Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057769.t1 | XP_003607180.1 | 97.8 | 267 | 6 | 0 | 1 | 267 | 1 | 267 | 5.20E-109 | 404.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057769.t1 | Q8GTS2 | 61.4 | 267 | 83 | 6 | 1 | 266 | 1 | 248 | 1.4e-49 | 198.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057769.t1 | B7FIL7 | 97.8 | 267 | 6 | 0 | 1 | 267 | 1 | 267 | 3.7e-109 | 404.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene057769.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057769 | MS.gene66809 | 0.846225 | 2.48E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057769.t1 | MTR_4g073100 | 97.753 | 267 | 6 | 0 | 1 | 267 | 1 | 267 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057769.t1 | AT2G16770 | 61.798 | 267 | 82 | 6 | 1 | 266 | 1 | 248 | 3.58e-110 | 318 |
| MS.gene057769.t1 | AT2G16770 | 61.798 | 267 | 82 | 6 | 1 | 266 | 1 | 248 | 3.58e-110 | 318 |
| MS.gene057769.t1 | AT4G35040 | 63.838 | 271 | 82 | 8 | 1 | 266 | 1 | 260 | 5.64e-110 | 318 |
| MS.gene057769.t1 | AT4G35040 | 63.838 | 271 | 82 | 8 | 1 | 266 | 1 | 260 | 5.64e-110 | 318 |
| MS.gene057769.t1 | AT4G35040 | 63.838 | 271 | 82 | 8 | 1 | 266 | 1 | 260 | 5.64e-110 | 318 |
| MS.gene057769.t1 | AT4G35040 | 63.838 | 271 | 82 | 8 | 1 | 266 | 1 | 260 | 5.64e-110 | 318 |
| MS.gene057769.t1 | AT3G51960 | 54.478 | 134 | 54 | 3 | 39 | 171 | 13 | 140 | 1.96e-45 | 151 |
| MS.gene057769.t1 | AT3G51960 | 54.478 | 134 | 54 | 3 | 39 | 171 | 52 | 179 | 3.92e-45 | 152 |
| MS.gene057769.t1 | AT3G51960 | 52.239 | 134 | 56 | 2 | 39 | 171 | 52 | 178 | 1.11e-43 | 148 |
Find 80 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAGGATTGAAGGGGAAAT+TGG | 0.206995 | 4.4:+36457243 | MS.gene057769:CDS |
| GTGTTTGTTGGTTGATATTA+GGG | 0.255056 | 4.4:+36457221 | MS.gene057769:CDS |
| CCCAACCGGTCGCTTCTTAC+TGG | 0.266035 | 4.4:-36457046 | None:intergenic |
| GATCCTTGAGCCCCAAATTC+TGG | 0.270466 | 4.4:-36457467 | None:intergenic |
| AGTGTTTGTTGGTTGATATT+AGG | 0.273430 | 4.4:+36457220 | MS.gene057769:CDS |
| GTGTATGGGAGGCCAGAATT+TGG | 0.299733 | 4.4:+36457455 | MS.gene057769:CDS |
| TGTATGGGAGGCCAGAATTT+GGG | 0.316343 | 4.4:+36457456 | MS.gene057769:CDS |
| GTTGCAAGGGCAGGCTGCTT+TGG | 0.335855 | 4.4:+36457176 | MS.gene057769:CDS |
| ATATATTATTCATCCGGCTT+TGG | 0.355641 | 4.4:-36458398 | None:intergenic |
| GTTTGAAATTCAGCCATGTT+TGG | 0.367715 | 4.4:-36456829 | None:intergenic |
| CTCAAGGATCTTCGTGGTTG+TGG | 0.376487 | 4.4:+36457480 | MS.gene057769:CDS |
| GGAGGATTGAAGGGGAAATT+GGG | 0.382575 | 4.4:+36457244 | MS.gene057769:CDS |
| ATTTCAAACAAGTGGTTCAA+TGG | 0.405614 | 4.4:+36456843 | MS.gene057769:CDS |
| GTTTGAGAGTCTCCAGTGTA+TGG | 0.417641 | 4.4:+36457440 | MS.gene057769:CDS |
| TGCGAGGTTGAAGTGTTTGT+TGG | 0.420725 | 4.4:+36457209 | MS.gene057769:CDS |
| GCAAGGGCAGGCTGCTTTGG+AGG | 0.426440 | 4.4:+36457179 | MS.gene057769:CDS |
| GGCTGCGTCGTTGGAGGATG+AGG | 0.428168 | 4.4:+36457113 | MS.gene057769:CDS |
| TCATCACACTGCACATTACA+AGG | 0.429810 | 4.4:-36457336 | None:intergenic |
| CAACTTATATATTATTCATC+CGG | 0.437000 | 4.4:-36458404 | None:intergenic |
| GATCTTCGTGGTTGTGGAGG+TGG | 0.440100 | 4.4:+36457486 | MS.gene057769:CDS |
| ACCGCCTCTTTATTCCCAAC+CGG | 0.455765 | 4.4:-36457060 | None:intergenic |
| TCAGCAGCAATCTTCCCATC+TGG | 0.456534 | 4.4:-36457378 | None:intergenic |
| ACATTCGCGGGTTTCTGATA+CGG | 0.475335 | 4.4:-36457273 | None:intergenic |
| GAAAGCTAGGGCTGCGTCGT+TGG | 0.478279 | 4.4:+36457104 | MS.gene057769:CDS |
| GGGTCTCGTGCAGCCAAAGC+CGG | 0.486937 | 4.4:+36458385 | MS.gene057769:CDS |
| AGCTAGGGCTGCGTCGTTGG+AGG | 0.489293 | 4.4:+36457107 | MS.gene057769:CDS |
| CTGCTGAAGATGATCAGGTT+GGG | 0.489651 | 4.4:+36456989 | MS.gene057769:CDS |
| AGGCCAGAATTTGGGGCTCA+AGG | 0.491612 | 4.4:+36457464 | MS.gene057769:CDS |
| CAAGCTTCCAGTAAAAGAAA+AGG | 0.495698 | 4.4:+36457534 | MS.gene057769:CDS |
| ATCTTCAGCAGGGACAATCT+TGG | 0.499105 | 4.4:-36456977 | None:intergenic |
| TTGGGGCTCAAGGATCTTCG+TGG | 0.500226 | 4.4:+36457474 | MS.gene057769:CDS |
| CCATCGAATCCATCCTCATT+CGG | 0.507560 | 4.4:-36457411 | None:intergenic |
| GGGTTCATCACATGAGAGCC+AGG | 0.513240 | 4.4:-36457315 | None:intergenic |
| GCATATTGCCTTCGTCCAGA+TGG | 0.514127 | 4.4:+36457363 | MS.gene057769:CDS |
| TGTCCCTGCTGAAGATGATC+AGG | 0.516014 | 4.4:+36456984 | MS.gene057769:CDS |
| CCAGTAAGAAGCGACCGGTT+GGG | 0.517346 | 4.4:+36457046 | MS.gene057769:CDS |
| ATCGTGAGAAGAAGAAAGCT+AGG | 0.518063 | 4.4:+36457091 | MS.gene057769:CDS |
| TAATGTGCAGTGTGATGATC+GGG | 0.521659 | 4.4:+36457341 | MS.gene057769:CDS |
| CTTTGGAGGCCGAAGTTGCG+AGG | 0.525689 | 4.4:+36457193 | MS.gene057769:CDS |
| CCAACCTGATCATCTTCAGC+AGG | 0.525807 | 4.4:-36456988 | None:intergenic |
| GATGAGGAAGTTGCAAGGGC+AGG | 0.525833 | 4.4:+36457167 | MS.gene057769:CDS |
| TCCAGTAAGAAGCGACCGGT+TGG | 0.526553 | 4.4:+36457045 | MS.gene057769:CDS |
| AGGATGAGGTCATGAAATTG+AGG | 0.534541 | 4.4:+36457127 | MS.gene057769:CDS |
| ATCGCGGGATTCACATTCGC+GGG | 0.538798 | 4.4:-36457285 | None:intergenic |
| CATATTGCCTTCGTCCAGAT+GGG | 0.548979 | 4.4:+36457364 | MS.gene057769:CDS |
| AATTCTGGCCTCCCATACAC+TGG | 0.551814 | 4.4:-36457452 | None:intergenic |
| ATGGCTGAATTTCAAACAAG+TGG | 0.554218 | 4.4:+36456835 | MS.gene057769:CDS |
| GTGGCGTCGCCGAATGAGGA+TGG | 0.554803 | 4.4:+36457402 | MS.gene057769:CDS |
| GACCAGGTGGGTTACACGTG+TGG | 0.559695 | 4.4:-36456915 | None:intergenic |
| AATCCCGCGATGAATTTGCC+TGG | 0.562632 | 4.4:+36457297 | MS.gene057769:CDS |
| ACACTTCAACCTCGCAACTT+CGG | 0.570082 | 4.4:-36457202 | None:intergenic |
| GTTTGTTGGTTGATATTAGG+GGG | 0.578395 | 4.4:+36457223 | MS.gene057769:CDS |
| GGATGAGGTCATGAAATTGA+GGG | 0.578672 | 4.4:+36457128 | MS.gene057769:CDS |
| ACACGTGTGGGTATGAGTAC+AGG | 0.580524 | 4.4:-36456902 | None:intergenic |
| TGTTTGTTGGTTGATATTAG+GGG | 0.581606 | 4.4:+36457222 | MS.gene057769:CDS |
| GTAATGTGCAGTGTGATGAT+CGG | 0.581966 | 4.4:+36457340 | MS.gene057769:CDS |
| GAAGTCCAGTAAGAAGCGAC+CGG | 0.585566 | 4.4:+36457041 | MS.gene057769:CDS |
| TTTGAGAGTCTCCAGTGTAT+GGG | 0.588557 | 4.4:+36457441 | MS.gene057769:CDS |
| GTATGGGAGGCCAGAATTTG+GGG | 0.595109 | 4.4:+36457457 | MS.gene057769:CDS |
| ATTTGATGAGGAAGTTGCAA+GGG | 0.596253 | 4.4:+36457163 | MS.gene057769:CDS |
| CCGAATGAGGATGGATTCGA+TGG | 0.597469 | 4.4:+36457411 | MS.gene057769:CDS |
| TGAAGTGGCGTCGCCGAATG+AGG | 0.598815 | 4.4:+36457398 | MS.gene057769:CDS |
| CATCGCGGGATTCACATTCG+CGG | 0.599241 | 4.4:-36457286 | None:intergenic |
| AAGGATCTTCGTGGTTGTGG+AGG | 0.602836 | 4.4:+36457483 | MS.gene057769:CDS |
| CATTTGATGAGGAAGTTGCA+AGG | 0.604562 | 4.4:+36457162 | MS.gene057769:CDS |
| ACCCACACGTGTAACCCACC+TGG | 0.607124 | 4.4:+36456913 | MS.gene057769:CDS |
| ACCAGGTGGGTTACACGTGT+GGG | 0.610384 | 4.4:-36456914 | None:intergenic |
| GAGCCAGGCAAATTCATCGC+GGG | 0.610422 | 4.4:-36457300 | None:intergenic |
| TCGTGAGAAGAAGAAAGCTA+GGG | 0.612179 | 4.4:+36457092 | MS.gene057769:CDS |
| TGGGAAGATTGCTGCTGAAG+TGG | 0.614233 | 4.4:+36457383 | MS.gene057769:CDS |
| CTTTGAATCAGCATTTGATG+AGG | 0.616238 | 4.4:+36457151 | MS.gene057769:CDS |
| CAATCTTCCCATCTGGACGA+AGG | 0.622375 | 4.4:-36457371 | None:intergenic |
| CCTGCTGAAGATGATCAGGT+TGG | 0.627520 | 4.4:+36456988 | MS.gene057769:CDS |
| GAGAGTCTCCAGTGTATGGG+AGG | 0.629740 | 4.4:+36457444 | MS.gene057769:CDS |
| GCGACCGGTTGGGAATAAAG+AGG | 0.649541 | 4.4:+36457056 | MS.gene057769:CDS |
| CAACCTGATCATCTTCAGCA+GGG | 0.684116 | 4.4:-36456987 | None:intergenic |
| ACCGGTTGGGAATAAAGAGG+CGG | 0.690479 | 4.4:+36457059 | MS.gene057769:CDS |
| CATCACACTGCACATTACAA+GGG | 0.696358 | 4.4:-36457335 | None:intergenic |
| AGAGCCAGGCAAATTCATCG+CGG | 0.740100 | 4.4:-36457301 | None:intergenic |
| GAATTGACATTAGACAACGT+CGG | 0.759673 | 4.4:-36457510 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATAATGCAAAAACAAATA+AGG | - | chr4.4:36457823-36457842 | None:intergenic | 20.0% |
| !! | CATAATGCAAAAACAAATAA+GGG | - | chr4.4:36457822-36457841 | None:intergenic | 20.0% |
| !! | TTGGAGAAATTGAAATTTAA+AGG | + | chr4.4:36458144-36458163 | MS.gene057769:intron | 20.0% |
| !!! | TAACAGATCTTTATTTAACA+GGG | + | chr4.4:36458362-36458381 | MS.gene057769:intron | 20.0% |
| !!! | TTTTTTTGATGAATTGTTGA+AGG | + | chr4.4:36456870-36456889 | MS.gene057769:CDS | 20.0% |
| ! | TATATGTATGAGTTAACAAG+TGG | + | chr4.4:36458091-36458110 | MS.gene057769:intron | 25.0% |
| !! | AACAGATCTTTATTTAACAG+GGG | + | chr4.4:36458363-36458382 | MS.gene057769:intron | 25.0% |
| !! | CTAACAGATCTTTATTTAAC+AGG | + | chr4.4:36458361-36458380 | MS.gene057769:intron | 25.0% |
| !! | TCATACATATATAAAGCATC+TGG | - | chr4.4:36458082-36458101 | None:intergenic | 25.0% |
| AAACCATGACAAAAAATGCT+AGG | - | chr4.4:36457676-36457695 | None:intergenic | 30.0% | |
| AACAAAAGCCTTTCCATATA+AGG | - | chr4.4:36457881-36457900 | None:intergenic | 30.0% | |
| ACTCTGGTGTAATTACTTTA+GGG | + | chr4.4:36458292-36458311 | MS.gene057769:intron | 30.0% | |
| ATTTCAAACAAGTGGTTCAA+TGG | + | chr4.4:36456843-36456862 | MS.gene057769:CDS | 30.0% | |
| CTAACAAGAACTCTATAAGT+TGG | - | chr4.4:36458049-36458068 | None:intergenic | 30.0% | |
| TGGAAGATCTTGTCATAATT+TGG | - | chr4.4:36458119-36458138 | None:intergenic | 30.0% | |
| ! | ACAGATCTTTATTTAACAGG+GGG | + | chr4.4:36458364-36458383 | MS.gene057769:intron | 30.0% |
| ! | AGTGTTTGTTGGTTGATATT+AGG | + | chr4.4:36457220-36457239 | MS.gene057769:CDS | 30.0% |
| ! | GATCTGTTAGACCATTTTAA+AGG | - | chr4.4:36458351-36458370 | None:intergenic | 30.0% |
| ! | GTGTTTGTTGGTTGATATTA+GGG | + | chr4.4:36457221-36457240 | MS.gene057769:CDS | 30.0% |
| ! | TGTTTGTTGGTTGATATTAG+GGG | + | chr4.4:36457222-36457241 | MS.gene057769:CDS | 30.0% |
| ! | TTGCTTCTCATCCTTTAAAA+TGG | + | chr4.4:36458337-36458356 | MS.gene057769:intron | 30.0% |
| !! | AGAGTTCTTGTTAGTTTGTA+TGG | + | chr4.4:36458055-36458074 | MS.gene057769:intron | 30.0% |
| !!! | AGCATTTTTTGTCATGGTTT+GGG | + | chr4.4:36457676-36457695 | MS.gene057769:intron | 30.0% |
| !!! | TAGCATTTTTTGTCATGGTT+TGG | + | chr4.4:36457675-36457694 | MS.gene057769:intron | 30.0% |
| ACGAGACAAACAATCATCAT+TGG | - | chr4.4:36457704-36457723 | None:intergenic | 35.0% | |
| AGAGTCAATCACAATTGCTT+TGG | - | chr4.4:36458277-36458296 | None:intergenic | 35.0% | |
| ATGCACATACTCTACTAGAA+AGG | + | chr4.4:36457569-36457588 | MS.gene057769:intron | 35.0% | |
| ATGGCTGAATTTCAAACAAG+TGG | + | chr4.4:36456835-36456854 | MS.gene057769:CDS | 35.0% | |
| ATTTGATGAGGAAGTTGCAA+GGG | + | chr4.4:36457163-36457182 | MS.gene057769:CDS | 35.0% | |
| CAAGCTTCCAGTAAAAGAAA+AGG | + | chr4.4:36457534-36457553 | MS.gene057769:CDS | 35.0% | |
| CTTTGAATCAGCATTTGATG+AGG | + | chr4.4:36457151-36457170 | MS.gene057769:CDS | 35.0% | |
| GAATTGACATTAGACAACGT+CGG | - | chr4.4:36457513-36457532 | None:intergenic | 35.0% | |
| GACTCTGGTGTAATTACTTT+AGG | + | chr4.4:36458291-36458310 | MS.gene057769:intron | 35.0% | |
| TGCACATACTCTACTAGAAA+GGG | + | chr4.4:36457570-36457589 | MS.gene057769:intron | 35.0% | |
| TTAAAATCCGGAATGAGCAA+GGG | - | chr4.4:36457995-36458014 | None:intergenic | 35.0% | |
| TTATGACAAGATCTTCCAGT+AGG | + | chr4.4:36458121-36458140 | MS.gene057769:intron | 35.0% | |
| TTTCAATTTCTCCAACCTAC+TGG | - | chr4.4:36458139-36458158 | None:intergenic | 35.0% | |
| ! | AAAGCAATTGTGATTGACTC+TGG | + | chr4.4:36458276-36458295 | MS.gene057769:intron | 35.0% |
| ! | CAGATCTTTATTTAACAGGG+GGG | + | chr4.4:36458365-36458384 | MS.gene057769:intron | 35.0% |
| ! | GTCATCACCTTTTCTTTTAC+TGG | - | chr4.4:36457544-36457563 | None:intergenic | 35.0% |
| ! | GTTTGAAATTCAGCCATGTT+TGG | - | chr4.4:36456832-36456851 | None:intergenic | 35.0% |
| ! | GTTTGTTGGTTGATATTAGG+GGG | + | chr4.4:36457223-36457242 | MS.gene057769:CDS | 35.0% |
| ! | TGCTCATTCCGGATTTTAAA+GGG | + | chr4.4:36457996-36458015 | MS.gene057769:intron | 35.0% |
| ! | TTGCTCATTCCGGATTTTAA+AGG | + | chr4.4:36457995-36458014 | MS.gene057769:intron | 35.0% |
| ! | TTTAAAATCCGGAATGAGCA+AGG | - | chr4.4:36457996-36458015 | None:intergenic | 35.0% |
| !! | ACTAGACTCCCTTTAAAATC+CGG | - | chr4.4:36458007-36458026 | None:intergenic | 35.0% |
| !!! | CATCCTAGCATTTTTTGTCA+TGG | + | chr4.4:36457670-36457689 | MS.gene057769:intron | 35.0% |
| !!! | TCTCAACTTTTTCGTACAGT+GGG | - | chr4.4:36458205-36458224 | None:intergenic | 35.0% |
| AATGTTACCCTTGCTCATTC+CGG | + | chr4.4:36457985-36458004 | MS.gene057769:intron | 40.0% | |
| AGGATGAGGTCATGAAATTG+AGG | + | chr4.4:36457127-36457146 | MS.gene057769:CDS | 40.0% | |
| ATATTAGGGGGAGGATTGAA+GGG | + | chr4.4:36457235-36457254 | MS.gene057769:CDS | 40.0% | |
| ATCGTGAGAAGAAGAAAGCT+AGG | + | chr4.4:36457091-36457110 | MS.gene057769:CDS | 40.0% | |
| CATCACACTGCACATTACAA+GGG | - | chr4.4:36457338-36457357 | None:intergenic | 40.0% | |
| CATTTGATGAGGAAGTTGCA+AGG | + | chr4.4:36457162-36457181 | MS.gene057769:CDS | 40.0% | |
| GGATGAGGTCATGAAATTGA+GGG | + | chr4.4:36457128-36457147 | MS.gene057769:CDS | 40.0% | |
| GTAATGTGCAGTGTGATGAT+CGG | + | chr4.4:36457340-36457359 | MS.gene057769:CDS | 40.0% | |
| GTGTGAGTGTGTGAAAAATC+AGG | - | chr4.4:36456940-36456959 | None:intergenic | 40.0% | |
| TAATGTGCAGTGTGATGATC+GGG | + | chr4.4:36457341-36457360 | MS.gene057769:CDS | 40.0% | |
| TCATCACACTGCACATTACA+AGG | - | chr4.4:36457339-36457358 | None:intergenic | 40.0% | |
| TCGTGAGAAGAAGAAAGCTA+GGG | + | chr4.4:36457092-36457111 | MS.gene057769:CDS | 40.0% | |
| TGACTCTGCCTTATATGGAA+AGG | + | chr4.4:36457870-36457889 | MS.gene057769:intron | 40.0% | |
| TTTGAGAGTCTCCAGTGTAT+GGG | + | chr4.4:36457441-36457460 | MS.gene057769:CDS | 40.0% | |
| !!! | GTCTCAACTTTTTCGTACAG+TGG | - | chr4.4:36458206-36458225 | None:intergenic | 40.0% |
| ACACTTCAACCTCGCAACTT+CGG | - | chr4.4:36457205-36457224 | None:intergenic | 45.0% | |
| ACATTCGCGGGTTTCTGATA+CGG | - | chr4.4:36457276-36457295 | None:intergenic | 45.0% | |
| ATCTTCAGCAGGGACAATCT+TGG | - | chr4.4:36456980-36456999 | None:intergenic | 45.0% | |
| CAACCTGATCATCTTCAGCA+GGG | - | chr4.4:36456990-36457009 | None:intergenic | 45.0% | |
| CATATTGCCTTCGTCCAGAT+GGG | + | chr4.4:36457364-36457383 | MS.gene057769:CDS | 45.0% | |
| CCATCGAATCCATCCTCATT+CGG | - | chr4.4:36457414-36457433 | None:intergenic | 45.0% | |
| CTGCTGAAGATGATCAGGTT+GGG | + | chr4.4:36456989-36457008 | MS.gene057769:CDS | 45.0% | |
| GACAAGATCTTCCAGTAGGT+TGG | + | chr4.4:36458125-36458144 | MS.gene057769:intron | 45.0% | |
| GATATTAGGGGGAGGATTGA+AGG | + | chr4.4:36457234-36457253 | MS.gene057769:CDS | 45.0% | |
| GGAGGATTGAAGGGGAAATT+GGG | + | chr4.4:36457244-36457263 | MS.gene057769:CDS | 45.0% | |
| GTGAAAAATCAGGACCAGGT+GGG | - | chr4.4:36456930-36456949 | None:intergenic | 45.0% | |
| GTGTGTGAAAAATCAGGACC+AGG | - | chr4.4:36456934-36456953 | None:intergenic | 45.0% | |
| GTTTGAGAGTCTCCAGTGTA+TGG | + | chr4.4:36457440-36457459 | MS.gene057769:CDS | 45.0% | |
| TATTAGGGGGAGGATTGAAG+GGG | + | chr4.4:36457236-36457255 | MS.gene057769:CDS | 45.0% | |
| TGTATGGGAGGCCAGAATTT+GGG | + | chr4.4:36457456-36457475 | MS.gene057769:CDS | 45.0% | |
| TGTGAAAAATCAGGACCAGG+TGG | - | chr4.4:36456931-36456950 | None:intergenic | 45.0% | |
| ! | GTAGCTGACTCTGCCTTATA+TGG | + | chr4.4:36457865-36457884 | MS.gene057769:intron | 45.0% |
| ! | TGCGAGGTTGAAGTGTTTGT+TGG | + | chr4.4:36457209-36457228 | MS.gene057769:CDS | 45.0% |
| ! | TGTTGGTTGATATTAGGGGG+AGG | + | chr4.4:36457226-36457245 | MS.gene057769:CDS | 45.0% |
| !!! | CGTGTTTTCGAGTCCAAACA+TGG | + | chr4.4:36456816-36456835 | MS.gene057769:CDS | 45.0% |
| AAGGATCTTCGTGGTTGTGG+AGG | + | chr4.4:36457483-36457502 | MS.gene057769:CDS | 50.0% | |
| AATCCCGCGATGAATTTGCC+TGG | + | chr4.4:36457297-36457316 | MS.gene057769:CDS | 50.0% | |
| AATTCTGGCCTCCCATACAC+TGG | - | chr4.4:36457455-36457474 | None:intergenic | 50.0% | |
| ACACGTGTGGGTATGAGTAC+AGG | - | chr4.4:36456905-36456924 | None:intergenic | 50.0% | |
| ACCGCCTCTTTATTCCCAAC+CGG | - | chr4.4:36457063-36457082 | None:intergenic | 50.0% | |
| ACCGGTTGGGAATAAAGAGG+CGG | + | chr4.4:36457059-36457078 | MS.gene057769:CDS | 50.0% | |
| AGAGCCAGGCAAATTCATCG+CGG | - | chr4.4:36457304-36457323 | None:intergenic | 50.0% | |
| CAATCTTCCCATCTGGACGA+AGG | - | chr4.4:36457374-36457393 | None:intergenic | 50.0% | |
| CCAACCTGATCATCTTCAGC+AGG | - | chr4.4:36456991-36457010 | None:intergenic | 50.0% | |
| CCTGCTGAAGATGATCAGGT+TGG | + | chr4.4:36456988-36457007 | MS.gene057769:CDS | 50.0% | |
| CTCAAGGATCTTCGTGGTTG+TGG | + | chr4.4:36457480-36457499 | MS.gene057769:CDS | 50.0% | |
| GAAGTCCAGTAAGAAGCGAC+CGG | + | chr4.4:36457041-36457060 | MS.gene057769:CDS | 50.0% | |
| GATCCTTGAGCCCCAAATTC+TGG | - | chr4.4:36457470-36457489 | None:intergenic | 50.0% | |
| GCATATTGCCTTCGTCCAGA+TGG | + | chr4.4:36457363-36457382 | MS.gene057769:CDS | 50.0% | |
| GGGAGGATTGAAGGGGAAAT+TGG | + | chr4.4:36457243-36457262 | MS.gene057769:CDS | 50.0% | |
| GTATGGGAGGCCAGAATTTG+GGG | + | chr4.4:36457457-36457476 | MS.gene057769:CDS | 50.0% | |
| GTGTATGGGAGGCCAGAATT+TGG | + | chr4.4:36457455-36457474 | MS.gene057769:CDS | 50.0% | |
| TCAGCAGCAATCTTCCCATC+TGG | - | chr4.4:36457381-36457400 | None:intergenic | 50.0% | |
| TGGGAAGATTGCTGCTGAAG+TGG | + | chr4.4:36457383-36457402 | MS.gene057769:CDS | 50.0% | |
| TGTCCCTGCTGAAGATGATC+AGG | + | chr4.4:36456984-36457003 | MS.gene057769:CDS | 50.0% | |
| ! | CCGAATGAGGATGGATTCGA+TGG | + | chr4.4:36457411-36457430 | MS.gene057769:CDS | 50.0% |
| ATCGCGGGATTCACATTCGC+GGG | - | chr4.4:36457288-36457307 | None:intergenic | 55.0% | |
| CATCGCGGGATTCACATTCG+CGG | - | chr4.4:36457289-36457308 | None:intergenic | 55.0% | |
| CCAGTAAGAAGCGACCGGTT+GGG | + | chr4.4:36457046-36457065 | MS.gene057769:CDS | 55.0% | |
| GAGAGTCTCCAGTGTATGGG+AGG | + | chr4.4:36457444-36457463 | MS.gene057769:CDS | 55.0% | |
| GAGCCAGGCAAATTCATCGC+GGG | - | chr4.4:36457303-36457322 | None:intergenic | 55.0% | |
| GATCTTCGTGGTTGTGGAGG+TGG | + | chr4.4:36457486-36457505 | MS.gene057769:CDS | 55.0% | |
| GATGAGGAAGTTGCAAGGGC+AGG | + | chr4.4:36457167-36457186 | MS.gene057769:CDS | 55.0% | |
| GCGACCGGTTGGGAATAAAG+AGG | + | chr4.4:36457056-36457075 | MS.gene057769:CDS | 55.0% | |
| GGGTTCATCACATGAGAGCC+AGG | - | chr4.4:36457318-36457337 | None:intergenic | 55.0% | |
| TCCAGTAAGAAGCGACCGGT+TGG | + | chr4.4:36457045-36457064 | MS.gene057769:CDS | 55.0% | |
| TTGGGGCTCAAGGATCTTCG+TGG | + | chr4.4:36457474-36457493 | MS.gene057769:CDS | 55.0% | |
| ! | AGGCCAGAATTTGGGGCTCA+AGG | + | chr4.4:36457464-36457483 | MS.gene057769:CDS | 55.0% |
| !! | ACCAGGTGGGTTACACGTGT+GGG | - | chr4.4:36456917-36456936 | None:intergenic | 55.0% |
| ACCCACACGTGTAACCCACC+TGG | + | chr4.4:36456913-36456932 | MS.gene057769:CDS | 60.0% | |
| CCCAACCGGTCGCTTCTTAC+TGG | - | chr4.4:36457049-36457068 | None:intergenic | 60.0% | |
| GAAAGCTAGGGCTGCGTCGT+TGG | + | chr4.4:36457104-36457123 | MS.gene057769:CDS | 60.0% | |
| GTTGCAAGGGCAGGCTGCTT+TGG | + | chr4.4:36457176-36457195 | MS.gene057769:CDS | 60.0% | |
| TGAAGTGGCGTCGCCGAATG+AGG | + | chr4.4:36457398-36457417 | MS.gene057769:CDS | 60.0% | |
| ! | CTTTGGAGGCCGAAGTTGCG+AGG | + | chr4.4:36457193-36457212 | MS.gene057769:CDS | 60.0% |
| !! | GACCAGGTGGGTTACACGTG+TGG | - | chr4.4:36456918-36456937 | None:intergenic | 60.0% |
| AGCTAGGGCTGCGTCGTTGG+AGG | + | chr4.4:36457107-36457126 | MS.gene057769:CDS | 65.0% | |
| GGCTGCGTCGTTGGAGGATG+AGG | + | chr4.4:36457113-36457132 | MS.gene057769:CDS | 65.0% | |
| GGGTCTCGTGCAGCCAAAGC+CGG | + | chr4.4:36458385-36458404 | MS.gene057769:CDS | 65.0% | |
| GTGGCGTCGCCGAATGAGGA+TGG | + | chr4.4:36457402-36457421 | MS.gene057769:CDS | 65.0% | |
| ! | GCAAGGGCAGGCTGCTTTGG+AGG | + | chr4.4:36457179-36457198 | MS.gene057769:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 36456781 | 36458411 | 36456781 | ID=MS.gene057769 |
| chr4.4 | mRNA | 36456781 | 36458411 | 36456781 | ID=MS.gene057769.t1;Parent=MS.gene057769 |
| chr4.4 | exon | 36456781 | 36457555 | 36456781 | ID=MS.gene057769.t1.exon1;Parent=MS.gene057769.t1 |
| chr4.4 | CDS | 36456781 | 36457555 | 36456781 | ID=cds.MS.gene057769.t1;Parent=MS.gene057769.t1 |
| chr4.4 | exon | 36458383 | 36458411 | 36458383 | ID=MS.gene057769.t1.exon2;Parent=MS.gene057769.t1 |
| chr4.4 | CDS | 36458383 | 36458411 | 36458383 | ID=cds.MS.gene057769.t1;Parent=MS.gene057769.t1 |
| Gene Sequence |
| Protein sequence |
