AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058343

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058343.t1 MTR_3g007600 92.857 98 7 0 1 98 256 353 1.57e-64 198
MS.gene058343.t1 MTR_3g007510 92.857 98 7 0 1 98 737 834 6.62e-59 193
MS.gene058343.t1 MTR_3g007510 92.857 98 7 0 1 98 734 831 7.03e-59 192
MS.gene058343.t1 MTR_3g007510 92.857 98 7 0 1 98 733 830 7.72e-59 192
MS.gene058343.t1 MTR_3g007630 90.722 97 9 0 1 97 730 826 1.85e-57 189
MS.gene058343.t1 MTR_3g007650 77.228 101 20 1 1 98 742 842 2.70e-46 158
MS.gene058343.t1 MTR_3g037690 58.000 100 40 1 1 98 148 247 2.56e-35 120
MS.gene058343.t1 MTR_0090s0020 59.406 101 38 1 1 98 715 815 5.17e-33 120
MS.gene058343.t1 MTR_5g067250 57.143 98 38 1 1 98 719 812 4.79e-31 114
MS.gene058343.t1 MTR_5g067310 53.000 100 45 1 1 98 225 324 3.82e-30 109
MS.gene058343.t1 MTR_5g055070 59.406 101 38 1 1 98 716 816 2.86e-29 109
MS.gene058343.t1 MTR_5g055070 59.406 101 38 1 1 98 674 774 3.05e-29 109
MS.gene058343.t1 MTR_2g011170 50.505 99 48 1 1 98 718 816 3.99e-26 100
MS.gene058343.t1 MTR_8g465510 49.495 99 46 2 1 98 683 778 1.92e-25 99.0
MS.gene058343.t1 MTR_4g091670 46.602 103 50 2 1 98 750 852 2.30e-25 98.6
MS.gene058343.t1 MTR_4g081675 48.544 103 48 2 1 98 721 823 1.67e-24 96.3
MS.gene058343.t1 MTR_2g011180 46.667 105 49 2 1 98 748 852 1.91e-24 95.9
MS.gene058343.t1 MTR_2g011160 50.000 100 46 3 1 98 749 846 4.28e-24 95.1
MS.gene058343.t1 MTR_8g465990 44.554 101 53 1 1 98 724 824 5.62e-23 92.0
MS.gene058343.t1 MTR_8g465990 44.554 101 53 1 1 98 686 786 5.72e-23 91.7
MS.gene058343.t1 MTR_8g052350 42.105 95 54 1 1 94 43 137 7.25e-23 86.3
MS.gene058343.t1 MTR_8g041820 43.137 102 53 2 2 98 153 254 8.68e-23 88.6
MS.gene058343.t1 MTR_3g019500 51.000 100 47 2 1 98 724 823 1.15e-22 90.9
MS.gene058343.t1 MTR_4g081640 54.545 77 35 0 1 77 685 761 1.17e-22 90.9
MS.gene058343.t1 MTR_3g019390 48.077 104 48 2 1 98 717 820 1.70e-22 90.5
MS.gene058343.t1 MTR_8g465980 50.000 102 47 1 1 98 708 809 1.77e-22 90.5
MS.gene058343.t1 MTR_3g019420 47.115 104 49 1 1 98 718 821 2.80e-22 89.7
MS.gene058343.t1 MTR_4g081655 45.000 100 53 1 1 98 722 821 3.53e-22 89.7
MS.gene058343.t1 MTR_8g041690 44.444 99 50 3 2 95 561 659 3.73e-22 89.4
MS.gene058343.t1 MTR_3g019580 51.000 100 47 2 1 98 689 788 7.23e-22 88.6
MS.gene058343.t1 MTR_8g052050 43.750 96 53 1 1 95 702 797 7.83e-22 88.6
MS.gene058343.t1 MTR_3g019580 51.000 100 47 2 1 98 721 820 7.99e-22 88.6
MS.gene058343.t1 MTR_8g052120 45.238 84 45 1 1 83 673 756 8.95e-22 88.6
MS.gene058343.t1 MTR_8g052080 43.750 96 53 1 1 95 703 798 9.60e-22 88.2
MS.gene058343.t1 MTR_8g051840 45.238 84 45 1 1 83 49 132 1.56e-21 82.8
MS.gene058343.t1 MTR_8g052513 46.429 84 44 1 1 83 680 763 2.19e-21 87.4
MS.gene058343.t1 MTR_8g052570 42.105 95 54 1 1 94 280 374 2.29e-21 86.7
MS.gene058343.t1 MTR_8g052517 42.105 95 54 1 1 94 280 374 2.29e-21 86.7
MS.gene058343.t1 MTR_4g081685 44.860 107 46 3 1 98 722 824 4.09e-21 86.7
MS.gene058343.t1 MTR_8g465590 43.878 98 51 1 1 98 56 149 4.74e-21 81.6
MS.gene058343.t1 MTR_8g052200 42.105 95 54 1 1 94 680 774 5.41e-21 86.3
MS.gene058343.t1 MTR_8g052170 45.238 84 45 1 1 83 254 337 6.58e-21 85.1
MS.gene058343.t1 MTR_3g051420 46.000 100 52 1 1 98 681 780 7.53e-21 85.9
MS.gene058343.t1 MTR_2g081500 43.000 100 54 2 1 98 719 817 1.31e-20 85.1
MS.gene058343.t1 MTR_8g052060 40.625 96 56 1 1 95 659 754 1.40e-20 85.1
MS.gene058343.t1 MTR_8g052420 40.625 96 56 1 1 95 683 778 1.47e-20 85.1
MS.gene058343.t1 MTR_8g041660 43.564 101 52 3 2 98 554 653 1.64e-20 84.7
MS.gene058343.t1 MTR_3g020330 48.485 99 48 2 1 98 673 769 1.70e-20 84.7
MS.gene058343.t1 MTR_1g105650 50.685 73 35 1 1 72 571 643 2.01e-20 84.7
MS.gene058343.t1 MTR_4g081650 51.282 78 37 1 1 77 716 793 3.65e-20 84.0
MS.gene058343.t1 MTR_3g019490 47.475 99 51 1 1 98 712 810 5.76e-20 83.2
MS.gene058343.t1 MTR_8g041710 43.564 101 53 2 2 98 552 652 7.32e-20 82.8
MS.gene058343.t1 MTR_2g081520 45.000 100 52 2 1 98 718 816 7.72e-20 82.8
MS.gene058343.t1 MTR_2g081520 45.000 100 52 2 1 98 722 820 7.72e-20 82.8
MS.gene058343.t1 MTR_8g052490 40.000 95 56 1 1 94 281 375 9.14e-20 82.4
MS.gene058343.t1 MTR_8g051600 39.394 99 54 2 1 93 691 789 9.64e-20 82.8
MS.gene058343.t1 MTR_8g052290 40.000 95 56 1 1 94 307 401 9.91e-20 82.4
MS.gene058343.t1 MTR_3g415610 44.444 99 48 2 1 98 440 532 1.14e-19 82.4
MS.gene058343.t1 MTR_2g081470 43.000 100 54 2 1 98 717 815 1.33e-19 82.4
MS.gene058343.t1 MTR_3g019530 48.000 100 50 2 1 98 718 817 1.63e-19 82.0
MS.gene058343.t1 MTR_3g019530 48.000 100 50 2 1 98 724 823 1.73e-19 82.0
MS.gene058343.t1 MTR_3g019530 48.000 100 50 2 1 98 679 778 1.74e-19 82.0
MS.gene058343.t1 MTR_8g041910 43.564 101 53 3 2 98 569 669 1.94e-19 81.6
MS.gene058343.t1 MTR_8g052190 40.000 95 56 1 1 94 695 789 2.02e-19 81.6
MS.gene058343.t1 MTR_8g052190 40.000 95 56 1 1 94 694 788 2.10e-19 81.6
MS.gene058343.t1 MTR_4g091680 44.000 100 54 1 1 98 705 804 2.12e-19 81.6
MS.gene058343.t1 MTR_3g020230 43.878 98 52 2 1 98 682 776 2.31e-19 81.6
MS.gene058343.t1 MTR_8g041890 41.176 102 56 2 1 98 560 661 2.50e-19 81.3
MS.gene058343.t1 MTR_4g091860 36.000 100 61 1 2 98 737 836 2.53e-19 81.3
MS.gene058343.t1 MTR_3g020280 41.837 98 54 1 1 98 721 815 2.87e-19 81.3
MS.gene058343.t1 MTR_8g465410 43.878 98 51 1 1 98 724 817 4.71e-19 80.5
MS.gene058343.t1 MTR_6g012810 43.689 103 53 3 1 98 818 920 6.93e-19 80.1
MS.gene058343.t1 MTR_8g442270 48.571 70 35 1 1 69 696 765 1.36e-18 79.3
MS.gene058343.t1 MTR_2g011150 40.952 105 55 4 1 98 678 782 1.80e-18 79.0
MS.gene058343.t1 MTR_4g091850 42.857 98 56 0 1 98 750 847 1.84e-18 79.0
MS.gene058343.t1 MTR_4g091840 42.000 100 56 1 1 98 752 851 2.94e-18 78.6
MS.gene058343.t1 MTR_8g041880 42.157 102 55 3 1 98 559 660 3.25e-18 78.2
MS.gene058343.t1 MTR_3g011930 41.414 99 52 3 1 93 413 511 3.99e-18 77.8
MS.gene058343.t1 MTR_4g081665 50.000 74 36 1 1 73 714 787 5.31e-18 77.8
MS.gene058343.t1 MTR_1g052880 43.137 102 52 3 1 98 924 1023 5.98e-18 77.4
MS.gene058343.t1 MTR_8g041670 46.667 90 47 1 2 90 356 445 7.53e-18 77.0
MS.gene058343.t1 MTR_0148s0080 46.575 73 38 1 1 72 928 1000 1.55e-17 76.3
MS.gene058343.t1 MTR_4g081750 48.718 78 39 1 1 77 1061 1138 2.07e-17 75.9
MS.gene058343.t1 MTR_4g091760 40.000 100 58 1 1 98 747 846 2.98e-17 75.5
MS.gene058343.t1 MTR_8g465570 41.837 98 53 1 1 98 685 778 3.30e-17 75.5
MS.gene058343.t1 MTR_4g091690 41.000 100 57 1 1 98 758 857 3.95e-17 75.1
MS.gene058343.t1 MTR_8g465470 41.837 98 53 1 1 98 755 848 7.37e-17 74.3
MS.gene058343.t1 MTR_4g091730 40.000 100 58 1 1 98 686 785 8.01e-17 74.3
MS.gene058343.t1 MTR_1g105630 35.135 111 59 3 1 98 131 241 8.89e-17 72.8
MS.gene058343.t1 MTR_3g011960 39.048 105 56 4 1 98 160 263 1.16e-16 72.8
MS.gene058343.t1 MTR_5g005450 36.275 102 54 2 1 91 542 643 3.37e-16 72.4
MS.gene058343.t1 MTR_1g105655 36.697 109 58 3 1 98 561 669 3.58e-16 72.4
MS.gene058343.t1 MTR_8g442370 47.143 70 36 1 1 69 686 755 3.88e-16 72.4
MS.gene058343.t1 MTR_3g020320 37.374 99 58 2 1 98 721 816 1.13e-15 70.9
MS.gene058343.t1 MTR_4g091820 37.363 91 57 0 1 91 750 840 1.13e-15 71.2
MS.gene058343.t1 MTR_8g051540 44.286 70 38 1 1 69 698 767 1.91e-15 70.5
MS.gene058343.t1 MTR_2g011210 38.000 100 60 2 1 98 743 842 2.01e-15 70.5
MS.gene058343.t1 MTR_5g005520 39.604 101 58 2 1 98 570 670 2.28e-15 70.1
MS.gene058343.t1 MTR_8g442340 44.286 70 38 1 1 69 639 708 3.32e-15 69.7
MS.gene058343.t1 MTR_1g105640 39.726 73 43 1 1 72 553 625 4.95e-15 69.3
MS.gene058343.t1 MTR_1g105640 39.726 73 43 1 1 72 553 625 4.95e-15 69.3
MS.gene058343.t1 MTR_1g105640 39.726 73 43 1 1 72 553 625 5.10e-15 69.3
MS.gene058343.t1 MTR_1g105700 45.205 73 39 1 1 72 580 652 5.70e-15 68.9
MS.gene058343.t1 MTR_4g117020 36.893 103 60 2 1 98 664 766 6.26e-15 68.9
MS.gene058343.t1 MTR_8g442300 41.429 70 40 1 1 69 81 150 7.79e-15 66.2
MS.gene058343.t1 MTR_8g013620 46.250 80 42 1 1 79 683 762 9.34e-15 68.6
MS.gene058343.t1 MTR_8g013620 46.250 80 42 1 1 79 723 802 9.46e-15 68.6
MS.gene058343.t1 MTR_3g011910 38.144 97 56 2 1 93 544 640 1.43e-14 67.8
MS.gene058343.t1 MTR_4g091570 42.529 87 48 2 1 85 971 1057 1.82e-14 67.8
MS.gene058343.t1 MTR_4g117040 36.893 103 60 3 1 98 664 766 2.15e-14 67.4
MS.gene058343.t1 MTR_1g105710 45.205 73 39 1 1 72 568 640 2.22e-14 67.4
MS.gene058343.t1 MTR_7g056663 36.275 102 61 2 1 98 743 844 2.96e-14 67.0
MS.gene058343.t1 MTR_8g465150 40.196 102 57 2 1 98 733 834 3.05e-14 67.0
MS.gene058343.t1 MTR_1g104890 39.024 82 49 1 1 81 561 642 3.09e-14 67.0
MS.gene058343.t1 MTR_8g041650 42.157 102 54 3 2 98 554 655 3.86e-14 66.6
MS.gene058343.t1 MTR_8g051640 50.000 58 29 0 1 58 665 722 4.78e-14 66.2
MS.gene058343.t1 MTR_8g013610 42.718 103 54 3 1 98 724 826 5.25e-14 66.2
MS.gene058343.t1 MTR_2g011190 44.118 68 37 1 1 67 739 806 5.57e-14 66.2
MS.gene058343.t1 MTR_8g442310 42.857 70 39 1 1 69 652 721 7.00e-14 65.9
MS.gene058343.t1 MTR_8g013600 40.196 102 57 2 1 98 700 801 1.30e-13 65.1
MS.gene058343.t1 MTR_2g011240 36.190 105 50 4 1 98 720 814 1.72e-13 64.7
MS.gene058343.t1 MTR_8g465160 40.196 102 57 2 1 98 735 836 2.09e-13 64.7
MS.gene058343.t1 MTR_4g091780 43.478 69 39 0 1 69 741 809 2.57e-13 64.3
MS.gene058343.t1 MTR_4g091800 43.478 69 39 0 1 69 572 640 3.01e-13 64.3
MS.gene058343.t1 MTR_4g091770 45.161 62 34 0 2 63 50 111 3.23e-13 60.5
MS.gene058343.t1 MTR_8g013580 39.216 102 58 2 1 98 728 829 3.37e-13 63.9
MS.gene058343.t1 MTR_8g061110 37.255 102 60 3 1 98 623 724 5.29e-13 63.5
MS.gene058343.t1 MTR_5g005480 43.860 57 32 0 1 57 548 604 1.09e-12 62.4
MS.gene058343.t1 MTR_5g068220 33.636 110 54 3 1 91 44 153 1.43e-12 60.1
MS.gene058343.t1 MTR_7g056650 41.892 74 42 1 1 73 573 646 1.53e-12 62.0
MS.gene058343.t1 MTR_4g117030 33.981 103 63 2 1 98 625 727 1.86e-12 62.0
MS.gene058343.t1 MTR_2g011280 34.343 99 63 2 2 98 743 841 2.03e-12 61.6
MS.gene058343.t1 MTR_2g011270 34.343 99 63 2 2 98 723 821 2.04e-12 61.6
MS.gene058343.t1 MTR_6g463630 31.000 100 67 2 1 98 473 572 2.40e-12 61.6
MS.gene058343.t1 MTR_8g028065 34.247 73 47 1 1 72 788 860 2.75e-12 61.2
MS.gene058343.t1 MTR_1g021610 42.857 70 38 2 1 69 569 637 3.83e-12 60.8
MS.gene058343.t1 MTR_8g013560 40.777 103 56 3 1 98 726 828 3.89e-12 60.8
MS.gene058343.t1 MTR_0074s0060 36.986 73 45 1 1 72 528 600 4.17e-12 60.8
MS.gene058343.t1 MTR_7g056680 36.275 102 61 2 1 98 558 659 4.84e-12 60.8
MS.gene058343.t1 MTR_6g053000 36.986 73 45 1 1 72 557 629 4.94e-12 60.8
MS.gene058343.t1 MTR_7g056620 36.275 102 61 2 1 98 52 153 5.04e-12 58.5
MS.gene058343.t1 MTR_7g056680 36.275 102 61 2 1 98 714 815 5.05e-12 60.8
MS.gene058343.t1 MTR_7g056680 36.275 102 61 2 1 98 723 824 5.41e-12 60.5
MS.gene058343.t1 MTR_6g055960 35.616 73 46 1 1 72 814 886 5.44e-12 60.5
MS.gene058343.t1 MTR_7g056680 36.275 102 61 2 1 98 719 820 5.46e-12 60.5
MS.gene058343.t1 MTR_2g089290 37.838 74 45 1 1 73 891 964 5.52e-12 60.5
MS.gene058343.t1 MTR_0007s0020 36.986 73 45 1 1 72 792 864 5.56e-12 60.5
MS.gene058343.t1 MTR_7g056680 36.275 102 61 2 1 98 718 819 5.79e-12 60.5
MS.gene058343.t1 MTR_2g011340 36.250 80 50 1 2 80 739 818 5.85e-12 60.5
MS.gene058343.t1 MTR_7g056647 38.542 96 56 1 1 93 587 682 6.25e-12 60.5
MS.gene058343.t1 MTR_7g056647 38.542 96 56 1 1 93 749 844 6.27e-12 60.5
MS.gene058343.t1 MTR_5g068260 38.889 72 42 2 1 71 551 621 6.88e-12 60.1
MS.gene058343.t1 MTR_0341s0020 41.429 70 39 2 1 69 563 631 7.43e-12 60.1
MS.gene058343.t1 MTR_6g463700 29.091 110 66 2 1 98 760 869 8.41e-12 60.1
MS.gene058343.t1 MTR_6g057750 29.091 110 66 2 1 98 805 914 9.39e-12 60.1
MS.gene058343.t1 MTR_1g105835 38.571 70 41 2 1 69 255 323 1.12e-11 59.7
MS.gene058343.t1 MTR_3g079850 39.726 73 43 1 1 72 558 630 1.12e-11 59.7
MS.gene058343.t1 MTR_7g056430 37.500 104 58 3 1 98 1057 1159 1.18e-11 59.7
MS.gene058343.t1 MTR_6g463460 31.707 82 55 1 1 81 34 115 1.44e-11 57.8
MS.gene058343.t1 MTR_1g105600 32.258 93 61 2 1 92 817 908 1.47e-11 59.3
MS.gene058343.t1 MTR_1g021642 31.313 99 59 3 1 91 574 671 1.81e-11 58.9
MS.gene058343.t1 MTR_5g065130 41.667 72 40 2 1 71 558 628 1.84e-11 58.9
MS.gene058343.t1 MTR_1g105595 32.692 104 64 2 1 98 517 620 2.92e-11 58.5
MS.gene058343.t1 MTR_1g105595 32.692 104 64 2 1 98 564 667 3.08e-11 58.5
MS.gene058343.t1 MTR_7g056667 35.354 99 58 2 1 98 739 832 3.28e-11 58.5
MS.gene058343.t1 MTR_2g011230 34.653 101 62 4 1 98 733 832 3.41e-11 58.2
MS.gene058343.t1 MTR_6g057770 32.468 77 51 1 1 76 792 868 3.78e-11 58.2
MS.gene058343.t1 MTR_6g463710 32.468 77 51 1 1 76 792 868 3.82e-11 58.2
MS.gene058343.t1 MTR_7g056510 40.541 74 43 1 1 73 725 798 4.10e-11 58.2
MS.gene058343.t1 MTR_7g056640 37.255 102 60 2 1 98 734 835 5.45e-11 57.8
MS.gene058343.t1 MTR_5g005530 37.000 100 51 5 1 93 545 639 6.97e-11 57.4
MS.gene058343.t1 MTR_7g056623 41.096 73 42 1 1 72 692 764 7.17e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058343.t1 AT1G61490 42.857 98 56 0 1 98 557 654 1.79e-21 87.4
MS.gene058343.t1 AT1G61490 42.857 98 56 0 1 98 707 804 2.09e-21 87.4
MS.gene058343.t1 AT1G61490 42.857 98 56 0 1 98 707 804 2.09e-21 87.4
MS.gene058343.t1 AT1G61490 42.857 98 56 0 1 98 707 804 2.09e-21 87.4
MS.gene058343.t1 AT1G61490 42.857 98 56 0 1 98 707 804 2.09e-21 87.4
MS.gene058343.t1 AT1G61490 42.857 98 56 0 1 98 681 778 2.12e-21 87.4
MS.gene058343.t1 AT1G61490 42.857 98 56 0 1 98 681 778 2.12e-21 87.4
MS.gene058343.t1 AT1G65790 43.519 108 51 3 1 98 736 843 2.40e-21 87.4
MS.gene058343.t1 AT1G61430 41.837 98 57 0 1 98 683 780 7.59e-21 85.9
MS.gene058343.t1 AT1G61430 41.837 98 57 0 1 98 683 780 7.59e-21 85.9
MS.gene058343.t1 AT1G61430 41.837 98 57 0 1 98 683 780 7.59e-21 85.9
MS.gene058343.t1 AT1G61430 41.837 98 57 0 1 98 709 806 7.90e-21 85.9
MS.gene058343.t1 AT1G61430 41.837 98 57 0 1 98 706 803 8.22e-21 85.9
MS.gene058343.t1 AT1G11330 41.176 102 56 2 1 98 739 840 8.32e-21 85.9
MS.gene058343.t1 AT1G11330 41.176 102 56 2 1 98 741 842 8.65e-21 85.5
MS.gene058343.t1 AT1G61550 42.857 98 55 1 1 98 706 802 6.52e-20 83.2
MS.gene058343.t1 AT1G61400 39.796 98 59 0 1 98 717 814 9.44e-20 82.8
MS.gene058343.t1 AT1G61400 39.796 98 59 0 1 98 725 822 9.45e-20 82.8
MS.gene058343.t1 AT1G61390 41.414 99 55 2 1 98 567 663 1.59e-19 82.0
MS.gene058343.t1 AT1G61390 41.414 99 55 2 1 98 735 831 1.80e-19 82.0
MS.gene058343.t1 AT4G23280 38.462 104 57 2 2 98 513 616 3.80e-19 80.9
MS.gene058343.t1 AT4G23280 38.462 104 57 2 2 98 561 664 4.09e-19 80.9
MS.gene058343.t1 AT4G23280 38.462 104 57 2 2 98 563 666 4.34e-19 80.9
MS.gene058343.t1 AT4G21380 39.815 108 55 3 1 98 743 850 4.90e-19 80.9
MS.gene058343.t1 AT1G61440 40.816 98 58 0 1 98 700 797 5.65e-19 80.5
MS.gene058343.t1 AT1G61440 40.816 98 58 0 1 98 725 822 5.88e-19 80.5
MS.gene058343.t1 AT1G61440 40.816 98 58 0 1 98 695 792 6.04e-19 80.5
MS.gene058343.t1 AT1G65800 43.519 108 51 3 1 98 740 847 1.05e-18 79.7
MS.gene058343.t1 AT1G61370 39.796 98 58 1 1 98 567 663 1.87e-18 79.0
MS.gene058343.t1 AT1G61370 39.796 98 58 1 1 98 718 814 2.32e-18 79.0
MS.gene058343.t1 AT1G61460 40.816 98 57 1 1 98 653 749 3.00e-18 78.6
MS.gene058343.t1 AT1G61480 39.796 98 58 1 1 98 713 809 5.95e-18 77.4
MS.gene058343.t1 AT1G11350 41.176 102 56 2 1 98 729 830 6.57e-18 77.4
MS.gene058343.t1 AT1G61420 38.776 98 59 1 1 98 561 657 1.15e-17 76.6
MS.gene058343.t1 AT1G61420 38.776 98 59 1 1 98 563 659 1.20e-17 76.6
MS.gene058343.t1 AT1G61420 38.776 98 59 1 1 98 713 809 1.32e-17 76.6
MS.gene058343.t1 AT1G61420 38.776 98 59 1 1 98 713 809 1.32e-17 76.6
MS.gene058343.t1 AT1G61420 38.776 98 59 1 1 98 711 807 1.35e-17 76.6
MS.gene058343.t1 AT1G61500 42.857 98 55 1 1 98 708 804 1.62e-17 76.3
MS.gene058343.t1 AT1G61500 42.857 98 55 1 1 98 713 809 1.64e-17 76.3
MS.gene058343.t1 AT1G61500 42.857 98 55 1 1 98 690 786 1.77e-17 76.3
MS.gene058343.t1 AT4G11470 36.364 110 58 3 1 98 557 666 1.98e-17 76.3
MS.gene058343.t1 AT4G11470 36.364 110 58 3 1 98 562 671 2.04e-17 75.9
MS.gene058343.t1 AT4G11900 40.206 97 56 1 2 98 755 849 3.21e-17 75.5
MS.gene058343.t1 AT4G11900 40.206 97 56 1 2 98 686 780 3.39e-17 75.5
MS.gene058343.t1 AT3G45860 37.500 96 59 1 2 96 571 666 3.70e-17 75.5
MS.gene058343.t1 AT4G23240 38.739 111 54 4 1 98 246 355 4.91e-17 74.7
MS.gene058343.t1 AT4G23260 38.835 103 58 3 1 98 557 659 7.52e-17 74.3
MS.gene058343.t1 AT4G23260 38.835 103 58 3 1 98 546 648 8.12e-17 74.3
MS.gene058343.t1 AT4G11530 41.000 100 50 4 1 91 570 669 8.30e-17 74.3
MS.gene058343.t1 AT4G23240 38.739 111 54 4 1 98 553 662 9.50e-17 74.3
MS.gene058343.t1 AT4G23150 36.449 107 59 3 1 98 553 659 1.11e-16 73.9
MS.gene058343.t1 AT4G23270 44.444 72 39 1 2 72 545 616 1.60e-16 73.6
MS.gene058343.t1 AT4G23270 44.444 72 39 1 2 72 545 616 1.60e-16 73.6
MS.gene058343.t1 AT4G23270 44.444 72 39 1 2 72 545 616 1.73e-16 73.6
MS.gene058343.t1 AT4G23310 43.056 72 40 1 2 72 687 758 1.83e-16 73.2
MS.gene058343.t1 AT4G23310 43.056 72 40 1 2 72 727 798 2.06e-16 73.2
MS.gene058343.t1 AT4G23200 33.962 106 62 2 1 98 554 659 3.33e-16 72.8
MS.gene058343.t1 AT4G03230 43.269 104 53 3 1 98 807 910 3.43e-16 72.4
MS.gene058343.t1 AT4G03230 43.269 104 53 3 1 98 807 910 3.43e-16 72.4
MS.gene058343.t1 AT4G03230 43.269 104 53 3 1 98 750 853 3.59e-16 72.4
MS.gene058343.t1 AT4G03230 43.269 104 53 3 1 98 742 845 3.63e-16 72.4
MS.gene058343.t1 AT4G03230 43.269 104 53 3 1 98 835 938 3.83e-16 72.4
MS.gene058343.t1 AT4G03230 43.269 104 53 3 1 98 749 852 3.88e-16 72.4
MS.gene058343.t1 AT4G03230 43.269 104 53 3 1 98 907 1010 4.11e-16 72.4
MS.gene058343.t1 AT4G03230 43.269 104 53 3 1 98 907 1010 4.11e-16 72.4
MS.gene058343.t1 AT4G23210 42.045 88 48 2 2 88 574 659 4.93e-16 72.0
MS.gene058343.t1 AT4G23130 41.667 72 41 1 2 72 559 630 4.97e-16 72.0
MS.gene058343.t1 AT4G23130 41.667 72 41 1 2 72 563 634 5.17e-16 72.0
MS.gene058343.t1 AT4G11480 34.545 110 60 3 1 98 539 648 9.53e-16 71.2
MS.gene058343.t1 AT4G11480 34.545 110 60 3 1 98 542 651 9.81e-16 71.2
MS.gene058343.t1 AT4G11480 34.545 110 60 3 1 98 547 656 1.03e-15 71.2
MS.gene058343.t1 AT4G23290 42.667 75 42 1 2 75 539 613 1.21e-15 70.9
MS.gene058343.t1 AT4G23290 42.667 75 42 1 2 75 582 656 1.36e-15 70.9
MS.gene058343.t1 AT1G61380 39.000 100 58 2 2 98 559 658 1.80e-15 70.5
MS.gene058343.t1 AT4G23320 43.836 73 40 1 1 72 401 473 1.82e-15 70.5
MS.gene058343.t1 AT4G23320 43.836 73 40 1 1 72 401 473 1.82e-15 70.5
MS.gene058343.t1 AT4G23220 33.333 105 63 2 1 98 554 658 1.83e-15 70.5
MS.gene058343.t1 AT1G61380 39.000 100 58 2 2 98 706 805 1.84e-15 70.5
MS.gene058343.t1 AT4G23320 43.836 73 40 1 1 72 422 494 1.92e-15 70.5
MS.gene058343.t1 AT4G23300 41.096 73 42 1 1 72 573 645 3.13e-15 69.7
MS.gene058343.t1 AT4G11460 42.169 83 44 2 1 82 564 643 3.70e-15 69.7
MS.gene058343.t1 AT4G11460 42.683 82 43 2 2 82 568 646 3.78e-15 69.7
MS.gene058343.t1 AT4G23140 38.043 92 50 2 1 85 574 665 3.92e-15 69.7
MS.gene058343.t1 AT4G23140 38.043 92 50 2 1 85 568 659 4.07e-15 69.3
MS.gene058343.t1 AT4G11460 42.683 82 43 2 2 82 490 568 4.38e-15 69.3
MS.gene058343.t1 AT1G11340 38.835 103 57 4 2 98 731 833 6.46e-15 68.9
MS.gene058343.t1 AT1G61610 39.423 104 55 3 1 98 741 842 8.57e-15 68.6
MS.gene058343.t1 AT4G21390 38.095 105 58 3 1 98 745 849 1.05e-14 68.2
MS.gene058343.t1 AT4G23160 41.667 72 41 1 2 72 577 648 1.95e-14 67.4
MS.gene058343.t1 AT1G11280 37.000 100 60 2 1 98 732 830 6.30e-14 66.2
MS.gene058343.t1 AT1G11280 37.000 100 60 2 1 98 722 820 6.36e-14 66.2
MS.gene058343.t1 AT1G11280 37.000 100 60 2 1 98 710 808 6.42e-14 66.2
MS.gene058343.t1 AT1G11300 36.634 101 60 2 2 98 705 805 6.61e-14 66.2
MS.gene058343.t1 AT1G11280 37.000 100 60 2 1 98 720 818 6.68e-14 66.2
MS.gene058343.t1 AT1G11300 36.634 101 60 2 2 98 720 820 6.94e-14 65.9
MS.gene058343.t1 AT4G23230 41.096 73 42 1 1 72 554 626 7.67e-14 65.9
MS.gene058343.t1 AT4G23180 38.356 73 44 1 1 72 565 637 8.17e-14 65.9
MS.gene058343.t1 AT4G21230 33.663 101 57 2 1 98 549 642 2.47e-13 64.3
MS.gene058343.t1 AT1G11410 34.579 107 60 4 2 98 746 852 2.64e-13 64.3
MS.gene058343.t1 AT1G11410 34.579 107 60 4 2 98 715 821 2.69e-13 64.3
MS.gene058343.t1 AT1G11410 34.579 107 60 4 2 98 624 730 2.72e-13 64.3
MS.gene058343.t1 AT1G11410 34.579 107 60 4 2 98 739 845 2.77e-13 64.3
MS.gene058343.t1 AT1G11303 33.663 101 63 2 2 98 720 820 3.71e-13 63.9
MS.gene058343.t1 AT4G11490 40.000 70 41 1 1 69 539 608 3.75e-13 63.9
MS.gene058343.t1 AT4G05200 37.500 72 44 1 2 72 565 636 3.84e-13 63.9
MS.gene058343.t1 AT4G05200 37.500 72 44 1 2 72 583 654 3.85e-13 63.9
MS.gene058343.t1 AT4G00970 34.906 106 56 4 2 98 564 665 4.40e-13 63.5
MS.gene058343.t1 AT4G27300 36.000 100 61 2 1 98 717 815 8.65e-13 62.8
MS.gene058343.t1 AT4G00960 34.286 105 62 4 1 98 181 285 9.70e-13 62.4
MS.gene058343.t1 AT4G00960 34.286 105 62 4 1 98 188 292 1.21e-12 62.0
MS.gene058343.t1 AT4G23250 39.726 73 43 1 1 72 572 644 1.32e-12 62.4
MS.gene058343.t1 AT4G23250 39.726 73 43 1 1 72 577 649 1.38e-12 62.4
MS.gene058343.t1 AT4G23250 40.278 72 42 1 2 72 573 644 1.44e-12 62.4
MS.gene058343.t1 AT4G00960 34.286 105 62 4 1 98 275 379 1.63e-12 62.0
MS.gene058343.t1 AT4G23190 40.845 71 41 1 1 70 570 640 1.97e-12 62.0
MS.gene058343.t1 AT4G23190 40.845 71 41 1 1 70 492 562 2.35e-12 61.6
MS.gene058343.t1 AT4G23190 40.845 71 41 1 1 70 492 562 2.35e-12 61.6
MS.gene058343.t1 AT1G67520 44.444 72 37 2 1 69 506 577 2.50e-12 61.6
MS.gene058343.t1 AT1G67520 44.444 72 37 2 1 69 506 577 2.50e-12 61.6
MS.gene058343.t1 AT1G67520 44.444 72 37 2 1 69 477 548 2.64e-12 61.6
MS.gene058343.t1 AT4G27290 39.216 102 58 2 1 98 728 829 3.07e-12 61.2
MS.gene058343.t1 AT3G16030 43.056 72 38 2 1 69 622 693 3.10e-12 61.2
MS.gene058343.t1 AT4G38830 42.466 73 39 2 1 70 562 634 3.21e-12 61.2
MS.gene058343.t1 AT3G16030 43.056 72 38 2 1 69 745 816 3.26e-12 61.2
MS.gene058343.t1 AT1G67520 44.444 72 37 2 1 69 671 742 3.27e-12 61.2
MS.gene058343.t1 AT4G27290 39.216 102 58 2 1 98 682 783 3.37e-12 61.2
MS.gene058343.t1 AT1G67520 44.444 72 37 2 1 69 714 785 3.41e-12 61.2
MS.gene058343.t1 AT1G67520 44.444 72 37 2 1 69 721 792 3.45e-12 61.2
MS.gene058343.t1 AT3G16030 43.056 72 38 2 1 69 766 837 3.53e-12 61.2
MS.gene058343.t1 AT4G21400 38.235 102 57 4 2 98 573 673 5.36e-11 57.8
MS.gene058343.t1 AT4G21400 38.235 102 57 4 2 98 472 572 6.49e-11 57.4
MS.gene058343.t1 AT4G21400 38.235 102 57 4 2 98 571 671 6.97e-11 57.4
MS.gene058343.t1 AT4G04540 42.308 78 43 2 1 77 566 642 7.03e-11 57.4
MS.gene058343.t1 AT4G21400 38.235 102 57 4 2 98 583 683 7.33e-11 57.4
MS.gene058343.t1 AT4G04540 42.308 78 43 2 1 77 537 613 8.11e-11 57.4

Find 20 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATATTTGGTCTATCATT+TGG 0.282857 3.2:-2212339 None:intergenic
GCAAGCACATAGGTCATATT+TGG 0.288899 3.2:-2212351 None:intergenic
GACCCTTTGTATTATGAAAC+CGG 0.375389 3.2:-2212415 None:intergenic
TGAAACCGGGTTCCTTTGGT+TGG 0.420442 3.2:-2212401 None:intergenic
ATTATGAAACCGGGTTCCTT+TGG 0.425607 3.2:-2212405 None:intergenic
GTAACCTCATTGATTGAGAA+AGG 0.438119 3.2:-2212465 None:intergenic
GAAACCGGGTTCCTTTGGTT+GGG 0.444496 3.2:-2212400 None:intergenic
ATTAATTGATGATTGTCTAA+AGG 0.463986 3.2:+2212251 MS.gene058343:CDS
GCTTTAAGATGCATACAAGT+TGG 0.497993 3.2:+2212294 MS.gene058343:CDS
GGCTTGGAAGTTATGGAAAG+AGG 0.509194 3.2:+2212215 None:intergenic
AATACAAAGGGTCTCTAATG+AGG 0.512583 3.2:+2212425 MS.gene058343:CDS
GCTTGGAAGTTATGGAAAGA+GGG 0.540214 3.2:+2212216 MS.gene058343:CDS
ATGCATCTTAAAGCTTCAGA+TGG 0.561976 3.2:-2212285 None:intergenic
TGTCAACATTGCAAGCACAT+AGG 0.564473 3.2:-2212361 None:intergenic
ACCCTTTGTATTATGAAACC+GGG 0.566683 3.2:-2212414 None:intergenic
ACCCGGTTTCATAATACAAA+GGG 0.567879 3.2:+2212413 MS.gene058343:CDS
ATACAAAGGGTCTCTAATGA+GGG 0.576122 3.2:+2212426 MS.gene058343:CDS
TTAGCCCAACCAAAGGAACC+CGG 0.600148 3.2:+2212396 MS.gene058343:CDS
AACCCGGTTTCATAATACAA+AGG 0.611216 3.2:+2212412 MS.gene058343:CDS
GAAGCCTTTCTCAATCAATG+AGG 0.630739 3.2:+2212461 MS.gene058343:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTGATGATTGTCTAA+AGG + chr3.2:2212251-2212270 MS.gene058343:CDS 20.0%
GTCATATTTGGTCTATCATT+TGG - chr3.2:2212342-2212361 None:intergenic 30.0%
AACCCGGTTTCATAATACAA+AGG + chr3.2:2212412-2212431 MS.gene058343:CDS 35.0%
AATACAAAGGGTCTCTAATG+AGG + chr3.2:2212425-2212444 MS.gene058343:CDS 35.0%
ACCCGGTTTCATAATACAAA+GGG + chr3.2:2212413-2212432 MS.gene058343:CDS 35.0%
ACCCTTTGTATTATGAAACC+GGG - chr3.2:2212417-2212436 None:intergenic 35.0%
ATACAAAGGGTCTCTAATGA+GGG + chr3.2:2212426-2212445 MS.gene058343:CDS 35.0%
ATGCATCTTAAAGCTTCAGA+TGG - chr3.2:2212288-2212307 None:intergenic 35.0%
GACCCTTTGTATTATGAAAC+CGG - chr3.2:2212418-2212437 None:intergenic 35.0%
! GTAACCTCATTGATTGAGAA+AGG - chr3.2:2212468-2212487 None:intergenic 35.0%
!! GCTTTAAGATGCATACAAGT+TGG + chr3.2:2212294-2212313 MS.gene058343:CDS 35.0%
!!! AACTATTTTAGCCCAACCAA+AGG + chr3.2:2212389-2212408 MS.gene058343:CDS 35.0%
ATTATGAAACCGGGTTCCTT+TGG - chr3.2:2212408-2212427 None:intergenic 40.0%
GAAGCCTTTCTCAATCAATG+AGG + chr3.2:2212461-2212480 MS.gene058343:CDS 40.0%
GCAAGCACATAGGTCATATT+TGG - chr3.2:2212354-2212373 None:intergenic 40.0%
GCTTGGAAGTTATGGAAAGA+GGG + chr3.2:2212216-2212235 MS.gene058343:CDS 40.0%
TGTCAACATTGCAAGCACAT+AGG - chr3.2:2212364-2212383 None:intergenic 40.0%
GAAACCGGGTTCCTTTGGTT+GGG - chr3.2:2212403-2212422 None:intergenic 50.0%
TGAAACCGGGTTCCTTTGGT+TGG - chr3.2:2212404-2212423 None:intergenic 50.0%
TTAGCCCAACCAAAGGAACC+CGG + chr3.2:2212396-2212415 MS.gene058343:CDS 50.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 2212216 2212512 2212216 ID=MS.gene058343
chr3.2 mRNA 2212216 2212512 2212216 ID=MS.gene058343.t1;Parent=MS.gene058343
chr3.2 exon 2212216 2212512 2212216 ID=MS.gene058343.t1.exon1;Parent=MS.gene058343.t1
chr3.2 CDS 2212216 2212512 2212216 ID=cds.MS.gene058343.t1;Parent=MS.gene058343.t1
Gene Sequence

>MS.gene058343

GCTTGGAAGTTATGGAAAGAGGGAAATTCAGAAGAATTAATTGATGATTGTCTAAAGGACTCATATATTCCATCTGAAGCTTTAAGATGCATACAAGTTGGTCTTCTATGTCTACAACTTCATCCAAATGATAGACCAAATATGACCTATGTGCTTGCAATGTTGACAAATGAAACTATTTTAGCCCAACCAAAGGAACCCGGTTTCATAATACAAAGGGTCTCTAATGAGGGAGAATCTACAACGAAGCCTTTCTCAATCAATGAGGTTACTACTTCGTTAATAGATGCTAGATGA
Protein sequence

>MS.gene058343.t1

AWKLWKEGNSEELIDDCLKDSYIPSEALRCIQVGLLCLQLHPNDRPNMTYVLAMLTNETILAQPKEPGFIIQRVSNEGESTTKPFSINEVTTSLIDAR