGGAAGAGAATT+AGG | 0.210750 | 4.4:+36152847 | MS.gene057745:CDS |
| GACGGTCATATCAGCAATTT+TGG | 0.224903 | 4.4:+36152985 | MS.gene057745:CDS |
| CAAGAAAGAGCACAAATAAT+TGG | 0.237953 | 4.4:+36154034 | MS.gene057745:CDS |
| CAAGAAAGAGCACAAATAAT+TGG | 0.237953 | 4.4:+36156184 | MS.gene057745:CDS |
| CAAGAAAGAGCACAAATAAT+TGG | 0.237953 | 4.4:+36158334 | MS.gene057745:CDS |
| AAGTAAAACATGACAGATTA+TGG | 0.264759 | 4.4:+36152178 | None:intergenic |
| GTATCAGGAAATCTCGTATA+TGG | 0.269276 | 4.4:-36154340 | None:intergenic |
| GTATCAGGAAATCTCGTATA+TGG | 0.269276 | 4.4:-36156490 | None:intergenic |
| GTATCAGGAAATCTCGTATA+TGG | 0.269276 | 4.4:-36158640 | None:intergenic |
| CAGGTTACCCAATTTGTTAA+TGG | 0.289036 | 4.4:+36154278 | MS.gene057745:intron |
| CAGGTTACCCAATTTGTTAA+TGG | 0.289036 | 4.4:+36156428 | MS.gene057745:intron |
| CAGGTTACCCAATTTGTTAA+TGG | 0.289036 | 4.4:+36158578 | MS.gene057745:intron |
| ACCGGTCTGTCCCTGATTTC+CGG | 0.290858 | 4.4:-36153448 | None:intergenic |
| GATTCCGCGACCGAATTATA+TGG | 0.294920 | 4.4:+36152730 | MS.gene057745:CDS |
| ATCACCCCTCTTGGATCTTC+CGG | 0.312734 | 4.4:+36152825 | MS.gene057745:CDS |
| CAAAGAATGCTTTCTATTCC+AGG | 0.320623 | 4.4:+36159083 | MS.gene057745:CDS |
| CACAAAATTTGAACGACATA+AGG | 0.326733 | 4.4:-36152373 | None:intergenic |
| AGTAGAAGATGCCGGAAATC+AGG | 0.335642 | 4.4:+36153437 | MS.gene057745:CDS |
| GGAGATGCTGAAGAAGTTTC+AGG | 0.344422 | 4.4:+36153608 | MS.gene057745:CDS |
| GGAGATGCTGAAGAAGTTTC+AGG | 0.344422 | 4.4:+36155758 | MS.gene057745:CDS |
| GGAGATGCTGAAGAAGTTTC+AGG | 0.344422 | 4.4:+36157908 | MS.gene057745:CDS |
| CACCGTCTACTGAGGTTCTT+AGG | 0.355641 | 4.4:+36152239 | MS.gene057745:CDS |
| GATTTCCGGCATCTTCTACT+TGG | 0.356811 | 4.4:-36153434 | None:intergenic |
| CTTCAGATGCCGGGGCTATA+CGG | 0.357772 | 4.4:+36153057 | MS.gene057745:CDS |
| GTGTGCTAACTGAGCCCCTT+TGG | 0.363467 | 4.4:+36154080 | MS.gene057745:CDS |
| GTGTGCTAACTGAGCCCCTT+TGG | 0.363467 | 4.4:+36156230 | MS.gene057745:CDS |
| GTGTGCTAACTGAGCCCCTT+TGG | 0.363467 | 4.4:+36158380 | MS.gene057745:CDS |
| CATCGAACTAAGAGTATAAC+TGG | 0.363938 | 4.4:+36152760 | MS.gene057745:CDS |
| TTGACCTTTCAGCTGGAAAC+TGG | 0.366423 | 4.4:+36154058 | MS.gene057745:CDS |
| TTGACCTTTCAGCTGGAAAC+TGG | 0.366423 | 4.4:+36156208 | MS.gene057745:CDS |
| TTGACCTTTCAGCTGGAAAC+TGG | 0.366423 | 4.4:+36158358 | MS.gene057745:CDS |
| GACTGTGCTTAATATATTGC+AGG | 0.367551 | 4.4:+36154758 | MS.gene057745:CDS |
| GACTGTGCTTAATATATTGC+AGG | 0.367551 | 4.4:+36156908 | MS.gene057745:CDS |
| ATCAGTGACAATTGTTGTTC+TGG | 0.369051 | 4.4:+36152697 | MS.gene057745:CDS |
| TCAGCAATTGAAGCTTGTTA+TGG | 0.371534 | 4.4:+36155668 | MS.gene057745:intron |
| TCAGCAATTGAAGCTTGTTA+TGG | 0.371534 | 4.4:+36157818 | MS.gene057745:intron |
| ATTCAATCATGTGGGCATTT+CGG | 0.372536 | 4.4:+36155691 | MS.gene057745:CDS |
| ATTCAATCATGTGGGCATTT+CGG | 0.372536 | 4.4:+36157841 | MS.gene057745:CDS |
| CAGAAATGGATGGAAATTAT+AGG | 0.375812 | 4.4:+36154687 | MS.gene057745:intron |
| CAGAAATGGATGGAAATTAT+AGG | 0.375812 | 4.4:+36156837 | MS.gene057745:intron |
| CTGTCAGAGTCTTATGGACT+TGG | 0.375854 | 4.4:+36152951 | MS.gene057745:CDS |
| CGTATCCTCCCCAAGTTATC+TGG | 0.377538 | 4.4:-36152897 | None:intergenic |
| ACCTCAGCTGTTGTCATGTT+CGG | 0.382138 | 4.4:-36154187 | None:intergenic |
| ACCTCAGCTGTTGTCATGTT+CGG | 0.382138 | 4.4:-36156337 | None:intergenic |
| ACCTCAGCTGTTGTCATGTT+CGG | 0.382138 | 4.4:-36158487 | None:intergenic |
| GTCAATCTCACCAGATAACT+TGG | 0.393313 | 4.4:+36152887 | MS.gene057745:CDS |
| GAAAGGAATATTGCTGAAAC+AGG | 0.395957 | 4.4:+36153570 | MS.gene057745:CDS |
| GAAAGGAATATTGCTGAAAC+AGG | 0.395957 | 4.4:+36155720 | MS.gene057745:CDS |
| GAAAGGAATATTGCTGAAAC+AGG | 0.395957 | 4.4:+36157870 | MS.gene057745:CDS |
| TGTTGGTCCAAGCAATTCAT+TGG | 0.396680 | 4.4:+36153164 | MS.gene057745:CDS |
| ACAGTTCTGTCAGAGTCTTA+TGG | 0.400078 | 4.4:+36152945 | MS.gene057745:CDS |
| TGTGCTAACTGAGCCCCTTT+GGG | 0.407002 | 4.4:+36154081 | MS.gene057745:CDS |
| TGTGCTAACTGAGCCCCTTT+GGG | 0.407002 | 4.4:+36156231 | MS.gene057745:CDS |
| TGTGCTAACTGAGCCCCTTT+GGG | 0.407002 | 4.4:+36158381 | MS.gene057745:CDS |
| GCATATCCCTAATTCTCTTC+CGG | 0.409103 | 4.4:-36152854 | None:intergenic |
| GCTCGCTACCTTGATTCAAC+TGG | 0.409708 | 4.4:+36152469 | MS.gene057745:CDS |
| CCTCTTCAAAGAGATTCATT+TGG | 0.410159 | 4.4:+36153141 | MS.gene057745:CDS |
| CAGCAATACCCACAGGCTAT+AGG | 0.417769 | 4.4:+36152263 | MS.gene057745:CDS |
| AAGAACTTAAGCCAGTGCTC+AGG | 0.423259 | 4.4:-36155450 | None:intergenic |
| AAGAACTTAAGCCAGTGCTC+AGG | 0.423259 | 4.4:-36157600 | None:intergenic |
| TGAAGGATCAAGATGTAATA+CGG | 0.426213 | 4.4:+36154736 | MS.gene057745:CDS |
| TGAAGGATCAAGATGTAATA+CGG | 0.426213 | 4.4:+36156886 | MS.gene057745:CDS |
| GGATTTAGTCTTGGCATTAG+TGG | 0.434606 | 4.4:+36153318 | MS.gene057745:CDS |
| AATTGGTTTGACCTTTCAGC+TGG | 0.436228 | 4.4:+36154051 | MS.gene057745:CDS |
| AATTGGTTTGACCTTTCAGC+TGG | 0.436228 | 4.4:+36156201 | MS.gene057745:CDS |
| AATTGGTTTGACCTTTCAGC+TGG | 0.436228 | 4.4:+36158351 | MS.gene057745:CDS |
| AGCAATTCATTGGGATTTGA+GGG | 0.437075 | 4.4:+36153174 | MS.gene057745:CDS |
| ACAGACCGGTGAATCTGTTC+CGG | 0.444522 | 4.4:+36153461 | MS.gene057745:CDS |
| AAATAGTCCATTAACAAATT+GGG | 0.445619 | 4.4:-36154285 | None:intergenic |
| AAATAGTCCATTAACAAATT+GGG | 0.445619 | 4.4:-36156435 | None:intergenic |
| AAATAGTCCATTAACAAATT+GGG | 0.445619 | 4.4:-36158585 | None:intergenic |
| GGTGAATCTGTTCCGGATCC+AGG | 0.446637 | 4.4:+36153468 | MS.gene057745:CDS |
| GGATTTGAGGGTTATGTCGC+TGG | 0.446727 | 4.4:+36153186 | MS.gene057745:CDS |
| GTTTGAAATCGTTTCACCAT+AGG | 0.448203 | 4.4:-36152922 | None:intergenic |
| GTGATCTAGGTTCAGGTGTA+AGG | 0.449836 | 4.4:-36152807 | None:intergenic |
| ATAATTCGGTCGCGGAATCA+AGG | 0.450304 | 4.4:-36152726 | None:intergenic |
| ATGACTAAATCCATATAATT+CGG | 0.452067 | 4.4:-36152740 | None:intergenic |
| AGATGAAATGGTGGACTCAT+AGG | 0.454147 | 4.4:+36159130 | MS.gene057745:CDS |
| AAGCAATTCATTGGGATTTG+AGG | 0.455423 | 4.4:+36153173 | MS.gene057745:CDS |
| GCATCTCCAACAACAGGTTC+AGG | 0.456467 | 4.4:-36153593 | None:intergenic |
| GCATCTCCAACAACAGGTTC+AGG | 0.456467 | 4.4:-36155743 | None:intergenic |
| GCATCTCCAACAACAGGTTC+AGG | 0.456467 | 4.4:-36157893 | None:intergenic |
| TTTCATCTTGCAACTCGATA+GGG | 0.460559 | 4.4:-36159115 | None:intergenic |
| TCTTCAGCATCTCCAACAAC+AGG | 0.463831 | 4.4:-36153599 | None:intergenic |
| TCTTCAGCATCTCCAACAAC+AGG | 0.463831 | 4.4:-36155749 | None:intergenic |
| TCTTCAGCATCTCCAACAAC+AGG | 0.463831 | 4.4:-36157899 | None:intergenic |
| TCGATAGGGGCAATCAGCCC+TGG | 0.464759 | 4.4:-36159101 | None:intergenic |
| TATCGAGTTGCAAGATGAAA+TGG | 0.464848 | 4.4:+36159118 | MS.gene057745:CDS |
| GTTGGTCCAAGCAATTCATT+GGG | 0.464931 | 4.4:+36153165 | MS.gene057745:CDS |
| ACTGATCTGTTTGTCAAGCC+AGG | 0.466344 | 4.4:+36155512 | MS.gene057745:CDS |
| ACTGATCTGTTTGTCAAGCC+AGG | 0.466344 | 4.4:+36157662 | MS.gene057745:CDS |
| ACCTCAGTAGACGGTGTGCT+TGG | 0.467083 | 4.4:-36152232 | None:intergenic |
| TGTTCCGGATCCAGGTCTAA+TGG | 0.468272 | 4.4:+36153476 | MS.gene057745:CDS |
| AACAGGCCTGAACCTGTTGT+TGG | 0.470757 | 4.4:+36153587 | MS.gene057745:CDS |
| AACAGGCCTGAACCTGTTGT+TGG | 0.470757 | 4.4:+36155737 | MS.gene057745:CDS |
| AACAGGCCTGAACCTGTTGT+TGG | 0.470757 | 4.4:+36157887 | MS.gene057745:CDS |
| CTGGTTCTCGTCTGTAACCA+TGG | 0.477555 | 4.4:-36152335 | None:intergenic |
| AGATCCAAGAGGGGTGATCT+AGG | 0.478257 | 4.4:-36152820 | None:intergenic |
| AGCCGTCCGGAAGAGAATTA+GGG | 0.479027 | 4.4:+36152848 | MS.gene057745:CDS |
| TGAACGACATAAGGCTTAGC+AGG | 0.479224 | 4.4:-36152364 | None:intergenic |
| TTTGAAATCGTTTCACCATA+GGG | 0.482721 | 4.4:-36152921 | None:intergenic |
| AATTCTCTTCCGGACGGCTC+CGG | 0.483472 | 4.4:-36152844 | None:intergenic |
| CAAAGAGATTCATTTGGTGT+TGG | 0.483583 | 4.4:+36153147 | MS.gene057745:CDS |
| ATTTCATCTTGCAACTCGAT+AGG | 0.485254 | 4.4:-36159116 | None:intergenic |
| GGATTTAGCACGGCTATTGA+AGG | 0.485724 | 4.4:+36152529 | MS.gene057745:CDS |
| TGAACCTAGATCACCCCTCT+TGG | 0.487613 | 4.4:+36152816 | MS.gene057745:CDS |
| TTGGATCTTCCGGAGCCGTC+CGG | 0.490362 | 4.4:+36152835 | MS.gene057745:CDS |
| CAACAAAACCAGTTGAATCA+AGG | 0.493179 | 4.4:-36152477 | None:intergenic |
| TTCAGAAAGTGTGACTGCTC+AGG | 0.499137 | 4.4:+36153287 | MS.gene057745:CDS |
| TGGGTTCAAATTACATGTCC+TGG | 0.499157 | 4.4:+36153938 | MS.gene057745:CDS |
| TGGGTTCAAATTACATGTCC+TGG | 0.499157 | 4.4:+36156088 | MS.gene057745:CDS |
| TGGGTTCAAATTACATGTCC+TGG | 0.499157 | 4.4:+36158238 | MS.gene057745:CDS |
| GGCATTAGTGGAGGAAGTGT+TGG | 0.503757 | 4.4:+36153330 | MS.gene057745:CDS |
| TATCAGGAAATCTCGTATAT+GGG | 0.506963 | 4.4:-36154339 | None:intergenic |
| TATCAGGAAATCTCGTATAT+GGG | 0.506963 | 4.4:-36156489 | None:intergenic |
| TATCAGGAAATCTCGTATAT+GGG | 0.506963 | 4.4:-36158639 | None:intergenic |
| TCAAATCCCAATGAATTGCT+TGG | 0.513145 | 4.4:-36153171 | None:intergenic |
| AGGGCTCAGAGTTCTGTAAT+CGG | 0.514652 | 4.4:+36153844 | MS.gene057745:intron |
| AGGGCTCAGAGTTCTGTAAT+CGG | 0.514652 | 4.4:+36155994 | MS.gene057745:intron |
| AGGGCTCAGAGTTCTGTAAT+CGG | 0.514652 | 4.4:+36158144 | MS.gene057745:intron |
| ATATACTGTTGGTGATAGCC+AGG | 0.518895 | 4.4:+36153530 | MS.gene057745:CDS |
| CTGTGTGAGACATCATCTCC+TGG | 0.519426 | 4.4:-36153548 | None:intergenic |
| TCATCGGACACGGAGGTCGT+TGG | 0.522940 | 4.4:+36152443 | MS.gene057745:CDS |
| GCTCGAGATGGATTTAGTCT+TGG | 0.523861 | 4.4:+36153309 | MS.gene057745:CDS |
| CACCAGGACTGCCATCAAAA+CGG | 0.524241 | 4.4:+36153024 | MS.gene057745:CDS |
| AACTAATAGTGTTGGTGACA+TGG | 0.527218 | 4.4:+36153407 | MS.gene057745:CDS |
| TATCAAATTCCCTTGATCTA+CGG | 0.530821 | 4.4:-36153082 | None:intergenic |
| GCCGGAAATCAGGGACAGAC+CGG | 0.531397 | 4.4:+36153447 | MS.gene057745:CDS |
| CAAAGATCTCTATGCTGAAG+AGG | 0.531854 | 4.4:+36159034 | MS.gene057745:CDS |
| TTGAAGATTACCCTGAGCAC+TGG | 0.534874 | 4.4:+36155439 | MS.gene057745:CDS |
| TTGAAGATTACCCTGAGCAC+TGG | 0.534874 | 4.4:+36157589 | MS.gene057745:CDS |
| CACACCAGTTTCCAGCTGAA+AGG | 0.535911 | 4.4:-36154062 | None:intergenic |
| CACACCAGTTTCCAGCTGAA+AGG | 0.535911 | 4.4:-36156212 | None:intergenic |
| CACACCAGTTTCCAGCTGAA+AGG | 0.535911 | 4.4:-36158362 | None:intergenic |
| ACTTGTAGCAACATCCCAAA+GGG | 0.539515 | 4.4:-36154095 | None:intergenic |
| ACTTGTAGCAACATCCCAAA+GGG | 0.539515 | 4.4:-36156245 | None:intergenic |
| ACTTGTAGCAACATCCCAAA+GGG | 0.539515 | 4.4:-36158395 | None:intergenic |
| AATGATAGTTGGGGCACACC+AGG | 0.541222 | 4.4:+36153008 | MS.gene057745:CDS |
| CTATACGGCTCCGTAGATCA+AGG | 0.541830 | 4.4:+36153072 | MS.gene057745:CDS |
| GGGAAAACAATGAGTAGCTA+TGG | 0.541985 | 4.4:-36155487 | None:intergenic |
| GGGAAAACAATGAGTAGCTA+TGG | 0.541985 | 4.4:-36157637 | None:intergenic |
| AGCACTAGCAGTACAAACTA+CGG | 0.542916 | 4.4:+36153249 | MS.gene057745:CDS |
| CAGTTGTCAAGAAGTATGTC+CGG | 0.542997 | 4.4:-36153872 | None:intergenic |
| CAGTTGTCAAGAAGTATGTC+CGG | 0.542997 | 4.4:-36156022 | None:intergenic |
| CAGTTGTCAAGAAGTATGTC+CGG | 0.542997 | 4.4:-36158172 | None:intergenic |
| GACTTGTAGCAACATCCCAA+AGG | 0.543415 | 4.4:-36154096 | None:intergenic |
| GACTTGTAGCAACATCCCAA+AGG | 0.543415 | 4.4:-36156246 | None:intergenic |
| GACTTGTAGCAACATCCCAA+AGG | 0.543415 | 4.4:-36158396 | None:intergenic |
| AAGAGGGGTGATCTAGGTTC+AGG | 0.543692 | 4.4:-36152814 | None:intergenic |
| ATCTCTGAACCTATAGCCTG+TGG | 0.545601 | 4.4:-36152272 | None:intergenic |
| AGTCATGAAGCTGAAATCCA+TGG | 0.547019 | 4.4:+36153363 | MS.gene057745:CDS |
| GGGCATTTCGGCACACAGAA+AGG | 0.547271 | 4.4:+36155703 | MS.gene057745:CDS |
| GGGCATTTCGGCACACAGAA+AGG | 0.547271 | 4.4:+36157853 | MS.gene057745:CDS |
| ATGGATGGAAATTATAGGCC+AGG | 0.548256 | 4.4:+36154692 | MS.gene057745:CDS |
| ATGGATGGAAATTATAGGCC+AGG | 0.548256 | 4.4:+36156842 | MS.gene057745:CDS |
| GCACTAGCAGTACAAACTAC+GGG | 0.548779 | 4.4:+36153250 | MS.gene057745:CDS |
| GTAGAAGATGCCGGAAATCA+GGG | 0.550540 | 4.4:+36153438 | MS.gene057745:CDS |
| AGTTCTGTAATCGGTTCTAC+CGG | 0.553703 | 4.4:+36153853 | MS.gene057745:CDS |
| AGTTCTGTAATCGGTTCTAC+CGG | 0.553703 | 4.4:+36156003 | MS.gene057745:CDS |
| AGTTCTGTAATCGGTTCTAC+CGG | 0.553703 | 4.4:+36158153 | MS.gene057745:CDS |
| TCATCCATTAGACCTGGATC+CGG | 0.554763 | 4.4:-36153480 | None:intergenic |
| AGATGATGTCTCACACAGAA+AGG | 0.555784 | 4.4:+36153553 | MS.gene057745:CDS |
| CCAAATGAATCTCTTTGAAG+AGG | 0.559739 | 4.4:-36153141 | None:intergenic |
| GTCATGAAGCTGAAATCCAT+GGG | 0.561005 | 4.4:+36153364 | MS.gene057745:CDS |
| CCCAGGCTTATGAAAAGTAT+CGG | 0.564406 | 4.4:-36153919 | None:intergenic |
| CCCAGGCTTATGAAAAGTAT+CGG | 0.564406 | 4.4:-36156069 | None:intergenic |
| CCCAGGCTTATGAAAAGTAT+CGG | 0.564406 | 4.4:-36158219 | None:intergenic |
| TCAATCTCACCAGATAACTT+GGG | 0.564670 | 4.4:+36152888 | MS.gene057745:CDS |
| GTGACTGCTCAGGCTCGAGA+TGG | 0.569003 | 4.4:+36153297 | MS.gene057745:CDS |
| TTCATCTTGCAACTCGATAG+GGG | 0.569366 | 4.4:-36159114 | None:intergenic |
| CGAGTTACTAAAGTTGTATG+TGG | 0.569703 | 4.4:+36153213 | MS.gene057745:CDS |
| CTTGACAAACAGATCAGTGC+GGG | 0.570364 | 4.4:-36155507 | None:intergenic |
| CTTGACAAACAGATCAGTGC+GGG | 0.570364 | 4.4:-36157657 | None:intergenic |
| AAAGAATGCTTTCTATTCCA+GGG | 0.571488 | 4.4:+36159084 | MS.gene057745:CDS |
| ATAAACAGAAAATATACTGT+TGG | 0.577626 | 4.4:+36153519 | MS.gene057745:CDS |
| TATTGTGGAACGCATACCCA+AGG | 0.578019 | 4.4:+36152657 | MS.gene057745:CDS |
| ATCCCTAATTCTCTTCCGGA+CGG | 0.578227 | 4.4:-36152850 | None:intergenic |
| TATAGCCCCGGCATCTGAAG+AGG | 0.579588 | 4.4:-36153054 | None:intergenic |
| TCTCTATGCTGAAGAGGCTG+CGG | 0.580599 | 4.4:+36159040 | MS.gene057745:CDS |
| CGGCTCCGGAAGATCCAAGA+GGG | 0.582154 | 4.4:-36152830 | None:intergenic |
| TTGGGGAGGATACGACCCTA+TGG | 0.583331 | 4.4:+36152906 | MS.gene057745:CDS |
| TGGATCCGGAACAGATTCAC+CGG | 0.583877 | 4.4:-36153466 | None:intergenic |
| TTGTTATGGATTCAATCATG+TGG | 0.583890 | 4.4:+36155682 | MS.gene057745:CDS |
| TTGTTATGGATTCAATCATG+TGG | 0.583890 | 4.4:+36157832 | MS.gene057745:CDS |
| AAAACAAATGCTGAAGCACC+AGG | 0.588693 | 4.4:-36153956 | None:intergenic |
| AAAACAAATGCTGAAGCACC+AGG | 0.588693 | 4.4:-36156106 | None:intergenic |
| AAAACAAATGCTGAAGCACC+AGG | 0.588693 | 4.4:-36158256 | None:intergenic |
| AGGTATGCTGCTATTCCACT+AGG | 0.593452 | 4.4:-36152787 | None:intergenic |
| TAAATTGGAAAACATTACCA+TGG | 0.595273 | 4.4:+36152318 | MS.gene057745:CDS |
| TAAAGTTGTATGTGGTGAAG+TGG | 0.595629 | 4.4:+36153221 | MS.gene057745:CDS |
| AGAACTTAAGCCAGTGCTCA+GGG | 0.598705 | 4.4:-36155449 | None:intergenic |
| AGAACTTAAGCCAGTGCTCA+GGG | 0.598705 | 4.4:-36157599 | None:intergenic |
| GAACACCAAGTAGAAGATGC+CGG | 0.601340 | 4.4:+36153429 | MS.gene057745:CDS |
| TTTAGTCTTGGCATTAGTGG+AGG | 0.604536 | 4.4:+36153321 | MS.gene057745:CDS |
| ATTGTGGAACGCATACCCAA+GGG | 0.608293 | 4.4:+36152658 | MS.gene057745:CDS |
| AGCTTGCGGTGATGATGACA+TGG | 0.609097 | 4.4:+36152507 | MS.gene057745:CDS |
| TGTTATGGATTCAATCATGT+GGG | 0.609757 | 4.4:+36155683 | MS.gene057745:CDS |
| TGTTATGGATTCAATCATGT+GGG | 0.609757 | 4.4:+36157833 | MS.gene057745:CDS |
| AAAGTTGTATGTGGTGAAGT+GGG | 0.611045 | 4.4:+36153222 | MS.gene057745:CDS |
| GCACACAGAACTAATAGTGT+TGG | 0.612541 | 4.4:+36153399 | MS.gene057745:CDS |
| ATGATCTCATCCATTAGACC+TGG | 0.614047 | 4.4:-36153486 | None:intergenic |
| AGTATAACTGGCAGACCTAG+TGG | 0.615011 | 4.4:+36152772 | MS.gene057745:CDS |
| CGGCTCAGAGAGAAAGAGAA+CGG | 0.616816 | 4.4:+36159060 | MS.gene057745:CDS |
| GACCTAAGAACCTCAGTAGA+CGG | 0.623698 | 4.4:-36152241 | None:intergenic |
| GTATGCGTTCCACAATATAA+CGG | 0.624798 | 4.4:-36152651 | None:intergenic |
| CTTAGGTCAGCAATACCCAC+AGG | 0.624900 | 4.4:+36152256 | MS.gene057745:CDS |
| AGTGACAATTGTTGTTCTGG+CGG | 0.629448 | 4.4:+36152700 | MS.gene057745:CDS |
| AACAATGAGTAGCTATGGCG+CGG | 0.631317 | 4.4:-36155482 | None:intergenic |
| AACAATGAGTAGCTATGGCG+CGG | 0.631317 | 4.4:-36157632 | None:intergenic |
| TCTCTGAACCTATAGCCTGT+GGG | 0.631429 | 4.4:-36152271 | None:intergenic |
| TATACGGCTCCGTAGATCAA+GGG | 0.632850 | 4.4:+36153073 | MS.gene057745:CDS |
| AAATCCATATAATTCGGTCG+CGG | 0.633535 | 4.4:-36152734 | None:intergenic |
| CAATCTCACCAGATAACTTG+GGG | 0.633692 | 4.4:+36152889 | MS.gene057745:CDS |
| TGATGACATGGGATTTAGCA+CGG | 0.637049 | 4.4:+36152519 | MS.gene057745:CDS |
| ATAGCCCCGGCATCTGAAGA+GGG | 0.639094 | 4.4:-36153053 | None:intergenic |
| AAAACCCTCTTCAGATGCCG+GGG | 0.639129 | 4.4:+36153049 | MS.gene057745:CDS |
| TCCGAACATGACAACAGCTG+AGG | 0.645401 | 4.4:+36154186 | MS.gene057745:CDS |
| TCCGAACATGACAACAGCTG+AGG | 0.645401 | 4.4:+36156336 | MS.gene057745:CDS |
| TCCGAACATGACAACAGCTG+AGG | 0.645401 | 4.4:+36158486 | MS.gene057745:CDS |
| TCTACGGAGCCGTATAGCCC+CGG | 0.646817 | 4.4:-36153066 | None:intergenic |
| AGGACATGTAATTTGAACCC+AGG | 0.648020 | 4.4:-36153936 | None:intergenic |
| AGGACATGTAATTTGAACCC+AGG | 0.648020 | 4.4:-36156086 | None:intergenic |
| AGGACATGTAATTTGAACCC+AGG | 0.648020 | 4.4:-36158236 | None:intergenic |
| GCGTTACTTGGGTATGACTG+TGG | 0.648873 | 4.4:-36154118 | None:intergenic |
| GCGTTACTTGGGTATGACTG+TGG | 0.648873 | 4.4:-36156268 | None:intergenic |
| GCGTTACTTGGGTATGACTG+TGG | 0.648873 | 4.4:-36158418 | None:intergenic |
| GTGCAGATACATCTGCCCCA+TGG | 0.653457 | 4.4:-36153380 | None:intergenic |
| CGAGTTGCAAGATGAAATGG+TGG | 0.657463 | 4.4:+36159121 | MS.gene057745:CDS |
| TCTCACCAGATAACTTGGGG+AGG | 0.663026 | 4.4:+36152892 | MS.gene057745:CDS |
| TCCAAGCACACCGTCTACTG+AGG | 0.675584 | 4.4:+36152231 | MS.gene057745:CDS |
| TGTGGAACGCATACCCAAGG+GGG | 0.688048 | 4.4:+36152660 | MS.gene057745:CDS |
| TTTGTTGAATATCAAGCTTG+CGG | 0.692115 | 4.4:+36152493 | MS.gene057745:CDS |
| AGTTGAATCAAGGTAGCGAG+CGG | 0.699773 | 4.4:-36152467 | None:intergenic |
| GGCTCCGGAAGATCCAAGAG+GGG | 0.711215 | 4.4:-36152829 | None:intergenic |
| TTGTGGAACGCATACCCAAG+GGG | 0.715866 | 4.4:+36152659 | MS.gene057745:CDS |
| GACTTGGCGATAGCATGCGA+CGG | 0.716342 | 4.4:+36152967 | MS.gene057745:CDS |
| CACTAGCAGTACAAACTACG+GGG | 0.719610 | 4.4:+36153251 | MS.gene057745:CDS |
| ACGGCTCCGGAAGATCCAAG+AGG | 0.736592 | 4.4:-36152831 | None:intergenic |
| CTTGTAGCAACATCCCAAAG+GGG | 0.739875 | 4.4:-36154094 | None:intergenic |
| CTTGTAGCAACATCCCAAAG+GGG | 0.739875 | 4.4:-36156244 | None:intergenic |
| CTTGTAGCAACATCCCAAAG+GGG | 0.739875 | 4.4:-36158394 | None:intergenic |
| GCTTGACAAACAGATCAGTG+CGG | 0.742137 | 4.4:-36155508 | None:intergenic |
| GCTTGACAAACAGATCAGTG+CGG | 0.742137 | 4.4:-36157658 | None:intergenic |
| GCTTGCGGTGATGATGACAT+GGG | 0.763648 | 4.4:+36152508 | MS.gene057745:CDS |
| TCATGAAGCTGAAATCCATG+GGG | 0.767585 | 4.4:+36153365 | MS.gene057745:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 36152187 | 36159151 | 36152187 | ID=MS.gene057745 |
| chr4.4 | mRNA | 36152187 | 36159151 | 36152187 | ID=MS.gene057745.t1;Parent=MS.gene057745 |
| chr4.4 | exon | 36152187 | 36152550 | 36152187 | ID=MS.gene057745.t1.exon1;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36152187 | 36152550 | 36152187 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| chr4.4 | exon | 36152641 | 36153629 | 36152641 | ID=MS.gene057745.t1.exon2;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36152641 | 36153629 | 36152641 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| chr4.4 | exon | 36153846 | 36153983 | 36153846 | ID=MS.gene057745.t1.exon3;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36153846 | 36153983 | 36153846 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| chr4.4 | exon | 36154034 | 36154207 | 36154034 | ID=MS.gene057745.t1.exon4;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36154034 | 36154207 | 36154034 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| chr4.4 | exon | 36154281 | 36154385 | 36154281 | ID=MS.gene057745.t1.exon5;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36154281 | 36154385 | 36154281 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| chr4.4 | exon | 36154690 | 36154779 | 36154690 | ID=MS.gene057745.t1.exon6;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36154690 | 36154779 | 36154690 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| chr4.4 | exon | 36155423 | 36155533 | 36155423 | ID=MS.gene057745.t1.exon7;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36155423 | 36155533 | 36155423 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| chr4.4 | exon | 36155672 | 36155779 | 36155672 | ID=MS.gene057745.t1.exon8;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36155672 | 36155779 | 36155672 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| chr4.4 | exon | 36155996 | 36156133 | 36155996 | ID=MS.gene057745.t1.exon9;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36155996 | 36156133 | 36155996 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| chr4.4 | exon | 36156184 | 36156357 | 36156184 | ID=MS.gene057745.t1.exon10;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36156184 | 36156357 | 36156184 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| chr4.4 | exon | 36156431 | 36156535 | 36156431 | ID=MS.gene057745.t1.exon11;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36156431 | 36156535 | 36156431 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| chr4.4 | exon | 36156840 | 36156929 | 36156840 | ID=MS.gene057745.t1.exon12;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36156840 | 36156929 | 36156840 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| chr4.4 | exon | 36157573 | 36157683 | 36157573 | ID=MS.gene057745.t1.exon13;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36157573 | 36157683 | 36157573 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| chr4.4 | exon | 36157822 | 36157929 | 36157822 | ID=MS.gene057745.t1.exon14;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36157822 | 36157929 | 36157822 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| chr4.4 | exon | 36158146 | 36158283 | 36158146 | ID=MS.gene057745.t1.exon15;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36158146 | 36158283 | 36158146 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| chr4.4 | exon | 36158334 | 36158507 | 36158334 | ID=MS.gene057745.t1.exon16;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36158334 | 36158507 | 36158334 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| chr4.4 | exon | 36158581 | 36158685 | 36158581 | ID=MS.gene057745.t1.exon17;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36158581 | 36158685 | 36158581 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| chr4.4 | exon | 36159029 | 36159151 | 36159029 | ID=MS.gene057745.t1.exon18;Parent=MS.gene057745.t1 |
| chr4.4 | CDS | 36159029 | 36159151 | 36159029 | ID=cds.MS.gene057745.t1;Parent=MS.gene057745.t1 |
| Gene Sequence |
| Protein sequence |
