AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 115 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGATACCACACTTCTTTC+TGG 0.139181 7.2:-27247229 None:intergenic
TTATGTTCGGAATGGAATTT+TGG 0.142033 7.2:+27246952 MS.gene058510:CDS
AATCTCTTGTTGCCATTTCT+TGG 0.191404 7.2:-27247934 None:intergenic
CGCATCCGGATTAGCATTTC+AGG 0.193504 7.2:+27247849 MS.gene058510:intron
TCCTATAACACATTGATTTC+CGG 0.231046 7.2:+27247962 MS.gene058510:CDS
CCCTGATAGCATTGCATTCC+AGG 0.265935 7.2:-27247248 None:intergenic
GCTGTCCTGACAAAATAATT+TGG 0.284608 7.2:-27247451 None:intergenic
GGAGCACCACCCAGTGGTTT+TGG 0.293456 7.2:-27246650 None:intergenic
ACTTGGACCACCATGATTAC+TGG 0.299110 7.2:+27247154 MS.gene058510:CDS
TCCTGGAATGCAATGCTATC+AGG 0.303261 7.2:+27247247 MS.gene058510:CDS
CCCGGAAATCAATGTGTTAT+AGG 0.303365 7.2:-27247963 None:intergenic
TTGGGCATATATGCCAAGTA+TGG 0.305661 7.2:+27246971 MS.gene058510:CDS
AACAATCTTATAGTTTCTTC+TGG 0.313981 7.2:-27247289 None:intergenic
CCTATAACACATTGATTTCC+GGG 0.330411 7.2:+27247963 MS.gene058510:CDS
ATATCTTCTTGTTCATCTCT+TGG 0.332878 7.2:+27247370 MS.gene058510:CDS
ATTGCTGGTTATACTCAAAA+TGG 0.334829 7.2:+27247673 MS.gene058510:CDS
ATGCAGTCATGCAGGATTAT+TGG 0.336414 7.2:+27248090 MS.gene058510:CDS
TGCGTTAATATTCCAAGAAA+TGG 0.375200 7.2:+27247922 MS.gene058510:CDS
TTTGCTTACAATGTTTGTAT+TGG 0.385916 7.2:-27246565 None:intergenic
ATGTGATGATCTCTGGATAC+TGG 0.402648 7.2:+27247056 MS.gene058510:CDS
GTTACCCATGTTGTTTCGTC+TGG 0.403040 7.2:-27247343 None:intergenic
CAATCTGCAATGGTTCTATC+AGG 0.406375 7.2:-27247031 None:intergenic
TCTTGCTCATGTATTGAAAC+GGG 0.415056 7.2:+27246914 MS.gene058510:CDS
TTCAATGACATGCTTAGCTC+TGG 0.418179 7.2:+27247310 MS.gene058510:CDS
CTGCCTGCTCACCCATCATA+TGG 0.418957 7.2:-27247114 None:intergenic
CTGTCCTGACAAAATAATTT+GGG 0.423418 7.2:-27247450 None:intergenic
CCCTGGACCACCAAAACCAC+TGG 0.439997 7.2:+27246640 MS.gene058510:CDS
TTCTTGCTCATGTATTGAAA+CGG 0.441555 7.2:+27246913 MS.gene058510:CDS
AAAACCAGATGAGGTGACTA+TGG 0.446613 7.2:+27247750 MS.gene058510:CDS
AGATTCCATTGTCAGAAAGC+TGG 0.450082 7.2:+27247408 MS.gene058510:CDS
TGCAAGGAAGCGCGTACATT+GGG 0.450743 7.2:-27246679 None:intergenic
CTCACCATAGTCACCTCATC+TGG 0.452448 7.2:-27247754 None:intergenic
TCATGGAATTCGATGATTGC+TGG 0.453892 7.2:+27247658 MS.gene058510:CDS
GATTGGAATGTGATGATCTC+TGG 0.455038 7.2:+27247049 MS.gene058510:CDS
AAGCTCAATCGGTCCATACT+TGG 0.461168 7.2:-27246984 None:intergenic
CAGAAAGAAGTGTGGTATCC+TGG 0.462894 7.2:+27247230 MS.gene058510:CDS
CCCATGTTGTTTCGTCTGGT+TGG 0.465537 7.2:-27247339 None:intergenic
CAAGGCGATCAGGCTGTTTG+AGG 0.469000 7.2:+27247705 MS.gene058510:CDS
TTTCCATATGATGGGTGAGC+AGG 0.469864 7.2:+27247111 MS.gene058510:CDS
GCGAGTCATTCAAGGCGATC+AGG 0.470855 7.2:+27247695 MS.gene058510:CDS
TTTGGTGGTCCAGGGAGTGG+TGG 0.472976 7.2:-27246632 None:intergenic
ACAATGTTTGTATTGGTCAA+TGG 0.473526 7.2:-27246558 None:intergenic
AATTGGGTGTGTACAAGTAT+AGG 0.473630 7.2:+27247533 MS.gene058510:CDS
TAAGTAAGAATGTTATTACT+TGG 0.474742 7.2:+27247137 MS.gene058510:CDS
GCAATATAAGTTATGCGGTC+TGG 0.477121 7.2:-27248055 None:intergenic
CTTTGCATACCCAGTAATCA+TGG 0.489807 7.2:-27247164 None:intergenic
TTGTCTCAGACGATGGAGAT+TGG 0.490095 7.2:-27246592 None:intergenic
CTTGGACCACCATGATTACT+GGG 0.491011 7.2:+27247155 MS.gene058510:CDS
ATGCCCATGCTCTGCAAACC+CGG 0.492197 7.2:-27247981 None:intergenic
TCAAAATGGCGAGTCATTCA+AGG 0.493336 7.2:+27247687 MS.gene058510:CDS
ATGATCATGATCATTATGTT+CGG 0.499788 7.2:+27246939 MS.gene058510:CDS
ATTTCTGCATATGCAAGAGC+AGG 0.503937 7.2:+27247580 MS.gene058510:CDS
AAGAGCAGGGGATTTACATT+CGG 0.503965 7.2:+27247594 MS.gene058510:CDS
TTACTGGGTATGCAAAGAAC+GGG 0.507410 7.2:+27247170 MS.gene058510:CDS
TATACTTGTACACACCCAAT+TGG 0.508157 7.2:-27247531 None:intergenic
CTGATAGAACCATTGCAGAT+TGG 0.517518 7.2:+27247032 MS.gene058510:CDS
AGTTTCCTAGCAAGCTCAAT+CGG 0.519044 7.2:-27246995 None:intergenic
GTCGTCCAGCTTTCTGACAA+TGG 0.520515 7.2:-27247413 None:intergenic
CAGAAAGCTGGACGACAGAG+TGG 0.520886 7.2:+27247420 MS.gene058510:CDS
ATGGACCGATTGAGCTTGCT+AGG 0.527946 7.2:+27246990 MS.gene058510:CDS
CATGATCATTATGTTCGGAA+TGG 0.528944 7.2:+27246944 MS.gene058510:CDS
ATTTCCGGGTTTGCAGAGCA+TGG 0.529477 7.2:+27247977 MS.gene058510:CDS
TTTCCGGGTTTGCAGAGCAT+GGG 0.530985 7.2:+27247978 MS.gene058510:CDS
AAATCTTGTGTGCTGCCTCA+AGG 0.534437 7.2:-27247504 None:intergenic
GGGTTTGCAGAGCATGGGCA+TGG 0.535259 7.2:+27247983 MS.gene058510:CDS
CATGGAGTTGTCTCAGACGA+TGG 0.535647 7.2:-27246599 None:intergenic
AGTATAGGAGTTCTGTTCCA+TGG 0.537705 7.2:+27247548 MS.gene058510:CDS
GCAGAAATCATGGCATTCCA+TGG 0.540687 7.2:-27247565 None:intergenic
GTGCAAGGAAGCGCGTACAT+TGG 0.540822 7.2:-27246680 None:intergenic
CTAACTGCATGCAGTCATGC+AGG 0.541676 7.2:+27248082 MS.gene058510:CDS
CCTGGAATGCAATGCTATCA+GGG 0.542295 7.2:+27247248 MS.gene058510:CDS
TCTTGCATATGCAGAAATCA+TGG 0.546459 7.2:-27247575 None:intergenic
TGCTATCAGGGTATGCTCAA+GGG 0.548190 7.2:+27247260 MS.gene058510:CDS
ATTTACATGTACTCAAGATG+TGG 0.555360 7.2:+27247885 MS.gene058510:CDS
TGCAGAGCATGGGCATGGAA+TGG 0.556678 7.2:+27247988 MS.gene058510:CDS
AGGTGTAGCTTGAGGGTGCA+AGG 0.558873 7.2:-27246695 None:intergenic
ATGCTATCAGGGTATGCTCA+AGG 0.559533 7.2:+27247259 MS.gene058510:CDS
TCTCTGGATACTGGAAATGC+AGG 0.562011 7.2:+27247065 MS.gene058510:CDS
GGAAGCGCGTACATTGGGTA+AGG 0.574355 7.2:-27246674 None:intergenic
CATGCAGGATTATTGGAAGA+AGG 0.577698 7.2:+27248097 MS.gene058510:CDS
GCTATCAGGGTATGCTCAAG+GGG 0.578174 7.2:+27247261 MS.gene058510:CDS
ATGTGGCAGGTGTAGCTTGA+GGG 0.584724 7.2:-27246702 None:intergenic
ACAGTTGGTCCACCACTCCC+TGG 0.585492 7.2:+27246623 MS.gene058510:CDS
TCCAACCAGACGAAACAACA+TGG 0.589118 7.2:+27247338 MS.gene058510:CDS
ATTACTGGGTATGCAAAGAA+CGG 0.593734 7.2:+27247169 MS.gene058510:CDS
CCTGGACCACCAAAACCACT+GGG 0.594797 7.2:+27246641 MS.gene058510:CDS
AGCGCGTACATTGGGTAAGG+AGG 0.600693 7.2:-27246671 None:intergenic
CTTGATATGCATGCAAAATG+TGG 0.602958 7.2:+27247478 MS.gene058510:CDS
CATCACATTCCAATCTGCAA+TGG 0.603020 7.2:-27247041 None:intergenic
CTGGAAATGCAGGAATGAAG+AGG 0.606162 7.2:+27247075 MS.gene058510:CDS
AGTGGTGGACCAACTGTGCA+TGG 0.606538 7.2:-27246617 None:intergenic
TGAAGATTCAAAACCAGATG+AGG 0.612897 7.2:+27247741 MS.gene058510:CDS
TCCTGACAAAATAATTTGGG+CGG 0.624003 7.2:-27247447 None:intergenic
CACAGCGAGATACTGTCTCA+TGG 0.626960 7.2:+27247641 MS.gene058510:CDS
TTGATATGCATGCAAAATGT+GGG 0.630100 7.2:+27247479 MS.gene058510:CDS
TTTCTGCATATGCAAGAGCA+GGG 0.635904 7.2:+27247581 MS.gene058510:CDS
ACGGGAATTTGAAGACCGCA+AGG 0.638632 7.2:+27247188 MS.gene058510:CDS
TTCTGCATATGCAAGAGCAG+GGG 0.639093 7.2:+27247582 MS.gene058510:CDS
GAGACAACTCCATGCACAGT+TGG 0.648518 7.2:+27246608 MS.gene058510:CDS
CAATGGAATCTGAAAGACAA+GGG 0.651124 7.2:-27247396 None:intergenic
GTTGAATTGCGACTTGACAG+TGG 0.654855 7.2:+27246528 None:intergenic
AGAAAGCTGGACGACAGAGT+GGG 0.656608 7.2:+27247421 MS.gene058510:CDS
GCTGTGGCATCTTATCAAAG+AGG 0.675353 7.2:-27247624 None:intergenic
CAAAATGCCAGAAAGAAGTG+TGG 0.676476 7.2:+27247222 MS.gene058510:CDS
GTATAGCAATATAAGTTATG+CGG 0.681912 7.2:-27248060 None:intergenic
TGCAAAATGTGGGAACCTTG+AGG 0.688675 7.2:+27247489 MS.gene058510:CDS
CCAACCAGACGAAACAACAT+GGG 0.694059 7.2:+27247339 MS.gene058510:CDS
ACAATGGAATCTGAAAGACA+AGG 0.709733 7.2:-27247397 None:intergenic
GGACCACCAAAACCACTGGG+TGG 0.709882 7.2:+27246644 MS.gene058510:CDS
CATGAGACAGTATCTCGCTG+TGG 0.718326 7.2:-27247640 None:intergenic
TGCATACCCAGTAATCATGG+TGG 0.721201 7.2:-27247161 None:intergenic
TAAGGAGGAGCACCACCCAG+TGG 0.722549 7.2:-27246656 None:intergenic
AATGTGGCAGGTGTAGCTTG+AGG 0.731834 7.2:-27246703 None:intergenic
TTTGTCAAAATACATCCTTG+CGG 0.737033 7.2:-27247203 None:intergenic
CTATCAGGGTATGCTCAAGG+GGG 0.764505 7.2:+27247262 MS.gene058510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGTAAGAATGTTATTACT+TGG + chr7.2:27247137-27247156 MS.gene058510:CDS 20.0%
! AACAATCTTATAGTTTCTTC+TGG - chr7.2:27247292-27247311 None:intergenic 25.0%
! ATGATCATGATCATTATGTT+CGG + chr7.2:27246939-27246958 MS.gene058510:CDS 25.0%
! CTCAAATACTATTCTCAAAT+TGG + chr7.2:27246771-27246790 MS.gene058510:intron 25.0%
! GTATAGCAATATAAGTTATG+CGG - chr7.2:27248063-27248082 None:intergenic 25.0%
! TTGTCAAAAATGAAAGAAGA+CGG + chr7.2:27248025-27248044 MS.gene058510:CDS 25.0%
! TTTGCTTACAATGTTTGTAT+TGG - chr7.2:27246568-27246587 None:intergenic 25.0%
AGAATAGTATTTGAGCATAC+AGG - chr7.2:27246766-27246785 None:intergenic 30.0%
AGCCAAATAGAAAGATGTAT+CGG - chr7.2:27246859-27246878 None:intergenic 30.0%
ATATCTTCTTGTTCATCTCT+TGG + chr7.2:27247370-27247389 MS.gene058510:CDS 30.0%
ATTTACATGTACTCAAGATG+TGG + chr7.2:27247885-27247904 MS.gene058510:CDS 30.0%
CTGTCCTGACAAAATAATTT+GGG - chr7.2:27247453-27247472 None:intergenic 30.0%
TGCGTTAATATTCCAAGAAA+TGG + chr7.2:27247922-27247941 MS.gene058510:CDS 30.0%
TTCTTGCTCATGTATTGAAA+CGG + chr7.2:27246913-27246932 MS.gene058510:CDS 30.0%
TTGATATGCATGCAAAATGT+GGG + chr7.2:27247479-27247498 MS.gene058510:CDS 30.0%
TTTGTCAAAATACATCCTTG+CGG - chr7.2:27247206-27247225 None:intergenic 30.0%
! AAGTAAGCTTTTCCATATGA+TGG + chr7.2:27247102-27247121 MS.gene058510:CDS 30.0%
! ACAATGTTTGTATTGGTCAA+TGG - chr7.2:27246561-27246580 None:intergenic 30.0%
! ACACAAGATTTTTGACCAAT+TGG + chr7.2:27247516-27247535 MS.gene058510:CDS 30.0%
! AGTAAGCTTTTCCATATGAT+GGG + chr7.2:27247103-27247122 MS.gene058510:CDS 30.0%
! ATTGCTGGTTATACTCAAAA+TGG + chr7.2:27247673-27247692 MS.gene058510:CDS 30.0%
! CACAAGATTTTTGACCAATT+GGG + chr7.2:27247517-27247536 MS.gene058510:CDS 30.0%
! TATGTTCGGAATGGAATTTT+GGG + chr7.2:27246953-27246972 MS.gene058510:CDS 30.0%
! TTATGTTCGGAATGGAATTT+TGG + chr7.2:27246952-27246971 MS.gene058510:CDS 30.0%
!! TCCTATAACACATTGATTTC+CGG + chr7.2:27247962-27247981 MS.gene058510:CDS 30.0%
AATTGGGTGTGTACAAGTAT+AGG + chr7.2:27247533-27247552 MS.gene058510:CDS 35.0%
ACAATGGAATCTGAAAGACA+AGG - chr7.2:27247400-27247419 None:intergenic 35.0%
AGAACTAGGTTTGGGTAATT+GGG + chr7.2:27247803-27247822 MS.gene058510:intron 35.0%
ATTACTGGGTATGCAAAGAA+CGG + chr7.2:27247169-27247188 MS.gene058510:CDS 35.0%
CAATGGAATCTGAAAGACAA+GGG - chr7.2:27247399-27247418 None:intergenic 35.0%
CATGATCATTATGTTCGGAA+TGG + chr7.2:27246944-27246963 MS.gene058510:CDS 35.0%
CTTGATATGCATGCAAAATG+TGG + chr7.2:27247478-27247497 MS.gene058510:CDS 35.0%
GCCAAATAGAAAGATGTATC+GGG - chr7.2:27246858-27246877 None:intergenic 35.0%
GCTGTCCTGACAAAATAATT+TGG - chr7.2:27247454-27247473 None:intergenic 35.0%
TATACTTGTACACACCCAAT+TGG - chr7.2:27247534-27247553 None:intergenic 35.0%
TCCTGACAAAATAATTTGGG+CGG - chr7.2:27247450-27247469 None:intergenic 35.0%
TCTTGCATATGCAGAAATCA+TGG - chr7.2:27247578-27247597 None:intergenic 35.0%
TCTTGCTCATGTATTGAAAC+GGG + chr7.2:27246914-27246933 MS.gene058510:CDS 35.0%
TGAAGATTCAAAACCAGATG+AGG + chr7.2:27247741-27247760 MS.gene058510:CDS 35.0%
TGTATCCTGAAATGCTAATC+CGG - chr7.2:27247857-27247876 None:intergenic 35.0%
! AATCTCTTGTTGCCATTTCT+TGG - chr7.2:27247937-27247956 None:intergenic 35.0%
!! CCTATAACACATTGATTTCC+GGG + chr7.2:27247963-27247982 MS.gene058510:CDS 35.0%
AAAACCAGATGAGGTGACTA+TGG + chr7.2:27247750-27247769 MS.gene058510:CDS 40.0%
AAGAGCAGGGGATTTACATT+CGG + chr7.2:27247594-27247613 MS.gene058510:CDS 40.0%
AGATTCCATTGTCAGAAAGC+TGG + chr7.2:27247408-27247427 MS.gene058510:CDS 40.0%
AGTATAGGAGTTCTGTTCCA+TGG + chr7.2:27247548-27247567 MS.gene058510:CDS 40.0%
AGTTTCCTAGCAAGCTCAAT+CGG - chr7.2:27246998-27247017 None:intergenic 40.0%
ATGCAGTCATGCAGGATTAT+TGG + chr7.2:27248090-27248109 MS.gene058510:CDS 40.0%
ATGTGATGATCTCTGGATAC+TGG + chr7.2:27247056-27247075 MS.gene058510:CDS 40.0%
ATTTCTGCATATGCAAGAGC+AGG + chr7.2:27247580-27247599 MS.gene058510:CDS 40.0%
CAAAATGCCAGAAAGAAGTG+TGG + chr7.2:27247222-27247241 MS.gene058510:CDS 40.0%
CATCACATTCCAATCTGCAA+TGG - chr7.2:27247044-27247063 None:intergenic 40.0%
CCCGGAAATCAATGTGTTAT+AGG - chr7.2:27247966-27247985 None:intergenic 40.0%
CTGATAGAACCATTGCAGAT+TGG + chr7.2:27247032-27247051 MS.gene058510:CDS 40.0%
CTTTGCATACCCAGTAATCA+TGG - chr7.2:27247167-27247186 None:intergenic 40.0%
GAGAACTAGGTTTGGGTAAT+TGG + chr7.2:27247802-27247821 MS.gene058510:intron 40.0%
GATTGGAATGTGATGATCTC+TGG + chr7.2:27247049-27247068 MS.gene058510:CDS 40.0%
GCAATATAAGTTATGCGGTC+TGG - chr7.2:27248058-27248077 None:intergenic 40.0%
GCCCGATACATCTTTCTATT+TGG + chr7.2:27246854-27246873 MS.gene058510:intron 40.0%
GTGTTGCAGCATGAAAAATG+TGG - chr7.2:27246722-27246741 None:intergenic 40.0%
TCAAAATGGCGAGTCATTCA+AGG + chr7.2:27247687-27247706 MS.gene058510:CDS 40.0%
TCATGGAATTCGATGATTGC+TGG + chr7.2:27247658-27247677 MS.gene058510:CDS 40.0%
TCCTCAAAGAAAATCGCATC+CGG + chr7.2:27247835-27247854 MS.gene058510:intron 40.0%
TTACTGGGTATGCAAAGAAC+GGG + chr7.2:27247170-27247189 MS.gene058510:CDS 40.0%
TTCAATGACATGCTTAGCTC+TGG + chr7.2:27247310-27247329 MS.gene058510:CDS 40.0%
TTGGCTATGATGAAATCTGC+TGG + chr7.2:27246873-27246892 MS.gene058510:intron 40.0%
TTGGGCATATATGCCAAGTA+TGG + chr7.2:27246971-27246990 MS.gene058510:CDS 40.0%
TTTCTGCATATGCAAGAGCA+GGG + chr7.2:27247581-27247600 MS.gene058510:CDS 40.0%
! CAATCTGCAATGGTTCTATC+AGG - chr7.2:27247034-27247053 None:intergenic 40.0%
!! TCCGCCCAAATTATTTTGTC+AGG + chr7.2:27247446-27247465 MS.gene058510:CDS 40.0%
AAATCTTGTGTGCTGCCTCA+AGG - chr7.2:27247507-27247526 None:intergenic 45.0%
AAGCTCAATCGGTCCATACT+TGG - chr7.2:27246987-27247006 None:intergenic 45.0%
ACACCTTGGAGAACTAGGTT+TGG + chr7.2:27247794-27247813 MS.gene058510:intron 45.0%
ACTAGGTTTGGGTAATTGGG+CGG + chr7.2:27247806-27247825 MS.gene058510:intron 45.0%
ACTTGGACCACCATGATTAC+TGG + chr7.2:27247154-27247173 MS.gene058510:CDS 45.0%
ATGCTATCAGGGTATGCTCA+AGG + chr7.2:27247259-27247278 MS.gene058510:CDS 45.0%
CACCTTGGAGAACTAGGTTT+GGG + chr7.2:27247795-27247814 MS.gene058510:intron 45.0%
CAGGATACCACACTTCTTTC+TGG - chr7.2:27247232-27247251 None:intergenic 45.0%
CCAACCAGACGAAACAACAT+GGG + chr7.2:27247339-27247358 MS.gene058510:CDS 45.0%
CCTGGAATGCAATGCTATCA+GGG + chr7.2:27247248-27247267 MS.gene058510:CDS 45.0%
CTGGAAATGCAGGAATGAAG+AGG + chr7.2:27247075-27247094 MS.gene058510:CDS 45.0%
CTTGGACCACCATGATTACT+GGG + chr7.2:27247155-27247174 MS.gene058510:CDS 45.0%
GCAGAAATCATGGCATTCCA+TGG - chr7.2:27247568-27247587 None:intergenic 45.0%
GCTGTGGCATCTTATCAAAG+AGG - chr7.2:27247627-27247646 None:intergenic 45.0%
TCCAACCAGACGAAACAACA+TGG + chr7.2:27247338-27247357 MS.gene058510:CDS 45.0%
TCCTGGAATGCAATGCTATC+AGG + chr7.2:27247247-27247266 MS.gene058510:CDS 45.0%
TCTCTGGATACTGGAAATGC+AGG + chr7.2:27247065-27247084 MS.gene058510:CDS 45.0%
TGCAAAATGTGGGAACCTTG+AGG + chr7.2:27247489-27247508 MS.gene058510:CDS 45.0%
TGCAGCATGAAAAATGTGGC+AGG - chr7.2:27246718-27246737 None:intergenic 45.0%
TGCATACCCAGTAATCATGG+TGG - chr7.2:27247164-27247183 None:intergenic 45.0%
TGCTATCAGGGTATGCTCAA+GGG + chr7.2:27247260-27247279 MS.gene058510:CDS 45.0%
TTCTGCATATGCAAGAGCAG+GGG + chr7.2:27247582-27247601 MS.gene058510:CDS 45.0%
TTGTCTCAGACGATGGAGAT+TGG - chr7.2:27246595-27246614 None:intergenic 45.0%
! CAGAAAGAAGTGTGGTATCC+TGG + chr7.2:27247230-27247249 MS.gene058510:CDS 45.0%
! TACCCAAACCTAGTTCTCCA+AGG - chr7.2:27247800-27247819 None:intergenic 45.0%
! TCCGGATGCGATTTTCTTTG+AGG - chr7.2:27247839-27247858 None:intergenic 45.0%
!! GTTACCCATGTTGTTTCGTC+TGG - chr7.2:27247346-27247365 None:intergenic 45.0%
!! TTTCCATATGATGGGTGAGC+AGG + chr7.2:27247111-27247130 MS.gene058510:CDS 45.0%
AATGTGGCAGGTGTAGCTTG+AGG - chr7.2:27246706-27246725 None:intergenic 50.0%
ACGGGAATTTGAAGACCGCA+AGG + chr7.2:27247188-27247207 MS.gene058510:CDS 50.0%
AGAAAGCTGGACGACAGAGT+GGG + chr7.2:27247421-27247440 MS.gene058510:CDS 50.0%
ATGTGGCAGGTGTAGCTTGA+GGG - chr7.2:27246705-27246724 None:intergenic 50.0%
ATTTCCGGGTTTGCAGAGCA+TGG + chr7.2:27247977-27247996 MS.gene058510:CDS 50.0%
CACAGCGAGATACTGTCTCA+TGG + chr7.2:27247641-27247660 MS.gene058510:CDS 50.0%
CAGGTGAAGACACGTACATC+AGG - chr7.2:27246747-27246766 None:intergenic 50.0%
CATGAGACAGTATCTCGCTG+TGG - chr7.2:27247643-27247662 None:intergenic 50.0%
CATGGAGTTGTCTCAGACGA+TGG - chr7.2:27246602-27246621 None:intergenic 50.0%
CCCTGATAGCATTGCATTCC+AGG - chr7.2:27247251-27247270 None:intergenic 50.0%
CTAACTGCATGCAGTCATGC+AGG + chr7.2:27248082-27248101 MS.gene058510:CDS 50.0%
CTATCAGGGTATGCTCAAGG+GGG + chr7.2:27247262-27247281 MS.gene058510:CDS 50.0%
CTCACCATAGTCACCTCATC+TGG - chr7.2:27247757-27247776 None:intergenic 50.0%
CTTTCTGCTTGTGGACACCT+TGG + chr7.2:27247780-27247799 MS.gene058510:intron 50.0%
GAGACAACTCCATGCACAGT+TGG + chr7.2:27246608-27246627 MS.gene058510:CDS 50.0%
GCTATCAGGGTATGCTCAAG+GGG + chr7.2:27247261-27247280 MS.gene058510:CDS 50.0%
GGTGAGTGTCTTTCTGCTTG+TGG + chr7.2:27247771-27247790 MS.gene058510:intron 50.0%
GTCGTCCAGCTTTCTGACAA+TGG - chr7.2:27247416-27247435 None:intergenic 50.0%
TGTGGACACCTTGGAGAACT+AGG + chr7.2:27247789-27247808 MS.gene058510:intron 50.0%
TTTCCGGGTTTGCAGAGCAT+GGG + chr7.2:27247978-27247997 MS.gene058510:CDS 50.0%
! ATGGACCGATTGAGCTTGCT+AGG + chr7.2:27246990-27247009 MS.gene058510:CDS 50.0%
! TGCAAGGAAGCGCGTACATT+GGG - chr7.2:27246682-27246701 None:intergenic 50.0%
!! CCCATGTTGTTTCGTCTGGT+TGG - chr7.2:27247342-27247361 None:intergenic 50.0%
!! CGCATCCGGATTAGCATTTC+AGG + chr7.2:27247849-27247868 MS.gene058510:intron 50.0%
AGCGCGTACATTGGGTAAGG+AGG - chr7.2:27246674-27246693 None:intergenic 55.0%
ATGCCCATGCTCTGCAAACC+CGG - chr7.2:27247984-27248003 None:intergenic 55.0%
CAAGGCGATCAGGCTGTTTG+AGG + chr7.2:27247705-27247724 MS.gene058510:CDS 55.0%
CAGAAAGCTGGACGACAGAG+TGG + chr7.2:27247420-27247439 MS.gene058510:CDS 55.0%
CCTGGACCACCAAAACCACT+GGG + chr7.2:27246641-27246660 MS.gene058510:CDS 55.0%
CTGCCTGCTCACCCATCATA+TGG - chr7.2:27247117-27247136 None:intergenic 55.0%
GCGAGTCATTCAAGGCGATC+AGG + chr7.2:27247695-27247714 MS.gene058510:CDS 55.0%
TGCAGAGCATGGGCATGGAA+TGG + chr7.2:27247988-27248007 MS.gene058510:CDS 55.0%
! AGGTGTAGCTTGAGGGTGCA+AGG - chr7.2:27246698-27246717 None:intergenic 55.0%
! GGAAGCGCGTACATTGGGTA+AGG - chr7.2:27246677-27246696 None:intergenic 55.0%
! GTGCAAGGAAGCGCGTACAT+TGG - chr7.2:27246683-27246702 None:intergenic 55.0%
!! AGTGGTGGACCAACTGTGCA+TGG - chr7.2:27246620-27246639 None:intergenic 55.0%
!!! CCAGTGGTTTTGGTGGTCCA+GGG - chr7.2:27246643-27246662 None:intergenic 55.0%
ACAGTTGGTCCACCACTCCC+TGG + chr7.2:27246623-27246642 MS.gene058510:CDS 60.0%
CCCTGGACCACCAAAACCAC+TGG + chr7.2:27246640-27246659 MS.gene058510:CDS 60.0%
GGACCACCAAAACCACTGGG+TGG + chr7.2:27246644-27246663 MS.gene058510:CDS 60.0%
GGGTTTGCAGAGCATGGGCA+TGG + chr7.2:27247983-27248002 MS.gene058510:CDS 60.0%
! TTTGGTGGTCCAGGGAGTGG+TGG - chr7.2:27246635-27246654 None:intergenic 60.0%
!! GGAGCACCACCCAGTGGTTT+TGG - chr7.2:27246653-27246672 None:intergenic 60.0%
!! GGTTTTGGTGGTCCAGGGAG+TGG - chr7.2:27246638-27246657 None:intergenic 60.0%
!! TAAGGAGGAGCACCACCCAG+TGG - chr7.2:27246659-27246678 None:intergenic 60.0%
!!! CCCAGTGGTTTTGGTGGTCC+AGG - chr7.2:27246644-27246663 None:intergenic 60.0%
!!! GCACCACCCAGTGGTTTTGG+TGG - chr7.2:27246650-27246669 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 27246529 27248118 27246529 ID=MS.gene058510
chr7.2 mRNA 27246529 27248118 27246529 ID=MS.gene058510.t1;Parent=MS.gene058510
chr7.2 exon 27246529 27246749 27246529 ID=MS.gene058510.t1.exon1;Parent=MS.gene058510.t1
chr7.2 CDS 27246529 27246749 27246529 ID=cds.MS.gene058510.t1;Parent=MS.gene058510.t1
chr7.2 exon 27246905 27247789 27246905 ID=MS.gene058510.t1.exon2;Parent=MS.gene058510.t1
chr7.2 CDS 27246905 27247789 27246905 ID=cds.MS.gene058510.t1;Parent=MS.gene058510.t1
chr7.2 exon 27247863 27248118 27247863 ID=MS.gene058510.t1.exon3;Parent=MS.gene058510.t1
chr7.2 CDS 27247863 27248118 27247863 ID=cds.MS.gene058510.t1;Parent=MS.gene058510.t1
Gene Sequence

>MS.gene058510

TTGAATTGCGACTTGACAGTGGCATGTCACCATTGACCAATACAAACATTGTAAGCAAAATAACCAATCTCCATCGTCTGAGACAACTCCATGCACAGTTGGTCCACCACTCCCTGGACCACCAAAACCACTGGGTGGTGCTCCTCCTTACCCAATGTACGCGCTTCCTTGCACCCTCAAGCTACACCTGCCACATTTTTCATGCTGCAACACATCCTGATGTACGTGTCTTCACCTGTATGCTCAAATACTATTCTCAAATTGGTGTTCACACACAAGTGCTAGTTTCTCTCTTTAAGCATATGCTGCAACACTGTAACATAAAGCCCGATACATCTTTCTATTTGGCTATGATGAAATCTGCTGGAATTGAAAGCATGTTGTTTCTTGCTCATGTATTGAAACGGGATATGATCATGATCATTATGTTCGGAATGGAATTTTGGGCATATATGCCAAGTATGGACCGATTGAGCTTGCTAGGAAACTATTTGATGAAATGCCTGATAGAACCATTGCAGATTGGAATGTGATGATCTCTGGATACTGGAAATGCAGGAATGAAGAGGAAGCAAGTAAGCTTTTCCATATGATGGGTGAGCAGGCAGTAAGTAAGAATGTTATTACTTGGACCACCATGATTACTGGGTATGCAAAGAACGGGAATTTGAAGACCGCAAGGATGTATTTTGACAAAATGCCAGAAAGAAGTGTGGTATCCTGGAATGCAATGCTATCAGGGTATGCTCAAGGGGGAGCACCAGAAGAAACTATAAGATTGTTCAATGACATGCTTAGCTCTGGAAATGTCCAACCAGACGAAACAACATGGGTAACTGTCATATCTTCTTGTTCATCTCTTGGTGACCCTTGTCTTTCAGATTCCATTGTCAGAAAGCTGGACGACAGAGTGGGTTTCCGCCCAAATTATTTTGTCAGGACAGCTCTGCTTGATATGCATGCAAAATGTGGGAACCTTGAGGCAGCACACAAGATTTTTGACCAATTGGGTGTGTACAAGTATAGGAGTTCTGTTCCATGGAATGCCATGATTTCTGCATATGCAAGAGCAGGGGATTTACATTCGGCAAGACACCTCTTTGATAAGATGCCACAGCGAGATACTGTCTCATGGAATTCGATGATTGCTGGTTATACTCAAAATGGCGAGTCATTCAAGGCGATCAGGCTGTTTGAGGAAATGATCTCTAGTGAAGATTCAAAACCAGATGAGGTGACTATGGTGAGTGTCTTTCTGCTTGTGGACACCTTGGAGAACTAGGTTTGGGTAATTGGGCGGTGAACATCCTCAAAGAAAATCGCATCCGGATTAGCATTTCAGGATACAACTCTTTGATTTACATGTACTCAAGATGTGGAGCATTCAAAATGCTGCGTTAATATTCCAAGAAATGGCAACAAGAGATTTAGTTTCCTATAACACATTGATTTCCGGGTTTGCAGAGCATGGGCATGGAATGGAAAGCATCGAGCTATTGTCAAAAATGAAAGAAGACGGTATTGAACCAGACCGCATAACTTATATTGCTATACTAACTGCATGCAGTCATGCAGGATTATTGGAAGAAG
Protein sequence

>MS.gene058510.t1

LNCDLTVACHHUPIQTLUAKUPISIVUDNSMHSWSTTPWTTKTTGWCSSLPNVRASLHPQATPATFFMLQHILIMLFLAHVLKRDMIMIIMFGMEFWAYMPSMDRLSLLGNYLMKCLIEPLQIGMUUSLDTGNAGMKRKQVSFSIUWVSRQUVRMLLLGPPULLGMQRTGIURPQGCILTKCQKEVWYPGMQCYQGMLKGEHQKKLUDCSMTCLALEMSNQTKQHGULSYLLVHLLVTLVFQIPLSESWTTEWVSAQIILSGQLCLICMQNVGTLRQHTRFLTNWVCTSIGVLFHGMPUFLHMQEQGIYIRQDTSLIRCHSEILSHGIRULLVILKMASHSRRSGCLRKUSLVKIQNQMRULWUVSFCFISGYNSLIYMYSRCGAFKMLRUYSKKWQQEIUFPITHUFPGLQSMGMEWKASSYCQKUKKTVLNQTAULILLYULHAVMQDYWKK